Metagenome Family F092488

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092488
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	82 residues
Representative Sequence	MKRLALAALAALLLTTAPLAQDKSAGADEIQIKQLERAWNQAEARQEVKEVSSLLADTLVYTDYDGSFMNKSEYMKW
Number of Associated Samples	91
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.23 %
% of genes near scaffold ends (potentially truncated)	91.59 %
% of genes from short scaffolds (< 2000 bps)	91.59 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.486 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.299 % of family members)
Environment Ontology (ENVO)	Unclassified (33.645 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.421 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 50.48% β-sheet: 3.81% Coil/Unstructured: 45.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF04055	Radical_SAM	12.15
PF00383	dCMP_cyt_deam_1	5.61
PF06831	H2TH	5.61
PF06827	zf-FPG_IleRS	3.74
PF04264	YceI	2.80
PF01872	RibD_C	2.80
PF00441	Acyl-CoA_dh_1	2.80
PF01058	Oxidored_q6	1.87
PF14534	DUF4440	1.87
PF13620	CarboxypepD_reg	1.87
PF08494	DEAD_assoc	1.87
PF00912	Transgly	0.93
PF06224	HTH_42	0.93
PF02771	Acyl-CoA_dh_N	0.93
PF02371	Transposase_20	0.93
PF13360	PQQ_2	0.93
PF00005	ABC_tran	0.93
PF01850	PIN	0.93
PF13304	AAA_21	0.93
PF04366	Ysc84	0.93
PF04237	YjbR	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	5.61
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	3.74
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	2.80
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	2.80
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	2.80
COG1740	Ni,Fe-hydrogenase I small subunit	Energy production and conversion [C]	1.87
COG1941	Coenzyme F420-reducing hydrogenase, gamma subunit	Energy production and conversion [C]	1.87
COG1201	Lhr-like helicase	Replication, recombination and repair [L]	1.87
COG0377	NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase	Energy production and conversion [C]	1.87
COG3260	Ni,Fe-hydrogenase III small subunit	Energy production and conversion [C]	1.87
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	0.93
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.93
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.93
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.49 %
Unclassified	root	N/A	35.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.49 %
Unclassified	root	N/A	35.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.49 %
Unclassified	root	N/A	35.51 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	42.06 %
Unclassified	root	N/A	35.51 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.74 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.67 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.87 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.67 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.93 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.93 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.67 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.93 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	0.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.67 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.93 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.93 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.67 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.93 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.93 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12455572	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1004	Open in IMG/M
3300001593\|JGI12635J15846_10004442	All Organisms → cellular organisms → Bacteria	12108	Open in IMG/M
3300002245\|JGIcombinedJ26739_100937432	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300004082\|Ga0062384_100118489	Not Available	1449	Open in IMG/M
3300004633\|Ga0066395_10259407	Not Available	935	Open in IMG/M
3300005175\|Ga0066673_10684230	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300005330\|Ga0070690_101421861	All Organisms → cellular organisms → Bacteria → Acidobacteria	558	Open in IMG/M
3300005332\|Ga0066388_105685210	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300005434\|Ga0070709_11508528	Not Available	546	Open in IMG/M
3300005435\|Ga0070714_100674405	All Organisms → cellular organisms → Bacteria → Acidobacteria	996	Open in IMG/M
3300005454\|Ga0066687_10949444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	513	Open in IMG/M
3300005533\|Ga0070734_10056398	All Organisms → cellular organisms → Bacteria	2365	Open in IMG/M
3300005538\|Ga0070731_10301191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1064	Open in IMG/M
3300005541\|Ga0070733_10650800	All Organisms → cellular organisms → Bacteria → Acidobacteria	707	Open in IMG/M
3300005542\|Ga0070732_10677565	All Organisms → cellular organisms → Bacteria → Proteobacteria	627	Open in IMG/M
3300005555\|Ga0066692_10971454	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300005557\|Ga0066704_10224842	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300005602\|Ga0070762_10348469	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300005602\|Ga0070762_11172803	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300005610\|Ga0070763_10751598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	574	Open in IMG/M
3300005921\|Ga0070766_10107378	All Organisms → cellular organisms → Bacteria	1662	Open in IMG/M
3300006059\|Ga0075017_100950870	Not Available	668	Open in IMG/M
3300006175\|Ga0070712_100460757	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300006176\|Ga0070765_100297838	Not Available	1490	Open in IMG/M
3300006176\|Ga0070765_100303963	Not Available	1475	Open in IMG/M
3300006354\|Ga0075021_10481301	Not Available	785	Open in IMG/M
3300006358\|Ga0068871_101765733	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300009148\|Ga0105243_12757760	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300009522\|Ga0116218_1343710	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300010043\|Ga0126380_12015767	Not Available	528	Open in IMG/M
3300010043\|Ga0126380_12063863	Not Available	523	Open in IMG/M
3300010046\|Ga0126384_10319890	All Organisms → cellular organisms → Bacteria → Acidobacteria	1283	Open in IMG/M
3300010048\|Ga0126373_11670972	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	701	Open in IMG/M
3300010320\|Ga0134109_10244123	All Organisms → cellular organisms → Bacteria → Acidobacteria	675	Open in IMG/M
3300010360\|Ga0126372_12126900	Not Available	609	Open in IMG/M
3300010376\|Ga0126381_101099949	All Organisms → cellular organisms → Bacteria → Acidobacteria	1148	Open in IMG/M
3300010376\|Ga0126381_101131229	All Organisms → cellular organisms → Bacteria → Acidobacteria	1131	Open in IMG/M
3300010379\|Ga0136449_103113305	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300012202\|Ga0137363_11131268	All Organisms → cellular organisms → Bacteria → Acidobacteria	666	Open in IMG/M
3300012363\|Ga0137390_11053312	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	764	Open in IMG/M
3300012923\|Ga0137359_10590174	Not Available	975	Open in IMG/M
3300012925\|Ga0137419_10973084	All Organisms → cellular organisms → Bacteria → Acidobacteria	702	Open in IMG/M
3300012929\|Ga0137404_12104131	Not Available	527	Open in IMG/M
3300012971\|Ga0126369_11689098	All Organisms → cellular organisms → Bacteria → Acidobacteria	722	Open in IMG/M
3300013296\|Ga0157374_12402659	Not Available	554	Open in IMG/M
3300014166\|Ga0134079_10291580	All Organisms → cellular organisms → Bacteria → Acidobacteria	721	Open in IMG/M
3300014325\|Ga0163163_12055562	All Organisms → cellular organisms → Bacteria → Acidobacteria	631	Open in IMG/M
3300016404\|Ga0182037_10969403	All Organisms → cellular organisms → Bacteria → Acidobacteria	740	Open in IMG/M
3300016404\|Ga0182037_11293046	All Organisms → cellular organisms → Bacteria → Acidobacteria	643	Open in IMG/M
3300020004\|Ga0193755_1014701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2577	Open in IMG/M
3300020199\|Ga0179592_10023313	All Organisms → cellular organisms → Bacteria	2765	Open in IMG/M
3300020580\|Ga0210403_10385907	All Organisms → cellular organisms → Bacteria → Acidobacteria	1144	Open in IMG/M
3300020581\|Ga0210399_10253897	All Organisms → cellular organisms → Bacteria	1466	Open in IMG/M
3300020581\|Ga0210399_10505726	Not Available	1004	Open in IMG/M
3300020581\|Ga0210399_11416541	All Organisms → cellular organisms → Bacteria → Acidobacteria	542	Open in IMG/M
3300020583\|Ga0210401_10182190	Not Available	1956	Open in IMG/M
3300021088\|Ga0210404_10224470	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1015	Open in IMG/M
3300021088\|Ga0210404_10581711	Not Available	636	Open in IMG/M
3300021171\|Ga0210405_10728788	Not Available	764	Open in IMG/M
3300021178\|Ga0210408_10730809	All Organisms → cellular organisms → Bacteria → Acidobacteria	778	Open in IMG/M
3300021180\|Ga0210396_11233512	All Organisms → cellular organisms → Bacteria → Acidobacteria	625	Open in IMG/M
3300021180\|Ga0210396_11242886	Not Available	622	Open in IMG/M
3300021402\|Ga0210385_10442149	All Organisms → cellular organisms → Bacteria → Acidobacteria	981	Open in IMG/M
3300021403\|Ga0210397_10197517	All Organisms → cellular organisms → Bacteria → Acidobacteria	1436	Open in IMG/M
3300021403\|Ga0210397_10447370	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300021404\|Ga0210389_10485756	All Organisms → cellular organisms → Bacteria → Acidobacteria	972	Open in IMG/M
3300021405\|Ga0210387_11323793	Not Available	622	Open in IMG/M
3300021406\|Ga0210386_11158082	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300021432\|Ga0210384_10000201	All Organisms → cellular organisms → Bacteria → Acidobacteria	91935	Open in IMG/M
3300021432\|Ga0210384_11642528	Not Available	548	Open in IMG/M
3300021432\|Ga0210384_11655336	Not Available	545	Open in IMG/M
3300021433\|Ga0210391_11259542	Not Available	571	Open in IMG/M
3300021475\|Ga0210392_10298364	All Organisms → cellular organisms → Bacteria → Acidobacteria	1154	Open in IMG/M
3300021478\|Ga0210402_10487891	All Organisms → cellular organisms → Bacteria → Acidobacteria	1144	Open in IMG/M
3300021479\|Ga0210410_11083652	Not Available	691	Open in IMG/M
3300021559\|Ga0210409_11258358	Not Available	616	Open in IMG/M
3300025906\|Ga0207699_10771602	Not Available	706	Open in IMG/M
3300025906\|Ga0207699_11164294	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300025915\|Ga0207693_10488764	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300025916\|Ga0207663_10024967	All Organisms → cellular organisms → Bacteria → Acidobacteria	3448	Open in IMG/M
3300026507\|Ga0257165_1051260	All Organisms → cellular organisms → Bacteria → Acidobacteria	742	Open in IMG/M
3300026555\|Ga0179593_1171263	All Organisms → cellular organisms → Bacteria	2001	Open in IMG/M
3300027173\|Ga0208097_1039476	Not Available	548	Open in IMG/M
3300027334\|Ga0209529_1063348	Not Available	629	Open in IMG/M
3300027370\|Ga0209010_1000697	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9745	Open in IMG/M
3300027676\|Ga0209333_1117929	Not Available	719	Open in IMG/M
3300027826\|Ga0209060_10066112	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1719	Open in IMG/M
3300027842\|Ga0209580_10466837	Not Available	629	Open in IMG/M
3300027884\|Ga0209275_10220093	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1032	Open in IMG/M
3300027894\|Ga0209068_10364938	Not Available	819	Open in IMG/M
3300027908\|Ga0209006_10590701	All Organisms → cellular organisms → Bacteria → Acidobacteria	918	Open in IMG/M
3300028013\|Ga0265350_109707	Not Available	503	Open in IMG/M
3300028906\|Ga0308309_10872810	All Organisms → cellular organisms → Bacteria → Acidobacteria	781	Open in IMG/M
3300031231\|Ga0170824_120230692	All Organisms → cellular organisms → Bacteria → Acidobacteria	626	Open in IMG/M
3300031231\|Ga0170824_123016285	All Organisms → cellular organisms → Bacteria → Acidobacteria	1206	Open in IMG/M
3300031446\|Ga0170820_14310293	Not Available	634	Open in IMG/M
3300031469\|Ga0170819_10646135	Not Available	513	Open in IMG/M
3300031715\|Ga0307476_11192508	Not Available	557	Open in IMG/M
3300031754\|Ga0307475_10983841	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300031823\|Ga0307478_11258722	Not Available	616	Open in IMG/M
3300031823\|Ga0307478_11783603	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300032205\|Ga0307472_100479723	All Organisms → cellular organisms → Bacteria → Acidobacteria	1066	Open in IMG/M
3300032205\|Ga0307472_100568265	Not Available	994	Open in IMG/M
3300032770\|Ga0335085_11473489	All Organisms → cellular organisms → Bacteria → Acidobacteria	710	Open in IMG/M
3300032893\|Ga0335069_12456568	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300033004\|Ga0335084_11202380	Not Available	757	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.26%
Host-Associated	Host-Associated	3.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.52%
Aquatic	Environmental → Aquatic	3.74%
Plants	Host-Associated → Plants	3.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.52%
Sediment	Environmental → Aquatic → Sediment	2.80%
Roots	Host-Associated → Plants → Roots	1.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.87%
Freshwater	Environmental → Aquatic → Freshwater	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.42%
Loam	Environmental → Terrestrial → Soil → Loam	24.30%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.80%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.87%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.51%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.80%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.30%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.54%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.61%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.74%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.87%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.87%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028013	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_124555722	3300000789	Soil	MKHLAIATVAAVLLSSAPFPQGKSAGEDEIRIKQLEHAWNQAEAKQEVKEVSSLLADTLAYTDYDGSFMNRAEYLKWVAAPQQKADHLYDEGLNVQVYGDAAVAT
JGI12635J15846_100044429	3300001593	Forest Soil	MNRLLFLTLALLLCSSSPLAQEKPVGSDEIQIRQLERAWNQAEANQQVNEVSNRVDDTLVYTDYYGSIMNKSEYMKWVGAPDQKPTTSSTKA*
JGIcombinedJ26739_1009374321	3300002245	Forest Soil	MKRLALAILAAILFSGAPFAQDKSAGSDEIRIKQLERAWNQAEAKQEVKEVSSLLADTLVYTDYDG
Ga0062384_1001184892	3300004082	Bog Forest Soil	MKRLALATLAAVLFSSAQFAQEKTVSIDEIRIKQLERAWNQAEAKQEVKEVSSLLADTLVYTDYDGS
Ga0066395_102594072	3300004633	Tropical Forest Soil	MKRIAMATILTFAFCAAPFAQDKSEGPDEIQIRQLERAWNQAEAKQEVTEISNLVADSLVYTDYDGTFMNK
Ga0066673_106842302	3300005175	Soil	MKFFALTAILALALYPAPAAQDKAGSADEIQVRQLERAWNQSEMKQEVGAVDNLVADSLVYTDYDGSFMNKKEYL
Ga0070690_1014218611	3300005330	Switchgrass Rhizosphere	MNRFALATLAALLLCTSPFAQDKAANADEIQIRQLERAWNQAEAHQEVNEVSALLADSLVYTDYDGSFMNKPEYMKWVA
Ga0066388_1056852101	3300005332	Tropical Forest Soil	MKRSILLTLGLFLCTSPPFAQEKPANSDEIQIRQLERAWNQAEAKQEVKEVANLVDDTLVYTDYDGTLMNKTEYLKWVAAPQQQADHLYDEGLTVHV
Ga0070709_115085281	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKRLPFATLVALFLCAVQFAQDKSVNADEIQIKQLERAWNQAEARQEVKEVSSLLADSLVYTDYDGSFMNKSE
Ga0070714_1006744052	3300005435	Agricultural Soil	MKRFLLLTIALLLSSSSPFAQEKAASADEIQIRQLERAWNQAEANQEVKEVSNLVDDTLAYTDYDGSFMNKTEYLKWVAAPEQKADHLYDEGLTVHVY
Ga0066687_109494441	3300005454	Soil	MKRFALAALAMLILGTSPFAQDKTANADEIQIRLLERAWNQAEAHQEVKEVSALLADSLVYTDYDGSFMNKSEYMKWVAAPEQKADHMYDEG
Ga0070734_100563983	3300005533	Surface Soil	MKTLLLAMIAGLLCSTALIAQEKSASAEEIQIRQLERAWNQSEAKQEVKEVANLVDDTLVYTDYDGSIMN
Ga0070731_103011911	3300005538	Surface Soil	MKRLALATLAALLFTTTPFAQDKSANSDEIQIRQLERAWNQAEAKQEVKEVSSLVADSLVYTDYDGTLMNKSEYMK
Ga0070733_106508002	3300005541	Surface Soil	MNRLLLAALVALLFPGAPVPQEKSTAGDEIQIRQLERAWNQAEANQQVNEVANLVADTLAYTDYDGSFLK
Ga0070732_106775651	3300005542	Surface Soil	MKRLALATLAALLFTTTPFAQDKSANSDEIQIRQLERAWNQAEAKQEVKEVSSLVADSLVYTDYDGTLMNKSEYMKWVAA
Ga0066692_109714541	3300005555	Soil	MKFFALTAILALALYPAPAAQDKAGSADEIQVRQLERAWNQAEMKQEVGAVDNLVADSLVYTDYDGSFMNKKEYLKWIVDPEQKADHIYDEG
Ga0066704_102248421	3300005557	Soil	MKFFALTAILALALYAAPAAQDRAGSADEIQVRQLERAWNQAEMKQEVGAVDNLVADSLVYTDYDGSFMNKKEYLKWIVD
Ga0070762_103484693	3300005602	Soil	MKFFGLVALSALLLSSFPAAQEKSGSADEIQVRQLERAWNQAEAKQEVKEVSALLADSLVYTDYDGSFMNKSEYMKWVAAPEQKADH
Ga0070762_111728032	3300005602	Soil	MKRLALATLAALLFSSAPFAQEKTVSVDEIRIKQLERAWSQAEAKQEVKEVSSLLADTLVYTDYDGSFMNKSEYMK*
Ga0070763_107515981	3300005610	Soil	MNRLVLLTIALILSTSSFAQEKPATSDEIQIRQLERAWNQAEANQQVKEVSNLVDDTLVYTDYDGSIMNKAEYMKWVAAPDQKADHLFDEGMTVHVY
Ga0070766_101073781	3300005921	Soil	MKFVGLVALSALLLSSFPAAQEKSTSADEIQIRQLERAWNQAEAKQEVKEVSALLADSLVYTDYDGSFMNKSEYM
Ga0075017_1009508702	3300006059	Watersheds	MKRLALATLAAVIFSNAPLAQEKTVSVDEIRIKQLERAWNQAEAKQEVKEVSSLLADTLVYTDYDGSFM
Ga0070712_1004607572	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNRFALATLAALLLCTSPFAQDKAANADEIQIRQLERAWNQAEAHQEVNEVSALLADSLVYTDYDGSFM
Ga0070765_1002978381	3300006176	Soil	MKRLALAMLAAVLFSTAPFAQEKAVSVDEIRIKQLERAWNQAEAKQEVKEVSSLLADTLVYTDY
Ga0070765_1003039632	3300006176	Soil	MKRLALATFAVVLFSSAPFAQEKTVSVDEIRIKQLERAWNQAEAKQEVKEVSSLLADTLVYTDYDGSFMNKSEYMKWV
Ga0075021_104813012	3300006354	Watersheds	MKRLALAALAALLLTTAPLAQDKSAGADEIQIKQLERAWNQAEARQEVKEVSSLLADTLVYTDYDGSFMNKSEYMKW
Ga0068871_1017657332	3300006358	Miscanthus Rhizosphere	MNRFALATLAALLLCTSPFAQDKAANADEIQIRQLERAWNQAEAHQEVNEVSALLADSLVYTDYDGSFMN
Ga0105243_127577603	3300009148	Miscanthus Rhizosphere	LLCTSPFAQDKAANADEIQIRQLERAWNQAEAHQEVNEVSALLADSLVYTDYDGSFMNKPEYMKWVAAPE*
Ga0116218_13437102	3300009522	Peatlands Soil	MKHLVLATLAAMLFVSAPFPQDKSTAADEIQIKQLERAWNQAEAKQEVKEVSSLLADSLVYTDYDGSFMNKSEYMKWVVSPG
Ga0126380_120157672	3300010043	Tropical Forest Soil	MNRLVLLTIALLFSSSSFAQETPTNADEIQIRQLERAWNQAEAAQQVKEVSNLVDDTLVYTDYDGSLMN
Ga0126380_120638631	3300010043	Tropical Forest Soil	MKRIATALLVTLVFCAAPFAQDKSEGPDEIQIRQLERAWNQAEAKQEVTEISNLVADSLVYTDYDGTFMNKAEYLKWV
Ga0126384_103198901	3300010046	Tropical Forest Soil	MKRLLLLTLALLLSSSSFAQETPANADEIQIRQLERAWNQAEAAQQVKEVSNLVDDTLVYTDYDGSLM
Ga0126373_116709721	3300010048	Tropical Forest Soil	MKSFTLLTLGALLFCPARIPQENSAGADEIQIKQLERAWNQAEAKQEVKEVSSLLADSLVYTDYDGS
Ga0134109_102441231	3300010320	Grasslands Soil	MKFFALTAILALALYPAPAAQDKAGSADEIQVRQLERAWNQAEMKQEVGAVDNLVADSLVYTDYDGSFMNKKEYLKWIVDPDQKADHIYDE
Ga0126372_121269002	3300010360	Tropical Forest Soil	MRFFALSVVLAFALYPAPASQEKAVSADEIQIRQLERAWNQAEMKQEVGAVDNLVADTLVYTDYDGTFMNKKEYMKWIVNPEQKADHLYDEGLSVQIYGNAAVATGIYRESGT
Ga0126381_1010999492	3300010376	Tropical Forest Soil	MKPLFLPAIALLLSSPSPFAQEKPTSSDEIQIHQLERAWNQAEAKQEVKEVANLVDDTLVYTDYDGSIMNKAEYLKWVAAPEQ
Ga0126381_1011312292	3300010376	Tropical Forest Soil	MKPLFLLAIALLLCSPSPFAQEKPTSSDEIQIHQLERAWNQAEAKQEVKEVANLVDDTLVYTDYDGSIMNKAEYLKWVAAPEQ
Ga0136449_1031133052	3300010379	Peatlands Soil	MKRFALATLAAVLFSSAPFPQDKSTAADEIQIKQLERAWNQAEAKQEVKEVSSLLADTLVYTDYDASFMNKSEYLKWVVAPQQKADHLYDE
Ga0137383_106042892	3300012199	Vadose Zone Soil	MKFFALTAILALALYPAPAAQDKAGSADEIQVRQLARAWNQAEMKQEIGAVDNLVSDSLVYTDYDGTFMHKK
Ga0137363_111312682	3300012202	Vadose Zone Soil	MKFFALTAILALALYPAPAAQDKAGSADEIQVRQLERAWNQAEMKQEIGAVDNLVADSLVYTDYDGTFMHKKEYMKWVIDPDQKADH
Ga0137390_110533121	3300012363	Vadose Zone Soil	MKYLMLLTLAAGLLLPAARFPQGNAVNADEIQIRQLEHAWNQAEAKQEVKEVSSLLAETLVYTDYDGSFMNKSEYM
Ga0137359_105901743	3300012923	Vadose Zone Soil	MKILALAILAALLFSTAPLAQDKSASADEIQIKQLERAWNQAESKQEVQEVSSLLADSLVYT
Ga0137419_109730842	3300012925	Vadose Zone Soil	MKRLALAILIASMFSAAPFAQDKSGSADEIQIKQLERAWNQAEAKQEVGALSSLLADSLAYTDYDGSF
Ga0137404_121041311	3300012929	Vadose Zone Soil	MKRLALLTIALLLCSSSPFAQEQPGVADEIQIRQLERAWNQAEANQEVKEVSNLVDDTLVYTDYDGSIMDKAEYMKWVAAPQQK
Ga0126369_116890981	3300012971	Tropical Forest Soil	MKRIAIALLVTLAFCAAPFAQDKSEGPDEIQIRQLERAWNQAEAKQEVTEISNLVADSLVYTDYDGTFMNKAE
Ga0157374_124026591	3300013296	Miscanthus Rhizosphere	MNRFALATLAALLLCTSPFAQDKAANADEIQIRQLERAWNQAEAHQEVNEVSALLADSLVYTDYDGSFMNKPEYMKWVAAPEQKADHLYDE
Ga0134079_102915802	3300014166	Grasslands Soil	MKFFALTAILALALYPAPAAQDKAGSADEIQVRQLERAWNQSEMKQEVGAVDNLVADSLVYTDYDGSFMNKKEYLKWIVDP
Ga0163163_120555622	3300014325	Switchgrass Rhizosphere	MNRFALATLAALLLCTSPFAQDKAANADEIQIRQLERAWNQAEAHQEVNEVSALLADSLVYTDYDGSFMNKPEYMKWVAAPEQKADHL
Ga0182037_109694031	3300016404	Soil	MKPLFLLAIALLLCSPSPFAQETPTSSDEIQIHQLERAWNQAEAKQEVKEVANLVDDTLVYTDYDGSIMNKAEYLKWVAAPEQKADHLYDEGL
Ga0182037_112930461	3300016404	Soil	MKRIAIALLVTFAFCAAPFAQDKSDGPDEIQIRQLERAWNQAEARQEVTEISNLVADSLVYTDYDGSF
Ga0193755_10147011	3300020004	Soil	MKHLAIATVAAVLLSSAPFPQGKSAGEDEIRIKQLEHAWNQAEAKQEVKEVSSLLADTLAYTDYDGS
Ga0179592_100233131	3300020199	Vadose Zone Soil	MKILALAILAALLLSTAPLAQDKSASADEIQIKQLERAWNQAESKQEVQEVSSLLADTLVYTDYDGSFMNKP
Ga0210403_103859071	3300020580	Soil	MKLFALTTFAAVLFSGAPFPQEKSASADEIQIKQLERAWNQAEAQQEVKEVSSLLADTLVYTDYDGSFMNKAEYLKRVA
Ga0210399_102538971	3300020581	Soil	MKRLVLATLAALLVTTAPVPQDKPASADEIQIKQLERAWNQAEAKQEVKEVASLLADTLVYTDYDGSFMNKS
Ga0210399_105057262	3300020581	Soil	MKILALATLVALLSTTAPLARDKSASADEIQIKQLERAWNQAESKQEVQEVSSLLADSLVYTDYD
Ga0210399_114165411	3300020581	Soil	MKFFAFATITAVLFSGAPFPQDKSASADEIQIKQLERAWNQAEAQQEVKEVSSLLADTLVYTDYDGSFMNKAEYLKWVAAPEQKADHLYDEG
Ga0210401_101821901	3300020583	Soil	MQFRQNIRTSVSKKAYAMKRLALATFAALLFSSAPFAQEKTVSVDEIRIKQLERAWSQAEAKQEVKEVSSLLADTLVYTDYDGSFMNKSEYMKWV
Ga0210404_102244701	3300021088	Soil	MRLAILSTLAGLLLSIASVPQGKSPTSDEIQIKQLERAWNQAEAKQEVKEVSAILADTFVYTDYDGSFMNKSEYLKWVTAPQQKLITSTTRASPFRSTATPP
Ga0210404_105817111	3300021088	Soil	MKLLALGTLAAFLFATAPLAQDKSASADEIQIRQLERAWNQAEAKQEVKEVASLLADTLVYTDYDGSFM
Ga0210405_107287882	3300021171	Soil	MRFFALATIVAVLFSGAPFPQDKSASADEIQIKQLERAWNQAEAQQEVKEVSSLLADTLV
Ga0210408_107308091	3300021178	Soil	MKLLPLATLVALFFSTTPSPQDKSPTSDEIQIKQLERAWNQAEAKQEVKEVSALLADTLVYTDYDGSFMNKSEYLKWVAAPQQKADHLYDEGITVQVY
Ga0210396_112335122	3300021180	Soil	MNRFLFLTLALLLCSSSPFAQEKPVASTNPDEIQIRQLERAWNQAEASQQVNEVSKLVDDTLVYTDYDGSIMNKSEYLKWVAAPDQKADHLFDEGMTVHVYAN
Ga0210396_112428861	3300021180	Soil	MKLFALATLAAVLFSGAPFPQDKSASAEEIQIKQLDRAWNQAEAQQEVKEVSSLLADTLV
Ga0210385_104421492	3300021402	Soil	MNRMLLLTLALLVCSSSFAQDKPASSDEIQIRQLERAWNQAEANQQVKEVANLVDDTLVYVDYDGSIMNKGEYLKWVAAPDQKADHLFDDGMTAHVYANA
Ga0210397_101975171	3300021403	Soil	MNRFLFLTLALLLCSSSPFAQEKPVASTNPDEIQIRQLERAWNQAEASQQVNEVSKLVDDTLVYTDYDGSIMNKSEYMKWVAAPDQ
Ga0210397_104473702	3300021403	Soil	MKLLTIATLGAVLFSGASLPQNKSASADEIQIKQLERAWNQAEAQQEVKEVSSLLADTLVYTDYDGSFMNKAEYLK
Ga0210389_104857561	3300021404	Soil	MNRLVLLTLALLLCSSSPFAQEKPASPDEIQIRQLERAWNQAEANQQVSEVSKLVDDTLVYTDYTGSFMNKSEYLKWVAAPDQKADHLFDEGMTVHVYANAAVVNGIYRESGTNKGKKYVIRAR
Ga0210387_113237931	3300021405	Soil	MKHLTLAILAAMLFSGTPFAEDKSSGADEIRIKQLERAWNQAEAMQEVKEVSSLLADTLVYTDYDGS
Ga0210386_111580821	3300021406	Soil	MNRLVLLTIALILSTSSFAQEKPATSDEIQIRQLERAWNQAEANQQVKEVSNLVDDTLVYTDYDGSIMNKSEYMKWVAAPEQKADHLFDEGMTVHVYAN
Ga0210384_1000020186	3300021432	Soil	MKLLTIATLGAVLFSGASLPQNKSASADEIQIKQLERAWNQAEAQQEVKEVSSLLADTLVYTDYDGSFMNKAEYLKWVAAPEQKADHLYDEGLTV
Ga0210384_116425282	3300021432	Soil	MKHLVLATLAAVLLSTAPFPQDKSTAADEIQIKQLERAWNQAEAKQEVSEVSSLLADTLVYTDYDGSFMNKAEYL
Ga0210384_116553361	3300021432	Soil	MKHLVLATLAAVIFSSTPFPQDKSAAADEIQIKQLERAWNQAEAKQEVSEVSSLLADTLVYTDYDGSFMNKSEYMKWV
Ga0210391_112595422	3300021433	Soil	MKRLALATLIALLFSSAPFAQEKIVSVDEIRIKQLERAWNQAEAKQEVKEVSTLLADTLVYTDYDGSFMN
Ga0210392_102983641	3300021475	Soil	MNRLVLLTLALLLCSSSPFAQEKPASPDEIQIRQLERAWNQAEANQQVSEVSKLVDDTLVYTDYTGSFMNKSEYLKWVAAPDQKADHLFDEGMTVHVYANAAVVNGIYRESGTNKGK
Ga0210402_104878912	3300021478	Soil	MKRLALATLAVVLLSSASIPQDKSTNADEIQIKQLERAWNQAEAKQEVKEVSALLADTFVYTDYDGSFMNK
Ga0210410_110836522	3300021479	Soil	MKLLALGTLAALLFATAPLAQDKSASADEIQIRQLERAWNQAEAKQEVKEVASLLAETLV
Ga0210409_112583581	3300021559	Soil	MNRFALAALAALLFSAAPVPQDKSVSADEIQIKQLERAWNQAEAKQEVKEVSALLADTLAYTDYDGSFM
Ga0207699_107716022	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MKRLALATLAVVLFSSALVPQDRSAGADEIRIKQLERAWNQAEAKQEVKEVSSLLADTLVYTDYDGS
Ga0207699_111642942	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	AALLLCTSPFAQDKAANADEIQIRQLERAWNQAEAHQEVNEVSALLADSLVYTDYDGSFMNKPEYMKWVAAPEQKADHLYDEGLSTERIASGHSGSVVSRSG
Ga0207693_104887642	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MNRFALATLAALLLCTSPFAQDKAANADEIQIRQLERAWNQAEAHQEVNEVSALLADSLVYTDYDGSFMNKPE
Ga0207663_100249671	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFLLLTIALLLSSSSPFAQEKAASADEIQIRQLERAWNQAEANQEVKEVSNLVDDTLAYTDYDGSFMNKTEYLKWVAAPEQKADHL
Ga0257165_10512602	3300026507	Soil	MKRLALAILVASIFSAAPFAQDKPGSTDEIQIRQLERAWNQAEAKQEAGALTTLLADSLAYTDYDGSFMNKSEYMKWVVEPTQ
Ga0179593_11712631	3300026555	Vadose Zone Soil	MKFFALTAILALALYPAPAAQDKAGSADEIQVRQLERAWNQAEMKQEVGAVDNLVADSLVYTDYDGTFMNKKEYLKWIVDPIRRPTIFTTRA
Ga0208097_10394761	3300027173	Forest Soil	MKYLALATLAAVLFSSAPFSQDKSALADEIQIKQLERAWNQAEANQEVKEVSSLLADTLVYTDYDGSFMNKSEYLKWVVSPGQKADHIYDE
Ga0209529_10633481	3300027334	Forest Soil	MNRLLFLTLALLLCSSSPLAQEKPVGSDEIQIRQLERAWNQAEANQQVNEVSNRVDDTLDTDYYGSIMNKSEYMKWVGAPDQKADHLFDEGMTVHVYGNAAVVNGIYRESGTIKGKHYVIRSRYTTP
Ga0209010_10006975	3300027370	Forest Soil	MNRLLFLTLALLLCSSSPLAQEKPVGSDEIQIRQLERAWNQSEANQQVNEVSNRVDDTLVYTDYYGSIMNKSEYMKWVGAPDQKPTTSSTKA
Ga0209333_11179293	3300027676	Forest Soil	MNRLLFLTLALLLCSSSPLAQEKPVGSDEIQIRQLERAWNQAEANQQVNEVSNRVDDTLVYTDYYGSIMNKSEYMKWVGAPDQKPTTSSTKA
Ga0209060_100661121	3300027826	Surface Soil	MKTLLLAMIAGLLCSTALIAQEKSASAEEIQIRQLERAWNQSEAKQEVKEVANLVDDTLVYTDYDGSIMNKAEYMKWVAAPEQKADHLFDEGLTVHVYNNAAVV
Ga0209580_104668372	3300027842	Surface Soil	MKRLALATLAALLFTTTPFAQDKSANSDEIQIRQLERAWNQAEAKQEVKEVSSLVADSLVYTDYDGTLMNKSEYMKWVAAP
Ga0209275_102200932	3300027884	Soil	MKRLALATLAALLFSSAPFAQEKTVSVDEIRIKQLERAWSQAEAKQEVKEVSSLLADTLVYTDYDGSFMNKSEYMK
Ga0209068_103649382	3300027894	Watersheds	MKRLALAALAALLLTTAPLAQDKSAGADEIQIKQLERAWNQAEARQEVKEVSSLLADTLVYTDYDGSFMNKSEYMKWVVSPGQKADHIY
Ga0209006_105907011	3300027908	Forest Soil	MNRLVLLTIALILSTSSFAQEKPATSDEIQIRQLERAWNQAEANQQVKEVSNLVDDTLVYTDYDGSFMNKSEYMKW
Ga0265350_1097071	3300028013	Soil	MKRLALATLIALLFSSAPFAQEKTVSVDEIRIKQLERAWNQAEAKQEVKEVASLLADTLVYTDYDGSFMNKSQYMKWVAAPDQKADHLYDE
Ga0308309_108728101	3300028906	Soil	MNRFLFLTLALLLCSSSPFAQEKSSASTNPDEIQIRQLERAWNQAEANQQVKEVSNLVDDTLVYTDYDGSIMNKSEYMKWVAAPEQK
Ga0170824_1202306922	3300031231	Forest Soil	MNRLLLLTLALLACSSSFAQDKPANSDEIQIRQLERAWNQAEANQQVKEVSNLVDDTLVYVDYDGSIMNKAEY
Ga0170824_1230162852	3300031231	Forest Soil	MNRLLLLTLALFLCATSPLAQEKPATNPDEIQIRQLERAWNQAEASQQVNEVSKLVDDTLVYTDYTGSFMNKSEYLKWVAAPDQKADHLFDEGMTVHVYANAAVVNGIYRESGTNKGK
Ga0170820_143102931	3300031446	Forest Soil	MNRLLLLTLALFLCATSPLAQEKPATNPDEIQIRQLERAWNQAEASQQVNEVSKLVDDTLVYTDYTGSFMNKSEYLKWVAAPDQKADHLFDEGMTVHVYANAAVVNGIYRES
Ga0170819_106461351	3300031469	Forest Soil	MKRFLLLTIALLLSSSSPFAQEKAASADEIQIRQLERAWNQAEASQQVHEVSKLVDDTLVYTDYTGSFMNKSEYLKWVAAPDQKADHLFDEGMTVHVYANAA
Ga0307476_111925081	3300031715	Hardwood Forest Soil	MKFFGLVALSALFLSSFPAAQDKSASADEIQIRQLERAWNQAEAKQEVKEVSALLADSLVYTDYDGSFMNKSEYMKWVAAPE
Ga0307475_109838412	3300031754	Hardwood Forest Soil	MKYLALATLATMLFSSAPFPQAKSTVADEIQIKQLERAWNQAEANQEVKEVSSLLADTLVYTDYDGLFMNKSEYMKWIVSPGQKADHI
Ga0307478_112587221	3300031823	Hardwood Forest Soil	MKRLALATLIALLFSSAPFAQEKIVSVDEIRIKQLERAWNQAEAKQEVKEVASLLADTLVYT
Ga0307478_117836031	3300031823	Hardwood Forest Soil	MKIFALAILAALLLSTAPLAQDKSASADEIQIKQLERAWNQAESKQEVQEVSSLLADSLVYTDYDGSFMNKSEYLKWVAAP
Ga0307472_1004797231	3300032205	Hardwood Forest Soil	MKHFALVTMAVLLFSSAPLPQNRPTDPDEIQIKQLERAWNQAEAKQEVKEVSAILADTFVYTDYDGSFMTRAEYMKWIVAPAQKADHLYD
Ga0307472_1005682651	3300032205	Hardwood Forest Soil	MKLFALTAVLAFALYPAPAAQESSGSADEIQIKQLERAWNQAEMKQEVGAVDNLLADSLVYTDYDGSFMNKKEYMKWVVAPEQKADHLFDE
Ga0335085_114734892	3300032770	Soil	MKRMAMALLVTLAFCAAPFAQDKSEGPDEIQIRQLERAWNQAEAKQEVTEISNLVADSLAYTDYD
Ga0335069_124565682	3300032893	Soil	MKRLLFLTLTLLLSSSSPFAQERPSASINSDEIQIRQLERAWNQAEANQQVKEVANLVDDTLVYTDYDGSLMNKSDYLKWVAAPEQ
Ga0335084_112023801	3300033004	Soil	MKRMAMALLVTLAFCAAPFAQDKSEGPDEIQIRQLERAWNQAEAKQEVTEISNLVADSLA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092488

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences