NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F092479

Metagenome Family F092479

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092479
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 72 residues
Representative Sequence PTITANGGVGVHLEDGSFAGFLAANITGNLSGLDVDCEPQFPITRFVARTGGITNCVESASNSKLKAVE
Number of Associated Samples 95
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 4.67 %
% of genes from short scaffolds (< 2000 bps) 2.80 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (96.262 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(19.626 % of family members)
Environment Ontology (ENVO) Unclassified
(35.514 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(46.729 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 4.12%    β-sheet: 16.49%    Coil/Unstructured: 79.38%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF00912Transgly 7.48
PF02801Ketoacyl-synt_C 3.74
PF00117GATase 2.80
PF13229Beta_helix 2.80
PF03050DDE_Tnp_IS66 1.87
PF01545Cation_efflux 1.87
PF08501Shikimate_dh_N 0.93
PF01548DEDD_Tnp_IS110 0.93
PF02518HATPase_c 0.93
PF12681Glyoxalase_2 0.93
PF14534DUF4440 0.93
PF16976RcpC 0.93
PF01408GFO_IDH_MocA 0.93
PF16916ZT_dimer 0.93
PF00589Phage_integrase 0.93
PF01740STAS 0.93
PF13429TPR_15 0.93
PF13620CarboxypepD_reg 0.93
PF00440TetR_N 0.93
PF05598DUF772 0.93
PF00294PfkB 0.93
PF00072Response_reg 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG0744Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidaseCell wall/membrane/envelope biogenesis [M] 7.48
COG4953Membrane carboxypeptidase/penicillin-binding protein PbpCCell wall/membrane/envelope biogenesis [M] 7.48
COG5009Membrane carboxypeptidase/penicillin-binding proteinCell wall/membrane/envelope biogenesis [M] 7.48
COG0053Divalent metal cation (Fe/Co/Zn/Cd) efflux pumpInorganic ion transport and metabolism [P] 1.87
COG1230Co/Zn/Cd efflux system componentInorganic ion transport and metabolism [P] 1.87
COG3436TransposaseMobilome: prophages, transposons [X] 1.87
COG3965Predicted Co/Zn/Cd cation transporter, cation efflux familyInorganic ion transport and metabolism [P] 1.87
COG0169Shikimate 5-dehydrogenaseAmino acid transport and metabolism [E] 0.93
COG3547TransposaseMobilome: prophages, transposons [X] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A96.26 %
All OrganismsrootAll Organisms3.74 %

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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005553|Ga0066695_10656770All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium620Open in IMG/M
3300006175|Ga0070712_100852981All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium784Open in IMG/M
3300009098|Ga0105245_10070375All Organisms → cellular organisms → Bacteria3174Open in IMG/M
3300031754|Ga0307475_10064901All Organisms → cellular organisms → Bacteria2780Open in IMG/M
3300031754|Ga0307475_10893906Not Available702Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil19.63%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil13.08%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.54%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil4.67%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds3.74%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil3.74%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.74%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.80%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.80%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.80%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.80%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.87%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.87%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.87%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.87%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.87%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.93%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.93%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.93%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.93%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.93%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.93%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.93%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.93%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005184Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005993Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046EnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300010320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300021411Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2EnvironmentalOpen in IMG/M
3300024055Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026217Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes)EnvironmentalOpen in IMG/M
3300026294Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)EnvironmentalOpen in IMG/M
3300026325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)EnvironmentalOpen in IMG/M
3300026360Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-BEnvironmentalOpen in IMG/M
3300026496Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-AEnvironmentalOpen in IMG/M
3300026542Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)EnvironmentalOpen in IMG/M
3300027681Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300030114I_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ26739_10151091823300002245Forest SoilDSATVTGNGGDDVHLEGASFAGFQSATVTGNLSGLDVNCAPQFTITHFVARTGGITNCVAPASNSQLKDLK*
Ga0062386_10018431413300004152Bog Forest SoilPTITANGGVGVHLEDGSFAGFLAANITGNLSGLDVDCEPQFPITRFVARTGGITNCVESASNSKLKAVE*
Ga0063356_10104435913300004463Arabidopsis Thaliana RhizosphereMTLLGSSTAVFRGPTITGNAGNGVHLEDGSFAGFVAASITGNLSGTDVDCAPQFPITRFVERTGGITNCVEPVSNAKLKAVE*
Ga0062595_10000095213300004479SoilGNGGVGVHLEDGAFAGFLAANITGNLGGLDIECTPQFPITRFVDRTGGITNCVESASSSRQKAVQ*
Ga0066674_1042296713300005166SoilNSGDGMKLLAGAAAVFLFSTVTGNGGNGVYLNDGSLAAFLDTSITGNLSGLDVDCDPQFPITRGVETTGGITNCVEPAGNSKLKARE*
Ga0066690_1024139133300005177SoilTDNGGVGVQVMDSSFAGFLAASVTGNLSGLDIDCEPQFSTARFVDRTGGITNCVEPTSKSQLEDLQ*
Ga0066671_1084188723300005184SoilATSSDLLLHGGTISGSVGNGVTMLGGSKVVFRDSATVIDNGGDGVHLEDASFAGFQSATVTGNASGLDVNCAPQFSISHFVDRTGGITNCVEPSNPKPKNAE*
Ga0066676_1048812723300005186SoilGGSIVVFRDGATITGNGGNGVHLEDGSVAVFFGTNVTGNLSGTDVDCAPQFPITRFVETTGGITNCVEPASKSQLKDLK*
Ga0070682_10006869943300005337Corn RhizosphereGPTITGNGGNGVHLEDGSFAGFLAANITGNLSGTDVDCAPQFPITRFVARTGGVTNCVEPASSSKLRAAE*
Ga0070714_10036116923300005435Agricultural SoilGVGVQVMDSSFAGFLAASITGNLSGLDVDCEPQFPITRFIDRTGAITNCGEPAALHNEKP
Ga0070714_10189665413300005435Agricultural SoilGVGVQVMDSSFAGFLAASITGNLSGLDVDCEPQFPTARFVDRTGGITNCVEPTSKSPLKDFK*
Ga0070685_1042011013300005466Switchgrass RhizosphereRGPTITGNAGNGVHLEDGSFAGFVAASITGNLSGTDVDCAPQFPITRFVERTGGITNCVEPVSNAKLKAVE*
Ga0070684_10002753063300005535Corn RhizosphereTGNAGNGVHLEDGSFAGFVAASITGNLSGTDVDCAPQFPITRFVERTGGITNCVEPVSNAKLKAVE*
Ga0070731_1022665233300005538Surface SoilGPTITANGGVGVQVLDGSFAGFLAASITGNLSGLDVDCAPQFPVTRSVDRTGGTTNCVEPTSKSQLKDLK*
Ga0070704_10134320623300005549Corn, Switchgrass And Miscanthus RhizosphereSGGDGVILLGGATALFRGPTITGNGGNGVHLEDGSFAGFLAANITGNLSGTDVDCAPQFPITRFVARTGGVTNCVEPASSSKLRAAE*
Ga0066695_1065677023300005553SoilIFSGPTITANGGVGVQVMDGSFAAFLAASITGNLSGLDVDCEPQFPIARFVDRTGGITNCVEPTSKSPLKDLK*
Ga0066661_1074695413300005554SoilTVVFRDGATVTGNGGDGVHLEDASFAGFQSATVTGNSSGLDVNCAPQFTITHFVARTGGITNCVEPASPAQARDSMK*
Ga0066692_1064208413300005555SoilISGSIGNGMTMLAGSRAAFRDSTAVTGNGGDGVHLEDASFAGFQSATVTGNLSGLDVNCAPQFTITHFVARTGGITNCFEPANKLQLKDVE*
Ga0066700_1071459223300005559SoilLGANVAFQGPTITGNGGVGVHLEDGAFAGFLAANITGNLGGLDIECSPQFPITRFIERTGGITNCVEPAAPAQRESMK*
Ga0066700_1110866513300005559SoilGMTMLAGSRAAFRDSTAVTGNGGDGVHLEDASFAGFQSATVTGNLSGLDVNCAPQFTITRFVGRTGGITNCVEPANKSQLKDLE*
Ga0066699_1038331843300005561SoilHLEDGAFAGFLAASITGNLSGLDVDCEPQFPITRFIDRTGAITNCVEPASAAQRETLK*
Ga0066705_1037018523300005569SoilIHLEDGSFAVFFGTTVTGNSSGTDVECAPQFPITRFVAGTGGITNCVEPASKSQLKTAQ*
Ga0066705_1071736923300005569SoilASVAFFGPTITGNGGNGVHLEDGTFAGFVAANVTGNLSGLDVDCEPQFPITRFVDRTGGVTNCVESAANTASR*
Ga0068859_10037593513300005617Switchgrass RhizosphereTGNGGNGVHLEDGAFAGFVAANVTGNLSGTDVDCAPQFPITRFVDRTGGVTNCVESPANSQRKTLE*
Ga0068864_10257971613300005618Switchgrass RhizosphereGSTVVFRDAATITGNGGNGVHLEDASFAGFQSATVTGNLSGLDVDYAPQFTITHFVERTGGVTNCVESTGLAQPANVK*
Ga0080027_1016418623300005993Prmafrost SoilLEDASFAGFQSATVTGNLSGLDVDCAPQFTITHFVARTGGITNCIEPTSASKLKGLE*
Ga0075023_10021841823300006041WatershedsFGGPTITANGGVGVHLEDGSFAGFLAANITGNLGGLDIECAPQFPITRFVDRTGGITNCVEPTSNSKLKDVE*
Ga0075017_10121280523300006059WatershedsVHLEDGSFAGFLGASITGNLSGLDVDCEPQFPITRFVARTGGITNCVEPDSNSKLKAVQ*
Ga0070712_10085298133300006175Corn, Switchgrass And Miscanthus RhizosphereFAGFVAANVTGNLSGLDVDCEPQFPITRFVERTGGVTNCVESAVNSASRQTTK*
Ga0075021_1109648523300006354WatershedsEDGAFAGFLSANITGNLGGLDIDCEPQFPVTRFIDRTGGITNCVESASLAPRGTIQK*
Ga0079220_1028010923300006806Agricultural SoilGNGGVGVHLEDGAFAGFLAANITGNLGGLDIECTPQFPITRFIDRTGGITNCVESASAAQRETLK*
Ga0099795_1017545913300007788Vadose Zone SoilTVVFRDGATVIDNGGDGIHLEDASFAGFQSATVTGNLSGLDVNCAPQFTITHFVARTGGNTNCVEPASNSQLKVVE*
Ga0099830_1171076023300009088Vadose Zone SoilGNGGDGVHLEDASFAGFQSATVTGNLSGLDVNCAPQFTITHFVARTGGITNCFEPASKSQLKDLK*
Ga0105245_1007037513300009098Miscanthus RhizosphereAVFRGPTITGNAGNGVHLEDGSFAGFVAASITGNLSGTDVDCAPQFPITRFVERTGGITNCVEPVSNAKLKAVE*
Ga0066709_10072054613300009137Grasslands SoilTITGNGGVGIHLEDGAFAGFLAASITGNLSGLDVDCEPQFPITRFIDRTGAITNCVEPASAAQREP*
Ga0105241_1131289723300009174Corn RhizosphereFQGATITGNGGNGIHLEDASFAGFQSATVTGNLSGVDIDCAPQFTITRFVARTGGITNCVEPASSSKSKAAE*
Ga0134109_1038704413300010320Grasslands SoilPTITANGGVGVQVMDSSFAAFLAASVTGNLSGLDVDCEPQFPIARFVDRTGGITNCVEPTSKSPLKDFK*
Ga0134127_1152886223300010399Terrestrial SoilGDGMTLLGSSTAVFRGPTITGNAGNGVHLEDGSFAGFVAASITGNLSGTDVDCAPQFPITRFVERTGGITNCVEPVSNAKLKAVE*
Ga0134123_1005793363300010403Terrestrial SoilGGATALFRGPTITGNGGNGVHLEDGSFAGFLAANITGNLSGTDVDCAPQFPITRFVARTGGVTNCVEPASSSKLRAAE*
Ga0105246_1024778613300011119Miscanthus RhizosphereATITGNGGNGVHLEDASFAGFQSATVTGNLSGLDVDCAPQFTITHFVERTGGVTNCVESTGLAQPANVK*
Ga0150983_1551484213300011120Forest SoilLLLYGGTISGSIGNGMTMLAGSTGVFRDGATVTGNGGDGVHLEDASFAGFQSATVTGNLSGLDVNCAPQFTITHFVARTGGITNCFEPASKSQLKDLK*
Ga0137388_1011621113300012189Vadose Zone SoilTVTGNGGDGVHLEDASFAGFQSATVTGNLSGLDVNCAPQFTITHFVARTGGITNCFEPASKSQLKDLK*
Ga0137388_1053150833300012189Vadose Zone SoilVFRDSATITGNGGDGVHLEDASFAGFQSATVTGNLSGLDVNCAPQFTITHFVARTGGITNCVEPASPAQVRDSMK*
Ga0137364_1030134413300012198Vadose Zone SoilGVHLEDGSFAVFFGTTITGNLSGTDIECAPQFPITRFVAGTGGITNCVEPASKSQLKTAQ
Ga0137383_1003948053300012199Vadose Zone SoilLAGAAASFGGTTITGNGGNGVHLEDGSVAVFFGTNVTGNLSGTDVDCAPQFPITRFVETTGGITNCVEPASKSQLKTMK*
Ga0137363_1029300223300012202Vadose Zone SoilNGMTMLGGSTGVFRDSATVTGNGGDGVHLEDASFAGFQSATVTGNLSGLDVNCAPQFTITHFVARTGGITNCVEPTSNSKPKDVE*
Ga0137362_1139349713300012205Vadose Zone SoilLGGAQASFANMTITANGGSGIHLEDGSFAVFFGTTVTGNLSGTDVECAPQFPITRFVAGTGGITNCVEPASKSQLTDLK*
Ga0137381_1147962313300012207Vadose Zone SoilSATFQGPTITANSGVGVHLDDGSFAVFLGANITGNLSGLDVDCEPQFPITRLVETTGGITNCVEPASKSQLKDLK*
Ga0137376_1005842933300012208Vadose Zone SoilDGIKLLSGKAVFLGPTITGNGGVGVHLEDGAFAGFLAASITGNLSGLDVDCEPQFPITRFIDRTGAITNCVEPASAAPRGSKK*
Ga0150985_10431988913300012212Avena Fatua RhizosphereGVGVHLEDGAFAGFLAANITGNLGGLEIECAPRFPITRFIERTGGITNCVEPASASQRKVVE*
Ga0137387_1035784923300012349Vadose Zone SoilMTMRAGSTAVFQDGVTVTGNGGDGIHLEDASFAGFQSATVTGNVSGLDVNCAPQFTITHFVARTGGITNCVEP*
Ga0137384_1118868913300012357Vadose Zone SoilAAAFAGSTTITGNGGSGVYLEDGAFAGFISANITGNLSGTDIVCAPQFPITHFVARTGGITNCVEPASAAK*
Ga0137397_1062196823300012685Vadose Zone SoilVAGSNLRLQGVTITGSTGNGMTMLAGSTAAFLGNTAVTGNGGDGVHLEDASFAGFQSATVTGNLSGLDVNCAPQFTITHFVARTGGITNCVEPSSDSKLKAVE*
Ga0137397_1064812313300012685Vadose Zone SoilSGSIGNGMTLLAGSTAVFRDGATVTGNGGNGVRLEDASFAGFQSATVTGNLSGLDVNCAPQFTITHFVARTGGITNCVEPASPAQARDSMK*
Ga0137359_1144067913300012923Vadose Zone SoilMLAGSTVVFRDGATVIGNGGDGVHLEDASFAGFQSATVTGNLSGLDVNCAPQFTITHFVARTGGITNCVEPASKSQLKDVE*
Ga0137404_1035377133300012929Vadose Zone SoilLYRRGMTMVAGSTAVFRDGTTVTGNGGDGVHLEDASFAGFHSATVTGNLSGLDVNCAPQFTITHFVARTGGITNCFEPASKSQLKTLE*
Ga0137404_1037776013300012929Vadose Zone SoilSFDGMTITANGGSGIHLEDGSFAVFLFGTTTVTGNLSGTDVECAPQFPITRFVETTGGITNCVEPASKSQLKDLK*
Ga0137407_1046205913300012930Vadose Zone SoilTILGGSILVFRNGTTITGNGGNGVHLEDASFAGFQSATVTGNLSGLDVDCAPQFPITRFIDRTGAITNCVEPASAAPRGSKK*
Ga0164303_1021243313300012957SoilNVAFQGPTITGNGGVGVHLEDGAFAGFLAANITGNLGGLDIECSPKFPITRFIDRTGGRTNCVESAATASRRITK*
Ga0164301_1035596223300012960SoilDGSFAAFLAASITGNLSGLDVDCEPQFSIARLVDRTGGITNCVEATSKSQLQDLK*
Ga0164302_1187521113300012961SoilAVGILAAASNLLLPGGTVSGNTGNGMTLLAGSTVVFRYAATITGNGGNGVHLEDASFAGFQSATVTGNLSGLDVDCAPQFTITHFVERTGGVTNCVESTGLAQPGVK*
Ga0134077_1011625313300012972Grasslands SoilIHLEDGAFAGFLAASITGNLSGLDVDCEPQFPITRFIDRTGAITNCVEPASAAQREP*
Ga0164308_1087559423300012985SoilGVHLEDGSFAGFVAANVTGNLSGLDVDCEPQFPITRFVERTGGVTNCVESAVKSASRQTTK*
Ga0164304_1145224813300012986SoilITGNGGVGVHLEDGSFAGFVAANVTGNLSGLDVDCEPQFPITRFVERTGGVTNCVESAVNSASRQTTK*
Ga0157374_1066906823300013296Miscanthus RhizosphereVHLEDGSFAGFLAANITGNLSGTDVDCAPQFPITRFVARTGGVTNCVEPASSSKLRAAE*
Ga0157372_1303945123300013307Corn RhizosphereGANVAFQGPTITGNGGVGVHLEDGAFAGFLAANITGNLGGLDIECTPQFPITRFIDRTGGITNCVESASAAQRETLK*
Ga0157375_1010505943300013308Miscanthus RhizosphereMTLLGSSTAVFRGPTITGNAGKGVHLEDGSFAGFVAASITGNLSGTDVDCAPQFPITRFVERTGGITNCVEPVSNAKLKAVE*
Ga0163163_1021609743300014325Switchgrass RhizosphereHLEDGSFAGFVAASITGNLSGTDVDCAPQFPITRFVERTGGITNCVEPVSNAKLKAVE*
Ga0132258_1070605613300015371Arabidopsis RhizosphereGVHLEDGSFAGFVAASITGNLSGTDVDCAPQFPITRFVERTGGITNCVEPVSNAKLKAVE
Ga0132257_10189739113300015373Arabidopsis RhizosphereLEDGAFAGFLAADITGNLSGLDIDCAPQFPITRFIDRTGGITNCVEPPSNSKLKDVQ*
Ga0066667_1009048343300018433Grasslands SoilASVAFQGPASVAFQGPTITGNGGVGVHLEDGAVAGFLAANITGNLGGLDIECSPQFPITRFIERTGGITNCVEPASSSRQKAAE
Ga0066662_1066928023300018468Grasslands SoilEAIFSGPTITANGGVGVQVMDSSFAGFLAASVTGNLSGLDVDCEAKFPVTSFVDRAGGITNCVDPAAQAQRKSMK
Ga0210403_1098973923300020580SoilGGVGIQVLDGSFAAFLAASITGNLSGLDVDCEPQFPMTRFVDRTGGITNCVEPTSKSPLKDLK
Ga0193709_104194933300021411SoilNMTRTANGGSGIHLEDGSFAVFFGTTVTGNLSGTDVECAPQFPITRFVAGTGGITNCVEPASKSQLNDLK
Ga0247794_1007195913300024055SoilMTLLGSSTAVFRGPTITGNAGNGVHLEDGSFAGFVAASITGNLSGTDVDCAPQFPITRFVERTGGITNCVEPVSNAKLKAVE
Ga0207692_1003962833300025898Corn, Switchgrass And Miscanthus RhizosphereVHLEDASFAGFQSATVTGNSSGLDVNCAPQFTITHFVARTGGITNCVEP
Ga0207680_1081033313300025903Switchgrass RhizosphereGNAGNGVHLEDGSFAGFVAASITGNLSGTDVDCAPQFPITRFVERTGGITNCVEPVSNAKLKAVE
Ga0207700_1102404413300025928Corn, Switchgrass And Miscanthus RhizosphereNGGTGVLIMDSSFAAFLAANVAGNLSGLDIDCEPQFSTARLVDRTGGITNCVEPTGKSPLRDLK
Ga0207664_1100847413300025929Agricultural SoilVQVMDSSFAGFLAASITGNLSGLDVDCEPQFPTARFVDRTGGITNCVEPTSKSPLKDFK
Ga0207664_1170156023300025929Agricultural SoilLGPTITGNGGVGVHLEDGSFAGFVAANITGNLSGLDVDCEPQFPITRFVERTGGVTNCVESAVNSASRQTTK
Ga0207664_1194313413300025929Agricultural SoilFRNGATVTGNGGDGVHLEDASFAGFQSATVTGNLSGLDVNCAPQFTITHFVGRTGGSTNCVEPASNSKEKAVE
Ga0207679_1139749213300025945Corn RhizospherePGSGGDGMTLLGSSTAVFRGPTITGNAGNGVHLEDGSFAGFVAASITGNLSGTDVDCAPQFPITRFVERTGGITNCVEPVSNAKLKAVE
Ga0207679_1219868313300025945Corn RhizosphereNASVAFLGPTITGNGGVGVHLEDGSFAGFVAANITGNLSGLDVDCEPQFPITRFVERTGGVTNCVESAVNSASRQTTK
Ga0207640_1180953913300025981Corn RhizosphereKGREPGSGGDGMTLLGSSTAVFRGPTITGNAGNGVHLEDGSFAGFVAASITGNLSGTDVDCAPQFPITRFVERTGGITNCVEPVSNAKLKAVE
Ga0209871_105597513300026217Permafrost SoilGKAVFLGPTITGNGGVGVHLEDGAFGGFLAASITGNLSGLDVDCEPQFPITRFIDRTGAITNCVEPASKAQRETLK
Ga0209839_1009849313300026294SoilSAGFGGATITGNGGVGVHLEDGAFAGFLGASITGNTGLDVECAPKFPITRFVARTGGITNCVEPASSSQPKPVE
Ga0209152_1030582413300026325SoilAFQGPTITGNGGVGVHLEDGAFAGFLAANITGNLGGLDIECSPQFPITRFIERTGGITNCVEPASSSRQKAAE
Ga0257173_101541113300026360SoilNGGSGVYLEDGAFAGFISANITGNLSGTDIVCAPQFPITHFVERTGGITNCVENAGSALRESKK
Ga0257157_110046723300026496SoilNGGVGVHLEDGAFGGFLAASITGNLGGLDVDCEPQFPITRFIDRTGAITNCVEPASKSKPKDVK
Ga0209805_116338643300026542SoilVHLEDGAFAGFLAASITGNLSGLDVDCEPQFPITRFIDRTGAITNCVEPASAAQRETLK
Ga0208991_100444633300027681Forest SoilLDGGTISGSIGNGMTMLAGSRAAFRDSTAVTGNGGDGVHLEDASFAGFQSATVTGNLSGTDVECAPQFPITRFVAGTGGITNCVEPASKSQLKDLK
Ga0209180_1019182713300027846Vadose Zone SoilHLEDGAFAGFVAANVTGNLSGLDVDCEPQFPITRFVDRTGGVTNCVESAATAAQR
Ga0209180_1023222333300027846Vadose Zone SoilRDSATITGNGGDGVHLEDASFAGFQSATVTGNLSGLDVNCAPQFTITHFVARTGGITNCVEPASPAQVRDSMK
Ga0209583_1023965713300027910WatershedsVFLGPTITGNGGVGVHLEDGAFAGFLSANITGNLGGLDIDCEPQFPVTRFIDRTGGITNCVESASLAPRGTIQK
Ga0137415_1079644923300028536Vadose Zone SoilITGNGGDGVHLEDASFAGFQAATVTGNLSGLDVNCAPQFTITHFVARTGGITNCVEPTSNSKPKDVE
Ga0311333_1014687033300030114FenGNGGNGVYLNDGSLAAFLDTGVTGNLSGLDVDCEPQFPIASTVETTGGITNCVVPASKSKPKAEK
Ga0170823_1011282623300031128Forest SoilGGNVAFQGPTITGNGGVGVRLEDGAFAGFLAANITGNLGGLDIECSPKFPITRFVARTGGITNCVEPASNSQLKAVE
Ga0170824_11127335013300031231Forest SoilGNGVHLEDGAFAGFVAASVTGNLSGLDVDCEPQFPITRFVDRTGGVTNCVESAASTAVRQTTK
Ga0170824_11217025113300031231Forest SoilGGVGVHLEDGAFAGFLSANITGNLGGLDIECSPKFPITRFVARTGGITNCVEPASNSQLKAVE
Ga0170820_1332677033300031446Forest SoilVHLEDGSFAGFLAANITGNLSGLDIECAPKFPITRFVARTGGITNCVEPASNSQPKPLE
Ga0307475_1006490163300031754Hardwood Forest SoilGGAGVLVMDSSFAAFLAASVTGNLSGLDIDCEPQFSIARLVDRTGGITNCVETTSKAQLKDLK
Ga0307475_1089390613300031754Hardwood Forest SoilGSTGVFRDGATVTGNGGDGVHLEDASFAGFQSATVTGNLSGLDVNCAPQFTITHFVARTGGITNCFEPASKSQLKDLK
Ga0307472_10134278223300032205Hardwood Forest SoilGGVGVHLEDGAFAGFLAASITGNLSGLDVDCEPQFPITRFIDRTGAITNCVEPASKSQLKDLK
Ga0335085_1083428733300032770SoilVLRGNSTASFFGPTITGNGGNGVYLEDGSFAGFVSANVTGNQSGLDVDCAPQFPITRFVDRTGGITNCVEPTRSAKP
Ga0335082_1095161123300032782SoilNGGAGVLVQDSSFAAFLATSITGNLSGLDVDCEPQFSIARFVDRTGGITNCVESTSKSQPKDLK
Ga0335070_1144604423300032829SoilLFRGPTITGNGWDGVYLEDGSFAGFLAANITGNLSGLDVECFPQFPITHFVARTGGITNCVEPSGKPQAKGVE
Ga0310810_1043321933300033412SoilTAVFRGPTITGNAGNGVHLEDGSFAGFVAASITGNLSGTDVDCAPQFPITRFVERTGGITNCVEPVSNAKLKAVE


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