Metagenome Family F092492

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092492
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	69 residues
Representative Sequence	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVVRLM
Number of Associated Samples	100
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.74 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	96.26 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.065 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.234 % of family members)
Environment Ontology (ENVO)	Unclassified (39.252 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.794 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 40.00% β-sheet: 0.00% Coil/Unstructured: 60.00%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00285	Citrate_synt	23.36
PF00535	Glycos_transf_2	7.48
PF00041	fn3	3.74
PF13607	Succ_CoA_lig	3.74
PF07715	Plug	1.87
PF12439	GDE_N	0.93
PF01479	S4	0.93
PF04151	PPC	0.93
PF02371	Transposase_20	0.93
PF00498	FHA	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0372	Citrate synthase	Energy production and conversion [C]	23.36
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	74.77 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	74.77 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	51.40 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2.80 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	51.40 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	2.80 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	51.40 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	2.80 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	51.40 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1.87 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	51.40 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.93 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.93 %
Unclassified	root	N/A	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16894725	All Organisms → cellular organisms → Bacteria	1587	Open in IMG/M
2088090015\|GPICI_9199789	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1161	Open in IMG/M
2209111022\|2221215890	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	760	Open in IMG/M
3300000956\|JGI10216J12902_112486711	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300002126\|JGI24035J26624_1032214	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	573	Open in IMG/M
3300004153\|Ga0063455_100341988	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	847	Open in IMG/M
3300004157\|Ga0062590_102868039	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	516	Open in IMG/M
3300004479\|Ga0062595_101491140	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	623	Open in IMG/M
3300005294\|Ga0065705_10903702	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	575	Open in IMG/M
3300005295\|Ga0065707_10049076	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300005343\|Ga0070687_101301096	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	540	Open in IMG/M
3300005454\|Ga0066687_10364722	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	830	Open in IMG/M
3300005552\|Ga0066701_10933861	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	513	Open in IMG/M
3300005554\|Ga0066661_10922711	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
3300005556\|Ga0066707_10274913	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1101	Open in IMG/M
3300005576\|Ga0066708_10060939	All Organisms → cellular organisms → Bacteria	2142	Open in IMG/M
3300006175\|Ga0070712_100345934	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1215	Open in IMG/M
3300006797\|Ga0066659_10338131	Not Available	1163	Open in IMG/M
3300006844\|Ga0075428_101077851	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300007255\|Ga0099791_10297882	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	769	Open in IMG/M
3300007265\|Ga0099794_10617341	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	575	Open in IMG/M
3300009090\|Ga0099827_11937405	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	513	Open in IMG/M
3300009137\|Ga0066709_101878110	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300010048\|Ga0126373_10109202	All Organisms → cellular organisms → Bacteria	2571	Open in IMG/M
3300010301\|Ga0134070_10484459	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300010326\|Ga0134065_10187517	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	742	Open in IMG/M
3300010336\|Ga0134071_10466495	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300010373\|Ga0134128_10604790	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1220	Open in IMG/M
3300010396\|Ga0134126_12861978	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
3300010397\|Ga0134124_11377958	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300010401\|Ga0134121_10778832	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	916	Open in IMG/M
3300012096\|Ga0137389_10410310	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1157	Open in IMG/M
3300012198\|Ga0137364_10828275	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300012198\|Ga0137364_10992564	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	635	Open in IMG/M
3300012199\|Ga0137383_11031674	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	598	Open in IMG/M
3300012202\|Ga0137363_10906179	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	749	Open in IMG/M
3300012205\|Ga0137362_10446548	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1119	Open in IMG/M
3300012208\|Ga0137376_10313442	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1361	Open in IMG/M
3300012208\|Ga0137376_10912628	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	754	Open in IMG/M
3300012209\|Ga0137379_10410724	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1263	Open in IMG/M
3300012285\|Ga0137370_10704097	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	627	Open in IMG/M
3300012349\|Ga0137387_11081844	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	572	Open in IMG/M
3300012356\|Ga0137371_10872847	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300012356\|Ga0137371_11113866	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	593	Open in IMG/M
3300012361\|Ga0137360_11224531	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	649	Open in IMG/M
3300012683\|Ga0137398_10298009	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1083	Open in IMG/M
3300012923\|Ga0137359_11795182	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300012929\|Ga0137404_10358731	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300012930\|Ga0137407_10628940	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300012930\|Ga0137407_12336149	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
3300012944\|Ga0137410_11545911	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	580	Open in IMG/M
3300012955\|Ga0164298_10214852	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1135	Open in IMG/M
3300012961\|Ga0164302_10430595	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	910	Open in IMG/M
3300012977\|Ga0134087_10542844	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	592	Open in IMG/M
3300012987\|Ga0164307_10968330	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	690	Open in IMG/M
3300013306\|Ga0163162_12953573	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300013307\|Ga0157372_13098688	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	531	Open in IMG/M
3300013760\|Ga0120188_1038803	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300014157\|Ga0134078_10498764	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
3300014166\|Ga0134079_10504983	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	584	Open in IMG/M
3300017656\|Ga0134112_10274599	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300018052\|Ga0184638_1318136	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	524	Open in IMG/M
3300018076\|Ga0184609_10312651	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	734	Open in IMG/M
3300018431\|Ga0066655_10098269	All Organisms → cellular organisms → Bacteria	1635	Open in IMG/M
3300019361\|Ga0173482_10366134	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	658	Open in IMG/M
3300019869\|Ga0193705_1009570	All Organisms → cellular organisms → Bacteria	2119	Open in IMG/M
3300019881\|Ga0193707_1089856	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	930	Open in IMG/M
3300019882\|Ga0193713_1204441	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
3300019883\|Ga0193725_1096141	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	705	Open in IMG/M
3300019996\|Ga0193693_1058812	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	594	Open in IMG/M
3300019999\|Ga0193718_1122698	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300020008\|Ga0193757_1001766	All Organisms → cellular organisms → Bacteria	1685	Open in IMG/M
3300021411\|Ga0193709_1001225	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	7629	Open in IMG/M
3300022694\|Ga0222623_10271253	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300022756\|Ga0222622_10581192	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	807	Open in IMG/M
3300024279\|Ga0247692_1017988	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1079	Open in IMG/M
3300025315\|Ga0207697_10155550	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300025916\|Ga0207663_11036221	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	659	Open in IMG/M
3300025939\|Ga0207665_11363297	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
3300026285\|Ga0209438_1160031	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	591	Open in IMG/M
3300026300\|Ga0209027_1319498	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	501	Open in IMG/M
3300026305\|Ga0209688_1066961	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	648	Open in IMG/M
3300026323\|Ga0209472_1199696	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	683	Open in IMG/M
3300026557\|Ga0179587_10089553	All Organisms → cellular organisms → Bacteria	1845	Open in IMG/M
3300026557\|Ga0179587_10146510	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1469	Open in IMG/M
3300026557\|Ga0179587_10623277	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300027400\|Ga0207560_104212	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	590	Open in IMG/M
3300027903\|Ga0209488_10590297	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	807	Open in IMG/M
3300028381\|Ga0268264_12127659	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	569	Open in IMG/M
3300028589\|Ga0247818_11397160	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	505	Open in IMG/M
3300028715\|Ga0307313_10227519	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	579	Open in IMG/M
3300028768\|Ga0307280_10220597	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	675	Open in IMG/M
3300028771\|Ga0307320_10400165	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300028790\|Ga0307283_10065101	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	897	Open in IMG/M
3300028814\|Ga0307302_10063603	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1729	Open in IMG/M
3300028814\|Ga0307302_10252779	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	863	Open in IMG/M
3300028819\|Ga0307296_10737975	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	537	Open in IMG/M
3300028824\|Ga0307310_10515958	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	603	Open in IMG/M
3300028884\|Ga0307308_10378988	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	678	Open in IMG/M
3300028885\|Ga0307304_10365714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	647	Open in IMG/M
3300031231\|Ga0170824_107057871	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300031446\|Ga0170820_10914974	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1361	Open in IMG/M
3300031469\|Ga0170819_10194704	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	619	Open in IMG/M
3300031547\|Ga0310887_10659138	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300031716\|Ga0310813_12345181	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	506	Open in IMG/M
3300032205\|Ga0307472_101486648	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	661	Open in IMG/M
3300033412\|Ga0310810_11408362	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	531	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.39%
Host-Associated	Host-Associated	5.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.65%
Plants	Host-Associated → Plants	5.61%
Aquatic	Environmental → Aquatic	3.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.65%
Sediment	Environmental → Aquatic → Sediment	3.74%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.98%
Loam	Environmental → Terrestrial → Soil → Loam	4.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	62.62%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.02%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.28%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.54%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2209111022	Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002126	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Host-Associated	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013760	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C3.rep2	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019996	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020008	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m2	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024279	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027400	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-11 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01107020	2088090014	Soil	VKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVVRLMAPVIQNNDLRSLP
GPICI_00568160	2088090015	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSAGPTQQSNRSVGAQDALGTQTPDVVRLMGPVIQNNDLRS
2222059637	2209111022	Grass Soil	MKKKSTSQSAFFNLRVLIGAFLCLGAVAVALFGAGVFAQTRQSNRSATAQDAPGTQSPDVVQ
JGI10216J12902_1124867111	3300000956	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFGAGVFAQPKGAQQSSRSTTRQDAPGTQRPDVVQMVGPVLLNTNLRDLPYIPPAPQIIQE
JGI24035J26624_10322142	3300002126	Corn, Switchgrass And Miscanthus Rhizosphere	MKKKSTSQSAFFNVRVLIAAVFCLGALAVALFAQTKSAGPTQQSNRSVGAQDAPRTQTPDVLPLMGPV
Ga0063455_1003419881	3300004153	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSAKPTQQRNHSGGAQDSPGTQTPDVVRLLGPVIENNDLRSLPYVAPNAE
Ga0062590_1028680391	3300004157	Soil	MKKKFTSQSAFFNLRVLIGAFLCLGAVAVALFAAGTRQTNRSAGAQDAPGTQAPEVVQLVGPVA
Ga0062595_1014911401	3300004479	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSAKPAQQRNHSGGAQDAPGTQTPDGVGL
Ga0065705_109037022	3300005294	Switchgrass Rhizosphere	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSANPTQQSNRSVGAQDAP
Ga0065707_100490762	3300005295	Switchgrass Rhizosphere	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNGSVGAQDAPGTQTPDVVRLMGPVIQNNDL
Ga0070687_1013010961	3300005343	Switchgrass Rhizosphere	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSANPTQQSNRSVGAQDAPGTQTPDVVRLMGPVIQNNDLRSLPYVA
Ga0066687_103647221	3300005454	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARSTQQSNRSVGAQDAPGTQTPD
Ga0066701_109338611	3300005552	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVVRLM
Ga0066661_109227111	3300005554	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARSTQQSNRSVGAQDAPGTQTP
Ga0066707_102749132	3300005556	Soil	MKKKSTSQSAFFNLRVLIGAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTP
Ga0066708_100609391	3300005576	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTRSARPTQQNNRSVGAQDAPGTQTPDVVRLMGPVI
Ga0070712_1003459343	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKTNPTSQSAFFNLRVLIAAVFCLGALGVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVVRLMGPV
Ga0066659_103381311	3300006797	Soil	MKNKSTSQSAFFYLRVLITGVFCLGALAVALFAQTQSARQTQQSNRSVGAQDAPGTQTPDVVRLMGPVIQNNDLRSLPYVAPN
Ga0075428_1010778511	3300006844	Populus Rhizosphere	MKKQSTSQSAFFNVRVLIAAVFCLGALAVALFAQTKSARPTQQNDRSVGAQDAPGTQ
Ga0099791_102978821	3300007255	Vadose Zone Soil	MKKKSTSQSAFFNLRVLVAAVFCLGALAVALFAQTKSAGSTQQSNRSVGAQDAPGTQTPD
Ga0099794_106173412	3300007265	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARSTQQSNRSVGAQDAPGTQTPDLVQLIGPVILNKDLRDLPYLV
Ga0099827_119374051	3300009090	Vadose Zone Soil	MKRKSTSQSAFFNLRVLIGAVFCLGALAVALFAQTKSARSTQQSNRSVGAQDAPGMQTPDVVQLIGPVI
Ga0066709_1018781101	3300009137	Grasslands Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVVRLMGPVIQNNDLRS
Ga0126373_101092021	3300010048	Tropical Forest Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQSNRSVGAQDATGTQAPDVVQLMGPVIQNNDLRS
Ga0134070_104844592	3300010301	Grasslands Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARSTQQSNRSVGAQDAPGTQTPDLVQ
Ga0134065_101875171	3300010326	Grasslands Soil	MKKKSTSQSAFFNLRVLIAAIFCLGALAVALFAQTRSARPTQQNNRSVCAQDAPGTQTPDVVRL
Ga0134071_104664951	3300010336	Grasslands Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTRSARPTQQSNRSVGAQDAPGTQTPDVVR
Ga0134128_106047903	3300010373	Terrestrial Soil	MKRKSTSESAFFNLRVLIAAVFCLGALAVALFAQTKSANPTQQSNRSVGTQDAPGTQTPDVVRLIGPV
Ga0134126_128619782	3300010396	Terrestrial Soil	MKTNPTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGEQDAPGTQTPDVVRLTAPVIQNNDLR
Ga0134124_113779582	3300010397	Terrestrial Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSAGPTQQSNRSIGAQDAPGTQTPDVVRLMGPVIQNNDLRSLPYVAPNP
Ga0134121_107788321	3300010401	Terrestrial Soil	MTRKSTSESAFFNLRVLIAAVFCLGALAVALFAQTKSAGPTQQGNRSVGAQDAPGTQTPDVAQLIGPVIL
Ga0137389_104103101	3300012096	Vadose Zone Soil	MKRKSTSQSAFFNLRVLIGAVFCLGALAVALFAQTKSARPTQQSNRSVGAEDAPGTQTPD
Ga0137364_108282751	3300012198	Vadose Zone Soil	MKKKSTSQSAFFNVRVLIAAVFCLGALAVALFAQTKSAGPTQQSNRSVGAQDAPRTQTPD
Ga0137364_109925642	3300012198	Vadose Zone Soil	MKRKSTSQSAFLNLRVLLASVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVVRLMGPVIQNNDLRSLPYVAPN
Ga0137383_110316741	3300012199	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLAALAVALFAQTKSARSTQQSNRSVGAQDAPGTQTPDLVQLIGPVILNK
Ga0137363_109061792	3300012202	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDLVQLIGPVILNKDLRDLPYIVP
Ga0137362_104465482	3300012205	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARSTQQSNRSVGAQDAPGTQTPDLVQLIGPVILNKDLR
Ga0137376_103134422	3300012208	Vadose Zone Soil	MKKKSTSQSAFFILRVLIAAVFCLGALAVALFAQTKSARPTQQGNPAVDAQDAPGTQTPDVVR
Ga0137376_109126282	3300012208	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARSTQQSNRSVGAQDAPGTQT
Ga0137379_104107241	3300012209	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQMPD
Ga0137370_107040972	3300012285	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARSTQQSNRSVGAQDAPGTQTPDLVQLIGPVILN
Ga0137387_110818441	3300012349	Vadose Zone Soil	MKRKSTSQSAFFNLRVLIGAVFCLGALAVALFAQTKSARSTQQSNRSVGAQDAPGTQTPDVVRLMGPVIQNNDLRDLPY
Ga0137371_108728471	3300012356	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLGGLAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVFRLMGPVIQNNDLPS
Ga0137371_111138662	3300012356	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVFRLMGPVIQ
Ga0137360_112245311	3300012361	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSAGPTQQSNRSVGAQGAPGTQTPDVVQLIGPVI
Ga0137398_102980091	3300012683	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLCALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVVRLMGP
Ga0137359_117951822	3300012923	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSAGPTQQSNRSVGAQDAPGTQ
Ga0137404_103587312	3300012929	Vadose Zone Soil	MKKKSTSQSAFFNIRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQ
Ga0137407_106289401	3300012930	Vadose Zone Soil	MKKKSTSQSAFFNIRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVVQLI
Ga0137407_123361491	3300012930	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPNVVR
Ga0137410_115459112	3300012944	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSSRSTQQSNRSVGAQDAPGTQTSDVVRLTGPVVQNNDLRSLPYVAP
Ga0164298_102148521	3300012955	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGGLAVAMFAQTKSTRPTQQSAPSVGAQDAPGTQTPDVVRLMGPVLQNND
Ga0164302_104305952	3300012961	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSTRPTQQSDPSVGAQDAPGTQTPDVVRLMGPVIQNNDLRSLPY
Ga0134087_105428442	3300012977	Grasslands Soil	MKKKSTSQSAFFNLRVLIGAVFCLGALAVALFAQTKSARSTQQSNRSAGAQDAPGTQRPDVVLLMGPVI
Ga0164307_109683301	3300012987	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTRNTRPTQQSDSSVGTQDAPGTQTPDVVRLMGPV
Ga0163162_129535732	3300013306	Switchgrass Rhizosphere	MKKNSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSANPTQQSNRSVGAQDAPRTQTPDVLPLMG
Ga0157372_130986881	3300013307	Corn Rhizosphere	MKKNSTSQSAFFNLRVLIAAVFCFGALAVALFAQTKSARPSQQSDRSVGAQDAPGTQTPDIVQLMGP
Ga0120188_10388031	3300013760	Terrestrial	MKKKSTSQSAFFNLRVLFAAVFCLGALAVALFAQTKGSKQSSRSATRQDAPGTQRPDVMQMVGPVRTTAALKDL
Ga0134078_104987641	3300014157	Grasslands Soil	MKKKSTSQSAFFNLRGLIATVFCLGALPVALFAQTKSAKPTQQRNHSGGAQDSPGTQTPDVVRLVGP
Ga0134079_105049832	3300014166	Grasslands Soil	MKRKSTSQSAFFNLRVLIGAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVVRLMG
Ga0134112_102745992	3300017656	Grasslands Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVVQLVGPLIQNNDLRSLPYVAPN
Ga0184638_13181362	3300018052	Groundwater Sediment	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSAGPTQQSNRSVGAQDAPGTQTPDVVRLMGPVIQNNDLR
Ga0184609_103126512	3300018076	Groundwater Sediment	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSAGPTQQSNRSVGAQDAPGTQTPDVVQLIGPVILNKDLR
Ga0066655_100982692	3300018431	Grasslands Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVVRLMGPVIQNNDLR
Ga0173482_103661342	3300019361	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSDRSVGAQDAPRTQTPDVLRLM
Ga0193705_10095701	3300019869	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTESARPTQQSNRSVGAEDAPGTQTPDVVQLMGPVIQNNDLRSL
Ga0193707_10898561	3300019881	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSANPTQQSNRSVGAQDAPGTQTPDVVRLMGPVIQNNDL
Ga0193713_12044412	3300019882	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSAGPTQQSNRSVGAQDAPGMQTPDVVQLIG
Ga0193725_10961412	3300019883	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVVRLMGPVIQNNDLRSLPYV
Ga0193693_10588121	3300019996	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVVR
Ga0193718_11226981	3300019999	Soil	VKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSTRPTQQSDPSVGAQDAPGTQTPDVLQLMG
Ga0193757_10017662	3300020008	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSAKPTQQSDPSVGAQDAPGTQTPDVVRLMGPVI
Ga0193709_10012251	3300021411	Soil	VKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSTRPTQQSDPSVGAQDAPGTQTPDVVRLMGPVI
Ga0222623_102712531	3300022694	Groundwater Sediment	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPD
Ga0222622_105811921	3300022756	Groundwater Sediment	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSANPTQQSNRSVGAQDAPGTQTPDVVRLM
Ga0247692_10179881	3300024279	Soil	MKKKSTSQSAFFNIRVLIAAVFCLGALAVALFAQTNSAGPAQQSNRSVGVQDAPGTR
Ga0207697_101555502	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MKKKSTSQSAFFNVRVLIAAVFCLGALAVALFAQTKSAGPTQQSNRSVGAQDAPRTQTPDVLPLMGPVI
Ga0207663_110362211	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSAGPTQQGNRSVGAQDAPGTQTPDVAQLIGPVILNKDLRDL
Ga0207665_113632971	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQSNRSVGAQDAPGTQTPDVARLTGPVIQNNDLRALPYVAPNPEIEEKR
Ga0209438_11600311	3300026285	Grasslands Soil	MKKKSTSQSAFFNLRVLIAAVFCLCALAVALFAQTKSAGPTQQSNRSVGAQDAPGTQTP
Ga0209027_13194981	3300026300	Grasslands Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARSTQQSNRSVGAQDAPGTQTPDLVQLIGPVILNKDLRDLP
Ga0209688_10669611	3300026305	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSAKPTQQRNHSGGAQDSPGTQTPDVVRLVGPVIENNDLRSLPYVAPNA
Ga0209472_11996962	3300026323	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDLVQLIGPVILNKDLRDLPYI
Ga0179587_100895531	3300026557	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLCALAVALFAQTKSARPIQQSNRFVGAEDAPGTQTPDVVRLMGPVIQNNDLRSLPYVAPN
Ga0179587_101465101	3300026557	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAEDAPGTQTPDVVQ
Ga0179587_106232772	3300026557	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIAAVFCLCALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVVRLMGPVIQNNDLRS
Ga0207560_1042121	3300027400	Soil	MKKKSTSQSAFFNLRILIAAVFCLGALAVALFAQTKSAEPTQQSNRSVGAQDAPSTQTPDVL
Ga0209488_105902972	3300027903	Vadose Zone Soil	MKKKSTSQSAFFNLRVLIGAVFCLGALAVALFAQTKSARSTQQSNRSVGAQDAPGTQTPD
Ga0268264_121276592	3300028381	Switchgrass Rhizosphere	MKKKSTSQSAFFNLRVLIAAVCCLGALAVALFAQTKSANPTQQSNRSVGAQDAPGTQTPDVVRLMGPVIQNNDLRSL
Ga0247818_113971601	3300028589	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSDRSVGAQDAPGSQTPDIVQLMG
Ga0307313_102275191	3300028715	Soil	MKKKSTSKSAFFNLRVLIAAVVCLGALAVALFGAGAFAQPKAAQQSSRSKGAQDAPGTQT
Ga0307280_102205971	3300028768	Soil	MKKKSTSQSAFFNLRVLIAAVCCLGALAVALFAQTKSANPTQESNRSVGAQDAPGTQTPDVVRL
Ga0307320_104001651	3300028771	Soil	MKKKSTSQSAFSNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQ
Ga0307283_100651012	3300028790	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSTGPTQQSNRSVGVQDAPGTQTPDVVQ
Ga0307302_100636031	3300028814	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSAGPTQQSNRSVGAQDAPGTQTPDVVRLMGPVIQNTDLRSLPYVA
Ga0307302_102527791	3300028814	Soil	MKKKSTSQSAFFNVRVLIAAVFCLGALAVALFAQTKSAGPTQQSNRSVGAQDAPRTQTPDVVRLMGPVIQ
Ga0307296_107379752	3300028819	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSAGPTQQSNRSVGAQDAPGTQTPDVVQLIGPVIL
Ga0307310_105159582	3300028824	Soil	MKKKSTSQSAFFNLRILIAAVFCLGALAVALFAQTKSAGPTQQGNRSAGAQDAPGTQTPDVVQLMGPVIQNNDLRSLPYVAPNTEI
Ga0307308_103789881	3300028884	Soil	MKKKSTSQSAFFNLRVLIAAVFCLSALAVALFAQTNSAGPTQQSNRSVGAQDAPGTQT
Ga0307304_103657142	3300028885	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAEDAPGTQTPDVVQLIGPVL
Ga0170824_1070578712	3300031231	Forest Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSAKPAQQRNQSGGAQDAPGTQT
Ga0170820_109149741	3300031446	Forest Soil	MKTNPTSQSAFFNLRVLIAAVFCLSALGVALFAQTKSSRPTQQSNRSVGAQDAPGTQTPNVVRLMGPVVQNNDLRSLP
Ga0170819_101947041	3300031469	Forest Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVVRLMATVIQNNDLRS
Ga0310887_106591381	3300031547	Soil	MKKKSTSQSAFFNLRVLIAAVFCLGALVVALFAETNNARPSQQNNPSVDAQDAPGTQTPDVVRLMGPV
Ga0310813_123451811	3300031716	Soil	MKKKSTSESAFFNLRVLIAAVFCLAALTVALFAQTKSAGPTQQGNRSLGAQDAPGTQAPDVAQLIGPVSLNMDLRDLP
Ga0307472_1014866481	3300032205	Hardwood Forest Soil	MKKKSTSQSAFFNLRVLIAAVLCLGALAVALFAQSNRSVGAQDAPGTQTPDVVQLTGPVIQNNDL
Ga0310810_114083621	3300033412	Soil	MKKKSTSQSAFFNVRVLIAAVFCLGALAVALFAQTKSARPTQQSNRSVGAQDAPGTQTPDVVRLTGPVIQNNDLRSLPY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092492

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences