Metagenome / Metatranscriptome Family F092454

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F092454
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	66 residues
Representative Sequence	TSPAVRARRRTRAGADVRSTVSPGEVIGYLREHEITLTWNPAAAALQARATQTAKTVTVTAR
Number of Associated Samples	91
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.93 %
% of genes near scaffold ends (potentially truncated)	98.13 %
% of genes from short scaffolds (< 2000 bps)	87.85 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (64.486 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (17.757 % of family members)
Environment Ontology (ENVO)	Unclassified (19.626 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.056 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.11% β-sheet: 11.11% Coil/Unstructured: 77.78%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01546	Peptidase_M20	2.80
PF14690	zf-ISL3	1.87
PF08281	Sigma70_r4_2	1.87
PF00078	RVT_1	1.87
PF00440	TetR_N	1.87
PF10935	DUF2637	1.87
PF07927	HicA_toxin	1.87
PF00561	Abhydrolase_1	0.93
PF00857	Isochorismatase	0.93
PF13358	DDE_3	0.93
PF13546	DDE_5	0.93
PF08450	SGL	0.93
PF01751	Toprim	0.93
PF13565	HTH_32	0.93
PF04542	Sigma70_r2	0.93
PF12680	SnoaL_2	0.93
PF04075	F420H2_quin_red	0.93
PF01979	Amidohydro_1	0.93
PF13091	PLDc_2	0.93
PF13408	Zn_ribbon_recom	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	1.87
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.93
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.93
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.93
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.93
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.93
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.93
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
All Organisms	root	All Organisms	35.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
cellular organisms	root	All Organisms → cellular organisms	35.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	29.91 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	28.04 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.87 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.69 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.87 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	4.67 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.87 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.93 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.93 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.93 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.93 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.93 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	4.67 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.87 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.93 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.93 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.93 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.93 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	4.67 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.87 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	0.93 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.93 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.93 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.93 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.93 %
Kutzneria	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kutzneria	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Streptomyces angustmyceticus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces angustmyceticus	2.80 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.87 %
Mycolicibacterium conceptionense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium conceptionense	0.93 %
Frankia canadensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia canadensis	0.93 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.93 %
unclassified Kutzneria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kutzneria → unclassified Kutzneria	0.93 %
Geodermatophilus obscurus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	0.93 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Streptomyces angustmyceticus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces angustmyceticus	2.80 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.87 %
Kutzneria sp. CA-103260	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kutzneria → unclassified Kutzneria → Kutzneria sp. CA-103260	0.93 %
Mycolicibacterium conceptionense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium conceptionense	0.93 %
Frankia canadensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia canadensis	0.93 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.93 %
Geodermatophilus obscurus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	0.93 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573001\|GZR05M101DW8NA	Not Available	516	Open in IMG/M
3300002245\|JGIcombinedJ26739_100597858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces angustmyceticus	980	Open in IMG/M
3300003505\|JGIcombinedJ51221_10379239	Not Available	574	Open in IMG/M
3300005181\|Ga0066678_10829677	Not Available	609	Open in IMG/M
3300005435\|Ga0070714_100964760	Not Available	829	Open in IMG/M
3300005437\|Ga0070710_10424772	Not Available	896	Open in IMG/M
3300005471\|Ga0070698_100752213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	918	Open in IMG/M
3300005471\|Ga0070698_100948455	Not Available	807	Open in IMG/M
3300005536\|Ga0070697_100043694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3629	Open in IMG/M
3300005536\|Ga0070697_102045277	Not Available	513	Open in IMG/M
3300005591\|Ga0070761_10455142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	786	Open in IMG/M
3300006175\|Ga0070712_101828097	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300006176\|Ga0070765_101038306	Not Available	775	Open in IMG/M
3300006806\|Ga0079220_10963066	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	672	Open in IMG/M
3300009523\|Ga0116221_1283743	Not Available	716	Open in IMG/M
3300009525\|Ga0116220_10535295	Not Available	534	Open in IMG/M
3300009624\|Ga0116105_1201371	Not Available	549	Open in IMG/M
3300009672\|Ga0116215_1265264	Not Available	749	Open in IMG/M
3300009700\|Ga0116217_10568139	Not Available	708	Open in IMG/M
3300009759\|Ga0116101_1133760	Not Available	598	Open in IMG/M
3300010325\|Ga0134064_10341390	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	582	Open in IMG/M
3300010336\|Ga0134071_10704095	Not Available	535	Open in IMG/M
3300010341\|Ga0074045_11008969	Not Available	523	Open in IMG/M
3300010876\|Ga0126361_11257738	Not Available	519	Open in IMG/M
3300010877\|Ga0126356_11089718	Not Available	537	Open in IMG/M
3300012200\|Ga0137382_10801948	Not Available	677	Open in IMG/M
3300012201\|Ga0137365_10609558	Not Available	800	Open in IMG/M
3300012209\|Ga0137379_11045913	Not Available	722	Open in IMG/M
3300012359\|Ga0137385_10860129	Not Available	751	Open in IMG/M
3300012359\|Ga0137385_11115380	Not Available	649	Open in IMG/M
3300012930\|Ga0137407_11509321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	639	Open in IMG/M
3300012944\|Ga0137410_11092783	Not Available	683	Open in IMG/M
3300012987\|Ga0164307_10921136	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300016341\|Ga0182035_11321903	Not Available	646	Open in IMG/M
3300017822\|Ga0187802_10461840	Not Available	503	Open in IMG/M
3300017933\|Ga0187801_10028629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia canadensis	1943	Open in IMG/M
3300017942\|Ga0187808_10293354	Not Available	732	Open in IMG/M
3300017942\|Ga0187808_10408354	Not Available	621	Open in IMG/M
3300017943\|Ga0187819_10677038	Not Available	582	Open in IMG/M
3300017946\|Ga0187879_10074515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1967	Open in IMG/M
3300017946\|Ga0187879_10352134	Not Available	817	Open in IMG/M
3300017948\|Ga0187847_10327218	Not Available	838	Open in IMG/M
3300017955\|Ga0187817_11089986	Not Available	512	Open in IMG/M
3300017959\|Ga0187779_10825435	Not Available	634	Open in IMG/M
3300017975\|Ga0187782_10696060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	783	Open in IMG/M
3300017975\|Ga0187782_11071960	Not Available	628	Open in IMG/M
3300018030\|Ga0187869_10151989	Not Available	1148	Open in IMG/M
3300018037\|Ga0187883_10329712	Not Available	780	Open in IMG/M
3300018038\|Ga0187855_10580128	Not Available	653	Open in IMG/M
3300018042\|Ga0187871_10048406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces angustmyceticus	2569	Open in IMG/M
3300018046\|Ga0187851_10070352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2225	Open in IMG/M
3300018086\|Ga0187769_10896400	Not Available	671	Open in IMG/M
3300018086\|Ga0187769_11537213	Not Available	503	Open in IMG/M
3300021178\|Ga0210408_10015109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6267	Open in IMG/M
3300021180\|Ga0210396_11380314	Not Available	583	Open in IMG/M
3300021401\|Ga0210393_10109365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2205	Open in IMG/M
3300021401\|Ga0210393_10814054	Not Available	760	Open in IMG/M
3300021433\|Ga0210391_11535735	Not Available	510	Open in IMG/M
3300021559\|Ga0210409_10228886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1687	Open in IMG/M
3300022840\|Ga0224549_1005559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces angustmyceticus	1933	Open in IMG/M
3300025910\|Ga0207684_10242603	Not Available	1554	Open in IMG/M
3300027064\|Ga0208724_1036425	Not Available	509	Open in IMG/M
3300027090\|Ga0208604_1009228	Not Available	937	Open in IMG/M
3300027110\|Ga0208488_1056652	Not Available	669	Open in IMG/M
3300027703\|Ga0207862_1005018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	3886	Open in IMG/M
3300027775\|Ga0209177_10450330	Not Available	527	Open in IMG/M
3300027905\|Ga0209415_10693975	Not Available	731	Open in IMG/M
3300028759\|Ga0302224_10422794	Not Available	542	Open in IMG/M
3300028789\|Ga0302232_10077844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1716	Open in IMG/M
3300028879\|Ga0302229_10199875	Not Available	914	Open in IMG/M
3300029943\|Ga0311340_10204838	All Organisms → cellular organisms → Bacteria	1982	Open in IMG/M
3300029943\|Ga0311340_11010811	Not Available	682	Open in IMG/M
3300029999\|Ga0311339_10462991	All Organisms → cellular organisms → Bacteria	1301	Open in IMG/M
3300030007\|Ga0311338_10134858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2977	Open in IMG/M
3300030007\|Ga0311338_11124502	Not Available	751	Open in IMG/M
3300030013\|Ga0302178_10096187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1530	Open in IMG/M
3300030043\|Ga0302306_10247128	Not Available	685	Open in IMG/M
3300030058\|Ga0302179_10462828	Not Available	557	Open in IMG/M
3300030503\|Ga0311370_10263385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium conceptionense	2261	Open in IMG/M
3300030509\|Ga0302183_10062693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1471	Open in IMG/M
3300030524\|Ga0311357_10931938	Not Available	769	Open in IMG/M
3300030617\|Ga0311356_10286242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1656	Open in IMG/M
3300030739\|Ga0302311_10319596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1119	Open in IMG/M
3300030906\|Ga0302314_10492629	Not Available	1320	Open in IMG/M
3300031233\|Ga0302307_10635211	Not Available	537	Open in IMG/M
3300031525\|Ga0302326_10356731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2295	Open in IMG/M
3300031543\|Ga0318516_10620301	Not Available	617	Open in IMG/M
3300031549\|Ga0318571_10255480	Not Available	645	Open in IMG/M
3300031668\|Ga0318542_10373737	Not Available	735	Open in IMG/M
3300031708\|Ga0310686_103261552	Not Available	605	Open in IMG/M
3300031708\|Ga0310686_112923254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3390	Open in IMG/M
3300031719\|Ga0306917_11535061	Not Available	512	Open in IMG/M
3300031845\|Ga0318511_10197204	Not Available	894	Open in IMG/M
3300032261\|Ga0306920_100873970	Not Available	1316	Open in IMG/M
3300032783\|Ga0335079_10541138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1237	Open in IMG/M
3300032783\|Ga0335079_10961426	Not Available	874	Open in IMG/M
3300032805\|Ga0335078_11725464	Not Available	685	Open in IMG/M
3300032828\|Ga0335080_10385312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1507	Open in IMG/M
3300032892\|Ga0335081_10148962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3350	Open in IMG/M
3300032892\|Ga0335081_11342715	Not Available	803	Open in IMG/M
3300032896\|Ga0335075_10196227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2423	Open in IMG/M
3300032896\|Ga0335075_10347014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1618	Open in IMG/M
3300032954\|Ga0335083_10133760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2372	Open in IMG/M
3300032954\|Ga0335083_10285947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1456	Open in IMG/M
3300033158\|Ga0335077_11557894	Not Available	630	Open in IMG/M
3300033158\|Ga0335077_11714198	Not Available	593	Open in IMG/M
3300033289\|Ga0310914_10377759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kutzneria → unclassified Kutzneria → Kutzneria sp. CA-103260	1282	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.05%
Aquatic	Environmental → Aquatic	14.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.36%
Peat	Environmental → Terrestrial → Peat	18.69%
Freshwater	Environmental → Aquatic → Freshwater	14.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.58%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	18.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	16.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.95%
Loam	Environmental → Terrestrial → Soil → Loam	14.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.69%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	18.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	16.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.08%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.48%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.61%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	17.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	11.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.28%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	7.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.54%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.61%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.67%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.87%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.87%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573001	Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022840	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027064	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes)	Environmental	Open in IMG/M
3300027090	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016 (SPAdes)	Environmental	Open in IMG/M
3300027110	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FD2_03520900	2189573001	Grass Soil	SGAVRARRRSRAGADVRGMVSPGEVIGYLREHEITLTWNPATEVLQARAAETAKTVTVKA
JGIcombinedJ26739_1005978581	3300002245	Forest Soil	TNPAVRARRRTRAGADLRSTASPAEAIAYLCEHYITLTWNPAAATLQARATQTAKTATVTAR*
JGIcombinedJ51221_103792391	3300003505	Forest Soil	RAGADVTGTVSPGEVIGYLREHEITLTWNPAAGALQARVPETAKTVTVKAS*
Ga0066678_108296771	3300005181	Soil	IREDKLLPHLPALHLLLTSPNVRARRRTRAGTDARSTCRLSAGEVIGYLREHEIALTWDPAAASLQARATQTAKTVTVKTN*
Ga0070714_1009647602	3300005435	Agricultural Soil	LLLTTPATRVRHRTRAGADVRPAVSPDEVLTYLREHGITLTWDPAAAALQARATGDAKPVTVKAS*
Ga0070710_104247721	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LHLLLTAPAVRARRRTRAGTDVRPAVSPEQVIGYLREHEITLTWDPAAAAVQARATETAKTATVKPN*
Ga0070698_1007522131	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	PALHLILATPAGRARRRTRAGADVTGGASPGEVIGYLREHEITLTWDPAAAALQARATQTAETVTVKTS*
Ga0070698_1009484552	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	SPAVRARRRTRAGADITGTVSPGAVIGYLRENEITLTWNPAAAALQARATQTAKTVTVTAR*
Ga0070697_1000436945	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	TPATRARHRTRAGADVTGTVSPGEVIGYLREHEITLTWNPAADALQARVPETAKTVTVKAS*
Ga0070697_1020452771	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LLTTPAVRARRRTRAGADVTGTASPGEVIGYLREHEITLTWNPAAATVQARVTQTAKTVTVKAS*
Ga0070761_104551422	3300005591	Soil	VPHLAALHLLLTSPAVRARRRTRSGADVRSTASPGQVIGYLREHEITLTWDPAATAVQARATETAKTVTVKAS*
Ga0070712_1018280971	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RIRCRTRAGADVKPALSPGEVIGYLREHEITLTWNPAAAALQARAAETAKAVTVKAS*
Ga0070765_1010383062	3300006176	Soil	SCSHKGSRRRTRVGADVRSTVSPAEVIRYLREHEITLTWNPAAAALQARATQTAKTVTVTAR*
Ga0079220_109630661	3300006806	Agricultural Soil	SPATRARRRTRGGSDVRAAVNPGEVIGYLREHEITLTWNPAAATVQAPATRPARPSP*
Ga0116221_12837431	3300009523	Peatlands Soil	ARRRTRAGADFRDTASPGGVIAYLREHEITLTWNPAAATVQARVAQTAKTVAVKAS*
Ga0116220_105352951	3300009525	Peatlands Soil	PHLPALHLLLTTPAVRARRRTRAGADVTGTASPGEVIGYLREHEITLTWNPAAATVQARVAQTAKTVAVKAS*
Ga0116105_12013711	3300009624	Peatland	LPHLPALHLFLTTPATRARRRTRAGAHVTGTVSPGEVIGYLREHEITLTWNPAANALQARIPETAKTVTVKAS*
Ga0116215_12652641	3300009672	Peatlands Soil	LPHLPALHLLLTTPAVRARRRTRAGADVTGTASPGEVIGYLREHEITLTWNPAAATVQARVAQTAKTVAVKAS*
Ga0116217_105681391	3300009700	Peatlands Soil	TPAVRARRRTRAGADVTGTASPGEVIGYLREHEITLTWNPAAAALQARTPETAKTVTVKTN*
Ga0116101_11337601	3300009759	Peatland	LHLLLTSPAKRTRRRIRAGADVRSTVSPAGVVGYLREHEITLTWNPGAAALQARATWTAKTVTVKAS*
Ga0134064_103413901	3300010325	Grasslands Soil	KLLPHLPALHRLLTSPAVRARRRTRAGADVRSTASPGEVIGYMHEHEITLTWNPAAAHLLAQAHSSVDISNACLSESF*
Ga0134071_107040951	3300010336	Grasslands Soil	ASARSAEGVTSPAAVRARRRTRAGADVRSTVSPGEVIGYLREHEITLTWNPAAAALQARATQTAKTVTVTAR*
Ga0074045_110089691	3300010341	Bog Forest Soil	RAGTDVRSAVSPGEVICYLREQEMTLTWAPAAAALQARSTETAKTVTVKTN*
Ga0126361_112577381	3300010876	Boreal Forest Soil	LTSPATRARRRTRAGADVRSTVSPGEVVGYLREHEITLSWNPGATALQARATQTAKTVTVKAS*
Ga0126356_110897181	3300010877	Boreal Forest Soil	PKNTYNREDKLLPHLAALHLFLTTPATRARRRTRAGADVTGTVSPGEVIGYLREHEITLTWNPAADALQARVPETAKTVTVKAS*
Ga0137382_108019481	3300012200	Vadose Zone Soil	LLNSRAVRARRRTRAGADIRGTVSPGEVIGYLREHEITLTWNPAAAALQSRAAETAKDVTVKAS*
Ga0137365_106095581	3300012201	Vadose Zone Soil	TRAGADVRGTASPGKVIRYLREHEITLTWDPATKALQARATETAKTVTVTTR*
Ga0137379_110459131	3300012209	Vadose Zone Soil	PHLPALHLMLTTPAVRARRRTRAGTDVRSAVSPGEVIGYLREHEITLTWHPASAALQARGTETAKTITVKAS*
Ga0137385_108601292	3300012359	Vadose Zone Soil	LLLTSGAVRARRRTRAGVDVKGTVSPGEVLGYLRERQITLTWNPAAATLQARATETAKTVTLKAS*
Ga0137385_111153801	3300012359	Vadose Zone Soil	ARRRTRAGADVRDTASPGEVIAYLREHEITLTWNPAAATVQARVTQTAKTVTVKAS*
Ga0137407_115093212	3300012930	Vadose Zone Soil	PHLAALHLLLTSPAVRPRRRTRAGADVRSTMSPAEVIGYLREHEITLTWNPAATALQARATQTAKTVTVTAR*
Ga0137410_110927832	3300012944	Vadose Zone Soil	RRYSGLQARRGEPGKLLLYLPALHLLLTNPATRVRRRTRAGADVRPAASPGEVIAYLREHGITLTWDPAAAALQARATGTAKTVTVKAS*
Ga0164307_109211361	3300012987	Soil	EDKLLPHLPALHLLLTSPVTRARRRTRAGADVRADVRAGLSPGEVIGYLREHEITLTWNPAAAALQARAAETAKAVIVKAS*
Ga0182035_113219032	3300016341	Soil	DKLLPHLPALHLLLTSPAVRARRRTRSGADARSTVSPGEVIGYLREHEITLTWNPASAALQARATQTAKAITVTAR
Ga0187802_104618401	3300017822	Freshwater Sediment	PHLPALQQLLTSPAARGRRRTRAGTDVRDTASHCEVIAYLRAREITLTGNPAAAALQARATQTAKTVTVTAR
Ga0187801_100286291	3300017933	Freshwater Sediment	EDKLLSHLPALHLLLTTPAVRARRRTRAGADVTGAASPGEVIGYLREHEIALTWNPASAALQARGTETAKTVTIKAT
Ga0187808_102933542	3300017942	Freshwater Sediment	PALHLLLTSPAVRARRRTQAGADVRSTVSPGEVIGYLREHEITLTWNPAAAALQARTTQTAKTVTVTAR
Ga0187808_104083542	3300017942	Freshwater Sediment	PHLPALHLFLTTPATRARRRTRAGADVTGTTSPGEVIGYLREHETTLTWNPAADALQARVPETAKTVTVKASY
Ga0187819_106770381	3300017943	Freshwater Sediment	RRTRAGADVTGTVSPGEVIGYLREHEITLTWNPAADALQARVPETAKTVTVKAS
Ga0187879_100745151	3300017946	Peatland	TRAGADVRSTVTPGEVVGYLREHKITLTWNPGAAALQARATGTAKTVTVKAS
Ga0187879_103521342	3300017946	Peatland	LPHLPALHLLLSTPAVRARRRTRAGADVTGTASPGEVIAYLREHEITLSRNPTAAALQARATQTAKTVTVTAR
Ga0187847_103272182	3300017948	Peatland	CRTRAGADVTGAASPGEVIAYLREHEITLTWNPASAALQARGTQTAKTVTLKAS
Ga0187817_110899861	3300017955	Freshwater Sediment	LPALHLLLTTPAVRARRRTRAGADVTGTANPGEMIGYLREHEITLTWNPAAAALQARTTQTAKTVTVTAR
Ga0187779_108254352	3300017959	Tropical Peatland	RRRTRAGADVTGTASPGEVIGYLREHEITLTWNPAAAALQAHSTGTAKTVTIKAS
Ga0187782_106960602	3300017975	Tropical Peatland	TSPAVRARRRTRAGADVKGTVSPGEVIGYLREHEITLTWDPAAAALQARGPETAKTVTVKAN
Ga0187782_110719601	3300017975	Tropical Peatland	LPHLPALHLLLTTPATRARRRTRAGADVTGAASPGEVIAYIREHEITLTWNPTSAALQARGTQTAKTVTVTVR
Ga0187869_101519893	3300018030	Peatland	ARRRTRAGAHVTGTVSPGEVIGYLREHEITLTWNPAANALQARIPETAKTVTVKAS
Ga0187883_103297121	3300018037	Peatland	RRRTRAGAHVTGTVSPGEVIGYLREHEITLTWNPAANALQARIPETAKTVTVKAS
Ga0187855_105801281	3300018038	Peatland	LPHLPALHLLLTTPAVRARRRTRAGTDVTSAASPDEVIGYLRENEITLTWNPAVAALQAHATETAKTVTVKAS
Ga0187871_100484061	3300018042	Peatland	ATRARRRTRAGAHVTGTVSPGEVIGYLREHEITLTWNPAADALQARIPETAKTVTVKAS
Ga0187851_100703524	3300018046	Peatland	TRAGADVTGTVSPGEVIGYLRQHEITLTWNPAAAALQARGPQIAKTATVKTS
Ga0187769_108964001	3300018086	Tropical Peatland	TRAGADIRSAVSAGEVIGYLREHEIALAWDPAAAALHARGPETAKTVTVGTR
Ga0187769_115372131	3300018086	Tropical Peatland	ALHLLLTSPAVRARRRTRAGADVRSTMSPGEVIGYLREHEITLTWDSAATALQARATQTAKTVIVTAR
Ga0210408_100151091	3300021178	Soil	LLPHLPALHLLLTTPAVRARRRTRAGADVTGTASPGEVIGYLREHEITLTWNPAAATVQARVTQTAKTVTVKAS
Ga0210396_113803141	3300021180	Soil	IREGKLLPHLPALHLFLTTSAMRARRRTRAGADVTGMVSPGEVIGYLREHKITLTWNPAADALQARIPETAKTVTVKAS
Ga0210393_101093651	3300021401	Soil	KLLPHLPALHLLLTTPATRARRRTRAGTDVTGAASPGEVVVYLREHQIILTWNPASAALQTHGTQTAKTVTITTS
Ga0210393_108140542	3300021401	Soil	PAVRARRRTRAGVEVTGAASPGEVIGYLREHEIALTWNPAAAALQVRNPQTAKTATVKTS
Ga0210391_115357351	3300021433	Soil	PALHLLLTSPAVRARRRTRAGADVTAATSPGEVIGYLREHEITLTWNPAAATLQARAPQTAKTATVKTS
Ga0210409_102288861	3300021559	Soil	PALHLLLTSRAVRARRRTRAGADISGTVSPGEVIGYLREHEITLTWNPAAAALRARAAETAKTVTVKAS
Ga0224549_10055591	3300022840	Soil	LATPATRARRRTRAGADVTGTVSPAEVIGYLREHEITLTWNPAAATVQARATQTDKTVTVKTN
Ga0207684_102426033	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LTTPATRARHRTRAGADVTGTVSPGEVIGYLREHEITLTWNPAADALQARVPETAKTVTVKAS
Ga0208724_10364252	3300027064	Forest Soil	TETERRPAGASTGQPSPRARRRTRAGADVTATVSPGEVIGYLRQHEITLTWNPAAAALQARATQTAKTVTVTAR
Ga0208604_10092281	3300027090	Forest Soil	LLTTPAVRARRRTRAGADVTGAANPGEVIGYLREHEITLTWNPASAALQARGTETARTVTIKAS
Ga0208488_10566522	3300027110	Forest Soil	HLPALHLVLATPATRARRRTRAGTDVTGTASPVEVIAYLREHEITLTWNPASAALQARGAETAKTVTVKAS
Ga0207862_10050181	3300027703	Tropical Forest Soil	PALHLLLTTSAVHARRRTRAGTDVRATASPGKVIGYLRKHEITLTWDPAAAALQARATQTAKTVTVKTN
Ga0209177_104503301	3300027775	Agricultural Soil	DKLLPHLPALHLLLTNPVVRARRRTRAGVDLRSTVSPGEVIGYLREHEITLTWNPAATALQARATQTAKTVTVTAR
Ga0209415_106939751	3300027905	Peatlands Soil	HLPALHLLLTTPAVRARRRTRAGADVTGTASPGEVIGYLREHEITLTWNPAAATVQARVAQTAKTVAVKAS
Ga0302224_104227941	3300028759	Palsa	RLLSSPATRGRRRTRAGADVRTTVSPDEVIAYLREHRISLMWNPADATLQARAPQTATTATVTAR
Ga0302232_100778441	3300028789	Palsa	RTRAGADVRTTVSPGEVIAYLREHRISLMWNPADATLQARAPQTATTATVTAR
Ga0302229_101998751	3300028879	Palsa	RAPRRTRAGTDVRVAASPGEVIGFLRAQEITLSWNPPAAALQARSTETAKTVTVRTN
Ga0311340_102048381	3300029943	Palsa	RGRRRTRAGADVRTTVSPGEVIAYLREHRISLMWNPADATLQARAPKTAKTATVTAR
Ga0311340_110108111	3300029943	Palsa	PAVHVRRRTRSGADVRSTASPGEVIGYLREHEITLTWDPAAAAVQARATETAKTVTVKAS
Ga0311339_104629914	3300029999	Palsa	EDRLLLHLPALHLLLSSPATRGRRRTRAGADVRTTVSPGEVIAYLREHRISLMWNPADATLQARAPKTAKTATVTAR
Ga0311338_101348585	3300030007	Palsa	VREDKIVPHLAALHLLLTSPAVRARRRTRSGADVRSTASPGQVIGYLREHEITLTWDPAAAAVQARATETAKTVTVKAS
Ga0311338_111245021	3300030007	Palsa	ATPATRARRRTRAGADVPGTVSPAEVIGYLREHEITLTWNPAADALQARVPETAKTVTVKAS
Ga0302178_100961871	3300030013	Palsa	PHLAALHLLLTSPAVRARRRTRSGADVRSTASPGQVIGYLREHEITLTWDPAAAAVQARATETAKTVTVKAS
Ga0302306_102471282	3300030043	Palsa	TYIREDRLLLHLPALHRLLSSPATRGRRRTRAGADVRTTVSPDEVIAYLREHRISLMWNPADATLQARAPQTATTATVTAR
Ga0302179_104628281	3300030058	Palsa	PATRARRRTRAGADVTGTVSPAEVIGYLREHEITLTWNPAADALQARVPETAKTVTVKAS
Ga0311370_102633853	3300030503	Palsa	ALHLLLTSPAVRARRRTRAGTDVRSTVSPAEVIGYLREHEITLTWNPAAAALQAPATQTAKTVTVTAR
Ga0302183_100626933	3300030509	Palsa	DVRTTVSPDGVIAYLREHRISLMWNPADATLQARAPQTATTATVTAR
Ga0311357_109319381	3300030524	Palsa	DKIVPHLAALHLLLTSPAVRARRRTRSGADVRSTASPSEVIGYLREHEITLTWDPAAAGVQARATETAKTVTVKAS
Ga0311356_102862422	3300030617	Palsa	TPATRARRRTRAGADVTGTVSPAEVIGYLREHEITLTWNPAADALQARVPETAKTVTVKA
Ga0302311_103195961	3300030739	Palsa	LPALHRLLSSPATRGRRRTRAGADVRTTVSPDEVIAYLREHRISLMWNPADATLQARAPQTATTATVTAR
Ga0302314_104926292	3300030906	Palsa	LPRLPALHLLLTSPATRARRRTRAGADVRSTVSPGEVIGYLREHEITLTWNPGAAALQARATGTAKTVTVKAS
Ga0302307_106352111	3300031233	Palsa	RRRTRSGADVRSTASPGEVIRYLREHEITLTWDPATSAVQARATETAKTVTVKAS
Ga0302326_103567311	3300031525	Palsa	LHLFLATPATRARRRTRAGADVTGTVSPAEVIGYLREHEITLTWNPAADALQARVPETAKTVTVKAS
Ga0318516_106203011	3300031543	Soil	DKLLPHLPALLTTPAVRARRRTRAGADVTGTASPGEAIGYLREHEITFTWNPAAATVEARTTHTDKTVTVNTN
Ga0318571_102554801	3300031549	Soil	PHLPALHLLLTSPAVRARRRTRSGADARSTVSPGEVIGYLREHEITLTWNPASAALQARATQTAKAITVTAR
Ga0318542_103737371	3300031668	Soil	HLPALHLLLTSPARRARRRTRGGTNVRATASPGEVIGYLREHEITLTWNPAAAALQARAPHTAKTVTIMTR
Ga0310686_1032615521	3300031708	Soil	DKLLPHLPALHLLLTSPATRTRRRTRAGADVRDTVSPDEVIGYLREHDITLTWDPAAAVLQACATQTAKTVTVKAG
Ga0310686_1129232541	3300031708	Soil	VRARRRIRAGTDVTGSASPDEVIAYLREHEITITWNPATAALQARATQTAKTIIIKAS
Ga0306917_115350611	3300031719	Soil	RTRAGADVRSTMSPAEVIGYLREHQITLTWDPAAAALQARATKTAKTVTVGTR
Ga0318511_101972041	3300031845	Soil	SWRRRRTRSGADARSTVSPGEVIGYLREHEITLTWNPASAALQARATQTAKAITVTAR
Ga0306920_1008739702	3300032261	Soil	LPHLPALHLLLTTSAVHARRRTRAGTDVRATASPGEVIEYLREHEIALTWDPAAATIQARGTQTAKTVTVKTH
Ga0335079_105411381	3300032783	Soil	RTRAGADVRTTVSPGEVIAYLREHRIGLMWNPADATLQARAPQIAKTATVTAR
Ga0335079_109614262	3300032783	Soil	LHLLLTTPAVRARRRTRAGADVTGAASPGEVIGYLREHEITLTWNPASAALQARGTETAKTVTIKAS
Ga0335078_117254641	3300032805	Soil	HLPALHLLLTTPAVRARRRTRAGADVTGAASPGEVIGYLREHEITLTWNPASAALQARGTETAKTVTIKAS
Ga0335080_103853121	3300032828	Soil	EDKLLLHLPALHLLLTTPAVRARRRTRAGADVTGAANPGEVIGYLREHEITLTWNPAAAALQARATETAKTVTIKAS
Ga0335081_101489621	3300032892	Soil	KLLPHLPALHLLLTSPATRARRRTRAGADVRSTVGPGEVIGYLREHQITLTWDPAAAALQARATKTAKTVTVGTR
Ga0335081_113427151	3300032892	Soil	RAGTDVRDTASPGKVIAYLREHEITITWNPAAAALQARATETAKTVTVKAG
Ga0335075_101962271	3300032896	Soil	TPAVRARRRTRAGADVTGTVSPGEVIGYLREHEITLTWNPASAALQARGTGTAKTVTIKA
Ga0335075_103470141	3300032896	Soil	RARRRTRAGADVTGAANPGEVIGYLREHQITLTWDPASAALQARGIETAKTITIKAS
Ga0335083_101337605	3300032954	Soil	LPALHLLLTNPVVRARRRTRAGVDLRSTVSPGEVIGYLREHEITLTWNPAATALQARATQTAKTVTVTAR
Ga0335083_102859474	3300032954	Soil	TSPAVRARRRTRAGADVRSTVSPGEVIGYLREHEITLTWNPAAAALQARATQTAKTVTVTAR
Ga0335077_115578941	3300033158	Soil	PALHLLLTTPAVRARRRTRAGADVTGAANPSEVIGYLREHEITLTWNPASAALHARDTETAKTVTIKAS
Ga0335077_117141981	3300033158	Soil	ARARRRTRAGADVRATVNPGEAIGYLREHEITLTWDPAAAALQARAPETAKTVTVKAN
Ga0310914_103777592	3300033289	Soil	LHLLLTTPAARARRRTRGGTDVRATASPGEVIGYLREHEIALTWNPAATALQARTTQAAKTVTITTS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092454

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences