Metagenome / Metatranscriptome Family F092467

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092467
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	41 residues
Representative Sequence	FDSEDDYRKGDEILSAMPAGDTPGQRTSVTKYNVATRMSS
Number of Associated Samples	97
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	11.11 %
% of genes near scaffold ends (potentially truncated)	14.95 %
% of genes from short scaffolds (< 2000 bps)	15.89 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (85.981 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (16.822 % of family members)
Environment Ontology (ENVO)	Unclassified (29.907 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.009 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.65% β-sheet: 0.00% Coil/Unstructured: 82.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF04029	2-ph_phosp	10.28
PF01872	RibD_C	8.41
PF08281	Sigma70_r4_2	5.61
PF13191	AAA_16	3.74
PF04542	Sigma70_r2	2.80
PF08240	ADH_N	2.80
PF06983	3-dmu-9_3-mt	1.87
PF01575	MaoC_dehydratas	1.87
PF04261	Dyp_perox	1.87
PF07995	GSDH	0.93
PF08808	RES	0.93
PF00004	AAA	0.93
PF14489	QueF	0.93
PF04828	GFA	0.93
PF00542	Ribosomal_L12	0.93
PF00082	Peptidase_S8	0.93
PF00487	FA_desaturase	0.93
PF07883	Cupin_2	0.93
PF12697	Abhydrolase_6	0.93
PF03605	DcuA_DcuB	0.93
PF00565	SNase	0.93
PF02803	Thiolase_C	0.93
PF00342	PGI	0.93
PF13189	Cytidylate_kin2	0.93
PF08327	AHSA1	0.93
PF00392	GntR	0.93
PF06831	H2TH	0.93
PF02801	Ketoacyl-synt_C	0.93
PF00766	ETF_alpha	0.93
PF03795	YCII	0.93
PF02909	TetR_C_1	0.93
PF04101	Glyco_tran_28_C	0.93
PF00501	AMP-binding	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2045	Phosphosulfolactate phosphohydrolase or related enzyme	Coenzyme transport and metabolism [H]	20.56
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	8.41
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	8.41
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	2.80
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	2.80
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	2.80
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	2.80
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	1.87
COG2837	Periplasmic deferrochelatase/peroxidase EfeB	Inorganic ion transport and metabolism [P]	1.87
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	1.87
COG2025	Electron transfer flavoprotein, alpha subunit FixB	Energy production and conversion [C]	0.93
COG5654	Predicted toxin component of a toxin-antitoxin system, contains RES domain	Defense mechanisms [V]	0.93
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.93
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.93
COG2704	Anaerobic C4-dicarboxylate transporter	Carbohydrate transport and metabolism [G]	0.93
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.93
COG0166	Glucose-6-phosphate isomerase	Carbohydrate transport and metabolism [G]	0.93
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.93
COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	Transcription [K]	0.93
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	0.93
COG0222	Ribosomal protein L7/L12	Translation, ribosomal structure and biogenesis [J]	0.93
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.98 %
All Organisms	root	All Organisms	14.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.98 %
cellular organisms	root	All Organisms → cellular organisms	14.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.98 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	14.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.98 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	9.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.98 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8.41 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4.67 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.93 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.98 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	3.74 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.74 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.74 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459018\|G1P06HT02IHWLG	Not Available	600	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1058854	Not Available	510	Open in IMG/M
3300005167\|Ga0066672_10713707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	641	Open in IMG/M
3300005336\|Ga0070680_101096917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	688	Open in IMG/M
3300005560\|Ga0066670_10564538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	695	Open in IMG/M
3300005569\|Ga0066705_10983963	Not Available	500	Open in IMG/M
3300006852\|Ga0075433_11618948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	558	Open in IMG/M
3300006904\|Ga0075424_101951610	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300011269\|Ga0137392_10795168	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300012198\|Ga0137364_10743218	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300012199\|Ga0137383_10978985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	617	Open in IMG/M
3300015356\|Ga0134073_10246072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	615	Open in IMG/M
3300016270\|Ga0182036_11518612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	563	Open in IMG/M
3300025538\|Ga0210132_1002326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2358	Open in IMG/M
3300025917\|Ga0207660_10971426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	693	Open in IMG/M
3300026550\|Ga0209474_10226516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1173	Open in IMG/M
3300028811\|Ga0307292_10102889	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300032075\|Ga0310890_11006312	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.11%
Host-Associated	Host-Associated	14.95%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.44%
Plants	Host-Associated → Plants	14.95%
Aquatic	Environmental → Aquatic	4.67%
Solid Waste	Engineered → Solid Waste	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.21%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.80%
Marine	Environmental → Aquatic → Marine	1.87%
Sediment	Environmental → Aquatic → Sediment	1.87%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Roots	Host-Associated → Plants → Roots	0.93%
Grass	Engineered → Solid Waste → Grass	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.28%
Loam	Environmental → Terrestrial → Soil → Loam	8.41%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.74%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.87%
Ice	Environmental → Aquatic → Freshwater → Ice	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%
Composting	Engineered → Solid Waste → Grass → Composting	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	22.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.28%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.74%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.80%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.35%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.35%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.80%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.80%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.87%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.87%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.93%
Permafrost And Active Layer Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost And Active Layer Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
2170459018	Litter degradation MG2	Engineered	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300002028	Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies - Sample_A17	Environmental	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012529	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ568 (21.06)	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300013763	Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014299	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015261	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG	Host-Associated	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024187	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK13	Environmental	Open in IMG/M
3300024290	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08	Environmental	Open in IMG/M
3300025538	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033806	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L02_01265090	2170459007	Grass Soil	ALAIVFFDSEDDYDRGDKILSAMPAADTPGQRTSVKKYQVAVRRNP
2MG_01584570	2170459018	Switchgrass, Maize And Mischanthus Litter	LVVLFFENEDDYRRGDETLSAMPASDTPGQRTSVTKYNVAMRMSD
AP72_2010_repI_A10DRAFT_10588541	3300000651	Forest Soil	VVLFFENEDDYQRGHETLNAMPASDTPGQRTSVSKYNVAMRMSD*
A17_10907542	3300002028	Permafrost And Active Layer Soil	DKTLVVVLFENEDDYRKGDEILSAMPKDDTPGRRTSVTKYDVALRQKAG*
Ga0055498_101292772	3300004058	Natural And Restored Wetlands	ETEEAYARGDEILDAMPTGDTPGQRTSVSKYDVALRMTT*
Ga0062595_1011108832	3300004479	Soil	FDNEDDYRKGDEILNAMPAGDTPGQRTSVKKYDLAMRMSN*
Ga0062595_1012869411	3300004479	Soil	ENEDDYRLGDETLSAMPAGDTPGQRTSVTKYQVAIRMAD*
Ga0062591_1001458281	3300004643	Soil	AVIIFDNEDDYKKGDEILSGMPAGDTPGQRTSVTKYNVAMRMKS*
Ga0066672_107137071	3300005167	Soil	PEAEKSLVVIIFENEDDYRAGDEILSAMPAGDTPGQRTSVTKFNVATRMSN*
Ga0066677_104400582	3300005171	Soil	VIIFENEDDYRAGDEILSAMPAGDTPGQRTSVTKYNVATRMSN*
Ga0066688_104726151	3300005178	Soil	VVVFENEDDYKRGDEILSAMPASDTPGSRTSVKKYDVAVHMKP*
Ga0066688_107665611	3300005178	Soil	LVVIIFENEDDYRAGDEILSAMPAGDTPGQRTSVTKYNVATRMSS*
Ga0070680_1010969171	3300005336	Corn Rhizosphere	LAIVFFENEDDYRLGDETLSAMPAGDTPGQRTSVTKYQVAIRMAD*
Ga0066681_109440011	3300005451	Soil	FENEDDYQKGDEILNAMPAEDTPGRRTSVKKYDVAMRMKS*
Ga0066687_106939491	3300005454	Soil	ENEDDYRAGDEILSAMPAGDTSGQRTSVTKYNVATRMSN*
Ga0073909_103330381	3300005526	Surface Soil	EKSIAIVIFDNEDDYKKGDEILGSMPSGDTPGNRTSVAKYNVATRMKS*
Ga0070684_1006782222	3300005535	Corn Rhizosphere	IVFFETEEDYQTGDKILSAMPAADTPGKRTSVTKYNVATRMKS*
Ga0066670_100577984	3300005560	Soil	EKSLVVIIFENEDDYRAGDEILSAMPAGDTPGQRTSVTKYNVATRMSN*
Ga0066670_105645384	3300005560	Soil	LFFENEDDYRRGDETLSAMPASDTPGQRTSVAKYNVAMRMSD*
Ga0066705_104083312	3300005569	Soil	AIVIFDNEDDYRKGAEILDAMPGPDTPGQRTSVSKYDVAVRMSS*
Ga0066705_109839631	3300005569	Soil	AIVFFENEDDYQKGHEILDAMPASDTPGQRTAVTKYDVAVRMTN*
Ga0066654_109216641	3300005587	Soil	SLAIVIFDNEDDYRKGDEILGSMPASDTPGTRTSVKKYNVAHRMSM*
Ga0066706_111056444	3300005598	Soil	VIFENEDDYRKGDEILSAMPAGDTPGTRTSVSKHDVALRMKS*
Ga0066706_111380321	3300005598	Soil	IFESDEDYQKGDEALNAMSGEDTPGQRTSVTKHNVAARMKS*
Ga0068858_1024085152	3300005842	Switchgrass Rhizosphere	FFETEEDYQTGDKILSAMPAADTPGKRTSVTKYNVATRMKS*
Ga0066651_103810042	3300006031	Soil	EEDYRKGDEILSAMPAGDVPGQRSSVTKYDVAMRMKS*
Ga0070712_1013241972	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	IVIVDSEDDYRKANEILEAMPGPDTPGSRTSVTKYDVAIRANA*
Ga0066659_110904511	3300006797	Soil	EDDYRKADEILSAMPAGDTPGQRTSVTKYNVATRMKP*
Ga0079221_107461031	3300006804	Agricultural Soil	KSIAIVIFDDEDDYARGDEIHSNMPAPETRGQRTSVTTYNVAMRMKS*
Ga0075433_116189482	3300006852	Populus Rhizosphere	SEDDYRRGDEVLSAMPAGDTPGQRTGVGKYDVAVRMAV*
Ga0075434_1026299271	3300006871	Populus Rhizosphere	SEDDYRKGDEILSSMPAGNTPGQRTSVTKYNVATRMSN*
Ga0075426_101149521	3300006903	Populus Rhizosphere	YRKGDEILSSMPAGNTPGQRTSVTKYNVATRMSN*
Ga0075424_1010748031	3300006904	Populus Rhizosphere	NEDDYKKGDEILSAMPTGDTPGQRTSVSKYNVAVRMKN*
Ga0075424_1019516101	3300006904	Populus Rhizosphere	AETSTVVVIFDNEDDYRTGDEILNNMDAGDTPGTRTSVKKHDVAMRMSN*
Ga0075424_1020063521	3300006904	Populus Rhizosphere	SLVLVLFESEDDYRKGDEILSSMPAGNTPGQRTSVTKYNVATRMSN*
Ga0079219_104909082	3300006954	Agricultural Soil	EADYQKGHEILDAMPASDTPGRRASVTKYDVAMRMSM*
Ga0105240_112367902	3300009093	Corn Rhizosphere	SLAIVIFDNEDDYRKGDEILDSMPASDTPGQRTSVTKYHVAHRMSM*
Ga0066709_1015296142	3300009137	Grasslands Soil	FDNEDDYKRGDEILSNMPAADTPGRRTSVQRYDVAARMSS*
Ga0066709_1027612251	3300009137	Grasslands Soil	EDDYKKGDEILSAMPAGDTPGQRTSVKKYNVAMRMKS*
Ga0126314_101996832	3300010042	Serpentine Soil	DYTRGDETLNAMSTTDTPGQRTSVKRYDVAMRMAV*
Ga0127456_11618021	3300010140	Grasslands Soil	VIVFFDSEDDYRKGDEILSAMPAGDTPGQRTSVTKYNVATRMSS*
Ga0134088_102450692	3300010304	Grasslands Soil	FETEDDYQRGDEMLSAMPAGETPGKRTSVTKYNVATRMTA*
Ga0134064_102295601	3300010325	Grasslands Soil	VVIFDNEEDYKKGDEILSAMPAGDTPGQRTSVSKYDVAVRMKS*
Ga0134080_101626173	3300010333	Grasslands Soil	DYQKGDEILNAMPAEDTPGRRTSVKKYDVAMRMKS*
Ga0105239_119800053	3300010375	Corn Rhizosphere	VIIFDNEDDYKKGDEILSAMPAGDTPGQRTSVTKYDVAMRMKD*
Ga0134123_108344282	3300010403	Terrestrial Soil	FFENEDDYEQGDKTLSAMPAGDTPGQRASVTKYNVAIRMTA*
Ga0137392_107951681	3300011269	Vadose Zone Soil	ETEDDYQRGDEALNAMPAGDTPGQRTSVTKYNVATRMTS*
Ga0137364_107432181	3300012198	Vadose Zone Soil	MGGKLVVVFFDDEDAYKRGDEILSSMPTGDTPGQRTSVARYDVAHRQTM*
Ga0137383_109789851	3300012199	Vadose Zone Soil	EAEKSLVVIIFENEDDYRKGDEILSAMPAGDTPGQRTSVTKYNVATRMKS*
Ga0137376_107410322	3300012208	Vadose Zone Soil	SLAIVIFETEDDYKRGDEILNAMPAGDTPGQRTSVTKYNVATRMKS*
Ga0137378_115811311	3300012210	Vadose Zone Soil	NEDDYASADAVLSAMPTDETPGRRTSVAKYNVAMRMKS*
Ga0137377_106097152	3300012211	Vadose Zone Soil	ENEDDYRKGDEILDAMPASDTPGQRTSVTKYNVAHRMSM*
Ga0137366_112532311	3300012354	Vadose Zone Soil	TEDDYKRGDEILDAMPAGDTPGRRASVKKYNVATRMTS*
Ga0137371_112509841	3300012356	Vadose Zone Soil	LVVFFDDEDAYQRGDEILSSMPTGDTPGQRTSVSKYDVAVRMTP*
Ga0137375_108652752	3300012360	Vadose Zone Soil	LVIVFFDSEDDYRKGDEILSAMPAGDTPGQRTSVTKYNVATRMSS*
Ga0137360_116189571	3300012361	Vadose Zone Soil	ETEDDYRQADEILNAMPAGETPGQRTSVNRYDVVFRMKS*
Ga0136630_11634001	3300012529	Polar Desert Sand	DYRRGDEVLSAMPAGETPGQRTSVTKYDVAIRMTP*
Ga0134076_102148652	3300012976	Grasslands Soil	LRKEDDYQRGDEMLSAMPAGETPGKRTSVTKYNVATRMTA*
Ga0120179_10096351	3300013763	Permafrost	ETEDDYKRGDEILSAMPAGDTPGRRASVTKYNVATRMTP*
Ga0134078_105547591	3300014157	Grasslands Soil	EDDYRKGDELLNAMPAGDTPGQRTSVKKYDVAMRMSN*
Ga0075303_10007031	3300014299	Natural And Restored Wetlands	VFFETEDAYARGDEILNAMPTGDTPGQRTSVSKYEVALRMTT*
Ga0163163_119775131	3300014325	Switchgrass Rhizosphere	NEDDYRKGDEILSNMPAGDTPGQRTSVTKYNVAMRMKN*
Ga0182006_11391541	3300015261	Rhizosphere	IFDNEDDYRKGDEILNAMPAGDTPGQRTSVKRYDVAMRMSN*
Ga0134073_102460722	3300015356	Grasslands Soil	VVIIFDNEDDYHAGDEILSAMPAGDTPGQRTSVTKYNVATRMSN*
Ga0132258_122548181	3300015371	Arabidopsis Rhizosphere	EDDYRRGNETLDAMPAGETPGQRTSVSKYQVAFRMTS*
Ga0182036_115186123	3300016270	Soil	QALAIVFFDNEDDYQQGHETLDAMPRGDTPGQRTSVTKYNVAMRVTD
Ga0187785_103326241	3300017947	Tropical Peatland	KSLVVIFFDDHDAYSRGDEILSTMPAGDTPGQRTSVSKYNVAHRQTM
Ga0187776_102537343	3300017966	Tropical Peatland	FDNEDDYNKGDEILSAMPTDDTPGQRTSVSKYNVAMRMKS
Ga0190272_105019211	3300018429	Soil	DYRRGDETLSAMPAGDTPGQRTSVARYDVAVRMAV
Ga0066667_121130091	3300018433	Grasslands Soil	KSTVVIIFENEDDYKKGDQILNDMPAGDTPGQRTSVSKYNVATRMKN
Ga0066662_123393101	3300018468	Grasslands Soil	EDDYRKGDEILSAMPASDTPGTRTSVTKYNVAMRMKR
Ga0173479_107297974	3300019362	Soil	DYKKGDEILSAMPAGDTPGQRTSVSKYDVAMRMKS
Ga0193730_11053071	3300020002	Soil	DYKRGDEILNAMPAGDTPGQRTSVTKYNVATRMKS
Ga0222623_101816522	3300022694	Groundwater Sediment	FDSEDDYRKGDEILSAMPAGDTPGQRTSVTKYNVATRMSS
Ga0222622_109339141	3300022756	Groundwater Sediment	ADYKTGDETLSAMPAGDTPGKRTSVAKYNVAFRMAD
Ga0247672_10625341	3300024187	Soil	NEDDYRKGDEILDSMPASDTPGQRTSVTKYHVAHRMSM
Ga0247667_10671421	3300024290	Soil	VFFDDEDKYQRGDEILSAMPAGDTPGQRTSVSKYNVAMRQSM
Ga0210132_10023261	3300025538	Natural And Restored Wetlands	EKSLGIVFFETEDAYARGDEILNAMPTGDTPGQRTSVSKYEVALRMTT
Ga0207699_102969223	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	DDYRKGDEILSAMPAGDTPGQRTSVTKYNVATRMSS
Ga0207699_104365301	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	DYKKGDEILGGMPSGDTPGTRTSVTKYNVATHMKS
Ga0207693_109099711	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	IVIVDSEDDYRKANEILEAMPGPDTPGSRTSVTKYDVAIRANA
Ga0207660_109714263	3300025917	Corn Rhizosphere	AIVFFENEDDYRLGDETLSAMPAGDTPGQRTSVTKYQVAIRMAD
Ga0207664_113718401	3300025929	Agricultural Soil	RSLAIVIVDSEDDYRKANEILEAMPGPDTPGSRTSVTKYDVAIRANA
Ga0207644_106436282	3300025931	Switchgrass Rhizosphere	AIVFFETEEDYQTGDKILSAMPAADTPGKRTSVTKYNVATRMKS
Ga0207686_106340193	3300025934	Miscanthus Rhizosphere	VIIFENEDDYRKGDEILGNMPASDVPGKRTSVTKYDVATRMKS
Ga0207709_104475732	3300025935	Miscanthus Rhizosphere	IFENEDDYKKGDEILGSMPTPDTPGTRTSVTKYNVAARMKS
Ga0207703_122124121	3300026035	Switchgrass Rhizosphere	FFETEEDYQTGDKILSAMPAADTPGKRTSVTKYNVATRMKS
Ga0209239_13259602	3300026310	Grasslands Soil	EDDYRAGDEILSAMPAGDTPGQRTSVTKYNVATRMSN
Ga0209804_13141251	3300026335	Soil	IFENEDDYRKGDEILDAMPASDTPGQRTSVTKYNVAHRMSM
Ga0209808_12978291	3300026523	Soil	KSLVVIIFENEDDYRAGDEILSAMPAGDTPGQRTSVTKYNVATRMSN
Ga0209156_104943822	3300026547	Soil	DYRKGDEILSAMPAGDTPGQRTSVTKYNVATRMSS
Ga0209474_102265161	3300026550	Soil	FENEDDYRRGDETLNSMPASDTPGQRTSVTKYNVAMRMSD
Ga0209811_101396533	3300027821	Surface Soil	EDDYKKGDEILGSMPSGDTPGNRTSVAKYNVATRMKS
Ga0209811_103583272	3300027821	Surface Soil	EEDYKKGDEILNAMPAGDVPGSRTSVTKYQVATRMKS
Ga0307322_100427231	3300028710	Soil	KSLVIVFFDSEDDYRKGDEILSAMPAGDTPGQRTSVTKYNVATRMSS
Ga0307293_101471304	3300028711	Soil	VIFETEDDYKRGDEILNAMPAGDTPGQRTSVTKYNVATRMKS
Ga0307303_101017522	3300028713	Soil	VVIFFDSEDDYRKGDEILSAMPAGDTPGQRTSVTKYNVATRMSS
Ga0307307_102428851	3300028718	Soil	NEDDYRKGDEVLSAMPTDDTPGQRTSVKRYDVAIHRTM
Ga0307315_102808511	3300028721	Soil	FETEDDYKKGDEILNAMPAGDTPGQRTSVMKYDVAMRMKS
Ga0307282_103573261	3300028784	Soil	DDYKRGDEILNAMPAGDTPGQRTSVTKYNVATRMKS
Ga0307292_101028891	3300028811	Soil	DEDYQRGDAALSAMPAGDTPGQRTSVTKYQVAMRMTD
Ga0318546_112625882	3300031771	Soil	DYRRGHEALDAMPAGETPGQRVDVQKYNVAGRMTA
Ga0310893_102604931	3300031892	Soil	NEDDYRKGDEVLSAMPTDDTPGNRTSVQRYDVAIHQTM
Ga0306926_106774891	3300031954	Soil	FENEDDYRRGHEALDAMPAGETPGQRVDVQKYNVAGRMTA
Ga0308173_100012291	3300032074	Soil	VVFDNEEDYRKGDEILSSMPGPDTPGRRASVSKYDVAVRTST
Ga0310890_110063121	3300032075	Soil	DYAKGDAALNAMPASDTPGQRTSVTKYDVAIRMAD
Ga0314865_150688_2_112	3300033806	Peatland	DDYRKGDAILDAMPGPDTPGRRASVTKYAVAARTAS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092467

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences