Metagenome / Metatranscriptome Family F092372

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092372
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	126 residues
Representative Sequence	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGR
Number of Associated Samples	103
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.17 %
% of genes near scaffold ends (potentially truncated)	96.26 %
% of genes from short scaffolds (< 2000 bps)	75.70 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.981 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil (10.280 % of family members)
Environment Ontology (ENVO)	Unclassified (40.187 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.860 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 39.20% β-sheet: 0.00% Coil/Unstructured: 60.80%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF11946	DUF3463	47.66
PF02401	LYTB	7.48
PF02780	Transketolase_C	2.80
PF13292	DXP_synthase_N	1.87
PF03176	MMPL	1.87
PF13561	adh_short_C2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0761	4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH	Lipid transport and metabolism [I]	14.95
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	1.87
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	1.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.98 %
Unclassified	root	N/A	14.02 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.98 %
Unclassified	root	N/A	14.02 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.98 %
Unclassified	root	N/A	14.02 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	85.05 %
Unclassified	root	N/A	14.02 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	40.19 %
Unclassified	root	N/A	14.02 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7.48 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	40.19 %
Unclassified	root	N/A	14.02 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6.54 %
Aeromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales	0.93 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.93 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	20.56 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	14.02 %
Unclassified	root	N/A	14.02 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	6.54 %
Aeromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae	0.93 %
Chromobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	20.56 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	14.02 %
Unclassified	root	N/A	14.02 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	3.74 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	2.80 %
Pseudogulbenkiania	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Pseudogulbenkiania	0.93 %
Aeromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	20.56 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	14.02 %
Unclassified	root	N/A	14.02 %
pseudomallei group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group	3.74 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	2.80 %
Aeromonas salmonicida	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas salmonicida	0.93 %
Pseudogulbenkiania ferrooxidans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Pseudogulbenkiania → Pseudogulbenkiania ferrooxidans	0.93 %

Name	Rank	Taxonomy	Distribution
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	20.56 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	14.02 %
Unclassified	root	N/A	14.02 %
Burkholderia pseudomallei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei	3.74 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	2.80 %
Aeromonas salmonicida	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas salmonicida	0.93 %
Pseudogulbenkiania ferrooxidans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Pseudogulbenkiania → Pseudogulbenkiania ferrooxidans	0.93 %

Name	Rank	Taxonomy	Distribution
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	20.56 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	14.02 %
Unclassified	root	N/A	14.02 %
Burkholderia pseudomallei 1710b	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei → Burkholderia pseudomallei 1710b	3.74 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	2.80 %
Aeromonas salmonicida	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas salmonicida	0.93 %
Pseudogulbenkiania ferrooxidans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Pseudogulbenkiania → Pseudogulbenkiania ferrooxidans	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001989\|JGI24739J22299_10233827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	538	Open in IMG/M
3300004156\|Ga0062589_101928823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas salmonicida	597	Open in IMG/M
3300004479\|Ga0062595_100175999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1287	Open in IMG/M
3300004479\|Ga0062595_102177696	Not Available	542	Open in IMG/M
3300004480\|Ga0062592_102039055	Not Available	568	Open in IMG/M
3300005159\|Ga0066808_1009536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	857	Open in IMG/M
3300005162\|Ga0066814_10121647	Not Available	506	Open in IMG/M
3300005276\|Ga0065717_1003618	All Organisms → cellular organisms → Bacteria → Proteobacteria	1222	Open in IMG/M
3300005345\|Ga0070692_10020835	All Organisms → cellular organisms → Bacteria → Proteobacteria	3183	Open in IMG/M
3300005347\|Ga0070668_100075934	All Organisms → cellular organisms → Bacteria → Proteobacteria	2624	Open in IMG/M
3300005353\|Ga0070669_100042244	All Organisms → cellular organisms → Bacteria → Proteobacteria	3318	Open in IMG/M
3300005356\|Ga0070674_102215834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	502	Open in IMG/M
3300005364\|Ga0070673_101494615	All Organisms → cellular organisms → Bacteria → Proteobacteria	637	Open in IMG/M
3300005406\|Ga0070703_10286271	All Organisms → cellular organisms → Bacteria → Proteobacteria	682	Open in IMG/M
3300005455\|Ga0070663_100634246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	902	Open in IMG/M
3300005459\|Ga0068867_100151714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	1821	Open in IMG/M
3300005526\|Ga0073909_10044062	All Organisms → cellular organisms → Bacteria → Proteobacteria	1593	Open in IMG/M
3300005543\|Ga0070672_100567114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	987	Open in IMG/M
3300005547\|Ga0070693_101512487	Not Available	525	Open in IMG/M
3300005549\|Ga0070704_100040768	All Organisms → cellular organisms → Bacteria → Proteobacteria	3199	Open in IMG/M
3300005564\|Ga0070664_100833358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	863	Open in IMG/M
3300005578\|Ga0068854_100076027	All Organisms → cellular organisms → Bacteria → Proteobacteria	2467	Open in IMG/M
3300005616\|Ga0068852_101179304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	787	Open in IMG/M
3300005764\|Ga0066903_108932465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Pseudogulbenkiania → Pseudogulbenkiania ferrooxidans	508	Open in IMG/M
3300006058\|Ga0075432_10086267	All Organisms → cellular organisms → Bacteria → Proteobacteria	1144	Open in IMG/M
3300006178\|Ga0075367_10048028	All Organisms → cellular organisms → Bacteria → Proteobacteria	2512	Open in IMG/M
3300006577\|Ga0074050_11493712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	546	Open in IMG/M
3300006579\|Ga0074054_12178676	All Organisms → cellular organisms → Bacteria → Proteobacteria	829	Open in IMG/M
3300006606\|Ga0074062_12916444	All Organisms → cellular organisms → Bacteria → Proteobacteria	801	Open in IMG/M
3300006881\|Ga0068865_100157565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	1729	Open in IMG/M
3300006904\|Ga0075424_101020790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei → Burkholderia pseudomallei 1710b	882	Open in IMG/M
3300006953\|Ga0074063_13513064	All Organisms → cellular organisms → Bacteria → Proteobacteria	904	Open in IMG/M
3300006954\|Ga0079219_10816499	All Organisms → cellular organisms → Bacteria → Proteobacteria	736	Open in IMG/M
3300009094\|Ga0111539_13290326	Not Available	520	Open in IMG/M
3300009098\|Ga0105245_10744670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1015	Open in IMG/M
3300009551\|Ga0105238_11099352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	818	Open in IMG/M
3300009551\|Ga0105238_12053864	All Organisms → cellular organisms → Bacteria → Proteobacteria	605	Open in IMG/M
3300010371\|Ga0134125_10388687	Not Available	1548	Open in IMG/M
3300010396\|Ga0134126_12839478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	525	Open in IMG/M
3300010399\|Ga0134127_10043467	Not Available	3676	Open in IMG/M
3300010399\|Ga0134127_10461700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei → Burkholderia pseudomallei 1710b	1272	Open in IMG/M
3300010401\|Ga0134121_10170775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	1865	Open in IMG/M
3300011107\|Ga0151490_1509114	All Organisms → cellular organisms → Bacteria → Proteobacteria	626	Open in IMG/M
3300011119\|Ga0105246_12155825	Not Available	541	Open in IMG/M
3300012474\|Ga0157356_1010336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	631	Open in IMG/M
3300012496\|Ga0157353_1017412	All Organisms → cellular organisms → Bacteria → Proteobacteria	662	Open in IMG/M
3300012502\|Ga0157347_1055457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	556	Open in IMG/M
3300012507\|Ga0157342_1003465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei → Burkholderia pseudomallei 1710b	1352	Open in IMG/M
3300012509\|Ga0157334_1064401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	537	Open in IMG/M
3300012893\|Ga0157284_10118571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	714	Open in IMG/M
3300012897\|Ga0157285_10188047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	641	Open in IMG/M
3300012903\|Ga0157289_10230035	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300012905\|Ga0157296_10062692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei → Burkholderia pseudomallei 1710b	914	Open in IMG/M
3300012906\|Ga0157295_10000164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	7001	Open in IMG/M
3300012907\|Ga0157283_10000350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	6354	Open in IMG/M
3300012909\|Ga0157290_10454340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	513	Open in IMG/M
3300012914\|Ga0157297_10020079	All Organisms → cellular organisms → Bacteria → Proteobacteria	1486	Open in IMG/M
3300012916\|Ga0157310_10068684	All Organisms → cellular organisms → Bacteria → Proteobacteria	1071	Open in IMG/M
3300012943\|Ga0164241_10943777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	632	Open in IMG/M
3300013100\|Ga0157373_10960376	Not Available	636	Open in IMG/M
3300014497\|Ga0182008_10236144	Not Available	939	Open in IMG/M
3300015371\|Ga0132258_11437367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1742	Open in IMG/M
3300015372\|Ga0132256_102988845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	568	Open in IMG/M
3300015373\|Ga0132257_100476469	All Organisms → cellular organisms → Bacteria → Proteobacteria	1528	Open in IMG/M
3300022737\|Ga0247747_1001939	All Organisms → cellular organisms → Bacteria → Proteobacteria	2023	Open in IMG/M
3300022880\|Ga0247792_1001136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4129	Open in IMG/M
3300022889\|Ga0247785_1002131	All Organisms → cellular organisms → Bacteria → Proteobacteria	1842	Open in IMG/M
3300022892\|Ga0247753_1001379	All Organisms → cellular organisms → Bacteria → Proteobacteria	2337	Open in IMG/M
3300023064\|Ga0247801_1088848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	512	Open in IMG/M
3300023069\|Ga0247751_1020153	All Organisms → cellular organisms → Bacteria → Proteobacteria	1039	Open in IMG/M
3300023071\|Ga0247752_1009628	All Organisms → cellular organisms → Bacteria → Proteobacteria	1308	Open in IMG/M
3300023073\|Ga0247744_1054410	All Organisms → cellular organisms → Bacteria → Proteobacteria	658	Open in IMG/M
3300023102\|Ga0247754_1024066	All Organisms → cellular organisms → Bacteria → Proteobacteria	1344	Open in IMG/M
3300023168\|Ga0247748_1001719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2496	Open in IMG/M
3300023260\|Ga0247798_1050324	All Organisms → cellular organisms → Bacteria → Proteobacteria	575	Open in IMG/M
3300025549\|Ga0210094_1016707	All Organisms → cellular organisms → Bacteria → Proteobacteria	1154	Open in IMG/M
3300025914\|Ga0207671_11367720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	550	Open in IMG/M
3300025914\|Ga0207671_11589886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	503	Open in IMG/M
3300025917\|Ga0207660_10853962	All Organisms → cellular organisms → Bacteria → Proteobacteria	743	Open in IMG/M
3300025919\|Ga0207657_10048716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3698	Open in IMG/M
3300025930\|Ga0207701_10342046	Not Available	1295	Open in IMG/M
3300025934\|Ga0207686_10540457	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300025945\|Ga0207679_10727097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	902	Open in IMG/M
3300025960\|Ga0207651_10940334	All Organisms → cellular organisms → Bacteria → Proteobacteria	771	Open in IMG/M
3300026023\|Ga0207677_11712952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	583	Open in IMG/M
3300026067\|Ga0207678_10657477	All Organisms → cellular organisms → Bacteria → Proteobacteria	921	Open in IMG/M
3300026089\|Ga0207648_10139799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2134	Open in IMG/M
3300026118\|Ga0207675_100029827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5079	Open in IMG/M
3300026811\|Ga0207529_104899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	521	Open in IMG/M
3300026960\|Ga0207582_1000847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2123	Open in IMG/M
3300026995\|Ga0208761_1000169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2260	Open in IMG/M
3300027440\|Ga0207571_100272	All Organisms → cellular organisms → Bacteria → Proteobacteria	976	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1021724	All Organisms → cellular organisms → Bacteria → Proteobacteria	1322	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10059267	Not Available	1005	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1010305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2225	Open in IMG/M
3300031847\|Ga0310907_10000588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	8458	Open in IMG/M
3300031940\|Ga0310901_10000412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	7705	Open in IMG/M
3300031943\|Ga0310885_10010015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3228	Open in IMG/M
3300032000\|Ga0310903_10016556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2412	Open in IMG/M
3300032012\|Ga0310902_10026747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2604	Open in IMG/M
3300032017\|Ga0310899_10075679	All Organisms → cellular organisms → Bacteria → Proteobacteria	1303	Open in IMG/M
3300032174\|Ga0307470_11832184	Not Available	514	Open in IMG/M
3300033004\|Ga0335084_11139673	All Organisms → cellular organisms → Bacteria → Proteobacteria	781	Open in IMG/M
3300033513\|Ga0316628_100843818	Not Available	1210	Open in IMG/M
3300033550\|Ga0247829_10745684	All Organisms → cellular organisms → Bacteria → Proteobacteria	815	Open in IMG/M
3300034818\|Ga0373950_0000849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3839	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.62%
Host-Associated	Host-Associated	37.38%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.68%
Plants	Host-Associated → Plants	37.38%
Aquatic	Environmental → Aquatic	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.15%
Roots	Host-Associated → Plants → Roots	1.87%
Marine	Environmental → Aquatic → Marine	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.40%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.21%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.35%
Loam	Environmental → Terrestrial → Soil → Loam	5.61%
Sand	Environmental → Terrestrial → Soil → Sand	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.87%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.23%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	17.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.35%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.67%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	10.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.54%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.74%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	2.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.80%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.87%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.93%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Arabidopsis Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001989	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5	Host-Associated	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005159	Soil and rhizosphere microbial communities from Laval, Canada - mgLPB	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005276	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012474	Unplanted soil (control) microbial communities from North Carolina - M.Soil.3.yng.040610	Environmental	Open in IMG/M
3300012496	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610	Environmental	Open in IMG/M
3300012502	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610	Host-Associated	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012509	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300022737	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300022889	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S096-311B-4	Environmental	Open in IMG/M
3300022892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5	Environmental	Open in IMG/M
3300023064	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S001-104B-6	Environmental	Open in IMG/M
3300023069	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5	Environmental	Open in IMG/M
3300023071	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S019-104C-5	Environmental	Open in IMG/M
3300023073	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300023168	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S064-202C-5	Environmental	Open in IMG/M
3300023260	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S197-509C-6	Environmental	Open in IMG/M
3300025549	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026811	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4w-12 (SPAdes)	Environmental	Open in IMG/M
3300026960	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A5-10 (SPAdes)	Environmental	Open in IMG/M
3300026995	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)	Environmental	Open in IMG/M
3300027440	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K2-12 (SPAdes)	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24739J22299_102338271	3300001989	Corn Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRTRESTRVAT
Ga0062589_1019288231	3300004156	Soil	MRARAAIVAGLLAAVVPLDSPAQAQLSPQGILGGVTRPLRQMLGHFGHFPRSYRHRSSSGARATAPVPDRDAQGAVKSRLGRAGPAAWVTVYEEVLGFAFWPDDYGAQFRSRGFDVIADTIT
Ga0063356_1060493111	3300004463	Arabidopsis Thaliana Rhizosphere	RATIVAGLLIAAVPLDSPAQAQLSPQGIIGGVTRPLRQMLGHFGHYPRSYRHRSSGGARAAAPVPDRDTQSPLKSRLGRAGPAAWVTAYEEVLGFTFWPDDYGAQFRSRGFEVIADTITGRFDRIRAPTRVATTGAARSDGGTDVSAAHCNDASSADDKWPASRIEQLLQLSD
Ga0062595_1001759992	3300004479	Soil	MRTRTAIVAGLLVAAIPLDSPAQAQLSPQGILGGVTRPLRQVLGHFGHFPRNYRHRTSGGARAAVPIPDRDAQGAIKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRTRAPRVATTGA
Ga0062595_1021776961	3300004479	Soil	MRAHAAIVAGLLVAAVSLDSPAQAQLSPQGILGGVTRPLRQMFGHFGHFPRSYRHRPSGGARAAAPLPERDVQSPVKSRLGHAGPAAWVTAYEE
Ga0062592_1020390551	3300004480	Soil	MRARAVIVAGLLLAAVPLDSPAQAQLSPQGILGGVTRPLRQMLGHFGHFPRNYRHRSSSGARAATSAPDRDIQGAVKSRLGRAGPAAWVTAYEEVLGFAFWPDDYG
Ga0066808_10095361	3300005159	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMR
Ga0066814_101216472	3300005162	Soil	MGARAAIVAGLLAAAVPLDSPAQAQLSPQGIVGGVTRPLRQMLGHFGHFPRSYRHRSSSGGRAAAPVPDRDAQGTVKSHLGRAGPAAWVTTYEEVLGFAFWPD
Ga0065717_10036181	3300005276	Arabidopsis Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTI
Ga0070692_100208351	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVLDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTRVATTGAARSDGGSDV
Ga0070668_1000759343	3300005347	Switchgrass Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTRVATTGAARSDGSNDVSSDQCNDAAS
Ga0070669_1000422444	3300005353	Switchgrass Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTRVATTGAARSDGGSGVSSDQCNDAA
Ga0070674_1022158341	3300005356	Miscanthus Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRM
Ga0070673_1014946152	3300005364	Switchgrass Rhizosphere	MRTRTAIVAGLLVAAIPLDSPAQAQLSPQGILGGVTRPLRQVLGHFGHFPRNYRHRTSGGARAAVPIPDRDAQGAIKSRLGRAGPAAWVTAY
Ga0070703_102862711	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPA
Ga0070663_1006342462	3300005455	Corn Rhizosphere	MRAHAAIVAGLLVAAVSLDSPAQAQLSPQGILGGVTRPLRQMFGHFGHFPRSYRHRPSGGARAAAPLPERDVQSPVKSRLGHAGPAAWVTAYEEVLGFAFWPDDYGAQFRSRGFDV
Ga0068867_1001517141	3300005459	Miscanthus Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRGSTRVATTGAA
Ga0073909_100440621	3300005526	Surface Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTRRATTGAARSDG
Ga0070672_1005671142	3300005543	Miscanthus Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTRVATTGAARSDGSNDVSSDQCNDAASAGDKW
Ga0070693_1015124871	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MRAHAAIVAGLLVAAVSLDSPAQAQLSPQGILGGVTRPLRQMFGHFGHFPRSYRHRPSGGARAATPLPERDVQSPVKSRLGHAGPAAWVTAYEEVLGFAFWPD
Ga0070704_1000407681	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRTRESTRVATTGAARSDGGSDV
Ga0070664_1008333581	3300005564	Corn Rhizosphere	MRAHAAIVAGLLVAAVSLDSPAQAQLSPQGILGGVTRPLRQMFGHFGHFPRSYRHRPSGGARAATPLPERDVQSPVKSRLGHAGPAAWVTAYEEVLGFAFWPDDYGAQFRSRGFDVIVDTITGRVDRMRTPTRVATTGTARSDGGSDASADQCNDS
Ga0068854_1000760273	3300005578	Corn Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYG
Ga0068852_1011793041	3300005616	Corn Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFD
Ga0066903_1089324651	3300005764	Tropical Forest Soil	MHARTVIVAGLLAAAVPLDSPVQAQLSPQGIIGGVTRPLRGMLGHFGHFPRSHRHRSSSGARAAAPAATAPALAPERDTQGTVKSRLGRAGPAAWVTAYEETLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRAPRVATTGAARNDTGNDISAGQCNDASS
Ga0075432_100862671	3300006058	Populus Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTISGRFDRMRESTWVATTGAAR
Ga0075367_100480281	3300006178	Populus Endosphere	MHARAIIVAGLLIAAIPLDNPAQGQLSPQGIIGGVTRPLRQMLGHFGHFPRNYRHRSSSGARVAAPAAAAAPALAPERDTQSTVKSRLG
Ga0074050_114937121	3300006577	Soil	MRARAVIVAGLLIAAVPLDSPAQAQLSPQGILGGVTRPLRQMLGHFGHFPRTYRHRSSSGARAAAPAPDRDVQSAVKFRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVITDTITGRFDRMRAPTQVAT
Ga0074054_121786762	3300006579	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFR
Ga0074062_129164442	3300006606	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTRVATTG
Ga0068865_1001575653	3300006881	Miscanthus Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGHAGPA
Ga0075424_1010207901	3300006904	Populus Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAY
Ga0074063_135130642	3300006953	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHFPRSYRHRSSNGARADAPAPDRDTQGAVKSRLGRAGPAAWITAYEEVLGFAFWPDDHAAQFRSRGFDVIADTITGRFDGMRAPTRVATTGAARSDGGT
Ga0079219_108164992	3300006954	Agricultural Soil	MRAHAAIVAGLLVAAVSLDSPAQAQLSPQGILGGVTRPLRQMFGHFGHFPRSYRHRPSGGARAAAPLPERDVQSPVKSRLGHAGPAAWVTAYEEVLGFAFWPDDYGAQFRSRGF
Ga0111539_132903261	3300009094	Populus Rhizosphere	MHARAIIVAGLLIAAVPLDSPAQAQLSPQGIVGSVTRPLRQMLGHFGHFPRSYRHRSSSGARAAAPAAALAPERDTQGTVKSRLGRAGPAA
Ga0105245_107446702	3300009098	Miscanthus Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTRVATTGAARSDGGNDVSSDQCNDAASAGVA*
Ga0105238_110993522	3300009551	Corn Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTRVATTGAARSDGS
Ga0105238_120538641	3300009551	Corn Rhizosphere	MRAHAAIVAGLLVAAVSLDSPAQAQLSPQGILGGVTRPLRQMFGHFGHFPRSYRHRPSGGARAAAPLPERDVQSPVKSRLGHAGPAAWVTAYEEVLGF
Ga0134125_103886871	3300010371	Terrestrial Soil	MHARAVVIAGLFFAAVPLDSPVQAQSSPQGIIGGVTRPLRQMFGHFGHFPRSYRHRSAAGARAAAPPPDRDTQGATKFRFGRAGPAAWPT
Ga0134126_128394781	3300010396	Terrestrial Soil	MRARAVIVAGLLLAAVPLDSPAQAQLSPQGILGGVTRPLRQMLGHFGHFPRNYRHRSSSGARAATSAPDRDIQGAVKSRLGRAGPAAWVTAYEEVLGFAFWPDDYGAQFRGRGFDVIADTISGRFDRMRSP
Ga0134127_100434674	3300010399	Terrestrial Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRTRESTRVATTGAARSDGGSDVPADQC
Ga0134127_104617001	3300010399	Terrestrial Soil	MRARAVIVAGLLLAAVPLDSPAQAQLSPQGILGGVTRPLRQMLGHFGHFPRNYRHRSSSGARAATSAPDRDIQGAVKSRLGRAGPAAWVTAYEEVLGFAF
Ga0134121_101707751	3300010401	Terrestrial Soil	MRTRTAIVAGLLVAAIPLDSPAQAQLSPQGILGGVTRPLRQVLGHFGHFPRNYRHRTSGGARAAVPIPDRDAQGAIKSRLGRAGPAAWVTAYEDALGFAFWPDDYGAQFRSRGVDVI
Ga0151490_15091141	3300011107	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGHFGHFPRSYQHRSSSGTRAAAPAPDRDVQGAVKSRLGRAGPAAWVTAYEDVLGFAF
Ga0105246_121558251	3300011119	Miscanthus Rhizosphere	MRAHAAIVAGLLVAAVSLDSPAQAQLSPQGILGGVTRPLRQMFGHFGHFPRSYRHRPSGGARAATPLPERYVQSPVKSRLGHAGPAAWVTAYEEVLGFAFWPDDYG
Ga0157356_10103361	3300012474	Unplanted Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADSITGRFDRMRESTWVATTGAARSDGSNDVSSDQC
Ga0157353_10174122	3300012496	Unplanted Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYE
Ga0157347_10554571	3300012502	Arabidopsis Rhizosphere	AIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTRVATTGAARSDGSNDVSSDQCNDAASAGDKSLTGLRERVLLNRVEYADGSIWQRRDW
Ga0157342_10034652	3300012507	Arabidopsis Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNLGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFALGPMITARNSAAAGLM*
Ga0157334_10644011	3300012509	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDV
Ga0157284_101185711	3300012893	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPMRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRTRESTRVATTGAA
Ga0157285_101880472	3300012897	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIAD
Ga0157289_102300351	3300012903	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGF
Ga0157296_100626922	3300012905	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGH
Ga0157295_100001641	3300012906	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRTRESTRVATTGAARSDGGSDVSS
Ga0157283_100003505	3300012907	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRTR
Ga0157290_104543401	3300012909	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGA
Ga0157297_100200792	3300012914	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRLDRMRGSTRVATTGTARNDGGNDVTLVPDPGVLNFAAGRKF
Ga0157310_100686841	3300012916	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGA
Ga0164241_109437771	3300012943	Soil	MRVRATIVAGLLIAAVPLDSPAQAQLSPQGILGGVTRPLRQMLGHFGHFPRSYRHRSSSGARAAVPTPDRDTQGAVKSRLGRAGPAAWVTAYEEVLGFAFWPNDYGAQFRSRGFDVIADTISGRFDRAPTRVATTGAARNDGGTDVSADQ
Ga0157373_109603761	3300013100	Corn Rhizosphere	AVIVAGLLLAAVPLDSPAQAQLSPQGILGGVTRPLRQMLGHFGHFPRNYRHRSSSGARAATSAPDRDIQGAVKSRLGRAGPAAWVTAYEEVLGFAFWPDDYSAIPQPRVRCDCRHDQRPV
Ga0182008_102361442	3300014497	Rhizosphere	MRTRTAIVAGLLVAAIPLDSPAQAQLSPQGILGGVTRPLRQVLGHFGHFPRNYRHRTSGGARAAVPIPDRDAQGAIKSRLGRAGPAAWVTAYEDVLGFAF
Ga0132258_114373671	3300015371	Arabidopsis Rhizosphere	MHARATIVAGLLIAAVPLDSPAQAQLSPQGIIGGVTRPLRQMLGHFGHFPRSYRHRSSSGARAAAPAAAAPALVPERDTQGTVKSRLGRAGPAAWVTAYEEVLGFAFWPDDYGAQFRSRGFDVIVDTIT
Ga0132256_1029888451	3300015372	Arabidopsis Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFD
Ga0132257_1004764692	3300015373	Arabidopsis Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMREST
Ga0247747_10019393	3300022737	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITG
Ga0247792_10011364	3300022880	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMREST
Ga0247785_10021311	3300022889	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPATWVTAYEDVLGFAFWPDDYGAQF
Ga0247753_10013793	3300022892	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTRVAT
Ga0247801_10888481	3300023064	Soil	MGARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRM
Ga0247751_10201532	3300023069	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRG
Ga0247752_10096281	3300023071	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDV
Ga0247744_10544101	3300023073	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLG
Ga0247754_10240661	3300023102	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRT
Ga0247748_10017193	3300023168	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIAD
Ga0247798_10503242	3300023260	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYED
Ga0210094_10167072	3300025549	Natural And Restored Wetlands	MRARAAIVAGLLVAVVPLDSPAQAQLSPQGIIGGVTRPLRQMLGHFGHFPRSYRHRSSSGARAAAPAAALADRDAPGAVKSRLGRAGPVAWVTAYEEVLGFAFWPDNYGAQFRSRGFDV
Ga0207671_113677201	3300025914	Corn Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTRVATTGAARSDGSSDVSSDQCDD
Ga0207671_115898861	3300025914	Corn Rhizosphere	MRAHAAIVAGLLVAAVSLDSPAQAQLSPQGILGGVTRPLRQMFGHFGHFPRSYRHRPSGGARAATPLPERDVQSPVKSRLGHAGPAAWVTAYEEVLGFAFWPDDYGAQFRSRGFDVI
Ga0207660_108539622	3300025917	Corn Rhizosphere	MRARAVIVAGLLLAAVPLDSPAQAQLSPQGILGGVTRPLRQMLGHFGHFPRNYRHRSSSGARAATSAPDRDIQGAVKSRLGRAGPAAWVTAYEEVLGFAFWPDDYGAQFRSRGFDVIADTISGRFDRMRSPT
Ga0207657_100487161	3300025919	Corn Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGHAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRTRESTRVATTGAARSDGGSDVSSDQCNDAASTGD
Ga0207701_103420462	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRTRTAIVAGLLVAAIPLDSPAQAQLSPQGILGGVTRPLRQVLGHFGHFPRNYRHRTSGGARAAVPIPDRDAQGAIKSRLGRAGPAAWVT
Ga0207686_105404572	3300025934	Miscanthus Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVESRLGHAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTR
Ga0207679_107270971	3300025945	Corn Rhizosphere	MRAHAAIVAGLLVAAVSLDSPAQAQLSPQGILGGVTRPLRQMFGHFGHFPRSYRHRPSGGARAATPLPERDVQSPVKSRLGHAGPAAWVTAYEEVLGFAFWPDDYGAQFRSRGFDVIVDTITGRVDRMRTPTRVATTGTARSDGGSDASADQCNDSAI
Ga0207651_109403341	3300025960	Switchgrass Rhizosphere	MRTRTAIVAGLLVAAIPLDSPAQAQLSPQGILGGVTRPLRQVLGHFGHFPRNYRHRTSGGARAAVPIPDRDAQGAIKSRLGRAGPAAWVTAYEDVLGFA
Ga0207677_117129521	3300026023	Miscanthus Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVI
Ga0207678_106574772	3300026067	Corn Rhizosphere	MRAHAAIVAGLLVAAVSLDSPAQAQLSPQGILGGVTRPLRQMFGHFGHFPRSYRHRPSGGARAAAPLPERDVQSPVKSRLGHAGPAAWVTAYEEVLGFAFWPDDYGAQFRSRGFDVIVD
Ga0207648_101397993	3300026089	Miscanthus Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRG
Ga0207675_1000298271	3300026118	Switchgrass Rhizosphere	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDR
Ga0207529_1048991	3300026811	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRTRESTRVATTGAARSDGGSDVFVH
Ga0207582_10008473	3300026960	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGF
Ga0208761_10001693	3300026995	Soil	MGARAAIVAGLLAAAVPLDSPAQAQLSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRF
Ga0207571_1002721	3300027440	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGHAGPAAWVTAYEDVLGFAFWPDDYGAQFRSHGFDVVVDAITGRFDRMRAP
(restricted) Ga0255311_10217242	3300031150	Sandy Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHFPRSHRHRSSGGARAAAPVPDRDVQGTVKSRLGRAGPAAWVTAYEEVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRGSTRVATTGAARSDGGTDVSSD
(restricted) Ga0255310_100592672	3300031197	Sandy Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGVIGGVTRPLRQMLGNFGHFPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVT
(restricted) Ga0255312_10103051	3300031248	Sandy Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHFPRSHRHRSSGGARAAAPVPDRDVQGTVKSRLGRAGPAAWVTAYEEVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRGSTRVATTGAARSDGGT
Ga0310907_100005887	3300031847	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTWVATTGAA
Ga0310901_100004121	3300031940	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTRVATTGAARSDGGNDVSSDQCNDAASAGDKW
Ga0310885_100100154	3300031943	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTRVATTGAARSDGSND
Ga0310903_100165563	3300032000	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTRVATTGAARSDGSNDVSSDQCNDAASAGDKW
Ga0310902_100267471	3300032012	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMRESTRVATT
Ga0310899_100756792	3300032017	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGHAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGR
Ga0307470_118321842	3300032174	Hardwood Forest Soil	MHARTVIVAGLLAAAVPLESPAQAQLSPQGIIGGVTRPFRQMLGQFGHFPRSYRHRSSSGARAAAPAAASVVAPVDPDGPGAVKSRL
Ga0335084_111396732	3300033004	Soil	MRARAAIFASLLIAAVPLDSPAQAQLSPQGVIGGVTRPLRQMLGHFGHFPRSYRHRSSSGARAATPVPDRDAQSAVKTRLGRAGPAAWVTAYEEVLGFALWPDDYGAQFRSRGFDVIADTITGRFDRMRGSTRVATTGTARNDGGNDVSGE
Ga0316628_1008438182	3300033513	Soil	MRRHAVILIGLLAAAVPLDGSAQAQLSPQGILGGITRPFRQMLGHFGHYPRTNRHRGAPDRASAAIHSPERETSGLAISRLGRAGPAAWPGAYEEMLGFAFWP
Ga0247829_107456842	3300033550	Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIVGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRMR
Ga0373950_0000849_1_375	3300034818	Rhizosphere Soil	MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters