Metagenome Family F092517

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092517
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	43 residues
Representative Sequence	AAETVKRARHAPAATSYEAATDDALARLEAVTELKTAWHPVGA
Number of Associated Samples	94
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	93.46 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.944 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (26.168 % of family members)
Environment Ontology (ENVO)	Unclassified (28.037 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.140 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.99% β-sheet: 0.00% Coil/Unstructured: 69.01%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF04191	PEMT	9.35
PF00248	Aldo_ket_red	6.54
PF13556	HTH_30	3.74
PF00891	Methyltransf_2	2.80
PF13338	AbiEi_4	2.80
PF13460	NAD_binding_10	1.87
PF08592	Anthrone_oxy	1.87
PF01872	RibD_C	1.87
PF11706	zf-CGNR	1.87
PF02653	BPD_transp_2	0.93
PF16864	Dimerisation2	0.93
PF07336	ABATE	0.93
PF09286	Pro-kuma_activ	0.93
PF08989	DUF1896	0.93
PF05988	DUF899	0.93
PF01048	PNP_UDP_1	0.93
PF07238	PilZ	0.93
PF08818	DUF1801	0.93
PF01761	DHQ_synthase	0.93
PF00155	Aminotran_1_2	0.93
PF08281	Sigma70_r4_2	0.93
PF02608	Bmp	0.93
PF06224	HTH_42	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.87
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.87
COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	Nucleotide transport and metabolism [F]	0.93
COG0813	Purine-nucleoside phosphorylase	Nucleotide transport and metabolism [F]	0.93
COG1744	Lipoprotein Med, regulator of KinD/Spo0A, PBP1-ABC superfamily, includes NupN	Signal transduction mechanisms [T]	0.93
COG2820	Uridine phosphorylase	Nucleotide transport and metabolism [F]	0.93
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	0.93
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.93
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.93
COG4934	Serine protease, subtilase family	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG5516	Uncharacterized conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding	General function prediction only [R]	0.93
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.94 %
Unclassified	root	N/A	42.06 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.94 %
Unclassified	root	N/A	42.06 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.94 %
Unclassified	root	N/A	42.06 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	45.79 %
Unclassified	root	N/A	42.06 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	43.93 %
Unclassified	root	N/A	42.06 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.06 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	21.50 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9.35 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.06 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	18.69 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.80 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	1.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.06 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	9.35 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.80 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	1.87 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.06 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	9.35 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.80 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	1.87 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.06 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	6.54 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.80 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1.87 %
Streptomyces chromofuscus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces chromofuscus	0.93 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.06 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	6.54 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.80 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1.87 %
Solirubrobacter sp. URHD0082	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	0.93 %
Streptomyces chromofuscus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces chromofuscus	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_100091519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	861	Open in IMG/M
3300000956\|JGI10216J12902_119566210	Not Available	648	Open in IMG/M
3300001538\|A10PFW1_10300867	Not Available	587	Open in IMG/M
3300002568\|C688J35102_120973095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3917	Open in IMG/M
3300003373\|JGI25407J50210_10159502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	555	Open in IMG/M
3300004153\|Ga0063455_100223571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	957	Open in IMG/M
3300004157\|Ga0062590_102563995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	541	Open in IMG/M
3300005166\|Ga0066674_10404530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	632	Open in IMG/M
3300005180\|Ga0066685_10767250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	656	Open in IMG/M
3300005329\|Ga0070683_100783290	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300005345\|Ga0070692_10493194	Not Available	792	Open in IMG/M
3300005347\|Ga0070668_101899245	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300005455\|Ga0070663_102073647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	512	Open in IMG/M
3300005529\|Ga0070741_10314385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1465	Open in IMG/M
3300005537\|Ga0070730_10839858	Not Available	577	Open in IMG/M
3300005542\|Ga0070732_10678881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	627	Open in IMG/M
3300005548\|Ga0070665_101280638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	743	Open in IMG/M
3300006162\|Ga0075030_100858645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	716	Open in IMG/M
3300006174\|Ga0075014_100774776	Not Available	564	Open in IMG/M
3300006755\|Ga0079222_11872503	Not Available	584	Open in IMG/M
3300006847\|Ga0075431_100377985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1421	Open in IMG/M
3300006852\|Ga0075433_10151385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2064	Open in IMG/M
3300006853\|Ga0075420_101908670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	508	Open in IMG/M
3300006871\|Ga0075434_102590936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	508	Open in IMG/M
3300006893\|Ga0073928_10126861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2093	Open in IMG/M
3300006893\|Ga0073928_10500626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	871	Open in IMG/M
3300006904\|Ga0075424_102197937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	581	Open in IMG/M
3300006954\|Ga0079219_10728140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	761	Open in IMG/M
3300007076\|Ga0075435_101297029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	638	Open in IMG/M
3300009522\|Ga0116218_1159559	Not Available	1023	Open in IMG/M
3300009840\|Ga0126313_10924539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	712	Open in IMG/M
3300010036\|Ga0126305_10916288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	599	Open in IMG/M
3300010044\|Ga0126310_11293907	Not Available	589	Open in IMG/M
3300010396\|Ga0134126_10699680	Not Available	1152	Open in IMG/M
3300010396\|Ga0134126_10978736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	948	Open in IMG/M
3300010396\|Ga0134126_11012757	Not Available	930	Open in IMG/M
3300010397\|Ga0134124_11233946	Not Available	769	Open in IMG/M
3300010400\|Ga0134122_12545204	Not Available	561	Open in IMG/M
3300012181\|Ga0153922_1113482	Not Available	621	Open in IMG/M
3300012212\|Ga0150985_110618280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	662	Open in IMG/M
3300012915\|Ga0157302_10311671	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300012942\|Ga0164242_10493219	Not Available	879	Open in IMG/M
3300012944\|Ga0137410_11481644	Not Available	592	Open in IMG/M
3300012955\|Ga0164298_10424586	Not Available	867	Open in IMG/M
3300012987\|Ga0164307_10145408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1553	Open in IMG/M
3300012987\|Ga0164307_11402157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	588	Open in IMG/M
3300012988\|Ga0164306_10540412	Not Available	903	Open in IMG/M
3300012988\|Ga0164306_10764996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	774	Open in IMG/M
3300012989\|Ga0164305_11119516	Not Available	677	Open in IMG/M
3300015077\|Ga0173483_10323720	Not Available	764	Open in IMG/M
3300015245\|Ga0137409_11135200	Not Available	621	Open in IMG/M
3300015371\|Ga0132258_10049195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	9629	Open in IMG/M
3300016294\|Ga0182041_11828163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	564	Open in IMG/M
3300016341\|Ga0182035_12061417	Not Available	518	Open in IMG/M
3300017974\|Ga0187777_10070413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2267	Open in IMG/M
3300018054\|Ga0184621_10200581	Not Available	715	Open in IMG/M
3300018089\|Ga0187774_11236916	Not Available	537	Open in IMG/M
3300018422\|Ga0190265_10511768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1314	Open in IMG/M
3300018466\|Ga0190268_11940895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	538	Open in IMG/M
3300018910\|Ga0193598_1021884	All Organisms → cellular organisms → Bacteria	1658	Open in IMG/M
3300019377\|Ga0190264_10030087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1963	Open in IMG/M
3300019377\|Ga0190264_11384146	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300021388\|Ga0213875_10554009	Not Available	554	Open in IMG/M
3300021403\|Ga0210397_10609617	Not Available	835	Open in IMG/M
3300021403\|Ga0210397_11095720	Not Available	619	Open in IMG/M
3300021477\|Ga0210398_11104448	Not Available	630	Open in IMG/M
3300021560\|Ga0126371_13514651	Not Available	529	Open in IMG/M
3300022756\|Ga0222622_10057262	All Organisms → cellular organisms → Bacteria	2231	Open in IMG/M
3300025905\|Ga0207685_10082633	Not Available	1333	Open in IMG/M
3300025917\|Ga0207660_10920267	Not Available	713	Open in IMG/M
3300025933\|Ga0207706_11363818	Not Available	583	Open in IMG/M
3300026067\|Ga0207678_11736064	Not Available	547	Open in IMG/M
3300026078\|Ga0207702_11923499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	583	Open in IMG/M
3300026323\|Ga0209472_1106406	Not Available	1114	Open in IMG/M
3300027787\|Ga0209074_10458209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	546	Open in IMG/M
3300028379\|Ga0268266_11361165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	685	Open in IMG/M
3300028704\|Ga0307321_1019912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1178	Open in IMG/M
3300028705\|Ga0307276_10201966	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300028719\|Ga0307301_10238561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	593	Open in IMG/M
3300028721\|Ga0307315_10239954	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300028721\|Ga0307315_10300274	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300028771\|Ga0307320_10326354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	611	Open in IMG/M
3300028775\|Ga0302231_10516085	Not Available	506	Open in IMG/M
3300028799\|Ga0307284_10417699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547	Open in IMG/M
3300028807\|Ga0307305_10203913	Not Available	909	Open in IMG/M
3300028875\|Ga0307289_10047788	All Organisms → cellular organisms → Bacteria	1708	Open in IMG/M
3300028875\|Ga0307289_10345191	All Organisms → cellular organisms → Bacteria → Terrabacteria group	613	Open in IMG/M
3300028875\|Ga0307289_10389032	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300028878\|Ga0307278_10233575	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300028880\|Ga0307300_10071198	Not Available	1014	Open in IMG/M
3300028880\|Ga0307300_10331191	Not Available	521	Open in IMG/M
3300028881\|Ga0307277_10135187	Not Available	1063	Open in IMG/M
3300028885\|Ga0307304_10174473	Not Available	908	Open in IMG/M
3300030503\|Ga0311370_11501509	Not Available	705	Open in IMG/M
3300031234\|Ga0302325_12558717	Not Available	607	Open in IMG/M
3300031546\|Ga0318538_10716304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	543	Open in IMG/M
3300031720\|Ga0307469_12220402	Not Available	535	Open in IMG/M
3300031751\|Ga0318494_10208885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1114	Open in IMG/M
3300031852\|Ga0307410_11911573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	528	Open in IMG/M
3300031858\|Ga0310892_10691371	Not Available	699	Open in IMG/M
3300031908\|Ga0310900_10613235	Not Available	862	Open in IMG/M
3300031938\|Ga0308175_100005083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	9304	Open in IMG/M
3300031938\|Ga0308175_102899980	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300031995\|Ga0307409_102591125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces chromofuscus	536	Open in IMG/M
3300032089\|Ga0318525_10255941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	900	Open in IMG/M
3300032828\|Ga0335080_12266674	Not Available	520	Open in IMG/M
3300032955\|Ga0335076_10875128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	780	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.31%
Host-Associated	Host-Associated	18.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.70%
Plants	Host-Associated → Plants	17.76%
Aquatic	Environmental → Aquatic	5.61%
Fungi	Host-Associated → Fungi	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.08%
Sediment	Environmental → Aquatic → Sediment	3.74%
Peat	Environmental → Terrestrial → Peat	2.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.80%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.87%
Roots	Host-Associated → Plants → Roots	1.87%
Mycelium	Host-Associated → Fungi → Mycelium	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.48%
Loam	Environmental → Terrestrial → Soil → Loam	5.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.80%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.87%
Sand	Environmental → Terrestrial → Soil → Sand	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.12%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.74%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.80%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.87%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	26.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.74%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.80%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.80%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.80%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.87%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.87%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Compost	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost	0.93%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.93%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.93%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012942	Miracle-Growth compost microbial communities from Emeryville, California, USA - Original compost - Miracle growth compost (MG)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018910	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 18 hrs after wetting v1	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1000915192	3300000956	Soil	TELDKLASETIKRTRHNSAATTYDEAVDNSLSRLEAVTELKTAWHPIGA*
JGI10216J12902_1195662101	3300000956	Soil	DRLAAETVKRARHAAPARTYDAATDDALARLEAVTELKTAWHPIGA*
A10PFW1_103008671	3300001538	Permafrost	PELSAELDRLAAETIKRVRHRAAAPSYDAAVADSLERIESVTELKTAWHPVGA*
C688J35102_1209730954	3300002568	Soil	TELDKLASETIKRTRHSAAATSYDAAIADALNRLEAVTELKTAWHPIGA*
JGI25407J50210_101595022	3300003373	Tabebuia Heterophylla Rhizosphere	RLAADSVTRVRHAAATTSYEAGVADALGRLEAVVELKTAWHPVGA*
Ga0063455_1002235714	3300004153	Soil	LAAESVTRVRHSSPTTSYALATADNLARLEAVTELKTAWHPVGA*
Ga0062590_1025639952	3300004157	Soil	LAAESVTRVRHTTASTDYTTATADPLSRLEALTELKTAWHPVGA*
Ga0066674_104045302	3300005166	Soil	TELDKLASETIKRTRHGSPATTYDEAVAAALTRLEAVTELKTAWHPIGA*
Ga0066685_107672502	3300005180	Soil	ELDRLAAETIKRVRHGAAATSYDEAVSDALSRIDALTELKTAWHPIGA*
Ga0070683_1007832901	3300005329	Corn Rhizosphere	LDRLAAETVKRTRHGAAAGTYEAATDDALARLEAVTELKTAWHPIGA*
Ga0070692_104931941	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	LAAESVTRVRHTMASTGYAAATADPLSRLEALTELKTAWHPVGA*
Ga0070668_1018992451	3300005347	Switchgrass Rhizosphere	ESVDRLASESVTRVRRAAPTRSYEAAIADALTRLEAVTELKTAWHPIGA*
Ga0070663_1020736471	3300005455	Corn Rhizosphere	AAETVKRARHAPAATSYEAATDDALARLEAVTELKTAWHPVGA*
Ga0070741_103143851	3300005529	Surface Soil	ADLDRLASETIKRVRHAHATRGYDTAVTDSLARIEAVTELKTAWHPVGA*
Ga0070730_108398582	3300005537	Surface Soil	TELDKLAAETIKRVRHRVAATSYEDATGDALERLHAVTELKTAWHPVGA*
Ga0070732_106788812	3300005542	Surface Soil	SETIKRARHPEAATSYEAAVADALERLEAVTELKTAWHPVGA*
Ga0070665_1012806383	3300005548	Switchgrass Rhizosphere	ETIKRARHSAGATTYDEATGNALTRLEAVTELKTAWHPIGA*
Ga0075030_1008586452	3300006162	Watersheds	ELGAELDRLGAETIKRVHHRRPAHTYDDAVADALERIEGVSELKTAWHPIGA*
Ga0075014_1007747762	3300006174	Watersheds	HSVAATTYEAATDDALERIEAVTELKTAWHPVGA*
Ga0079222_118725032	3300006755	Agricultural Soil	VRHGAAATGYEDATGDALERLEAVTELKTAWHPVGA*
Ga0075431_1003779851	3300006847	Populus Rhizosphere	AESVTRVRHADPTRSYALATSDALARLEAVTELKTAWHPVGA*
Ga0075433_101513851	3300006852	Populus Rhizosphere	AESVTRVRHTDAPNDYAAATADPLSRLEALTELKTAWHPVGA*
Ga0075420_1019086702	3300006853	Populus Rhizosphere	REQVDRLAAESVTRVRHCQPSASYDAATADALTRLEAVTELKTAWHPVGA*
Ga0075434_1025909362	3300006871	Populus Rhizosphere	ELDGLAAETIKRVRHGSGAESYAAAVDDALERIEAVTELKTAWHPVGA*
Ga0073928_101268614	3300006893	Iron-Sulfur Acid Spring	LASETIKRTRHSAAATSYADAVDDALDRLVAVTELKTAWHPVGA*
Ga0073928_105006262	3300006893	Iron-Sulfur Acid Spring	AAGEPELSAELDRLASETIKRVRHTTAARDYELAVADALGRIDALTELKTAWHPVGA*
Ga0075424_1021979371	3300006904	Populus Rhizosphere	KRTRHNSAATTYDEAVDNSLSRLEAVTELKTAWHPIGA*
Ga0079219_107281402	3300006954	Agricultural Soil	SAALDRLAAETIKRVRHGSAATSYAAAVDDALERIEATVELKTAWHPVGA*
Ga0075435_1012970292	3300007076	Populus Rhizosphere	IKRVRHGSGAESYAAAVDDALERIEAVTELKTAWHPVGA*
Ga0116218_11595592	3300009522	Peatlands Soil	AELDRLAAETIKRVRHGAAATGYEGATDDALDRLEAVTELKTAWHPVGA*
Ga0126313_109245391	3300009840	Serpentine Soil	RVRHTTPSESYADATSDPLSRLEALTELKTAWHPVGA*
Ga0126305_109162882	3300010036	Serpentine Soil	VRHAAPTGSYAEATGDPLSRLEAVTELKTAWHPVGA*
Ga0126310_112939071	3300010044	Serpentine Soil	AESVTRVSHTAAATSYETATADPLSRLEALTELKTAWHPVGA*
Ga0134126_106996801	3300010396	Terrestrial Soil	ETIKRVRHADAAMSYEDATGDALERLHAVTELKTAWHPVGA*
Ga0134126_109787361	3300010396	Terrestrial Soil	IDKLAAESVTRVRHTPASNDYATATADPLSRLEALTELKTAWHPVGA*
Ga0134126_110127572	3300010396	Terrestrial Soil	ELDRLAAETIKRARHRDAAASYETAVADALERIEALTELKTAWHPVGA*
Ga0134124_112339462	3300010397	Terrestrial Soil	AAESVTRVRHTTPADSYEAATGDPLSRLEAVTELKTAWHPVGA*
Ga0134122_125452042	3300010400	Terrestrial Soil	RHAAASNDYATATADPLSRLEALTELKTAWHPVGA*
Ga0153922_11134821	3300012181	Attine Ant Fungus Gardens	LAAETIKRVRHGAPARTYEDAVDEALTRLEAVTELKTAWHPVGA*
Ga0150985_1106182801	3300012212	Avena Fatua Rhizosphere	RHSAAATSYDAAIADALNRLEAVTELKTAWHPIGA*
Ga0157302_103116712	3300012915	Soil	DRLAAESVTRVRHAQATQTYDGAVGDALTRLEAVTELKTAWHPIGA*
Ga0164242_104932192	3300012942	Compost	AAETIKRASHRSAATSYEAAVDDALERIAALTELKTAWHPVGA*
Ga0137410_114816442	3300012944	Vadose Zone Soil	LASETIKRVRHGAAVTSYADAVSDSLGRIDAVTELKTAWHPVGA*
Ga0164298_104245861	3300012955	Soil	AETVKRARHAPAATSYEAATDDALARLEAVTELKTAWHPVGA*
Ga0164307_101454083	3300012987	Soil	RTRHATPATTYAAATDNALSRLEAVVELKTAWHPVGA*
Ga0164307_114021572	3300012987	Soil	RHGAPATTYEAATDDALARLEAVTELKTAWHPVGA*
Ga0164306_105404122	3300012988	Soil	DRLAAETIKRVRQESGAVSYAAAVDDALERIEAVVELKTAWHPVGA*
Ga0164306_107649961	3300012988	Soil	AAETVKRTRPPTPATTYASATDNALSRLEAVVELKTAWHPVGA*
Ga0164305_111195162	3300012989	Soil	AAELDRLAAETVKRARHAPAATSYEAATDDALARLEAVTELKTAWHPVGA*
Ga0173483_103237201	3300015077	Soil	DKLAAESVTRVRHTTAATSYETATADPLSRIEGLTELKTAWHPVGA*
Ga0137409_111352002	3300015245	Vadose Zone Soil	RELSAELDRLASETIKRVRHGAAVTSYADAVSDSLGRIDAVTELKTAWHPVGA*
Ga0132258_100491951	3300015371	Arabidopsis Rhizosphere	RVRHTDAPNDYAAATADPLSRLEALTELKTAWHPVGA*
Ga0182041_118281632	3300016294	Soil	RLAAETIKRVRHGAAAKSYSDATDDALERLEMVTELKTAWHPVGA
Ga0182035_120614172	3300016341	Soil	SAELDRLAAETIKRVRHGDAATSYEDATDDALERLEAVTELKTAWHPVGA
Ga0187777_100704133	3300017974	Tropical Peatland	AELGRLAAETIKRVRRGAAATSYEDATDDALDRLEAVTELKTAWHPVGA
Ga0184621_102005811	3300018054	Groundwater Sediment	ELDRLAAETVKRTRHGAAAGSYEDATDDALARLEAVTELKTAWHPIGA
Ga0187774_112369161	3300018089	Tropical Peatland	KRVRHGDAATSYEDATDDALERIEAVTELKTAWHPVGA
Ga0190265_105117683	3300018422	Soil	VRHSRPTTSYEEAVRDPLSRLEAVTELKTAWHPVGA
Ga0190268_119408953	3300018466	Soil	AAESVTRVRHAAPTASYATATADPLSRLEAVTELKTAWHPVGA
Ga0193598_10218841	3300018910	Soil	RVRHAAAATDYGEAVRDALGRLEAVVELKTAWHPVGA
Ga0190264_100300871	3300019377	Soil	ELAAESVTRVRHADGSPGYEAATADPLSRLEAVTELKTAWHPVGA
Ga0190264_113841461	3300019377	Soil	ESVTRVRHAAPTVSYEAAVADALSRLEAVTELKTAWHPVGA
Ga0213875_105540091	3300021388	Plant Roots	AELDRLASETIKRVRHGAPATSYGSATSDALERLHAVTELKTAWHPVGA
Ga0210397_106096172	3300021403	Soil	RARHTAAATTYEAATGDALERIEAVTELKTAWHPVGA
Ga0210397_110957201	3300021403	Soil	VRHGAAATSYEDATDDALDRLEAVTELKTAWHPIGA
Ga0210398_111044482	3300021477	Soil	VRHGAAASTYEDATDDALLRLEAVTELKTAWHPVGA
Ga0126371_135146511	3300021560	Tropical Forest Soil	AAETIKRVRHEDAATSYEDATDDALERLEAVTELKTAWHPVGA
Ga0222622_100572621	3300022756	Groundwater Sediment	PAAEIDLRAAESVTRVRHAAPAGSYAVAVADALARLEAVTELKTAWHPIGA
Ga0207685_100826331	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	LSAELDRLAAETIKRVRHGSAAASYAAAVDDALERIEATVELKTAWHPVGA
Ga0207660_109202671	3300025917	Corn Rhizosphere	RHSAAAATYDEAVADALSRIEAVTELKTAWHPIGA
Ga0207706_113638182	3300025933	Corn Rhizosphere	VRRAAPTRSYEAAIADALTRLEAVTELKTAWHPIGA
Ga0207678_117360642	3300026067	Corn Rhizosphere	AELDRLAAETVKRARHAPAATSYEAATDDALARLEAVTELKTAWHPVGA
Ga0207702_119234991	3300026078	Corn Rhizosphere	VKRTRHGAAAVTYEAATDDALARLEAVTELKTAWHPIGA
Ga0209472_11064062	3300026323	Soil	TIKRTRHTTAATTYDAAVSDSLSRLEAVTELKTAWHPIGA
Ga0209074_104582091	3300027787	Agricultural Soil	TVKRARHGAGAASYEAATDDALARLEAVTELKTAWHPIGA
Ga0268266_113611653	3300028379	Switchgrass Rhizosphere	ETIKRARHSAGATTYDEATGNALTRLEAVTELKTAWHPIGA
Ga0307321_10199123	3300028704	Soil	VKRTRHGAAAGSYEDATDDALARLEAVTELKTAWHPIGA
Ga0307276_102019662	3300028705	Soil	DRLAAETVKRARHGTAATTYEAATDDALARLEAVTELKTAWHPVGA
Ga0307301_102385612	3300028719	Soil	ELDRLAAETVKRARHGAPATTYEAATDDALARLEAVTELKTAWHPVGA
Ga0307315_102399541	3300028721	Soil	VKRARHGAPATTYDAATGDSLARLEAVTELKTAWHPVGA
Ga0307315_103002741	3300028721	Soil	VTRVRHADPTRSYALATADALTRLEAVTELKTAWHPVGA
Ga0307320_103263541	3300028771	Soil	KLASESVTRVRHAAPTGSYAEATADPLSRLEAVTELKTAWHPVGA
Ga0302231_105160851	3300028775	Palsa	SHHEAAVSYDEAVEDALERIAAVIELKTAWHPVGA
Ga0307284_104176991	3300028799	Soil	AELDRLAAETVKRARHGAPATTYEAATDDALARLEAVTELKTAWHPVGA
Ga0307305_102039132	3300028807	Soil	AETVKRARHGAPATTYDAATGDSLARLEAVTELKTAWHPVGA
Ga0307289_100477881	3300028875	Soil	TVKRARHGAPATTYDAATGDSLARLEAVTELKTAWHPVGA
Ga0307289_103451911	3300028875	Soil	KRARHGAPAASYEAATDDALARLEAVTELKTAWHPIGA
Ga0307289_103890322	3300028875	Soil	TAPIDELAAESVTRVRHADPTRSYALATADALTRLEAVTELKTAWHPVGA
Ga0307278_102335751	3300028878	Soil	RLAAETVKRARHGAPATTYEAATDDALARLEAVTELKTAWHPVGA
Ga0307300_100711981	3300028880	Soil	ETVKRARHGAAATSYEAATGDSLARLEAVTELKTAWHPIGA
Ga0307300_103311912	3300028880	Soil	RVRHTTPAESYEAATGDPLSRLEALTELKTAWHPVGA
Ga0307277_101351871	3300028881	Soil	KRTRHGAAAASYEAATDDALARLEAVTELKTAWHPIGA
Ga0307304_101744731	3300028885	Soil	TRHGAAAGSYEDATDDALARLEAVTELKTAWHPIGA
Ga0311370_115015092	3300030503	Palsa	AETIKRTRHPRAATSYADAVDDSLERIEAVTELKTAWHPVGA
Ga0302325_125587171	3300031234	Palsa	GRLGAETITRVRRRAAASSYDEAVADSLGRIEALTELKTAWHPIGT
Ga0318538_107163042	3300031546	Soil	RHGAAARSYSDATDDALERLEMVTELKTAWHPVGA
Ga0307469_122204022	3300031720	Hardwood Forest Soil	KLAAESVTRVRHTTPAESYEAATGDPLSRLEAVTELKTAWHPIGA
Ga0318494_102088852	3300031751	Soil	DRLAAETIKRVRHGAAARSYSDATDDALERLEMVTELKTAWHPVGA
Ga0307410_119115731	3300031852	Rhizosphere	AAESVTRVRHAPPTTSYAAATADPLSRLESVTELKTAWHPVGA
Ga0310892_106913711	3300031858	Soil	TRVRHTPASNDYATATADPLSRLEALTELKTAWHPVGA
Ga0310900_106132351	3300031908	Soil	ELDRLAAETVKRTRHGAAAGTYEAATDDALARLEAVTELKTAWHPIGA
Ga0308175_1000050838	3300031938	Soil	LASETIKRTRHSSAAGSYDEAVADALSRLEAVTELKTAWHPIGA
Ga0308175_1028999802	3300031938	Soil	ELAAELDRLAAETVKRTRHGAGAASYEAATDDALARLEAVTEHKTAWHPIGA
Ga0307409_1025911252	3300031995	Rhizosphere	DRLAAESVTRVRHTTASTDYATATVDPLSRLEALTELKTAWHPVGA
Ga0318525_102559412	3300032089	Soil	IKRVRHGAAARSYSDATDDALERLEMVTELKTAWHPVGA
Ga0335080_122666741	3300032828	Soil	ETIKRARHSVAASTYEDATDDALERLEAVTELKTAWHPVGA
Ga0335076_108751281	3300032955	Soil	IKRVRHEDAATSYEDATDDALERLEAVTELKTAWHPVGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092517

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences