Metagenome / Metatranscriptome Family F092477

Basic Information
Family ID	F092477
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	56 residues
Representative Sequence	MNNQAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEFET
Number of Associated Samples	103
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	93.46 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (62.617 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.495 % of family members)
Environment Ontology (ENVO)	Unclassified (37.383 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.121 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.87% β-sheet: 16.98% Coil/Unstructured: 64.15%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF13365	Trypsin_2	8.41
PF13281	MAP3K_TRAF_bd	4.67
PF02590	SPOUT_MTase	0.93
PF00196	GerE	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1576	23S rRNA pseudoU1915 N3-methylase RlmH	Translation, ribosomal structure and biogenesis [J]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.62 %
All Organisms	root	All Organisms	37.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.62 %
cellular organisms	root	All Organisms → cellular organisms	37.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.62 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.62 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	32.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.62 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	31.78 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	30.84 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.93 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	30.84 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.93 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	30.84 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.93 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	30.84 %
Coleofasciculaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae	0.93 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	30.84 %
Allocoleopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Allocoleopsis	0.93 %
Solirubrobacter pauli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	30.84 %
Allocoleopsis franciscana	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Allocoleopsis → Allocoleopsis franciscana	0.93 %
Solirubrobacter pauli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	30.84 %
Allocoleopsis franciscana PCC 7113	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Allocoleopsis → Allocoleopsis franciscana → Allocoleopsis franciscana PCC 7113	0.93 %
Solirubrobacter pauli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459013\|GO6OHWN02F22DP	Not Available	512	Open in IMG/M
3300000956\|JGI10216J12902_117386307	Not Available	702	Open in IMG/M
3300001976\|JGI24752J21851_1060422	Not Available	523	Open in IMG/M
3300005340\|Ga0070689_100303849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1329	Open in IMG/M
3300005344\|Ga0070661_100017015	All Organisms → cellular organisms → Bacteria	5151	Open in IMG/M
3300005363\|Ga0008090_15824493	Not Available	681	Open in IMG/M
3300005437\|Ga0070710_10306839	Not Available	1037	Open in IMG/M
3300005440\|Ga0070705_100843278	Not Available	733	Open in IMG/M
3300005547\|Ga0070693_100235456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1207	Open in IMG/M
3300005575\|Ga0066702_10571673	Not Available	681	Open in IMG/M
3300005718\|Ga0068866_10491962	Not Available	810	Open in IMG/M
3300005719\|Ga0068861_101618048	Not Available	638	Open in IMG/M
3300005719\|Ga0068861_101768654	Not Available	612	Open in IMG/M
3300006028\|Ga0070717_10164708	All Organisms → cellular organisms → Bacteria	1925	Open in IMG/M
3300006175\|Ga0070712_100915286	Not Available	756	Open in IMG/M
3300006604\|Ga0074060_11220460	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300006755\|Ga0079222_10000516	All Organisms → cellular organisms → Bacteria	9343	Open in IMG/M
3300006804\|Ga0079221_11232639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Allocoleopsis → Allocoleopsis franciscana → Allocoleopsis franciscana PCC 7113	583	Open in IMG/M
3300006804\|Ga0079221_11809339	Not Available	500	Open in IMG/M
3300006914\|Ga0075436_100930982	Not Available	651	Open in IMG/M
3300006954\|Ga0079219_10573197	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300007076\|Ga0075435_100102840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2368	Open in IMG/M
3300009093\|Ga0105240_11385866	Not Available	739	Open in IMG/M
3300009100\|Ga0075418_12329991	Not Available	584	Open in IMG/M
3300009156\|Ga0111538_11079421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1015	Open in IMG/M
3300009162\|Ga0075423_12045911	Not Available	620	Open in IMG/M
3300009176\|Ga0105242_10515151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1140	Open in IMG/M
3300009545\|Ga0105237_12559339	Not Available	521	Open in IMG/M
3300009789\|Ga0126307_11188782	Not Available	617	Open in IMG/M
3300009840\|Ga0126313_11635061	Not Available	537	Open in IMG/M
3300010036\|Ga0126305_10614517	Not Available	731	Open in IMG/M
3300010041\|Ga0126312_10794637	Not Available	686	Open in IMG/M
3300010042\|Ga0126314_10172834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1514	Open in IMG/M
3300010154\|Ga0127503_10691036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1209	Open in IMG/M
3300010320\|Ga0134109_10143449	Not Available	856	Open in IMG/M
3300010358\|Ga0126370_10122777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1844	Open in IMG/M
3300010360\|Ga0126372_11165882	Not Available	793	Open in IMG/M
3300010400\|Ga0134122_11853442	Not Available	637	Open in IMG/M
3300010401\|Ga0134121_10161238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1919	Open in IMG/M
3300010401\|Ga0134121_12215361	Not Available	587	Open in IMG/M
3300012207\|Ga0137381_10322307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1346	Open in IMG/M
3300012212\|Ga0150985_122986323	Not Available	934	Open in IMG/M
3300012503\|Ga0157313_1008601	Not Available	826	Open in IMG/M
3300012902\|Ga0157291_10317376	Not Available	547	Open in IMG/M
3300012909\|Ga0157290_10303378	Not Available	589	Open in IMG/M
3300012937\|Ga0162653_100075907	Not Available	546	Open in IMG/M
3300013105\|Ga0157369_10645769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1091	Open in IMG/M
3300014166\|Ga0134079_10104510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1086	Open in IMG/M
3300014745\|Ga0157377_10385111	Not Available	951	Open in IMG/M
3300015077\|Ga0173483_10319276	Not Available	768	Open in IMG/M
3300015373\|Ga0132257_103896050	Not Available	543	Open in IMG/M
3300015374\|Ga0132255_100877496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1340	Open in IMG/M
3300016341\|Ga0182035_12114552	Not Available	511	Open in IMG/M
3300016445\|Ga0182038_11319749	Not Available	645	Open in IMG/M
3300018432\|Ga0190275_10267419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1659	Open in IMG/M
3300018466\|Ga0190268_10478080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	836	Open in IMG/M
3300019279\|Ga0184642_1012854	Not Available	543	Open in IMG/M
3300019767\|Ga0190267_10628072	Not Available	672	Open in IMG/M
3300021478\|Ga0210402_10450018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1196	Open in IMG/M
3300021510\|Ga0222621_1084280	Not Available	673	Open in IMG/M
3300021560\|Ga0126371_13353239	Not Available	541	Open in IMG/M
3300022195\|Ga0222625_1145965	Not Available	608	Open in IMG/M
3300022694\|Ga0222623_10146598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	919	Open in IMG/M
3300025898\|Ga0207692_10636220	Not Available	688	Open in IMG/M
3300025901\|Ga0207688_10386000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	867	Open in IMG/M
3300025905\|Ga0207685_10293482	Not Available	802	Open in IMG/M
3300025906\|Ga0207699_10118174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1710	Open in IMG/M
3300025916\|Ga0207663_10441623	Not Available	1002	Open in IMG/M
3300025926\|Ga0207659_10102839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2157	Open in IMG/M
3300025931\|Ga0207644_10362918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1178	Open in IMG/M
3300025935\|Ga0207709_11831862	Not Available	505	Open in IMG/M
3300025936\|Ga0207670_10046298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2889	Open in IMG/M
3300025939\|Ga0207665_10120775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1851	Open in IMG/M
3300025949\|Ga0207667_10426184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1349	Open in IMG/M
3300025972\|Ga0207668_11786818	Not Available	555	Open in IMG/M
3300027646\|Ga0209466_1123658	Not Available	526	Open in IMG/M
3300027909\|Ga0209382_10474646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1382	Open in IMG/M
3300028707\|Ga0307291_1103258	Not Available	711	Open in IMG/M
3300028708\|Ga0307295_10105055	Not Available	763	Open in IMG/M
3300028712\|Ga0307285_10124261	Not Available	694	Open in IMG/M
3300028715\|Ga0307313_10120832	Not Available	802	Open in IMG/M
3300028720\|Ga0307317_10141330	Not Available	806	Open in IMG/M
3300028721\|Ga0307315_10075753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	966	Open in IMG/M
3300028787\|Ga0307323_10027438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1968	Open in IMG/M
3300028802\|Ga0307503_10782203	Not Available	543	Open in IMG/M
3300028807\|Ga0307305_10401437	Not Available	619	Open in IMG/M
3300028811\|Ga0307292_10041792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1693	Open in IMG/M
3300028814\|Ga0307302_10453395	Not Available	635	Open in IMG/M
3300028876\|Ga0307286_10028776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1823	Open in IMG/M
3300028876\|Ga0307286_10415715	Not Available	505	Open in IMG/M
3300028880\|Ga0307300_10110764	Not Available	836	Open in IMG/M
3300030903\|Ga0308206_1197179	Not Available	508	Open in IMG/M
3300031092\|Ga0308204_10300698	Not Available	537	Open in IMG/M
3300031573\|Ga0310915_10456345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	908	Open in IMG/M
3300031681\|Ga0318572_10204046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1155	Open in IMG/M
3300031731\|Ga0307405_10082126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2108	Open in IMG/M
3300031795\|Ga0318557_10438449	Not Available	601	Open in IMG/M
3300031939\|Ga0308174_11353576	Not Available	609	Open in IMG/M
3300031947\|Ga0310909_10122245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2116	Open in IMG/M
3300031959\|Ga0318530_10302847	Not Available	661	Open in IMG/M
3300032002\|Ga0307416_101024515	Not Available	929	Open in IMG/M
3300032005\|Ga0307411_11575212	Not Available	605	Open in IMG/M
3300032068\|Ga0318553_10373492	Not Available	746	Open in IMG/M
3300032080\|Ga0326721_10706965	Not Available	623	Open in IMG/M
3300032180\|Ga0307471_100942304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1031	Open in IMG/M
3300032205\|Ga0307472_102039188	Not Available	575	Open in IMG/M
3300034819\|Ga0373958_0144054	Not Available	592	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.96%
Host-Associated	Host-Associated	28.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.29%
Plants	Host-Associated → Plants	28.04%
Aquatic	Environmental → Aquatic	4.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.35%
Freshwater	Environmental → Aquatic → Freshwater	2.80%
Sediment	Environmental → Aquatic → Sediment	1.87%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.02%
Loam	Environmental → Terrestrial → Soil → Loam	12.15%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.54%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.21%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.28%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.61%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.74%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.87%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001976	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012503	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_R	Host-Associated	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N57_01090320	2170459013	Grass Soil	MNNQAGDIQASRIRIASTDEIAAALDSSGLRMDRAVIVLVGGAGTMGEKEFETVAQVLADEVVPVA
JGI10216J12902_1173863073	3300000956	Soil	MGRPVVGSSRQRGAPLNDQAGDIEAPRIRIVGTDEVAAALDSAGLRPDRAVIVLVGGADGMGEKEFETVAQVVRDEVVPVAERRDAVVI
JGI24752J21851_10604222	3300001976	Corn, Switchgrass And Miscanthus Rhizosphere	MNDQAGDIQAPRIRIASTDEIAAALDSAGLRLHRTVVVLVGGADTMGEKEFATVARVLRDEVVPVAERRDAV
Ga0070689_1003038493	3300005340	Switchgrass Rhizosphere	MNDQAGDIQAPRIRIASTDEIAAALDSAGLRLHRTVVVLVGGADTMGEKEFATVARV
Ga0070661_1000170151	3300005344	Corn Rhizosphere	MDDQAGGIQAPRIRIVGTDEIAAALDSAGLGPDRAVIVLVGGADGMGEKEFETVAKVLRDEVVPVAERRNAV
Ga0008090_158244932	3300005363	Tropical Rainforest Soil	MNNQAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIVLVGGADTMGEKEFETVAQVLRDEVVPVAERRDAV
Ga0070710_103068393	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MNNQAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEF
Ga0070705_1008432781	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MNDQAGDIQAPRIRIASTDEIAAALDSAGLRLHRTVVVLVGGADTMGEKEFATVARVLRDEVVPVAE
Ga0070693_1002354562	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MDDQAGGIQAPRIRIVGTDEIAAALDSAGLGPDRAVIVLVG
Ga0066702_105716733	3300005575	Soil	MNNQAGDIRASRIRIASTDEIAAALNSAGLCLDRAVIVLVGGAGTMGEKEFETVAQVLRDEVVPVAERRD
Ga0068866_104919621	3300005718	Miscanthus Rhizosphere	MNNQAGDIQASHIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKESETVAQVLRDEVVPVAERR
Ga0068861_1016180481	3300005719	Switchgrass Rhizosphere	MNDQSGDIQAARIRIASTDQIAAALDSAGLRLDRAVIVLVGGAGIMGEKEFETVAQVLR
Ga0068861_1017686541	3300005719	Switchgrass Rhizosphere	MNDQAGDIRAPRIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGIMGEKEFETVAQVLR
Ga0070717_101647083	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MNNQAGDIQASHIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEF
Ga0070712_1009152861	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNNQAGDIQASHIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEFETVAKV
Ga0074060_112204603	3300006604	Soil	MNDQSGDIQAARIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEFETVAQVLRDEVVPVAERRDAVVI
Ga0079222_100005161	3300006755	Agricultural Soil	MNNQAGDIQGSRIRIASTDEIAAALDSAGLRPDRAVIVLVGGAGTMGEKESETVAQVLRDEVVPVAERRDAVVI
Ga0079221_112326392	3300006804	Agricultural Soil	MNNQAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIVLVGGDGTMGEKEFETVAQVLRDEVVPVAERRDA
Ga0079221_118093392	3300006804	Agricultural Soil	MNNQAGDIQASCIRIASIDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEFETVAQVLRDEVVPVAERRDAVVI
Ga0075436_1009309822	3300006914	Populus Rhizosphere	MNDQSGDIQSGDIQSACIGITNTDEIAAALDSAGLRLDRAVIVLVGGADIMGEKEFE
Ga0079219_105731972	3300006954	Agricultural Soil	MNEQAGDIQAPRIRIVGTDDIAAALDSAGVRRDRVVIVLVGGASGMGAKDIEAVAEVLRDEVVPIA
Ga0075435_1001028404	3300007076	Populus Rhizosphere	MNNQAGDIQASHIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEFETVAKVLRD
Ga0105240_113858661	3300009093	Corn Rhizosphere	MNDQSGDIQATRIRIASTDEIPAALDSAGLRLDRAVIVLVGGAGIMGEKE
Ga0075418_123299911	3300009100	Populus Rhizosphere	MDDQAGGIQAPRIRIVGTDEIAAALDSAGLGPDRAVIVLVGGADGM
Ga0111538_110794212	3300009156	Populus Rhizosphere	MNDQSGDIQAARIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGIMGEKEFETVAQVLRDEVVPVAERRD
Ga0075423_120459111	3300009162	Populus Rhizosphere	MNDQSGDIQSGDIQSACIGITNTDEIAAALDSAGLRLDRAVIVLVGGADIMGEKEFEAVAQVLREEVVPVAERRDAVA*
Ga0105242_105151511	3300009176	Miscanthus Rhizosphere	MDDQAGGIQAPRIRIVGTDEIAAALDSAGLGPDRAVIVLVGGADGMGEKEFET
Ga0105237_125593391	3300009545	Corn Rhizosphere	MDDQAGGIQAPRIRIVGTDEIAAALDSAGLGPDRAVIVLVGGADGMGEKEF
Ga0126307_111887822	3300009789	Serpentine Soil	MNDQSGDIQTSRIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEREFETVAQVLRDEVVPVA
Ga0126313_116350611	3300009840	Serpentine Soil	MNDQSGDIPAARIRIESTDEIAASLDSAGLRLDRAVIVLVGGAGIMGEKEF
Ga0126305_106145171	3300010036	Serpentine Soil	MNDQAGDIQTSRIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGAMGEKEFETVAQVLR
Ga0126312_107946371	3300010041	Serpentine Soil	MNDQSGDIQAACIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGIMGEKEFE
Ga0126314_101728343	3300010042	Serpentine Soil	MHDQSGDIQAARIRIASTDEIAAALDSAGLRLDRTVIVLVGGAG
Ga0127503_106910361	3300010154	Soil	MNNQAGDIQASRIRIASTDEIAVALDSAGLRLDRAVIVLVG
Ga0134109_101434493	3300010320	Grasslands Soil	MNNQAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEFETVAQVLRDEV
Ga0126370_101227772	3300010358	Tropical Forest Soil	MNNQAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGAMGEKEFETVAQVLRDEVVPVAERRDAVVI
Ga0126372_111658821	3300010360	Tropical Forest Soil	MNNQARDIQASRIRIARPDELAAALDSAGLRLDRAVIVLVGGAGTMGEKELETVAQVLRDEVVPVAE
Ga0134122_118534421	3300010400	Terrestrial Soil	MNDQAGDIQAPRIRIASTDEIAAALDSAGLRLDRAVIALVGGAGIM
Ga0134121_101612383	3300010401	Terrestrial Soil	MNDQAGDIQAPRIRIASTDEIAAALDSAGLRLHRTVVVLVGGADTMGEKEFATVA
Ga0134121_122153611	3300010401	Terrestrial Soil	MNNQAGDIQASHIRIASTDEIAAALDSAGLRLDRAVIVLVGGGGTMGEKE
Ga0137381_103223071	3300012207	Vadose Zone Soil	MNNQAGDIQASRIRIASTDEIAAALDCAGLRLDRAVIVLVGGAGTMGEKEFETVAQVLRDEVVPVAERRDAV
Ga0150985_1229863231	3300012212	Avena Fatua Rhizosphere	MNDQAGNLQAARIRVASSDEIAAALDSAGLRLDRAVIVLVGGADIMGEEEFEKM
Ga0157313_10086013	3300012503	Arabidopsis Rhizosphere	MDDQAGGIQAPRIRIVGTDEIAAALDSAGLGPDRAVIVLVGGADGMGEKEFETVAKVLRDEVVPVAERRNA
Ga0157291_103173762	3300012902	Soil	MNDQAGDIQAARIRFASTDEIAAALDSAGLRLDRAVIVLVGGAGIMGEKEFETVAQVLRDEV
Ga0157290_103033781	3300012909	Soil	MNDQSGDIQAAPIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGAMGEKEFETVAQVLRDEV
Ga0162653_1000759072	3300012937	Soil	MNDQAGDIQASLIRIASTDEIAAALDSAGLRLDRAVIVLVG
Ga0157369_106457691	3300013105	Corn Rhizosphere	MNDQAGDIQAACIRIASTDEIAPALDSAGLRLDRAVIVLVGGAGIMGEKEFETVAQVLRDEVVPVAERRDAVV
Ga0134079_101045101	3300014166	Grasslands Soil	VNNQAGDIQASRIRIASTDDIAAALDSAGLRLDRAVIVLVGGAGTMGEK
Ga0157377_103851111	3300014745	Miscanthus Rhizosphere	MDDQAGGIQAPRIRIVGTDEIAAALDSAGLGPDRAVIVWTHRRSK*
Ga0173483_103192762	3300015077	Soil	MNDQSGDIQAARIRIANTDEIAAALDSAGLRLDRAVIVLVGGAGIMGEKEFETVAQVLRDEVVPVAE
Ga0132257_1038960502	3300015373	Arabidopsis Rhizosphere	MNDQAGNIQASLIRIASTDEIAAALDSAGLRLHRTVVVLVGGADTMGEKEFATVARVLRDEVVPVAE
Ga0132255_1008774961	3300015374	Arabidopsis Rhizosphere	MNDQAGNIQASLIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGENEFETVARMLRDEV
Ga0182035_121145521	3300016341	Soil	MNNRAGDIQASRIRIASTDEIAAALDNAGLRLDRAVIVLVGGASTMGENEFETVAKVLRDEVVPVAERRDAV
Ga0182038_113197492	3300016445	Soil	MNNRAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIVLVGG
Ga0190275_102674191	3300018432	Soil	VNEQAGEIRDTTRIRIASAHDIAAALDSAGLRVDRAVIVLVGGADIMGEKELETVAQVL
Ga0190268_104780801	3300018466	Soil	MNDQSGDIQASHIRIASTDEITAALDSAGLRLDRAVIVLV
Ga0184642_10128541	3300019279	Groundwater Sediment	MNDQAGDIQASCIRIASTDEIAAALDSAGLRLNRAVIVLVGGAGAMGEKEFETVAQVLRD
Ga0190267_106280721	3300019767	Soil	MNDQSGDIQAARIRIASTDEIAAALDSAGLRLDRAVIVLVGGA
Ga0210402_104500181	3300021478	Soil	MNNQAGDIQASRIRIASTDEIAAALDSAGLRLHRAVIVLVG
Ga0222621_10842802	3300021510	Groundwater Sediment	MNDQAGNIQASLIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGAMGEKEFETV
Ga0126371_133532391	3300021560	Tropical Forest Soil	MNNQAADIQASRIRIASTDEVAAALDSAGLRLDRAVIVLVGGAGTIGEKEFETVAQVLRD
Ga0222625_11459651	3300022195	Groundwater Sediment	MNDQAGDIQASCIRIASTDEIAAALDSAELSLDRAVIVLVGGAGTMGE
Ga0222623_101465982	3300022694	Groundwater Sediment	MNDQAGDIQASCIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGIMGEKEFET
Ga0207692_106362203	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MNNQAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEFET
Ga0207688_103860002	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MSDQAGNIQAAHIRVASTDEIVAALASAGLRLDRPVIVLVGGADIMGEEDF
Ga0207685_102934821	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MNNQAGDIQASHIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEFETVAKVLRDEVVP
Ga0207699_101181743	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MNNQAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIVLV
Ga0207663_104416233	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MNNQAGDIQASHIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEFETVAKVLRDEV
Ga0207659_101028391	3300025926	Miscanthus Rhizosphere	MNDQAGDIQAPRIRIASTDEIAAALDSAGLRLHRTVVVLVGGADTMGEKEFAT
Ga0207644_103629181	3300025931	Switchgrass Rhizosphere	MNDQAGDIQAPRIRIASTDEIAAALDSAGLRLHRTVVVLVGG
Ga0207709_118318621	3300025935	Miscanthus Rhizosphere	MNDQAGNIQASLIRIASTDEIAAALGSAGLRLDRTVIVLVGGAG
Ga0207670_100462981	3300025936	Switchgrass Rhizosphere	MNDQAGDIQAPRIRIASTDEIAAALDSAGLRLHRTVVVLVGGADTMGEKEFATVARVLRD
Ga0207665_101207751	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MNNQAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIVLVGGGGTMGEKEFETVAQVLRDEVVPVAERR
Ga0207667_104261841	3300025949	Corn Rhizosphere	MNDQAGDIQAPRIRIASTDEIAAALDSAGLRLDRAVIVLVGGA
Ga0207668_117868181	3300025972	Switchgrass Rhizosphere	MNDQSGDIQAARIRIASTDQIAAALDSAGLRLDRAVIVLVGGAGIMGEKEFETVAQVLRDEVVPVA
Ga0209466_11236581	3300027646	Tropical Forest Soil	MNNQAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEREFETVA
Ga0209382_104746461	3300027909	Populus Rhizosphere	MNDQAGDIQAPRIRIASTDEIAAALDSAGLRLHRTVVV
Ga0307291_11032583	3300028707	Soil	MNDQSGDIQAARIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGIMGEKEF
Ga0307295_101050551	3300028708	Soil	MNDQAGDIQASCIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGAMGEKEFETVAQVLR
Ga0307285_101242612	3300028712	Soil	MNDQAGDIQASCIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEFETVAQVLRDEVVPVAER
Ga0307313_101208321	3300028715	Soil	MNDQAGDIQASCIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGAMGEKEF
Ga0307317_101413301	3300028720	Soil	MNDQAGDIQASCIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEFETVAQVLR
Ga0307315_100757531	3300028721	Soil	MNDQVGDIQAPHIRIASTDEIAAALDSAGLRLDRAVIV
Ga0307323_100274382	3300028787	Soil	MNDQAGNIQASLIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGAMGEKEFETVAQVLRDEVMPVAERRDAVVI
Ga0307503_107822031	3300028802	Soil	MNDQAGDIQASCIRIASTDEIAAALDSAGLPRDRAVIVLVGGAGTMGEKEFETVAQVLR
Ga0307305_104014371	3300028807	Soil	MNNQAGDIQASCIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMG
Ga0307292_100417921	3300028811	Soil	MNDQAGDIQAARIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGIMGEKEF
Ga0307302_104533952	3300028814	Soil	MNDQAGDIQASCIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEFETVAQVLRE
Ga0307286_100287762	3300028876	Soil	MNDQAGNIQASLIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGAMGEKEF
Ga0307286_104157152	3300028876	Soil	MNDQSGDIQAARIRIASTDEIAAALDSAGLRLDRAVIVLV
Ga0307300_101107641	3300028880	Soil	MNDQAGDIQASCIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEFETVAQVLRDEVVPVAERR
Ga0308206_11971792	3300030903	Soil	MNDPSGDIQGARIRIASTDEIAAALDSAGLRLDRAVIVLVGGAG
Ga0308204_103006981	3300031092	Soil	MNDQAGDIQASCIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEFKTV
Ga0310915_104563451	3300031573	Soil	MNNRAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIV
Ga0318572_102040463	3300031681	Soil	MNNQAGDIQASRIRIASTDEIAVALDSAGLRLDRAVIVLVGGAGTMGEKEFETVAQVLRDEVVPVAERR
Ga0307405_100821263	3300031731	Rhizosphere	LNDQAGHLQAPLLRIVDTDEIAAALDSAGLRPDRAVIVLV
Ga0318557_104384492	3300031795	Soil	MNNRAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIVL
Ga0308174_113535761	3300031939	Soil	MKNQAGDIQASRIRIASTGGIAAALASAGLRLDRAVIVLVGGAGTMGEKEFETVAQVLRDEVVPVAERRD
Ga0310909_101222453	3300031947	Soil	MNNRAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGAMGEKE
Ga0318530_103028473	3300031959	Soil	MNNRAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKEFETVAQVLRDEVVP
Ga0307416_1010245151	3300032002	Rhizosphere	MDDQAGDIQAPRIRIVDTDEIAAALDSAGLRRDRAVIVLVGGADGMGEK
Ga0307411_115752121	3300032005	Rhizosphere	LNDQAGHLQAPLLRIVDTDEIAAALDSAGLRPDRAVIVLVGGAGGMGGKDFETVAR
Ga0318553_103734922	3300032068	Soil	MNNQAGDIQASHIRIASTDEIAAALDNAGLRLDRAVIVLVGGASTM
Ga0326721_107069651	3300032080	Soil	MNDQAGNLQAARIRVASSDEIAAALDSAGLRLDRAVIVLVGGADIMG
Ga0307471_1009423043	3300032180	Hardwood Forest Soil	MNNQAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTIGE
Ga0307472_1020391882	3300032205	Hardwood Forest Soil	MNNQAGDIQASRIRIASTDEIAAALDSAGLRLDRAVIVLVGGAGTMGEKE
Ga0373958_0144054_439_591	3300034819	Rhizosphere Soil	MNNQAGDIQASHIRIASTDEIAAALDSAGLRLDRAVIVLVGGADGMGEKEF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092477

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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