Metagenome Family F092543

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092543
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	58 residues
Representative Sequence	MSTSMVPVLGSLSFWRIVDVPFETSVAALDSWLSTRRGGELRFGGSQLLGPMEHDRDLG
Number of Associated Samples	90
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	99.02 %
% of genes near scaffold ends (potentially truncated)	94.39 %
% of genes from short scaffolds (< 2000 bps)	93.46 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (65.421 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (41.121 % of family members)
Environment Ontology (ENVO)	Unclassified (44.860 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (43.925 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.54% β-sheet: 0.00% Coil/Unstructured: 80.46%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00753	Lactamase_B	4.72
PF04960	Glutaminase	4.72
PF03576	Peptidase_S58	2.83
PF00348	polyprenyl_synt	2.83
PF10011	DUF2254	1.89
PF05221	AdoHcyase	1.89
PF02909	TetR_C_1	1.89
PF13669	Glyoxalase_4	1.89
PF00591	Glycos_transf_3	0.94
PF07110	EthD	0.94
PF10101	DUF2339	0.94
PF00903	Glyoxalase	0.94
PF04978	DUF664	0.94
PF03959	FSH1	0.94
PF13535	ATP-grasp_4	0.94
PF04993	TfoX_N	0.94
PF00805	Pentapeptide	0.94
PF00248	Aldo_ket_red	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG3191	L-aminopeptidase/D-esterase	Amino acid transport and metabolism [E]	5.66
COG2066	Glutaminase	Amino acid transport and metabolism [E]	4.72
COG0142	Geranylgeranyl pyrophosphate synthase	Coenzyme transport and metabolism [H]	2.83
COG0499	S-adenosylhomocysteine hydrolase	Coenzyme transport and metabolism [H]	1.89
COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	Transcription [K]	1.89
COG0400	Predicted esterase	General function prediction only [R]	0.94
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.94
COG3070	Transcriptional regulator of competence genes, TfoX/Sxy family	Transcription [K]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.42 %
All Organisms	root	All Organisms	34.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.42 %
cellular organisms	root	All Organisms → cellular organisms	34.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.42 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.42 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	28.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.42 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21.50 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.42 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	13.08 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.93 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.93 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.42 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	3.74 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.87 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.93 %
Sphingosinicellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae	0.93 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.93 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.42 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	3.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.87 %
Merismopediaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Merismopediaceae	0.93 %
Sphingosinicella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella	0.93 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	0.93 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.42 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.87 %
Sphingosinicella ginsenosidimutans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella → Sphingosinicella ginsenosidimutans	0.93 %
unclassified Acidimicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae	0.93 %
Synechocystis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Merismopediaceae → Synechocystis	0.93 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.42 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	3.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.87 %
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	0.93 %
unclassified Synechocystis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Merismopediaceae → Synechocystis → unclassified Synechocystis	0.93 %
Sphingosinicella ginsenosidimutans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella → Sphingosinicella ginsenosidimutans	0.93 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.42 %
Streptomyces sp. 1-11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. 1-11	3.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.87 %
Synechocystis sp. PCC 7509	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Merismopediaceae → Synechocystis → unclassified Synechocystis → Synechocystis sp. PCC 7509	0.93 %
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	0.93 %
Sphingosinicella ginsenosidimutans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella → Sphingosinicella ginsenosidimutans	0.93 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12887957	Not Available	514	Open in IMG/M
3300000955\|JGI1027J12803_109245915	Not Available	750	Open in IMG/M
3300005332\|Ga0066388_105013264	Not Available	673	Open in IMG/M
3300005468\|Ga0070707_100224192	All Organisms → cellular organisms → Bacteria	1830	Open in IMG/M
3300005468\|Ga0070707_100345407	Not Available	1445	Open in IMG/M
3300005537\|Ga0070730_10350657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	960	Open in IMG/M
3300005602\|Ga0070762_10159235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1357	Open in IMG/M
3300005614\|Ga0068856_102185245	Not Available	562	Open in IMG/M
3300006174\|Ga0075014_100119107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1255	Open in IMG/M
3300006174\|Ga0075014_100880200	Not Available	535	Open in IMG/M
3300006804\|Ga0079221_11320987	Not Available	568	Open in IMG/M
3300006904\|Ga0075424_101515118	Not Available	712	Open in IMG/M
3300009101\|Ga0105247_10603620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	814	Open in IMG/M
3300009176\|Ga0105242_11780180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella → Sphingosinicella ginsenosidimutans	654	Open in IMG/M
3300009521\|Ga0116222_1535620	Not Available	514	Open in IMG/M
3300010048\|Ga0126373_10384046	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300010048\|Ga0126373_12110604	Not Available	625	Open in IMG/M
3300010359\|Ga0126376_12061937	Not Available	613	Open in IMG/M
3300010361\|Ga0126378_12046196	All Organisms → cellular organisms → Bacteria → Terrabacteria group	653	Open in IMG/M
3300010361\|Ga0126378_12572722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	581	Open in IMG/M
3300010373\|Ga0134128_13095670	Not Available	511	Open in IMG/M
3300010376\|Ga0126381_100421571	Not Available	1865	Open in IMG/M
3300010376\|Ga0126381_100581131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1591	Open in IMG/M
3300010396\|Ga0134126_10199752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2392	Open in IMG/M
3300010401\|Ga0134121_10429632	Not Available	1201	Open in IMG/M
3300010401\|Ga0134121_10868806	Not Available	873	Open in IMG/M
3300012210\|Ga0137378_10694071	Not Available	929	Open in IMG/M
3300013307\|Ga0157372_12521451	Not Available	590	Open in IMG/M
3300014325\|Ga0163163_10567360	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300014968\|Ga0157379_11130328	Not Available	751	Open in IMG/M
3300014968\|Ga0157379_11130328	Not Available	751	Open in IMG/M
3300015372\|Ga0132256_103250732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	546	Open in IMG/M
3300016357\|Ga0182032_10166564	All Organisms → cellular organisms → Bacteria	1646	Open in IMG/M
3300017955\|Ga0187817_10960697	Not Available	547	Open in IMG/M
3300017961\|Ga0187778_10677452	Not Available	696	Open in IMG/M
3300017973\|Ga0187780_11052500	Not Available	594	Open in IMG/M
3300021344\|Ga0193719_10349825	Not Available	615	Open in IMG/M
3300021407\|Ga0210383_10452027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1109	Open in IMG/M
3300021560\|Ga0126371_13480725	Not Available	531	Open in IMG/M
3300025898\|Ga0207692_10078052	Not Available	1763	Open in IMG/M
3300025906\|Ga0207699_10147845	Not Available	1551	Open in IMG/M
3300025916\|Ga0207663_10753609	Not Available	773	Open in IMG/M
3300026023\|Ga0207677_11386589	Not Available	647	Open in IMG/M
3300027029\|Ga0208731_1017781	Not Available	756	Open in IMG/M
3300027605\|Ga0209329_1106661	Not Available	614	Open in IMG/M
3300027882\|Ga0209590_10036140	Not Available	2655	Open in IMG/M
3300027889\|Ga0209380_10525789	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300027905\|Ga0209415_11003090	Not Available	555	Open in IMG/M
3300028718\|Ga0307307_10053298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1188	Open in IMG/M
3300028755\|Ga0307316_10164941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	792	Open in IMG/M
3300031543\|Ga0318516_10798137	All Organisms → cellular organisms → Bacteria → Terrabacteria group	533	Open in IMG/M
3300031546\|Ga0318538_10444315	Not Available	702	Open in IMG/M
3300031561\|Ga0318528_10744367	Not Available	524	Open in IMG/M
3300031564\|Ga0318573_10297140	Not Available	864	Open in IMG/M
3300031572\|Ga0318515_10419757	Not Available	716	Open in IMG/M
3300031640\|Ga0318555_10274882	Not Available	911	Open in IMG/M
3300031681\|Ga0318572_10193001	Not Available	1187	Open in IMG/M
3300031681\|Ga0318572_10665341	Not Available	620	Open in IMG/M
3300031723\|Ga0318493_10250370	Not Available	946	Open in IMG/M
3300031736\|Ga0318501_10758733	Not Available	536	Open in IMG/M
3300031769\|Ga0318526_10444678	Not Available	530	Open in IMG/M
3300031778\|Ga0318498_10320517	Not Available	694	Open in IMG/M
3300031781\|Ga0318547_10155342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1347	Open in IMG/M
3300031781\|Ga0318547_11044650	Not Available	511	Open in IMG/M
3300031792\|Ga0318529_10075156	All Organisms → cellular organisms → Bacteria	1496	Open in IMG/M
3300031792\|Ga0318529_10184320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. 1-11	966	Open in IMG/M
3300031792\|Ga0318529_10345504	Not Available	693	Open in IMG/M
3300031793\|Ga0318548_10465839	Not Available	618	Open in IMG/M
3300031795\|Ga0318557_10543839	Not Available	533	Open in IMG/M
3300031796\|Ga0318576_10636350	All Organisms → cellular organisms → Bacteria → Terrabacteria group	502	Open in IMG/M
3300031798\|Ga0318523_10469865	All Organisms → cellular organisms → Bacteria → Terrabacteria group	623	Open in IMG/M
3300031799\|Ga0318565_10237843	Not Available	886	Open in IMG/M
3300031799\|Ga0318565_10413707	Not Available	653	Open in IMG/M
3300031845\|Ga0318511_10443915	Not Available	597	Open in IMG/M
3300031845\|Ga0318511_10625728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	503	Open in IMG/M
3300031846\|Ga0318512_10539960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. 1-11	592	Open in IMG/M
3300031880\|Ga0318544_10366408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. 1-11	560	Open in IMG/M
3300031894\|Ga0318522_10382785	Not Available	533	Open in IMG/M
3300031896\|Ga0318551_10449950	Not Available	736	Open in IMG/M
3300031912\|Ga0306921_11228844	Not Available	833	Open in IMG/M
3300031912\|Ga0306921_11378503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Merismopediaceae → Synechocystis → unclassified Synechocystis → Synechocystis sp. PCC 7509	776	Open in IMG/M
3300031912\|Ga0306921_12085117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	601	Open in IMG/M
3300031942\|Ga0310916_11365949	Not Available	581	Open in IMG/M
3300031945\|Ga0310913_11069398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	564	Open in IMG/M
3300031946\|Ga0310910_10438995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. 1-11	1035	Open in IMG/M
3300031946\|Ga0310910_10940067	Not Available	677	Open in IMG/M
3300031947\|Ga0310909_11129295	Not Available	636	Open in IMG/M
3300031954\|Ga0306926_12311513	Not Available	595	Open in IMG/M
3300031962\|Ga0307479_12152487	Not Available	505	Open in IMG/M
3300032009\|Ga0318563_10808588	All Organisms → cellular organisms → Bacteria → Terrabacteria group	502	Open in IMG/M
3300032052\|Ga0318506_10094964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1268	Open in IMG/M
3300032054\|Ga0318570_10506410	Not Available	551	Open in IMG/M
3300032067\|Ga0318524_10293852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	840	Open in IMG/M
3300032067\|Ga0318524_10438088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	683	Open in IMG/M
3300032089\|Ga0318525_10189646	Not Available	1057	Open in IMG/M
3300032094\|Ga0318540_10571633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	545	Open in IMG/M
3300032261\|Ga0306920_101819591	Not Available	859	Open in IMG/M
3300032770\|Ga0335085_12446010	Not Available	519	Open in IMG/M
3300032805\|Ga0335078_11077902	Not Available	942	Open in IMG/M
3300033134\|Ga0335073_11844757	Not Available	562	Open in IMG/M
3300033290\|Ga0318519_10661195	All Organisms → cellular organisms → Bacteria → Terrabacteria group	637	Open in IMG/M
3300034820\|Ga0373959_0228297	Not Available	502	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.72%
Host-Associated	Host-Associated	10.28%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.92%
Plants	Host-Associated → Plants	10.28%
Aquatic	Environmental → Aquatic	2.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.48%
Sediment	Environmental → Aquatic → Sediment	1.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.87%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.09%
Loam	Environmental → Terrestrial → Soil → Loam	12.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.61%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.87%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	47.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.61%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.87%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	41.12%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.80%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.87%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.87%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.87%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027029	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF045 (SPAdes)	Environmental	Open in IMG/M
3300027031	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_128879572	3300000789	Soil	MSTSMIPELGSLSFWRIVDVPFETCVAAFDSWLPTMNGGELRIGGSRLLGPMEHDRELGTRR
JGI1027J12803_1092459151	3300000955	Soil	MSTSMIPEFGSLSFWRIVDVPFETCVAAFDSWLPTMNGGELRIGGSRLLGPME
Ga0066388_1050132641	3300005332	Tropical Forest Soil	MSTSMIPVLRSQSFWQIVDVPFETYVAALDSWLGTGHHGDLRFGRSQLLGPLEHDR
Ga0070688_1001446283	3300005365	Switchgrass Rhizosphere	MSTSMIPELGSLSFWRVVDVPFETCVAAFDSWLPTMNGGELRIGGSRLLG
Ga0070711_1004913861	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSTSMIPELGSLSFWRVVDVPFETCVAAFDSWLPTMSGGELRIGGSRLLGP
Ga0070707_1002241921	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSTSMIPELESLSFSRIVDVPFETCVAALDSWLRTRHGGELRFGRSQLLGPIEHDRD
Ga0070707_1003454072	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MVPVSGSLSFWRIVDVPFETCVAALDSWLRTGHRDELRFGGSQLLGPMEHDRDLGTRRIQ
Ga0070730_103506571	3300005537	Surface Soil	MNTSMIPELRSMSFWRVVDVPFETFVDTLDSWLHTTHGGELRLGGSQFLGSMEHDRDSGTRRIQVRL
Ga0070762_101592351	3300005602	Soil	MSTRMVPVLESLSFWRIEDVPFETYVAALDSWLHTGHGGELRFGGSQLLGPMEHDRDLG
Ga0068856_1021852452	3300005614	Corn Rhizosphere	MSTSMIPELGSLSFWRVVNVPFETCVAAFDSWLPTMNGGELRIGGSRLLGPMEHDREL
Ga0075014_1001191073	3300006174	Watersheds	MSASMVPDLGSLSFWRIADVPFDTYVAALDSWLRTRHGGELWVGGSRLLAPIEHDRD
Ga0075014_1008802002	3300006174	Watersheds	MQSQGAEGADGMSTSMVPVLGSLSFWRIVDVPFETYVAALDSWLRTRHGGELRFGGSQLL
Ga0079222_104501802	3300006755	Agricultural Soil	MNTSMIPELGSLSFWRVVDVPFETCVAALDSWLPTVNGGELRISGSRLVG
Ga0079221_113209872	3300006804	Agricultural Soil	MSTNMVPAPGSLSFWRIVDVPFETCIAALDSWLPAGHGGELRLGGSQVLGPMEHDHDLGTRRVQVRLT
Ga0075424_1015151181	3300006904	Populus Rhizosphere	MSTSMIPEIASLSFWRIVDVPFETYAAAFDAWLGTGHGGELRLGGSRLLGPIEHDRELGTRRIQVRLA
Ga0105247_106036202	3300009101	Switchgrass Rhizosphere	MIPELGSLSFRWIVDVPFETCVGAFDSWLPTMNGGELRIGGSRLLGPMEHDRELGTR
Ga0105242_117801802	3300009176	Miscanthus Rhizosphere	MSTSMIPELGSLSFRWIVDVPFETCVGAFDSWLPTMNGGELRIGGSRLLGPME
Ga0116222_15356201	3300009521	Peatlands Soil	MVPVLGSLSFRRIVDAPVETCVAALDSWLRTRHGGELRFGGSQLLGLVEHD
Ga0126373_103840463	3300010048	Tropical Forest Soil	MSTSMIPEFESLSFRRIVDVPFETCVAALDSWLRTRHGRELRFGRSQLLGPM
Ga0126373_121106042	3300010048	Tropical Forest Soil	MIPEFESLSFRRIVDVPFETCVAALDSWLRTRHGRELRFGRSQLLGPMEHDRDLGTRRIQVRLA
Ga0126376_120619371	3300010359	Tropical Forest Soil	MIPELESLSFRRTVDVPFETCVAALDSWLRTGHGGELRFGRSQLLGPVEHDRALGTRRIQVR
Ga0126378_120461962	3300010361	Tropical Forest Soil	MIPELESLSFWRIVDVPFETCVAAFDSRLRTGDCGELRFGRSQLLGPMERDRDLGTRRIQVRLARG
Ga0126378_125727222	3300010361	Tropical Forest Soil	MVPVLESLSFWRIVDVPFETSVAALDGWLGPRHGGELRFGGSQLLGPLEHDRHIGTRRHQVR
Ga0134128_130956701	3300010373	Terrestrial Soil	MTTSMVPDLGSLSFWRIAAVPFDTYVAALDSWLPAKHGGELWFGGSQLLAPMEHDRDL
Ga0126381_1004215713	3300010376	Tropical Forest Soil	MIPVSGSPSFWRIVDVPFETCVEVLDTWLRTRHGGELRFGGSQLLGPMEHDRDS
Ga0126381_1005811312	3300010376	Tropical Forest Soil	MSTSMIPVLRSQSFWQIVDVPFETYVAALDNWLGTSHHGDLRFGRSQLLGPLEHDR
Ga0134126_101997524	3300010396	Terrestrial Soil	MIPELGSLSFWRVVNVPFETCVAAFDSWLPTMNGGELRIGGSRLLGPMEHDRELG
Ga0134121_104296322	3300010401	Terrestrial Soil	MNTSMIPELGSLSFWRVVDVPFETCLAAFDSWLPTMSGGELRIGGSRLLGPIEHDRELGT
Ga0134121_108688061	3300010401	Terrestrial Soil	MTTSMVSDLGSLSFWRIAAVPFDTYVAALDSWLPAEHGGELWFGGSQL
Ga0137378_106940711	3300012210	Vadose Zone Soil	MVPVLGSLSFWRIVDVPFETFVATLDSGLRTRHGGELRFGGSQLLGPMEHDRDLGTRRIQVR
Ga0157372_125214511	3300013307	Corn Rhizosphere	MIPELGSLSFRWIVDVPFETCVGAFDSWLPTMNGGELRIGGSRLLGPMEH
Ga0163163_105673601	3300014325	Switchgrass Rhizosphere	MIPELGSLSFWRVVDVPFETCVAAFDSWLPTMNGGELRIGGSRLLGPMEHDRELGTRRIQ
Ga0157379_111303281	3300014968	Switchgrass Rhizosphere	MIPELGSLSFWRVVNVPFETCVAAFDSWLPTMNGGELRIGGSRLLGPMEHDRELGT
Ga0157379_111303282	3300014968	Switchgrass Rhizosphere	MIPELGSLSFWRVVDVPFETCVAAFDSWLPTMNGGELRIGGSRLLGPMEHDRELGTRRIQVRLARG
Ga0132256_1032507322	3300015372	Arabidopsis Rhizosphere	MIPEFGSLSFWRTVDVPFEMCVAAVDSWLPAMNGGELRIGGSRLLGPMEHDRDVGTRRIQVRLARG
Ga0182032_101665642	3300016357	Soil	MGTSMAPALGSLSFWQIVDVPFETYVAALDGWLGTTPGVEVRLGGSQLVGPLEHDRDTGTRRIQVRV
Ga0187817_109606971	3300017955	Freshwater Sediment	MPLGAGGADGMSTSMIPAINSLSFWRIVDVSFETYLAALDGWLRTSHGGELRFGGSQLLGPMEHDRD
Ga0187778_106774521	3300017961	Tropical Peatland	MSTSMVPVLGSLSFWRIVDVPFETCVAALDSWLSTRRGGELRFGGSQLLGPMEHDHDLGVRQIQVRL
Ga0187780_110525001	3300017973	Tropical Peatland	MGPVPASLSFRRIVDVPFETCVAALDSWLRTGHGGDLRSGAGQVPGPVQHDPESGTCRIEVRLA
Ga0193719_103498252	3300021344	Soil	MSTSLIPELGSLSFWRIVDVPFETCVAAFDSWLPTMNGGELRIGGSRLLGPMEHDRDVGTRRIEV
Ga0210397_102889562	3300021403	Soil	MTTSMIADLGSLSFWRIAAVPFDTYVAALDSWLPAGNGSELWFGGSQLLA
Ga0210383_104520271	3300021407	Soil	MSTRMGPMLESLSFWRIEDVPFETYVAALDSWPYTGHGGELWFGGSQLLGPMEHDR
Ga0126371_134807251	3300021560	Tropical Forest Soil	MSTSMVPAPASLSFWRIADVPFETCVTALDSWLRAGHGGELRFGGSQVLGPMEHDHD
Ga0207692_100780521	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSTSMIPELGSLSFWRVVDVPFETCVAAFDSWLPTMSGGELRIGGSRLLGPI
Ga0207699_101478451	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSTSMIPELGSLSFWRVVDVPFETCVAAFDSWLPTMSGGELRIGGSRLLGPIEHDRELGTRRIQ
Ga0207663_107536091	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSTSMIPELGSLSFWRVVDVPFETCVAAFDSWLPTMSGGELRIGGSRLLGPIEHDRELGTRR
Ga0207677_113865891	3300026023	Miscanthus Rhizosphere	MSTSMIPELGSLSFRWIVDVPFETCVGAFDSWLPTMNGGELRIGGSRLLGPMEH
Ga0208731_10177811	3300027029	Forest Soil	MSTRMVPVLESLSFWRIEDVPFETYVAALDSWLHTGHGDKLRFGGSQLLGPMEHDRDLGTRRIQVHLA
Ga0208986_10053251	3300027031	Forest Soil	MSTSMIPELGSLSFWRVVDVSFETCVAAFDSWLPTMNGGELRIGGSRLL
Ga0209329_11066612	3300027605	Forest Soil	MSTSMIPVLGSLSFWRIVDVPFETSVAALDSWLRTGHSGELRFGGSQLLGPMEHDRDVGTCRVQV
Ga0209590_100361401	3300027882	Vadose Zone Soil	MHPREARGTDGMTTNMVPVPGSLSFWRIVDVPFETCVAALDSWLCTGQGGELRFGGSQLLGPMEHDCDLGT
Ga0209380_105257891	3300027889	Soil	MHPEGWQREQVAMSTSPVSVLGSLSFWRIEDVPFETYVAALDGWLRTRRGGELRFGGSQL
Ga0209415_110030902	3300027905	Peatlands Soil	MSTSMVPKLGSLSFWRIVDVPFETCVATLDSWLRTKHGGELRFGGSQFLGSMEH
Ga0307307_100532981	3300028718	Soil	MSTSLIPELGSLSFWRIVDVPFETCVAAFDSWLPTMNGGELRIGGSRLLGPMEHDRDVGTRRIEVR
Ga0307316_101649411	3300028755	Soil	MSTSLIPELGSLSFWRIVDVPFETCVAAFDSWLPTMNGGELRVGGSRLLGPMEHDRDVGT
Ga0318516_107981371	3300031543	Soil	MSANLDPVSGSPSFWRIVDVPFETYVAALDNWLGARRGVELRIGGSQLLGPLEHD
Ga0318538_104443151	3300031546	Soil	MSTNMVPALGSLSFWRIVDVPFETCVAALDSWLRTGHGGELRFGGSQLSGPMGHDRDLGTRRIQVR
Ga0318528_107443671	3300031561	Soil	MSTNVVPAPGSLSFWRIVDLPFDTCVAALDSWLRARHGAELRFGGSQLFGPM
Ga0318573_102971402	3300031564	Soil	MSTSMVPVLRSLSFWQIVDVPFDTYVAALDSWLRTRRSGELRFGRSQLLGPMEHERDLGTRRIQ
Ga0318515_104197571	3300031572	Soil	MVPVHESLAFWRIVDIPFDTFVAALDSWLGAGHDGEARFGGSQLLGPMEHDRDLGTRRIQ
Ga0318555_102748822	3300031640	Soil	MSTSMVPVSGSLSFRRIVDVPFETCVAELDSWLRTERGGGLRFGGSQLLGPIELDHDLGTRRIQVRLARG
Ga0318572_101930011	3300031681	Soil	MVPVHESLAFWRIVDIPFETFVAALDSWLGAGHSGEARFGGSQLLGPMEHDRDLGTRRI
Ga0318572_106653411	3300031681	Soil	MSTNMVPALGSLSFWRIVDVPFETCVAALDSWLRTGHGGELRFGGSQLSGPM
Ga0318493_102503701	3300031723	Soil	MSTSMVPVSGSLSFRRIVDVPFETCVAELDSWLRTERGGGLRFGGSQLLGPIELDHDLGTRRIQV
Ga0318501_107587332	3300031736	Soil	MSTNMVPALGSLSFWRIVDVPFETCVAALDSWLRTGHGGELRFGGSQLSGPMGHDRDL
Ga0318526_104446781	3300031769	Soil	MNTSMVSAPGSLSFWRIVDVPFDACVAALDNWLRTRHGGELRFGGSQVLGPME
Ga0318498_103205171	3300031778	Soil	MSTSMVPVSGSLSFRRIVDVPFETCVAELDSWLRTERGGGLRFGGSQLLGPIELDHDLGTRRIQVRL
Ga0318547_101553421	3300031781	Soil	MSTSTVPAFGSLSFWRIVDVPFETCVAALDGRLPTGHGGELWLGGSQLLGPMEHDR
Ga0318547_110446501	3300031781	Soil	MSTSMVPVLGSLSFWRIVDVPFETSVAALDSWLSTRRGGELRFGGSQLLGPMEHDRDLG
Ga0318529_100751562	3300031792	Soil	MGTSMAPALGSLSFWQIVDVPFETYVAALDGWLGTTPGVEVRLGGSQLLGPLEHD
Ga0318529_101843202	3300031792	Soil	MNTSMVSAPGSLSFWRIVDVPFDACVAALDNWLRTRHGGELRFGGSQVLGPMEHD
Ga0318529_103455041	3300031792	Soil	MSMSMVPELRSLSFWRVVDVPFETHVAALDSWLRTSHRGELRFGGSQLLGPL
Ga0318548_104658391	3300031793	Soil	MSTSTVPAFGSLSFWRIVDVPFETCVAALDGRLPTGHGGELWLGGSQLLGPMEHDRDVGT
Ga0318557_105438391	3300031795	Soil	MSTSMIPVLRSQSFWQIVDVPFDTYVAALDSWLRTRRSGELRFGRSQLLGPME
Ga0318576_106363502	3300031796	Soil	MSANPDPVSGSPSFWRIVDVPFETYVAALDSWLGARRGVELRLGGSQLLGPLE
Ga0318523_104698652	3300031798	Soil	MSANPDPVSGSPSFWRIVDVPFETYVAALDSWLGARRGVELRLGGSQLLGPLEHD
Ga0318565_102378432	3300031799	Soil	MSTSMVPVSGSLSFRRIVDVPFETCVAALDSWLITRHGGELRFGGSQLLGPM
Ga0318565_104137072	3300031799	Soil	MSTNMVPAPGSLSFWRIVDIPFETCIAALDSRLRAGHGSELRFGGSQVLGPMEHD
Ga0318511_104439151	3300031845	Soil	MSTSMVPVLRSLSFWQIVDVPFDTYVAALDSWLRTRRSGELRFGRSQLLGPMEHERDLGT
Ga0318511_106257281	3300031845	Soil	MGTSMAPALGSLSFWQIVDVPFETYVAALDGWLGTTPGVEVRLGGSQLLGPL
Ga0318512_105399601	3300031846	Soil	MNTSMVSAPGSLSFWRIVDVPFDACVAALDNWLRTRHGGELRFGGSQVLG
Ga0318544_103664082	3300031880	Soil	MNTSMVSAPGSLSFWRIVDVPFDACVAALDNWLRTRHGGELRFGGSQVLGPMEHDHD
Ga0318522_103827851	3300031894	Soil	MSARIVPARGWLSFRRIVDVPFETCVAALDSGQRTGRGGGLRFGGSPLRGPVEHDPNSGTCRIQ
Ga0318551_104499502	3300031896	Soil	MSTSMVPVLRSLSFWQIVDVPFDTYVAALDSWLRTRRSGELRFGRSQLLG
Ga0306921_112288442	3300031912	Soil	MSTSMVPVSGSLSFRRIVDVPFETCVAELDSWLRTERGGGLRFGGSQLLGPIELDHDLGT
Ga0306921_113785031	3300031912	Soil	MSTNMVPALGSPSFWRIVDVPFETCVAALDSWLRTGHGGELRFGGSQLSGPMG
Ga0306921_120851171	3300031912	Soil	MSTSMAPALGSLSFWQIVDVPFETYVAALDGWLGTTPGVEVRLGGSQLLGPLEHDRDTG
Ga0310916_113659492	3300031942	Soil	MVPVHESLAFWRIVDIPFETFVAALDSWLGAGHDGEARFGGSQLLGPMEHDRD
Ga0310913_110693981	3300031945	Soil	MSTSMAPALGSLSFWQIVDVPFETYVAALDGWLGTTPGVEVRLGGSQLLGPLERD
Ga0310910_104389952	3300031946	Soil	MNTSMVSAPGSLSFWRIVDVPFDACVAALDNWLRTRHGGELRFGGSRVLGPMEHDHDSGTRRIQVRLAR
Ga0310910_109400671	3300031946	Soil	MSTSMVPAFESLSFWQTVDVPFETCVAALDDWLRTGHGGGLRFGGSRLSGPMEHDRDLGTRRIQV
Ga0310909_111292951	3300031947	Soil	MRTNLDPALGSPSFWRIVDVPFETCVAALDSWLRTGHGGELRFGGSQLSGPMG
Ga0306926_123115132	3300031954	Soil	MSTSMVPVSGSLSFRRIVDVPFETCVAELDSWLRTERGGGLRFGGSQLLGPIELD
Ga0307479_121524871	3300031962	Hardwood Forest Soil	MTTSMIPDLGSLSFWRIAAVPFDTYVAALDSWLSTRHGGELWFGGSQ
Ga0318563_108085881	3300032009	Soil	MSANPDPVSGSPSFWRIVDVPFETYVAALDSWLGARRGVELRLGGSQLLGPLEH
Ga0318506_100949643	3300032052	Soil	MSTSTVPAFGSLSFWRIVDVPFETCVAALDGRLPTGHGGELWLGGSQLLGPME
Ga0318570_105064101	3300032054	Soil	MSTNMVPALGSPSFWRIVDVPFETCVAALDSWLRTGHGGELRFGGSQLSGPMGHDRDLGTRRTW
Ga0318524_102938521	3300032067	Soil	MTTSMIPVRESLSFWRIVDTPFETYVAALDSWLHTGHGGEPRLGASQLLGPIDHD
Ga0318524_104380881	3300032067	Soil	MVPVIESLSFWRIEDVPFETCVAALDGWLRAGHDGGLRFGGSQLLGPM
Ga0318525_101896462	3300032089	Soil	MSTSMVPVSGSLSFRRIVDVPFETCVAELDSWLRTERGGGLRFGGSQLLGPIELDHD
Ga0318540_105716332	3300032094	Soil	MSTSMVPVLESLSFWRTVDVPFETFVAALDSWLTTTHNGELRFGGSQLLGPLEHDRDVGT
Ga0306920_1018195911	3300032261	Soil	MSTSLDRVFGSPSFRQIVDVPFETCVAALDSWLRTSPGGELRFGGSQLLGPLEHDRDVGTRRI
Ga0335085_124460102	3300032770	Soil	MSTSMVPALESLSFWRIVDVPFETCVAALDGLLRARHGGGLRFGGSQLLGPLELDH
Ga0335078_110779023	3300032805	Soil	MSTSMVPAPGSLSFWRIADVPFETCVTALDSWLSAGHGGELRFGGSQVLGPMEHDHDLGTRR
Ga0335073_118447572	3300033134	Soil	MSTNLVPAPGSLSFWRIADVPFETCIAALDSWLRAGRGGELRFGGSQVLG
Ga0318519_106611951	3300033290	Soil	MSANPDPVSGSPSFWRIVDVPFETYVAALDSWLGARRGVELRLGGSQLLGPLEHDRDVD
Ga0373959_0228297_328_501	3300034820	Rhizosphere Soil	MSTSMIPELGSLSFWRVVDVPFETCVAAFDSWLPTMSGGELRIGGSRLLGPIEHDREL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092543

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences