Metagenome Family F092349

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092349
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	63 residues
Representative Sequence	LNKFWLFFGIFLAFTGFGTIPGILLIVFFIWNDLKKDIKNQNNSDNEVEFTAKYYNEDTLNDMK
Number of Associated Samples	60
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	48.60 %
% of genes near scaffold ends (potentially truncated)	28.97 %
% of genes from short scaffolds (< 2000 bps)	94.39 %
Associated GOLD sequencing projects	52
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Archaea (100.000 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater (27.103 % of family members)
Environment Ontology (ENVO)	Unclassified (85.981 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (56.075 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.78% β-sheet: 0.00% Coil/Unstructured: 40.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00382	TFIIB	12.15
PF04467	DUF483	0.93
PF04480	DUF559	0.93
PF03852	Vsr	0.93
PF10117	McrBC	0.93
PF13772	AIG2_2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3727	G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein	Replication, recombination and repair [L]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	91.59 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	91.59 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Thaumarchaeota incertae sedis	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis	86.92 %
Nitrosopumilales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	1.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Nitrosopelagicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus	85.05 %
Nitrosopumilaceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1.87 %
Candidatus Nitrosotenuis	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis	1.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Nitrosopelagicus	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus	85.05 %
Candidatus Nitrosomarinus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Candidatus Nitrosomarinus	1.87 %
Candidatus Nitrosotenuis aquarius	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis → Candidatus Nitrosotenuis aquarius	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Nitrosopelagicus sp.	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	85.05 %
Candidatus Nitrosomarinus catalina	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Candidatus Nitrosomarinus → Candidatus Nitrosomarinus catalina	1.87 %
Candidatus Nitrosotenuis aquarius	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis → Candidatus Nitrosotenuis aquarius	0.93 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2236876010\|none_p0300305	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	503	Open in IMG/M
3300001683\|GBIDBA_10142369	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	619	Open in IMG/M
3300002913\|JGI26060J43896_10022924	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1970	Open in IMG/M
3300002913\|JGI26060J43896_10055655	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1102	Open in IMG/M
3300003478\|JGI26238J51125_1003050	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	5463	Open in IMG/M
3300004097\|Ga0055584_100749475	All Organisms → cellular organisms → Archaea	1021	Open in IMG/M
3300004097\|Ga0055584_102539863	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	516	Open in IMG/M
3300004110\|Ga0008648_10095693	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	829	Open in IMG/M
3300004110\|Ga0008648_10200849	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	542	Open in IMG/M
3300004277\|Ga0066611_10086043	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1133	Open in IMG/M
3300004277\|Ga0066611_10202441	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	678	Open in IMG/M
3300005239\|Ga0073579_1124219	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	939	Open in IMG/M
3300005838\|Ga0008649_10093109	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1253	Open in IMG/M
3300006193\|Ga0075445_10151741	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	833	Open in IMG/M
3300006193\|Ga0075445_10234061	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	633	Open in IMG/M
3300008253\|Ga0105349_10240654	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	753	Open in IMG/M
3300008253\|Ga0105349_10445590	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	540	Open in IMG/M
3300009126\|Ga0118723_1164545	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1264	Open in IMG/M
3300009126\|Ga0118723_1266675	All Organisms → cellular organisms → Archaea	872	Open in IMG/M
3300009132\|Ga0118730_1217706	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Candidatus Nitrosomarinus → Candidatus Nitrosomarinus catalina	1098	Open in IMG/M
3300009173\|Ga0114996_10317062	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1215	Open in IMG/M
3300009173\|Ga0114996_10794594	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	685	Open in IMG/M
3300009173\|Ga0114996_11118227	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	554	Open in IMG/M
3300009375\|Ga0118721_1077868	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1474	Open in IMG/M
3300009409\|Ga0114993_10733139	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	717	Open in IMG/M
3300009409\|Ga0114993_10972351	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	605	Open in IMG/M
3300009420\|Ga0114994_10155205	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1550	Open in IMG/M
3300009420\|Ga0114994_10181504	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1420	Open in IMG/M
3300009420\|Ga0114994_10263720	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1151	Open in IMG/M
3300009420\|Ga0114994_10379926	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis → Candidatus Nitrosotenuis aquarius	936	Open in IMG/M
3300009420\|Ga0114994_10403339	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	905	Open in IMG/M
3300009705\|Ga0115000_10430327	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	837	Open in IMG/M
3300009705\|Ga0115000_10639772	All Organisms → cellular organisms → Archaea	660	Open in IMG/M
3300009706\|Ga0115002_10176843	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1675	Open in IMG/M
3300009786\|Ga0114999_10647753	All Organisms → cellular organisms → Archaea	797	Open in IMG/M
3300010883\|Ga0133547_10950689	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1669	Open in IMG/M
3300020431\|Ga0211554_10144873	All Organisms → cellular organisms → Archaea	1174	Open in IMG/M
3300020431\|Ga0211554_10239598	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	865	Open in IMG/M
3300021087\|Ga0206683_10252438	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	912	Open in IMG/M
3300021087\|Ga0206683_10381954	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	707	Open in IMG/M
3300021089\|Ga0206679_10220479	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1053	Open in IMG/M
3300021958\|Ga0222718_10137070	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1397	Open in IMG/M
3300021958\|Ga0222718_10252823	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	935	Open in IMG/M
3300021964\|Ga0222719_10684135	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	582	Open in IMG/M
(restricted) 3300022888\|Ga0233428_1019718	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	3333	Open in IMG/M
(restricted) 3300022888\|Ga0233428_1196863	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	667	Open in IMG/M
(restricted) 3300022912\|Ga0233430_1148484	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	983	Open in IMG/M
(restricted) 3300022933\|Ga0233427_10183531	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	934	Open in IMG/M
(restricted) 3300022933\|Ga0233427_10409668	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	544	Open in IMG/M
(restricted) 3300024258\|Ga0233440_1146108	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	702	Open in IMG/M
(restricted) 3300024261\|Ga0233439_10201843	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	910	Open in IMG/M
(restricted) 3300024302\|Ga0233449_1216236	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	598	Open in IMG/M
(restricted) 3300024324\|Ga0233443_1172095	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	777	Open in IMG/M
(restricted) 3300024324\|Ga0233443_1247409	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	608	Open in IMG/M
3300025547\|Ga0209556_1119470	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	557	Open in IMG/M
3300025709\|Ga0209044_1199115	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	567	Open in IMG/M
3300025719\|Ga0209252_1068098	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1278	Open in IMG/M
3300025719\|Ga0209252_1175708	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	673	Open in IMG/M
3300025722\|Ga0209660_1046604	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Candidatus Nitrosomarinus → Candidatus Nitrosomarinus catalina	1646	Open in IMG/M
3300025727\|Ga0209047_1170238	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	675	Open in IMG/M
3300025890\|Ga0209631_10017761	All Organisms → cellular organisms → Archaea	5832	Open in IMG/M
3300027672\|Ga0209383_1116742	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	870	Open in IMG/M
3300027672\|Ga0209383_1200479	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	581	Open in IMG/M
3300027801\|Ga0209091_10345297	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	690	Open in IMG/M
3300027813\|Ga0209090_10205242	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1014	Open in IMG/M
3300027813\|Ga0209090_10209393	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1001	Open in IMG/M
3300027827\|Ga0209035_10081391	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1591	Open in IMG/M
3300027827\|Ga0209035_10533589	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	565	Open in IMG/M
3300027839\|Ga0209403_10043533	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	3407	Open in IMG/M
3300027844\|Ga0209501_10356093	All Organisms → cellular organisms → Archaea	880	Open in IMG/M
3300027847\|Ga0209402_10669367	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	575	Open in IMG/M
3300031142\|Ga0308022_1032263	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1668	Open in IMG/M
3300031142\|Ga0308022_1065881	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1111	Open in IMG/M
3300031142\|Ga0308022_1180095	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	598	Open in IMG/M
3300031143\|Ga0308025_1151540	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	821	Open in IMG/M
3300031143\|Ga0308025_1198393	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	687	Open in IMG/M
3300031598\|Ga0308019_10028222	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	2500	Open in IMG/M
3300031598\|Ga0308019_10053355	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1723	Open in IMG/M
3300031598\|Ga0308019_10094533	All Organisms → cellular organisms → Archaea	1224	Open in IMG/M
3300031598\|Ga0308019_10310801	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	584	Open in IMG/M
3300031757\|Ga0315328_10102560	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1647	Open in IMG/M
3300031757\|Ga0315328_10253910	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1029	Open in IMG/M
3300031766\|Ga0315322_10502569	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	792	Open in IMG/M
3300031766\|Ga0315322_10976111	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	509	Open in IMG/M
3300031773\|Ga0315332_10801288	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	572	Open in IMG/M
3300031773\|Ga0315332_10892141	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	534	Open in IMG/M
3300031774\|Ga0315331_11073049	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	543	Open in IMG/M
3300031775\|Ga0315326_10133543	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1625	Open in IMG/M
3300031775\|Ga0315326_10238311	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1194	Open in IMG/M
3300031775\|Ga0315326_10702670	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	636	Open in IMG/M
3300031775\|Ga0315326_10966121	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	522	Open in IMG/M
3300031775\|Ga0315326_11031698	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	501	Open in IMG/M
3300031801\|Ga0310121_10141898	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1504	Open in IMG/M
3300032011\|Ga0315316_10088392	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	2522	Open in IMG/M
3300032011\|Ga0315316_10570424	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	946	Open in IMG/M
3300032011\|Ga0315316_10577079	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	940	Open in IMG/M
3300032011\|Ga0315316_10630818	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	893	Open in IMG/M
3300032011\|Ga0315316_10716667	All Organisms → cellular organisms → Archaea	830	Open in IMG/M
3300032011\|Ga0315316_10776754	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	791	Open in IMG/M
3300032032\|Ga0315327_10230538	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1162	Open in IMG/M
3300032032\|Ga0315327_10260911	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1088	Open in IMG/M
3300032032\|Ga0315327_10599207	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	680	Open in IMG/M
3300032032\|Ga0315327_10768969	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	586	Open in IMG/M
3300032073\|Ga0315315_10195256	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1890	Open in IMG/M
3300032088\|Ga0315321_10624907	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	635	Open in IMG/M
3300032360\|Ga0315334_10684160	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis	887	Open in IMG/M
3300032360\|Ga0315334_11754698	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	528	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	37.38%
Oceanic	Environmental → Aquatic → Marine → Oceanic	25.23%
Unclassified	Environmental → Aquatic → Marine → Unclassified	20.56%
Inlet	Environmental → Aquatic → Marine → Inlet	9.35%
Coastal	Environmental → Aquatic → Marine → Coastal	3.74%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.80%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	37.38%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	25.23%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	20.56%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	9.35%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	27.10%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	23.36%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	9.35%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	9.35%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	8.41%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	7.48%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	3.74%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.80%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	2.80%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.87%
Methane Seep Mesocosm	Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm	1.87%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine	0.93%
Hydrothermal Vent Plume	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2236876010	Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-0p1-Hyp-75m	Environmental	Open in IMG/M
3300001683	Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly	Environmental	Open in IMG/M
3300002913	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV	Environmental	Open in IMG/M
3300003478	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA	Environmental	Open in IMG/M
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental	Open in IMG/M
3300004110	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA	Environmental	Open in IMG/M
3300004277	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_200m	Environmental	Open in IMG/M
3300005239	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine	Environmental	Open in IMG/M
3300005838	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_130m_DNA	Environmental	Open in IMG/M
3300006193	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA	Environmental	Open in IMG/M
3300008253	Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon	Environmental	Open in IMG/M
3300009126	Combined Assembly of Gp0139357, Gp0139356	Environmental	Open in IMG/M
3300009132	Combined Assembly of Gp0139359, Gp0139510	Environmental	Open in IMG/M
3300009173	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134	Environmental	Open in IMG/M
3300009375	Combined Assembly of Gp0137073, Gp0137074	Environmental	Open in IMG/M
3300009409	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150	Environmental	Open in IMG/M
3300009420	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152	Environmental	Open in IMG/M
3300009705	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128	Environmental	Open in IMG/M
3300009706	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86	Environmental	Open in IMG/M
3300009786	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126	Environmental	Open in IMG/M
3300010883	western Arctic Ocean co-assembly	Environmental	Open in IMG/M
3300020431	Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)	Environmental	Open in IMG/M
3300021087	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015	Environmental	Open in IMG/M
3300021089	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022888 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_120_MG	Environmental	Open in IMG/M
3300022912 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_150_MG	Environmental	Open in IMG/M
3300022933 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MG	Environmental	Open in IMG/M
3300024258 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_120_MG	Environmental	Open in IMG/M
3300024261 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MG	Environmental	Open in IMG/M
3300024302 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_200_MG	Environmental	Open in IMG/M
3300024324 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_200_MG	Environmental	Open in IMG/M
3300025547	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_150m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025709	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_130m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025719	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_135m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025722	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_100m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025727	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_165m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025890	Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)	Environmental	Open in IMG/M
3300027672	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)	Environmental	Open in IMG/M
3300027801	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)	Environmental	Open in IMG/M
3300027813	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)	Environmental	Open in IMG/M
3300027827	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV (SPAdes)	Environmental	Open in IMG/M
3300027839	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)	Environmental	Open in IMG/M
3300027844	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)	Environmental	Open in IMG/M
3300027847	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)	Environmental	Open in IMG/M
3300031142	Marine microbial communities from water near the shore, Antarctic Ocean - #353	Environmental	Open in IMG/M
3300031143	Marine microbial communities from water near the shore, Antarctic Ocean - #422	Environmental	Open in IMG/M
3300031598	Marine microbial communities from water near the shore, Antarctic Ocean - #284	Environmental	Open in IMG/M
3300031757	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315	Environmental	Open in IMG/M
3300031766	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515	Environmental	Open in IMG/M
3300031773	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915	Environmental	Open in IMG/M
3300031774	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915	Environmental	Open in IMG/M
3300031775	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315	Environmental	Open in IMG/M
3300031801	Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986	Environmental	Open in IMG/M
3300032011	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416	Environmental	Open in IMG/M
3300032032	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315	Environmental	Open in IMG/M
3300032073	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416	Environmental	Open in IMG/M
3300032088	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515	Environmental	Open in IMG/M
3300032360	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
none_03003051	2236876010	Marine Estuarine	LNKFWLFFGIFLSFTGFGTIPGILLIVFFIWSDLKTDIKNQNSSQNEIESTAKYYNEDTLNDMK
GBIDBA_101423692	3300001683	Hydrothermal Vent Plume	LNKFWLFFGIFLAFTGFGTIPGILLIVFFIWNDLKKDIKNQNNSDNEVEFTAKYYNEDTLNDMK*
JGI26060J43896_100229245	3300002913	Marine	LNKFWLFFGIFLAFTGFGTIPGILLIVFFIWNDLKAEIKNQNNSEEEVEFIAKYYNEETLNDMK*
JGI26060J43896_100556552	3300002913	Marine	VGIRRYILNKFWLFFGIFLAFTGFGTIPGILLIVFFIWNDLKAEIKNQNNSEEEVEFIAKYYQEGNAK*
JGI26238J51125_10030502	3300003478	Marine	LNKFWLFFGIFLSFTGFGTIPGILLVVIFVWSDLKKGNKNQNSSDDEIQFTSKYYNEDTLNEMK*
Ga0055584_1007494752	3300004097	Pelagic Marine	LNKFWFFLGIFLVFTGFGTMLGIMLIVFFIWDDLKSDIKSQNNSEDDVEFTAKYYNEDTLNDMK*
Ga0055584_1025398632	3300004097	Pelagic Marine	VNKFWLFFGIFLSFTGFGIVPGILLIIIWVWNDLKTDIKNQNDLDGEIQSNSKYYNEDTL
Ga0008648_100956932	3300004110	Marine	HILNKFWLFFGIFLSFTGFGTIPGILLVVIFVWSDLKKGNKNQNSSDDEIQFTSKYYNEDTLNEMK*
Ga0008648_102008492	3300004110	Marine	LNKFWLFFGIFLSFTGFGTIPGILLIVFFIWSDLKTDMKNQNSSQNEIGLAKQHYDEETLNDMR*
Ga0066611_100860432	3300004277	Marine	LNKFWLFFGIFLSFTGFGTIPGILLIVFFIWSDLKTDIKNQNSSQNEIESTAKYYNEDTLSDMK*
Ga0066611_102024411	3300004277	Marine	LNKFWLFFGIFLSFTGFGTIPGILLIVFFIWSDLKTDIKNQNSSQNEIGLAKQHYDEETLNDMR*
Ga0073579_11242192	3300005239	Marine	LFFGIFLSFTGFGIVPGILLIIIWVWNDLKTDIKNQNDLDGEIQSNSKYYNEDTLNEMK*
Ga0008649_100931092	3300005838	Marine	LNKFWFFLGIFLVFTGFGTMLGIMLIVFFIWDDIKTDIKTQNNSEDDVEFTAKYYNEDTLNDMK*
Ga0075445_101517411	3300006193	Marine	LNKFWFFFGIFLSFTGFGTIPGILLIVFFIWNDLKTEIKHQNKHEDGIEFTAKYYNEDTLNDMK*
Ga0075445_102340612	3300006193	Marine	LNKFLFFLGIFLIFTGFGTIPGVLLLVFIIWNDLKTDIKNQNNSKDDFEFTAKYYNEDTLNDMK*
Ga0105349_102406541	3300008253	Methane Seep Mesocosm	VGIRGYILNKFWLFFGIFLSFTGFGTIPGILLVVIFVWSDLKKGSKNQNRIDDEIQFTSKYYNEDTLNEMK*
Ga0105349_104455902	3300008253	Methane Seep Mesocosm	LNKFWFFLGIFLVFTGFGTIFGIMLIVFFIWDDIKTDIKSQNNSEDDVEFTAKYYNEDTLNDMK*
Ga0118723_11645451	3300009126	Marine	LFFGIFLSFTGFGTVPGILLVILFVWSDLKKESKIQNISDDEIPFTSKYYNEDTLNEMK*
Ga0118723_12666751	3300009126	Marine	LNKFWFFLGIFLVFTGFGTIFGIMLIVFFIWDDIKTDIKSQNNSEDDVEFAAKYYNEDTLNDMK*
Ga0118730_12177061	3300009132	Marine	LNKFWFFLGIFLVFTGFGTILGLMLIVFFIWDDIKTDIKSQNNSEDDVEFTAKYYNEDTLNDMK*
Ga0114996_103170622	3300009173	Marine	LGIFLVFTGFGTILGILLIVLFIWNDLKADIKNQNNSDDEVEFTAKYYNEETLNDMK*
Ga0114996_107945942	3300009173	Marine	LFFGIFLAFTGFGTIPGILLIVFFIWNDLKTEIKNQNNSEDEVEFTAKYYNEETLNDMK*
Ga0114996_111182272	3300009173	Marine	LFFGIFLAFTGFGTIPGILLIVFFIWNDLKTEIKNQNNSEEEVEFTAKYYNEETLNDMK*
Ga0118721_10778682	3300009375	Marine	LFFGIFLSFTGFGTVPGILLVILFVWNDLKKESKNQNISDDEIPFTSKYYNEDTLNEMK*
Ga0114993_107331393	3300009409	Marine	MNKFLFFLGIFLVFTGFGTIPGVLLLVFIIWNDLKTDITNQNNSVDDVEFTAKYYNEDTLNDMK*
Ga0114993_109723511	3300009409	Marine	LNKFWFFLGIFLVFTGFGTILGILLIVLFIWNDLKADIKNQNNSDDEVEFTAKYYNEETLNDMK*
Ga0114994_101552055	3300009420	Marine	MNKFLFFLGIFLVFTGFGTIPGVLLLVFIIWNDLKTDITNQNNSEDDVEFTAKYYDEDTLNDMK*
Ga0114994_101815041	3300009420	Marine	LLFLSIFLVFTGFGTIPGVLLLVFIIWNDLKTEIKHQNKHEDGIEFTAKYYNEDTLNDMK
Ga0114994_102637202	3300009420	Marine	LFFGIFLAFTGFGTIPGILLIVFFIWNDMKTEIKNQNSSEDVVWIIQPKYYNEETLNDMK
Ga0114994_103799262	3300009420	Marine	VFTGFGTIPGVLLLVFIIWNDLKTEIKNQNNSEDDVEFTAKYYNEDTLNDMK*
Ga0114994_104033392	3300009420	Marine	VIFLNKFWLFFGIFLTFTGFGTIPGVLLIIFFIWSDLKSDIKNENDFANTVEFNPKYYNENTLKDMR*
Ga0115000_104303272	3300009705	Marine	LNKFWLFFGIFLTFTGFGTIPGVLLIIFFIWSDLKADIKNENDFTNAVEFDGKYYNENTLNDMK*
Ga0115000_106397721	3300009705	Marine	MNKFLFFLGIFLVFTGFGTIPGVLLLVFIIWNDLKTDIKNQNNSEDNVEFTAKYYDEDTLKDMK*
Ga0115002_101768434	3300009706	Marine	LFFGIFLAFTGFGTIPGILLIIFFIWNELKTEIKNQNNSENEVEFTAKYYNEETLNDMK*
Ga0114999_106477532	3300009786	Marine	VGIRRYILNKFWLFFGIFLAFTGFGTIPGILLIVFFIWNDLKTEIKNQNNSEDEVEFTAKYYNEETLNDMK*
Ga0133547_109506894	3300010883	Marine	LNKFWLFFGIFLTFTGFGTIPGVLLIIFFIWSDLKSDIKNENDFANAVEFDPKYYNENTLNDMK*
Ga0211554_101448732	3300020431	Marine	LNKFWFFLGIFLVFTGFGTMLGIMLVVFFIWDDLKSDIKSQNNSEDDVEFTAKYYNEDTLNDMK
Ga0211554_102395982	3300020431	Marine	LFLGIFLSFTGFATIPGILLVVIFVWSDLKKGSKNQNSIDDEIQFTSKYYNENTLNEMK
Ga0206683_102524382	3300021087	Seawater	LNKFWLFFGIFLAFTGFGTIPGILLIVFFIWNDLKKTDIKIQNNSEDEVEFTAKYYNEETLNDMK
Ga0206683_103819542	3300021087	Seawater	LNKFWFFLGIFLVFTGFGTMLGIMLIVFFIWDDLKSDIKSQNNSEDDVEFTAKYYNEDTLNDMK
Ga0206679_102204794	3300021089	Seawater	LNKFWLFFGIFLAFTGFGTIPGILLIVFFIWNDLKKTDIKIQNNSEEEVEFTAKYYNEETLNDMK
Ga0222718_101370702	3300021958	Estuarine Water	LFFGIFLSFTGFGIVPGILLIIIWVWNDLKTDIKNQNDLDGEIQSNSKYYNEDTLNEMK
Ga0222718_102528232	3300021958	Estuarine Water	VGIRGYILNKFWLFFGIFLSFTGFGTIPGILLVVIFVWSDLKKGSKNQNRIDDEIQFTSKYYNEDTLNEMK
Ga0222719_106841352	3300021964	Estuarine Water	NKFWLFFGIFLSFTGFGTIPGILLIVFFIWSDLKTDIKNQKSSQNEIGLAKQYYDEETLNDMR
(restricted) Ga0233428_10197182	3300022888	Seawater	LNKFWLFFGIFLSFTGFGTIPGILLVVIFVWSDLKKGNKNQNSSDDEIQFTSKYYNEDTLNEMK
(restricted) Ga0233428_11968631	3300022888	Seawater	LGIFLVFTGFGTMLGIMLIVFFIWDDLKSDIKSQNNSEDDVEFTAKYYNEDTLNDMK
(restricted) Ga0233430_11484841	3300022912	Seawater	IVGIRRHILNKFWLFFGIFLSFTGFGTIPGILLVVIFVWSDLKKGNKNQNSSDDEIQFTSKYYNEDTLNEMK
(restricted) Ga0233427_101835313	3300022933	Seawater	VNKFWLFFGIFLSFTGFGIVPGILLIIIWVWNDLKTDIKNQNDLDGEIQSDSKYYNEDTLNEMK
(restricted) Ga0233427_104096682	3300022933	Seawater	GIFLSFTGFGTIPGILLIVFFIWSDLKTDIKNQNSSQNEIESTAKYYNEDTLSDMK
(restricted) Ga0233440_11461082	3300024258	Seawater	ILNKFWLFFGIFLSFTGFGTIPGILLVVIFVWSDLKKGNKNQNSSDDEIQFTSKYYNEDTLNEMK
(restricted) Ga0233439_102018433	3300024261	Seawater	VNKFWLFFGIFLSFTGFGIVPGILLIIIWVWNDLKTDIKNQSDLDREIQSNSKYYNEDTLNEMK
(restricted) Ga0233449_12162362	3300024302	Seawater	LFFGIFLAFTGFGTIPGILLIVFFIWNDLKKDIKNQNNSDNEVEFTAKYYNEDTLNDMK
(restricted) Ga0233443_11720952	3300024324	Seawater	VGIRRHILNKFWLFFGIFLSFTGFGTIPGILLVVIFVWSDLKKGNKNQNSSDDEIQFTSKYYNEDTLNEMK
(restricted) Ga0233443_12474091	3300024324	Seawater	LNKFWFFLGIFLVFTGFGTIFGVLLIVFFIWDDLKSDIKSQNNSEDDVEFTAKYYNEDTLNDMK
Ga0209556_11194702	3300025547	Marine	LNKFWLFFGIFLAFTGFGTIPGILLIVFFIWNDLKKDIKNQNNSDNEVEFTAKYYNEDTLNDMK
Ga0209044_11991151	3300025709	Marine	KFWLFFGIFLSFTGFGTIPGILLIVFFIWSDLKTDIKNQNSSQNEIESTAKYYNEDTLSDMK
Ga0209252_10680982	3300025719	Marine	LNKFWLFFGIFLSFTGFGTIPGILLIVFFIWSDLKTDIKNQNSSQNEIESTAKYYNEDTLNEMK
Ga0209252_11757081	3300025719	Marine	LNKFWLFFGIFLSFTGFGTIPGILLIVFFIWSDLKTDIKNQNSSQNEIGLAKQHYDEET
Ga0209660_10466044	3300025722	Marine	LNKFWFFLGIFLVFTGFGTIFGILLIVFFIWDDLKSDIKSQNNSEDDVEFTAKYYTEDTLNDMK
Ga0209047_11702382	3300025727	Marine	LNKFWFFLGIFLVFTGFGTMLGIMLIVFFIWDDIKTDIKTQNNSEDDVEFTAKYYNEDTLNDMK
Ga0209631_1001776113	3300025890	Pelagic Marine	MNKFWLFLGIFLTFTGFGTILGILLIVFFIWSDLKTDIKNPNISQNEIEFAKQYYDEETLNDMK
Ga0209383_11167421	3300027672	Marine	LNKFWFFFGIFLSFTGFGTIPGILLIVFFIWNDLKTEIKHQNKHEDGIEFTAKYYNEDTLND
Ga0209383_12004792	3300027672	Marine	LNKFLFFLGIFLIFTGFGTIPGVLLLVFIIWNDLKTDIKNQNNSKDDFEFTAKYYNEDTLNDMK
Ga0209091_103452971	3300027801	Marine	LNKFWLFFGIFLTFTGFGTIPGVLLIIFFIWSDLKADIKNENDFTNAVEFDGKYYNENTLNDMK
Ga0209090_102052423	3300027813	Marine	MNKFLFFLGIFLVFTGFGTIPGVLLLVFIIWNDLKTDITNQNNSEDDVEFTAKYYDEDTLNDMK
Ga0209090_102093932	3300027813	Marine	LNKFLLFLSIFLVFTGFGTIPGVLLLVFIIWNDLKTEIKHQNKHEDGIEFTAKYYNEDTLNDMK
Ga0209035_100813915	3300027827	Marine	LNKFWLFFGIFLTFTGFGTIPGVLLIIFFIWSDLKSDIKNENDFANAVEFDPKYYNE
Ga0209035_105335892	3300027827	Marine	LFFGIFLAFTGFGTIPGILLIVFFIWNDLKAEIKNQNNSEEEVEFIAKYYNEETLNDMK
Ga0209403_100435332	3300027839	Marine	LNKFWFFLGIFLVFTGFGTILGILLIVLFIWNDLKADIKNQNNSDDEVEFTAKYYNEETLNDMK
Ga0209501_103560932	3300027844	Marine	VGIRRYILNKFWLFFGIFLAFTGFGTIPGILLIVFFIWNDLKTEIKNQNNSEDEVEFTAKYYNEETLNDMK
Ga0209402_106693672	3300027847	Marine	LFFGIFLAFTGFGTIPGILLIVFFIWNDLKTEIKNQNNSEDEVEFTAKYYNEETLNDMK
Ga0308022_10322632	3300031142	Marine	LNKFWLFFGIFLTFTGFGTIPGVLLIIFFIWSDLKSDIKNENDFANAVEFDPKYYNENTLKDMR
Ga0308022_10658811	3300031142	Marine	LFFLGIFLVFTGFGTIPGVLLLVFIIWNDLKTDIKNQNNSVDDVEFTAKYYNEDTLNDMR
Ga0308022_11800951	3300031142	Marine	MLQRKGLVIFLNKFWLFFGIFLTFTGFGTIPGVLLIIFFIWSDLKSDIKNEKDFANAVEFDPKYYNENTLKDMR
Ga0308025_11515401	3300031143	Marine	MNKFLFFLGIFLVFTGFGTIPGVLLLVFIIWNDLKTEIKNQNNSEDNVEFTAKYYNEDTLNDMR
Ga0308025_11983932	3300031143	Marine	VIFLNKFWLFFGIFLTFTGFGTIPGVLLIIFFIWSDLKSDIKNEKDFANAVEFDPKYYNENTLKDMR
Ga0308019_100282225	3300031598	Marine	LFFLGIFLVFTGFGTIHGVLLLVFIIWNDLKTDIKNQNNSVDDVKFTAKYYNEDTLNDMR
Ga0308019_100533553	3300031598	Marine	LFFLGIFLVFTGFGTIPGVLLLVFIIWNDLKTEIKNQNNSEDNVEFTAKYYNEDTLNDMR
Ga0308019_100945333	3300031598	Marine	MNKFLFFLGIFLVFTGFGTIPGVLLLVFIIWNDLKTDITNQNNSEDDIEFTSKYYDEDTLNDMK
Ga0308019_103108011	3300031598	Marine	LNKFWLFFGIFLTFTGFGTIPGVLLIIFFIWSDLKSDIKNENDFANAVEFDPKYYNENTL
Ga0315328_101025604	3300031757	Seawater	LFLGIFLSFTGFATIPGILLVVIFVWSDLKKGSKNQNRIDDEIQFTSKYYNEDTLNEMK
Ga0315328_102539103	3300031757	Seawater	LNKFWLFFGIFLAFTGFGTIPGILLIVFFIWNDLKKTDIKIQNNSEEEVEFTAKYYNKETLNDMK
Ga0315322_105025691	3300031766	Seawater	LNKFWLFLGIFLSFTGFATIPGILLVVIFVWSDLKKGSKNQNSIDDEIQFSSKYYNEDTLNEMK
Ga0315322_109761112	3300031766	Seawater	LNKFWLFFGIFLSFTGFGTIPGILLIVFFIWSDLKTDIKNQNSSQNEIESTAKYYNEDTL
Ga0315332_108012882	3300031773	Seawater	FLSFTGFGIVPGILLIIIWVWNDLKTDIKNQSDLDREIQSNSKYYNEDTLNEMK
Ga0315332_108921411	3300031773	Seawater	FGIFLSFTGFGTVPGILLVIIFVWSDLKKESKNQNISDDEIQFTSKYYNEDTLNEMK
Ga0315331_110730492	3300031774	Seawater	LNKFWLFFGIFLSFTGFGTIPGILLIVFFIWSDLKTDIKNPNSSQNEIGLAKQHYDEETLNDMR
Ga0315326_101335431	3300031775	Seawater	WLFFGIFLSFTGFGTIPGILLIVFFIWSDLKTDIKNQNSSQNEIESTAKYYNEDTLSDMK
Ga0315326_102383111	3300031775	Seawater	ALNKFWLFFGIFLSFTGFGTIPGILLIVFFIWSDLKTDIKNQNSSQNEIGLAKQHYDEETLNDMR
Ga0315326_107026701	3300031775	Seawater	FWFFLGIFLVFTGFGTIFGIMLIVFFIWDDLKSDIKSQNNSEDDVEFTAKYYNEDTLNDM
Ga0315326_109661212	3300031775	Seawater	LNKFWLFFGIFLAFTGFGTIPGILLIVFFIWNDLKTEIKNQNNSEDEVEFTAKYYNEETLNDMK
Ga0315326_110316981	3300031775	Seawater	LNKFWFFFGIFLVFTGFGTILGILLIVFFIWNDLKADIKNQNNSDDEVEFTAKYYNE
Ga0310121_101418982	3300031801	Marine	LGIFLVFTGFGTILGILLIVLFIWNDLKADIKNQNNSDDEVEFTAKYYNEETLNDMK
Ga0315316_100883926	3300032011	Seawater	LNKFWLFFGIFLSFTGFGTIPGILLIVFFIWSDLKTDIKNQNSSQNEIESTAKYYNEDTLSDMK
Ga0315316_105704241	3300032011	Seawater	LNKFWFFLGIFLVFTGFGTILGIMLIVFFIWDDIKTDIKSQNNSEDDVEFTAKYYNEDTLNDMK
Ga0315316_105770792	3300032011	Seawater	LNKFWLFLGIFLSFTGFATIPGILLVVIFVWSDLKKESKNQNSIDDEIQFTSKYYNEDTLNEMK
Ga0315316_106308182	3300032011	Seawater	VNKFWLFFGIFLSFTGFGIVPGILLIIIWVWNDLKTDIKNQNDLDGEIQSNSKYYNEDTLNEMK
Ga0315316_107166671	3300032011	Seawater	MNKFWLFLGIFLTFTGFGTILGILLIVFFIWSDLKTDIKSQNISQNEIEFAKQYYDEETLNDM
Ga0315316_107767542	3300032011	Seawater	LNKFWLFFGIFLSFTGFGTIPGILLIVFFIWSDLKTDMKNQNSSQNEIGLAKQHYDEETLNDMR
Ga0315327_102305382	3300032032	Seawater	LNKFWFFFGIFLVFTGFGTILGIMLIVFFIWNDLKADIKNQNNSKDEVEFTAKYYNEDTLNDMK
Ga0315327_102609112	3300032032	Seawater	LNKFWFFFGIFLVFTGFGTILGILLIVFFIWNDLKADIKNQNNSEDEVEFTAKYYNEETLNDMK
Ga0315327_105992071	3300032032	Seawater	FWFFLGIFLVFTGFGTMLGIMLIVFFIWDDIKTDIKSQNNSEDDVEFTAKYYNEDTLNDM
Ga0315327_107689692	3300032032	Seawater	KFWFFFGIFLVFTGFGTMLGIMLIVFFIWDDLKSDIKSQNNSEDDVEFTAKYYNEDTLNDMK
Ga0315315_101952562	3300032073	Seawater	LNKFWLFFGIFLSFTGFGTIPGILLIVFFIWSDLKTDIKNQNSSQNEIGLAKQHYDEETLNDMR
Ga0315321_106249072	3300032088	Seawater	LGIFLVFTGFGTILGIMLIVFFIWDDIKTDIKSQNNSEDDVEFTAKYYNEDTLNDMK
Ga0315334_106841602	3300032360	Seawater	LNKFWFFLGIFLVFTGFGTIFGIMLIVFFIWDDIKTDIKSQNNSEDDVEFTAKYYNEDTLNDMK
Ga0315334_117546982	3300032360	Seawater	LNKFWFFFGIFLVFTGFGTILGIMLIVFFIWNDLKADIKNQNNSDDEVEFTAKYYNEDTL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters