NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F092506

Metagenome / Metatranscriptome Family F092506

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092506
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 41 residues
Representative Sequence MSLLAPIRRHRADQTASSGLLRSVRLFRLFLAEQSDPETF
Number of Associated Samples 93
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 96.26 %
Associated GOLD sequencing projects 92
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (69.159 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(43.925 % of family members)
Environment Ontology (ENVO) Unclassified
(44.860 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(43.925 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 39.71%    β-sheet: 0.00%    Coil/Unstructured: 60.29%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF13439Glyco_transf_4 20.56
PF13489Methyltransf_23 0.93
PF13692Glyco_trans_1_4 0.93
PF13579Glyco_trans_4_4 0.93



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A69.16 %
All OrganismsrootAll Organisms30.84 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573004|GZGWRS402H59CDAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Dermacoccus → unclassified Dermacoccus → Dermacoccus sp. Ellin185516Open in IMG/M
3300001593|JGI12635J15846_10546504All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia678Open in IMG/M
3300001661|JGI12053J15887_10634769Not Available508Open in IMG/M
3300005587|Ga0066654_10416100Not Available733Open in IMG/M
3300005591|Ga0070761_11008095Not Available528Open in IMG/M
3300005610|Ga0070763_10610172Not Available633Open in IMG/M
3300006028|Ga0070717_11189445Not Available694Open in IMG/M
3300006059|Ga0075017_101075880All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Dermacoccus → unclassified Dermacoccus → Dermacoccus sp. Ellin185628Open in IMG/M
3300006175|Ga0070712_100096520All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2176Open in IMG/M
3300006176|Ga0070765_100981255All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia799Open in IMG/M
3300006176|Ga0070765_101491262All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia637Open in IMG/M
3300006176|Ga0070765_102126321All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium → Cryptosporangium arvum524Open in IMG/M
3300006804|Ga0079221_11391981Not Available557Open in IMG/M
3300009683|Ga0116224_10339711Not Available714Open in IMG/M
3300009698|Ga0116216_10160198Not Available1383Open in IMG/M
3300009698|Ga0116216_10313017All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia956Open in IMG/M
3300010379|Ga0136449_102637792Not Available715Open in IMG/M
3300012199|Ga0137383_11097792Not Available576Open in IMG/M
3300012206|Ga0137380_10847537Not Available787Open in IMG/M
3300012355|Ga0137369_10312250All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1162Open in IMG/M
3300012984|Ga0164309_11528970Not Available571Open in IMG/M
3300014657|Ga0181522_10046479All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2434Open in IMG/M
3300015373|Ga0132257_101267378Not Available935Open in IMG/M
3300016319|Ga0182033_10733560All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia867Open in IMG/M
3300016319|Ga0182033_12020789Not Available525Open in IMG/M
3300016341|Ga0182035_10453289All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1088Open in IMG/M
3300016357|Ga0182032_10678454All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia863Open in IMG/M
3300016387|Ga0182040_10661533Not Available851Open in IMG/M
3300017822|Ga0187802_10175914Not Available820Open in IMG/M
3300017924|Ga0187820_1295561Not Available532Open in IMG/M
3300017928|Ga0187806_1105001Not Available905Open in IMG/M
3300017932|Ga0187814_10316937Not Available599Open in IMG/M
3300017942|Ga0187808_10230657Not Available826Open in IMG/M
3300017943|Ga0187819_10080754All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces1941Open in IMG/M
3300017943|Ga0187819_10488712Not Available703Open in IMG/M
3300017959|Ga0187779_10600930Not Available736Open in IMG/M
3300017974|Ga0187777_10135712All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1636Open in IMG/M
3300017974|Ga0187777_11485102Not Available502Open in IMG/M
3300018433|Ga0066667_11272134Not Available642Open in IMG/M
3300020150|Ga0187768_1088856Not Available701Open in IMG/M
3300020582|Ga0210395_10605089Not Available822Open in IMG/M
3300020582|Ga0210395_11428998Not Available504Open in IMG/M
3300021170|Ga0210400_11055780Not Available659Open in IMG/M
3300021401|Ga0210393_11510202Not Available534Open in IMG/M
3300021404|Ga0210389_10791261Not Available741Open in IMG/M
3300021405|Ga0210387_11504896Not Available576Open in IMG/M
3300021560|Ga0126371_12422125Not Available635Open in IMG/M
3300025898|Ga0207692_11082457Not Available531Open in IMG/M
3300025931|Ga0207644_11710341Not Available527Open in IMG/M
3300025939|Ga0207665_10568803Not Available882Open in IMG/M
3300026899|Ga0209326_1013736Not Available626Open in IMG/M
3300027590|Ga0209116_1063524All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia803Open in IMG/M
3300027676|Ga0209333_1129748All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia681Open in IMG/M
3300027889|Ga0209380_10639468All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia614Open in IMG/M
3300027905|Ga0209415_10252738Not Available1583Open in IMG/M
3300029882|Ga0311368_10254585Not Available1355Open in IMG/M
3300030582|Ga0210261_1224725Not Available503Open in IMG/M
3300031544|Ga0318534_10190628All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1184Open in IMG/M
3300031544|Ga0318534_10215756All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1107Open in IMG/M
3300031546|Ga0318538_10119025Not Available1378Open in IMG/M
3300031561|Ga0318528_10218205All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1022Open in IMG/M
3300031572|Ga0318515_10254184Not Available942Open in IMG/M
3300031681|Ga0318572_10872186Not Available535Open in IMG/M
3300031682|Ga0318560_10388773Not Available755Open in IMG/M
3300031682|Ga0318560_10748489Not Available528Open in IMG/M
3300031708|Ga0310686_108901995Not Available841Open in IMG/M
3300031719|Ga0306917_10551375Not Available906Open in IMG/M
3300031723|Ga0318493_10041761All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces varsoviensis2136Open in IMG/M
3300031747|Ga0318502_10642771All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia640Open in IMG/M
3300031751|Ga0318494_10151115Not Available1307Open in IMG/M
3300031765|Ga0318554_10510405Not Available680Open in IMG/M
3300031765|Ga0318554_10848540Not Available510Open in IMG/M
3300031770|Ga0318521_10148956Not Available1328Open in IMG/M
3300031771|Ga0318546_10169504Not Available1480Open in IMG/M
3300031771|Ga0318546_11090526Not Available561Open in IMG/M
3300031781|Ga0318547_10360524All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia889Open in IMG/M
3300031795|Ga0318557_10332261Not Available698Open in IMG/M
3300031796|Ga0318576_10352243Not Available696Open in IMG/M
3300031799|Ga0318565_10207423All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia953Open in IMG/M
3300031819|Ga0318568_10494210Not Available763Open in IMG/M
3300031821|Ga0318567_10767764Not Available546Open in IMG/M
3300031831|Ga0318564_10198122All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia894Open in IMG/M
3300031832|Ga0318499_10126397All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia995Open in IMG/M
3300031833|Ga0310917_10459808All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia866Open in IMG/M
3300031880|Ga0318544_10439047Not Available508Open in IMG/M
3300031896|Ga0318551_10666399Not Available602Open in IMG/M
3300031897|Ga0318520_10038499All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces2446Open in IMG/M
3300031897|Ga0318520_11020253Not Available523Open in IMG/M
3300031946|Ga0310910_10996190Not Available655Open in IMG/M
3300031947|Ga0310909_10332607Not Available1275Open in IMG/M
3300031954|Ga0306926_12926363Not Available512Open in IMG/M
3300031962|Ga0307479_10405631Not Available1348Open in IMG/M
3300032008|Ga0318562_10223671All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1091Open in IMG/M
3300032008|Ga0318562_10890424Not Available508Open in IMG/M
3300032009|Ga0318563_10408277Not Available735Open in IMG/M
3300032059|Ga0318533_11417972Not Available507Open in IMG/M
3300032060|Ga0318505_10413664Not Available637Open in IMG/M
3300032065|Ga0318513_10608088Not Available535Open in IMG/M
3300032066|Ga0318514_10374986Not Available754Open in IMG/M
3300032066|Ga0318514_10626600Not Available572Open in IMG/M
3300032076|Ga0306924_11974493All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae602Open in IMG/M
3300032089|Ga0318525_10313821Not Available805Open in IMG/M
3300032895|Ga0335074_10330478All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1714Open in IMG/M
3300032896|Ga0335075_10976517All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia764Open in IMG/M
3300033134|Ga0335073_11280992Not Available727Open in IMG/M
3300033475|Ga0310811_10689389Not Available992Open in IMG/M
3300034817|Ga0373948_0185745Not Available536Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil43.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil7.48%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment6.54%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil5.61%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil4.67%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.67%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.74%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.80%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.80%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.80%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.93%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.93%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.93%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil0.93%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.93%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.93%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.93%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.93%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.93%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573004Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300009683Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017928Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300020150Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MGEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026899Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027590Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027676Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300029882III_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030582Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO145-ARE022SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031795Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031799Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031831Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20EnvironmentalOpen in IMG/M
3300031832Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031880Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032009Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032060Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032089Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300033475Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YCEnvironmentalOpen in IMG/M
3300034817Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FG2_062486302189573004Grass SoilMSLMAPTRRHSADQAPPSGLLRSVRLFRLFLAEQSDPEKFYSSLA
JGI12635J15846_1054650413300001593Forest SoilMSLLAPIRRRRGNQAARSGVLRSIRLFRLFLGEQNDQETFYVSLAEDAVQQVAE
JGI12053J15887_1063476913300001661Forest SoilMSLMAPTSRQCADQATPVGLRRSVRLFRLFLAEQSDPEK
Ga0066654_1041610013300005587SoilMSLMAPTRRHSADQAPPSGLLRSIRLFRLFLAEQSDPE
Ga0070761_1100809523300005591SoilMSLLAPIRRHRAEQAARSGLLRSVRLFRLFLAEQAEPE
Ga0070763_1061017213300005610SoilMSLLGPIRRRRGNQAARSGVLRSIRLFRLFLGEQND
Ga0070717_1118944513300006028Corn, Switchgrass And Miscanthus RhizosphereMSLLAPIRRHRVDQHSVDRTTRSGLLRSVRLFRLF
Ga0075017_10107588013300006059WatershedsMGLLAPIRRHRADQANLSPDQATHSGLRRSVRLFRLFMAEQTDPEKFYASL
Ga0070712_10009652033300006175Corn, Switchgrass And Miscanthus RhizosphereLSLLAPNRRYRADQATPSGLRRSVRLFRLFLAEQSDPE
Ga0070765_10098125513300006176SoilMSLLAPTRRHRADQAPPSGLRRSVRLFRLFLAEQSDP
Ga0070765_10149126223300006176SoilMSLLGPIRRRRGNQAARSGVLRSIRLFRLFLGEQNDQETFYLSLAEDAVQQVAEHT
Ga0070765_10212632113300006176SoilMSLLAPTRRHCADQPPPAGLRRSVRLFRLFRAEQSDPEKFYAS
Ga0079221_1139198123300006804Agricultural SoilMSLLAPIRRRSADQATRSADQETSSGLRRSVRLFRLFLAEQTDPEKFYAGLAEAAV
Ga0116224_1033971113300009683Peatlands SoilMSLLAPIRRHPADQANSSGLLRSVRLFLLFLAEQAEPEKFYA
Ga0116216_1016019813300009698Peatlands SoilMSLLAPIRRRPAAQAKSSGLLRSVRLFRLFLAEQAEPEK
Ga0116216_1031301723300009698Peatlands SoilMSLQAPIRRDRADQTARSVVLRSVRLFRLFLAEQSDPETFYTG
Ga0136449_10263779223300010379Peatlands SoilMSLLAPIRRHRADQTAHSGVLRSVRLFRLFLAEQSDPE
Ga0137383_1109779213300012199Vadose Zone SoilMSLLSPIRRRRADQATRSGLLRSIRLFRMFLAEQADPEKFYAYLAEDAVQQVAEHC
Ga0137380_1084753713300012206Vadose Zone SoilMSLLAPNRRYRADQATPSGLRRSVRLFRLFLAEQSDPEK
Ga0137369_1031225013300012355Vadose Zone SoilMSLMAPTRRHSADQAPPSGLLRSVRLFRLFLADQRDPEQFYAS
Ga0164309_1152897013300012984SoilMSLMAPTRRHSADQAPNSGLLRSIRLFRLFLADQGDPGRFNGAWP
Ga0181522_1004647913300014657BogMSLLGPIRRRRGNQAARSGVRRSIRLFRLFLGEQNDQETFYV
Ga0132257_10126737813300015373Arabidopsis RhizosphereMSLMAPTRRHSADQAPPSGLLRSVRLFRLFLAEQSDPEKFYASLAEDA
Ga0182033_1073356023300016319SoilMSLLAPRRPRADHTASSGLLRSVRLFRLFLAEQSDPE
Ga0182033_1202078913300016319SoilMSLLAPNRLDRADQAVPSGLKRSFRLFRLFLAEQSDPEQFYASLATDAVQQ
Ga0182035_1045328923300016341SoilMSLQAPIRRHGANQASSTGLLRSVRLFRLFLSEQSDPETFY
Ga0182032_1067845413300016357SoilMSLLAPIRRHRADQTASSGLLRSVRLFRLFLAEQSDPETF
Ga0182040_1066153323300016387SoilMSLLAPNRRHVDQAAGSGLLRSVRLFRLFLAEQTDPEKFY
Ga0187802_1017591413300017822Freshwater SedimentMSLPAPIRRHRDDQTARSGVLRSVRLFRLFLAEQSDPEAFYTGLAED
Ga0187820_129556123300017924Freshwater SedimentMSLLAPRRPRADQTASSGLLRSIRLFRLFLAEQSDPETFYGNLAEDAVQQ
Ga0187806_110500123300017928Freshwater SedimentMSLLAPIRRHRSDQAAPSGLLRSVRLFRLFLAEQTDPETFYAS
Ga0187814_1031693723300017932Freshwater SedimentMSLQAPIRRDRADQTARSGVLRSVRLFRLFLAEQS
Ga0187808_1023065713300017942Freshwater SedimentMSLLAPIRRHRAGQAADSGLLRSVRLFRLFLAEQSDPEK
Ga0187819_1008075433300017943Freshwater SedimentMSLPAPIRRHRDDQTARSGVLRSVRLFRLFLAEQSDPEAFY
Ga0187819_1048871223300017943Freshwater SedimentMSLLAPIRRHRADQAAGSGLLRSVRLFRLFLAEQSDPETFYASLAED
Ga0187779_1060093013300017959Tropical PeatlandMSLLAPDRHHPADQARSSGLLRSLRLFRLFLAEQTDPEKFYAS
Ga0187777_1013571213300017974Tropical PeatlandMSLLAPNRRHLDQAAGTGLLRSVRLFRLFLAEQADPEKFYTSLAED
Ga0187777_1148510213300017974Tropical PeatlandMSLLAPIRHRADQTARSGLLRSVRLFRLFLAEQSDPETFYTSLAE
Ga0066667_1127213413300018433Grasslands SoilMSLMAPTSRPCSDQAPPVRLRRSVRLFRSFPAQHGVPE
Ga0187768_108885623300020150Tropical PeatlandMSLLAPNRRHLDQAAGTGLLRSVRLFRLFLAEQADPEKFYT
Ga0210395_1060508923300020582SoilMSLLAPFRRRAAPSGVRRSVRLFRLFLAEQSDPEAFYVSLAEDA
Ga0210395_1142899813300020582SoilMSLMAPVSRQCADQATPAGLRRSVRLFRLFLAEQSDPEKFYGSLA
Ga0210400_1105578013300021170SoilLSLLAPNRRYRADQATPSGLRRSVRLFRLFLAEQS
Ga0210393_1151020213300021401SoilMSLLAPFRRRAAPSGVRRSVRLFRLFLAEQSDPEAF
Ga0210389_1079126113300021404SoilMSLLAPTRRHCADQPPPAGLRRSVRLFRLFRAEQSDPEKFYVSLAEDA
Ga0210387_1150489613300021405SoilLSLLAPNRRYRADQATPSGLRRSVRLFRLFRAEQG
Ga0126371_1242212523300021560Tropical Forest SoilMSLQAPIRRHGADQAPPTGLLRSVRLFRLFLAEQSDPEKFY
Ga0207692_1108245713300025898Corn, Switchgrass And Miscanthus RhizosphereMSLLAPRRDRANEDGATPATRSGLLRSFRLFRLFLAEQSDP
Ga0207644_1171034123300025931Switchgrass RhizosphereMSLLAPNRRNRVDQHRVDRLTRSGLLRSVRLFRLFLA
Ga0207665_1056880313300025939Corn, Switchgrass And Miscanthus RhizosphereMSLTAPTRRHSADQAPPSGLLRSVRLFRLFLAEQSDPEKFYASLAED
Ga0209326_101373613300026899Forest SoilMSLMAPTRRHSADQAPSSGLLRSIRLFRLFLAEQSDPEMFYASLAED
Ga0209116_106352423300027590Forest SoilMSLLAPIRRRRGNRAARSGVLRSIRLFRLFLGEQTNRETFYVS
Ga0209333_112974813300027676Forest SoilMSLLAPIRRHRAEQAAHSGLRRSVGLFRLFLAEQAEPEKFYAGLAEDAV
Ga0209380_1063946813300027889SoilMSLLAPIRRHRAEQAARSGLLRSVRLFRLFLAEQAEP
Ga0209415_1025273813300027905Peatlands SoilMSLLAPFRRRRAASFGLLRSVRLFRLFLAEQSDPEA
Ga0311368_1025458513300029882PalsaMSLLAPIRRRRGNQAARSGVLRSIRLFRLFLGEQNDQETFYVSLA
Ga0210261_122472523300030582SoilMSLLAPIRRHRADQTARSGVLRSVRLFRLFLAEQSDPE
Ga0318534_1019062813300031544SoilMSLQAPIRRDCADQAPPTGLLRSVRLFRLFLAEQSDPE
Ga0318534_1021575623300031544SoilMSLLAPIRRHPADQPGRSGLLRSVRLFRLFLAEQTDP
Ga0318538_1011902513300031546SoilMSLLAPNRLDRADQAAPSGLKRSFRLFRLFLAEQSDPEKFYASLATD
Ga0318528_1021820523300031561SoilMSLLAPNRLDRADQAAPSGLKRSFRLFRLFLAEQSDPEKF
Ga0318515_1025418423300031572SoilMSLLAPNRLDRADQAAPSGLKRSFRLFRLFLAEQSDPEQ
Ga0318572_1087218613300031681SoilMGLMAPIRRRRVDPAARSGLLRSVRLFRLFLAEQADPDTFYTSLAED
Ga0318560_1038877323300031682SoilMSLLAPIRRHRVDQAARSGLLRSVRLFRLFLAEQTDPEKFY
Ga0318560_1074848923300031682SoilMSLLAPNRRHRADQAASSGLGRSVRLFRLFLAEQADPE
Ga0310686_10890199523300031708SoilMSLLAPIRRHRADPTARSGVLRSVRLFRLFLAEQS
Ga0306917_1055137513300031719SoilMSLQAPIRRHGANQASSTGLLRSVRLFRLFLSEQSDPETFYASLAED
Ga0318493_1004176133300031723SoilMSLQAPIRRHGANQASSTGLLRSVRLFRLFLSEQSDPETFYARLAE
Ga0318502_1064277123300031747SoilMSLLAPRRLHADHPASSGLLRSVRLFRLFLAEQSDP
Ga0318494_1015111523300031751SoilMSLQAPIRRDCADQAPPTGLLRSVRLFRLFLAEQSD
Ga0318554_1051040523300031765SoilMSLLAPNRRLPGDQAAPSGLLRSVRLFRLFLAEQTD
Ga0318554_1084854013300031765SoilMSLLAPNRHHRADQAGRSGLLRSVRLFRLFLAEQTDP
Ga0318521_1014895623300031770SoilMSLQAPIRRHGANQASSTGLLRSVRLFRLFLSEQSDPETFYA
Ga0318546_1016950413300031771SoilMSLQAPIRRHSADQAPPAGLLRSVRLFRLFLAEQSDPEKFYASLAE
Ga0318546_1109052623300031771SoilMSLLAPRRPRADHPASSGLLRSVRLFRLFLAEQSD
Ga0318547_1036052413300031781SoilMSLLAPRRPRADHTASSGLLRSVRLFRLFLAEQSDP
Ga0318557_1033226113300031795SoilMSLLAPNRRLPGDQAAPSGLLRSVRLFRLFLAEQTDPETFYSGLA
Ga0318576_1035224323300031796SoilMSLLAPRRPRADHPASSGLLRSVRLFRLFLAEQSDP
Ga0318565_1020742323300031799SoilMSLLAPRRPRADHTASSGLLRSVRLFRLFLAEQSDPETFYTSLAED
Ga0318568_1049421023300031819SoilMSLLAPTRRHCADQPPPAGLRRSVRLFRLFRAEQSDPEKFY
Ga0318567_1076776413300031821SoilMSLQAPIRRHSADQAPPTGLLRSVRLFRLFLAEQSDPEKFYASLAEDAV
Ga0318564_1019812213300031831SoilMSLLAPRRPRADHTASSGLLRSVRLFRLFLAEQSDPETFYTSLA
Ga0318499_1012639713300031832SoilMSLLAPRRLHADHPASSGLLRSVRLFRLFLAEQSDPETF
Ga0310917_1045980813300031833SoilMSLLAPRRPRADHPASSGLLRSVRLFRLFLAEQSDPETFYTSLA
Ga0318544_1043904723300031880SoilMSLLAPNRRHVDQAAGSGLLRSVRLFRLFLAEQTDPEKF
Ga0318551_1066639913300031896SoilMGLMAPIRRRRVDPAARSGLLRSVRLFRLFLAEQAD
Ga0318520_1003849933300031897SoilMSLLAPIRRHRVDQAARSGLLRSVRLFRLFLAEQTDPEKFYTSLA
Ga0318520_1102025313300031897SoilMSLLAPRRPRADHTASSGMLRSVRLFRLFLAEQSDPETFYTSLAEY
Ga0310910_1099619013300031946SoilMSLQAPIRRHSADQAPPAGLLRSVRLFRLFLAEQS
Ga0310909_1033260723300031947SoilMSLLAPNRLDRADQAAPSGLKRSFRLFRLFLAEQSDPEKFYASLATDAVQ
Ga0306926_1292636313300031954SoilMSLQAPIRRHSADHDQAPPAGLLRSVRLFRLFLAEQSDPEKFY
Ga0307479_1040563123300031962Hardwood Forest SoilMSLLAPIRRYRADQATGSGLLRSVRLFRLFLAEQTEPDKFYA
Ga0318562_1022367123300032008SoilMSLQAPIRRHSADQAPPTGLLRSVRLFRLFLAEQSDP
Ga0318562_1089042413300032008SoilMSLQAPIRRDCADQAPPTGLLRSVRLFRLFLAEQSDPEKFYASLATDAVQQ
Ga0318563_1040827723300032009SoilMSLQAPIRRHSADHDQAPPAGLLRSVRLFRLFLAEQSDPEKF
Ga0318533_1141797223300032059SoilMSLLAPIRRHRVDQATRSGLLRSVRLFRLFMAEQTDPERFYA
Ga0318505_1041366413300032060SoilMSLLAPNRLDRADQAAPSGLKRSFRLFRLFLAEQSDPEQFYASLATDAVQQ
Ga0318513_1060808823300032065SoilMSLLAPIRRHHADQTASSGLLRSIRLFRLFLAEQSDPETFY
Ga0318514_1037498623300032066SoilMSLLAPNRRHRADQAASSSGLGRSVRLFRLFLAEQTDAEAFYARL
Ga0318514_1062660013300032066SoilMSLLAPIRRHRADQTASSGLLRSVRLFRLFLAEQSD
Ga0306924_1197449313300032076SoilMSLLAPIRRHRADQVAGSGLLRSVRLFRLFLAEQS
Ga0318525_1031382113300032089SoilMSLQAPIRRHSADHDQAPPAGLLRSVRLFRLFLAE
Ga0335074_1033047833300032895SoilMSLLAPIRRRRAGQAARSGLLRSIRLFRLFLAEQADPER
Ga0335075_1097651723300032896SoilMSLLAPIRRHGTDPAARSGLLRSVRLFRLFLAEQA
Ga0335073_1128099213300033134SoilMGLLAPTRRHHADQANPPPDQAAGTGLRRSVRLFRLFMAEQS
Ga0310811_1068938923300033475SoilMSLMAPTSRQCADQATPVGLRRSVRLFRLFLAEQSDPEKFYSS
Ga0373948_0185745_2_1363300034817Rhizosphere SoilMSLMAPTRRHSAVQAPPSGLLRSVRLFRLFLAEQSDPEKFYASLA


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