Metagenome / Metatranscriptome Family F092334

Basic Information
Family ID	F092334
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	58 residues
Representative Sequence	VVVIKPRKGGDGLKYTVPMSFMPKLGQINSTIQDPLGRYNAVMALPDLFTVEPVK
Number of Associated Samples	96
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.89 %
% of genes near scaffold ends (potentially truncated)	86.92 %
% of genes from short scaffolds (< 2000 bps)	94.39 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Most Common Taxonomy
Group	Unclassified (51.402 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.215 % of family members)
Environment Ontology (ENVO)	Unclassified (32.710 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.318 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.51% β-sheet: 13.25% Coil/Unstructured: 60.24%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF02562	PhoH	11.21
PF00072	Response_reg	9.35
PF08753	NikR_C	8.41
PF00158	Sigma54_activat	3.74
PF02663	FmdE	3.74
PF05119	Terminase_4	1.87
PF12172	DUF35_N	0.93
PF16868	NMT1_3	0.93
PF13561	adh_short_C2	0.93
PF01494	FAD_binding_3	0.93
PF16793	RepB_primase	0.93
PF03713	DUF305	0.93
PF04199	Cyclase	0.93
PF02954	HTH_8	0.93
PF00155	Aminotran_1_2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1702	Phosphate starvation-inducible protein PhoH, predicted ATPase	Signal transduction mechanisms [T]	11.21
COG1875	Predicted ribonuclease YlaK, contains NYN-type RNase and PhoH-family ATPase domains	General function prediction only [R]	11.21
COG0864	Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domain	Transcription [K]	8.41
COG2191	Formylmethanofuran dehydrogenase subunit E	Energy production and conversion [C]	3.74
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.87
COG3747	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	1.87
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.93
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.93
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.93
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.93
COG3544	Uncharacterized conserved protein, DUF305 family	Function unknown [S]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
All Organisms	root	All Organisms	48.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
cellular organisms	root	All Organisms → cellular organisms	48.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	34.58 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	25.23 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	7.48 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.48 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.67 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.80 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.93 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.48 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.74 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.80 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.93 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.48 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.80 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	1.87 %
unclassified Methylibium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium → unclassified Methylibium	0.93 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.93 %
Mesorhizobium australicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium australicum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.48 %
Bradyrhizobium sp. LTSP849	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP849	1.87 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.87 %
Bradyrhizobium sp. SRL28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	0.93 %
Methylibium sp. T29	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium → unclassified Methylibium → Methylibium sp. T29	0.93 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.93 %
Mesorhizobium australicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium australicum	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001686\|C688J18823_10068427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2462	Open in IMG/M
3300004156\|Ga0062589_101133487	All Organisms → cellular organisms → Bacteria → Proteobacteria	743	Open in IMG/M
3300004281\|Ga0066397_10006503	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300004480\|Ga0062592_100916982	Not Available	791	Open in IMG/M
3300005260\|Ga0074072_1134349	Not Available	610	Open in IMG/M
3300005330\|Ga0070690_100031999	Not Available	3281	Open in IMG/M
3300005330\|Ga0070690_101672089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP849	517	Open in IMG/M
3300005340\|Ga0070689_100571814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	976	Open in IMG/M
3300005343\|Ga0070687_100323760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	986	Open in IMG/M
3300005363\|Ga0008090_10008836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1512	Open in IMG/M
3300005548\|Ga0070665_101167116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	781	Open in IMG/M
3300005548\|Ga0070665_101790604	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300005616\|Ga0068852_102170818	Not Available	577	Open in IMG/M
3300005713\|Ga0066905_100754434	Not Available	840	Open in IMG/M
3300006048\|Ga0075363_100233824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1056	Open in IMG/M
3300006195\|Ga0075366_10704839	All Organisms → cellular organisms → Bacteria → Proteobacteria	627	Open in IMG/M
3300006195\|Ga0075366_10885942	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300006237\|Ga0097621_100793982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	877	Open in IMG/M
3300006358\|Ga0068871_100405156	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
3300006358\|Ga0068871_101693095	Not Available	600	Open in IMG/M
3300006844\|Ga0075428_101027592	Not Available	872	Open in IMG/M
3300009553\|Ga0105249_11837168	Not Available	679	Open in IMG/M
3300009792\|Ga0126374_10478301	Not Available	892	Open in IMG/M
3300010047\|Ga0126382_11284113	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300010373\|Ga0134128_11675445	Not Available	700	Open in IMG/M
3300010398\|Ga0126383_10589075	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300010399\|Ga0134127_12025244	Not Available	654	Open in IMG/M
3300010401\|Ga0134121_11670331	Not Available	659	Open in IMG/M
3300010403\|Ga0134123_10220460	Not Available	1629	Open in IMG/M
3300010868\|Ga0124844_1241136	Not Available	640	Open in IMG/M
3300010868\|Ga0124844_1242146	Not Available	638	Open in IMG/M
3300010868\|Ga0124844_1256982	Not Available	610	Open in IMG/M
3300011271\|Ga0137393_11657899	Not Available	528	Open in IMG/M
3300011406\|Ga0137454_1004461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium → unclassified Methylibium → Methylibium sp. T29	1376	Open in IMG/M
3300012360\|Ga0137375_11114568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	611	Open in IMG/M
3300012362\|Ga0137361_11154295	Not Available	696	Open in IMG/M
3300012912\|Ga0157306_10359887	Not Available	555	Open in IMG/M
3300012930\|Ga0137407_12423255	Not Available	502	Open in IMG/M
3300012960\|Ga0164301_10098017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1675	Open in IMG/M
3300012971\|Ga0126369_10785805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1034	Open in IMG/M
3300013105\|Ga0157369_11903820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	604	Open in IMG/M
3300013296\|Ga0157374_11332489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	740	Open in IMG/M
3300013306\|Ga0163162_12229821	Not Available	629	Open in IMG/M
3300013308\|Ga0157375_10979910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	986	Open in IMG/M
3300014157\|Ga0134078_10489855	Not Available	569	Open in IMG/M
3300014315\|Ga0075350_1146216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	593	Open in IMG/M
3300014326\|Ga0157380_11844724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	664	Open in IMG/M
3300014326\|Ga0157380_12960221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP849	541	Open in IMG/M
3300014497\|Ga0182008_10265468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	889	Open in IMG/M
3300014969\|Ga0157376_11552436	Not Available	696	Open in IMG/M
3300015201\|Ga0173478_10235012	All Organisms → cellular organisms → Bacteria → Proteobacteria	792	Open in IMG/M
3300015245\|Ga0137409_11157589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	614	Open in IMG/M
3300016270\|Ga0182036_10577690	Not Available	899	Open in IMG/M
3300016294\|Ga0182041_10647862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	932	Open in IMG/M
3300016341\|Ga0182035_11716824	Not Available	567	Open in IMG/M
3300016404\|Ga0182037_10972385	Not Available	739	Open in IMG/M
3300016422\|Ga0182039_11413610	Not Available	632	Open in IMG/M
3300018422\|Ga0190265_11738221	Not Available	733	Open in IMG/M
3300018476\|Ga0190274_12083238	Not Available	664	Open in IMG/M
3300018481\|Ga0190271_10232709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1862	Open in IMG/M
3300021560\|Ga0126371_11173964	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300025899\|Ga0207642_10156166	Not Available	1220	Open in IMG/M
3300025899\|Ga0207642_10278022	Not Available	962	Open in IMG/M
3300025908\|Ga0207643_10212391	Not Available	1181	Open in IMG/M
3300025930\|Ga0207701_10695904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	861	Open in IMG/M
3300025934\|Ga0207686_10602476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	865	Open in IMG/M
3300025935\|Ga0207709_10612112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	863	Open in IMG/M
3300025953\|Ga0210068_1028016	Not Available	830	Open in IMG/M
3300025981\|Ga0207640_11309764	Not Available	647	Open in IMG/M
3300026041\|Ga0207639_11021351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	775	Open in IMG/M
3300026861\|Ga0207503_1009452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	594	Open in IMG/M
3300027646\|Ga0209466_1066301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	728	Open in IMG/M
3300027876\|Ga0209974_10252739	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300028784\|Ga0307282_10027558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	2433	Open in IMG/M
3300028787\|Ga0307323_10001310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7877	Open in IMG/M
3300028880\|Ga0307300_10129623	Not Available	781	Open in IMG/M
3300028889\|Ga0247827_10748581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium australicum	642	Open in IMG/M
3300031544\|Ga0318534_10280613	Not Available	960	Open in IMG/M
3300031547\|Ga0310887_10589936	Not Available	680	Open in IMG/M
3300031564\|Ga0318573_10744517	Not Available	526	Open in IMG/M
3300031679\|Ga0318561_10670393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	570	Open in IMG/M
3300031680\|Ga0318574_10353180	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300031719\|Ga0306917_10762555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	759	Open in IMG/M
3300031719\|Ga0306917_10767165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	757	Open in IMG/M
3300031724\|Ga0318500_10470365	Not Available	630	Open in IMG/M
3300031740\|Ga0307468_101945002	Not Available	562	Open in IMG/M
3300031798\|Ga0318523_10294520	Not Available	810	Open in IMG/M
3300031835\|Ga0318517_10207628	Not Available	883	Open in IMG/M
3300031835\|Ga0318517_10270942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	767	Open in IMG/M
3300031847\|Ga0310907_10514344	Not Available	642	Open in IMG/M
3300031879\|Ga0306919_10279069	Not Available	1263	Open in IMG/M
3300031890\|Ga0306925_11204611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	759	Open in IMG/M
3300031912\|Ga0306921_11404910	Not Available	767	Open in IMG/M
3300031942\|Ga0310916_11655869	Not Available	518	Open in IMG/M
3300031954\|Ga0306926_12751691	Not Available	533	Open in IMG/M
3300031981\|Ga0318531_10175667	All Organisms → cellular organisms → Bacteria → Proteobacteria	963	Open in IMG/M
3300032043\|Ga0318556_10636055	Not Available	556	Open in IMG/M
3300032211\|Ga0310896_10233678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	922	Open in IMG/M
3300032782\|Ga0335082_11561744	Not Available	532	Open in IMG/M
3300032783\|Ga0335079_10958592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	875	Open in IMG/M
3300032893\|Ga0335069_12315477	Not Available	560	Open in IMG/M
3300032895\|Ga0335074_11123165	Not Available	674	Open in IMG/M
3300032895\|Ga0335074_11616411	All Organisms → cellular organisms → Bacteria → Proteobacteria	505	Open in IMG/M
3300033134\|Ga0335073_10803444	Not Available	1009	Open in IMG/M
3300033475\|Ga0310811_10236395	Not Available	2181	Open in IMG/M
3300034268\|Ga0372943_1198629	Not Available	508	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.77%
Host-Associated	Host-Associated	25.23%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.90%
Plants	Host-Associated → Plants	25.23%
Aquatic	Environmental → Aquatic	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.15%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.48%
Roots	Host-Associated → Plants → Roots	5.61%
Marine	Environmental → Aquatic → Marine	0.93%
Sediment	Environmental → Aquatic → Sediment	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.07%
Loam	Environmental → Terrestrial → Soil → Loam	10.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.28%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.54%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.80%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.87%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.28%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.48%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.61%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.80%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.80%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.35%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.61%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.80%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.87%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005260	Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011406	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT539_2	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014315	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025953	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026861	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-12 (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10119842	3300000580	Forest Soil	LAFVRLPLHLAVVIIKPRKGGEGLKYTVPMSVMPKLGQINSTIPNPLGRYDAVMAIQDLYTVEPSR*
C688J18823_100684271	3300001686	Soil	LIRPRTRGEGLKYTVPISFMPKLGQINSTIHDPLARYNAVMALPDLFTVEPVK*
Ga0062589_1011334871	3300004156	Soil	IRPRKGGDGLKYTVPISAMPALGRINSTIQDPLARYEAVMAITDLFTVEPIK*
Ga0066397_100065033	3300004281	Tropical Forest Soil	AVVIIKPRKGGEGLKYTVPMSVMPKLGQINSTIPNPLGRYDAVMAIQDLYTVEPSR*
Ga0062592_1009169821	3300004480	Soil	KPRKDGDGLKYSLPMSLMPKLGQINSTIQDPLARYHAVMALPDVFSVEPVK*
Ga0074072_11343491	3300005260	Soil	VVIIRSRRGGDGLRYTVPMSMMPKLGQINSTIQEALGRYNAVMAIDGLYSVEPVQ*
Ga0070690_1000319995	3300005330	Switchgrass Rhizosphere	AAEKSPPGTFAVVLIRPRQGGDGLKYTVPISFMPKLGQINSTVQDPLARYKAVMALPDLFTVERVK*
Ga0070690_1016720891	3300005330	Switchgrass Rhizosphere	TIRPRKGGDGLKYTVPISAMPALGRINSTIQDPLARYEAVMAITDLFTVEPIK*
Ga0070689_1005718142	3300005340	Switchgrass Rhizosphere	KGGDGLRYSVPNSFLPKLGQINSTIQDPLARFNAVMALPDLFTVESAK*
Ga0070687_1003237603	3300005343	Switchgrass Rhizosphere	LIRPRQGGDGLKYTVPISFMPKLGQINSTVQDPLARYKAVMALPDLFTVERVK*
Ga0008090_100088363	3300005363	Tropical Rainforest Soil	KGGEGLKYTVPMSVMPKLGQINSTIPNPLGRYDAVMAIQDLYTVEPSR*
Ga0070665_1011671161	3300005548	Switchgrass Rhizosphere	FAVVTIRPRTGGDGLKYTVPMSVMPTLGHVNSTIQDPLARYDAVMATTDLFTVEPVK*
Ga0070665_1017906041	3300005548	Switchgrass Rhizosphere	EKSPPGTFAVVMIRPRHGGDGLKYTVPMSMLPKLSQINSLIQNPRWRYDAVMAIADLYTVEELK*
Ga0068852_1021708181	3300005616	Corn Rhizosphere	GGDGLKYTVPIAFLPKLGQINGTIQDPLGRYNAVMALPDLFTVEPVQ*
Ga0066905_1007544341	3300005713	Tropical Forest Soil	IRPRKGGDGLKYTVPMYHMAKLVEINRTIQDPLARYNAVMGIGDLFVVEPVTK*
Ga0075363_1002338243	3300006048	Populus Endosphere	QVAAEKSPPGTFAVVSIRPRKGGDGLKYTVPMSFLPKLGQINSTIQDPLGRYNAVMALPDLFSVEPMK*
Ga0075366_107048392	3300006195	Populus Endosphere	FAVVTIRPRKGGEGLKYTVPMSVMPKLGQINSTIQNPRERYDAVMAIGDLYTVEAVK*
Ga0075366_108859421	3300006195	Populus Endosphere	PGQGSAQVAAEKSPPGTFAVVLIRPRKGGDGLKYTVPIAHLPKFGQINSTIPDPLTRFHAVMALPDLFTVEPLN*
Ga0097621_1007939821	3300006237	Miscanthus Rhizosphere	GTFAVVLIRPRKGGEGLKYTVPISFMPKLGQINSTIHDPLARYNAVMALPDLFTVEPVK*
Ga0068871_1004051563	3300006358	Miscanthus Rhizosphere	TFAVVVIRPRKGGDGLKYTVPISMLPKLGQINSSMQDPLARYNAVMAMPDLFTVEPAP*
Ga0068871_1016930951	3300006358	Miscanthus Rhizosphere	GGDGLKYTVPIAFLPKLGQINGAIQDPLGRYNAVMALPDLFTVEPVQ*
Ga0075428_1010275921	3300006844	Populus Rhizosphere	VAAEKSPPGTFAVMLIRRRVGGDGLKYTVPMPLMAKLGEINRNIQDPLQRYHAVMAIPDLFTVEPLAQ*
Ga0105249_118371682	3300009553	Switchgrass Rhizosphere	GTFAVVTIRPRTGGDGLKYTVPMSVMPTLGHVNSTIQDPLARYDAVMATTDLFTVEPVK*
Ga0126374_104783012	3300009792	Tropical Forest Soil	VVIIKPRKGGEGLKYTVPMSVMPKLGQINSTIPNPLVRYDAVMAIQDLYTVEPSR*
Ga0126382_112841132	3300010047	Tropical Forest Soil	VVVIKPRKGGDGLKYTVPMSFLPKLGQINSTIQDPLGRYHAVMALPDLFTVEPVK*
Ga0134128_116754451	3300010373	Terrestrial Soil	QGTLHIAPEKSSPGTFAVVVIKPRKGGDGLKYTVPMSAMPKLGQINTAIQDPLGRYNAVMAIPDLFTVETVK*
Ga0126383_105890751	3300010398	Tropical Forest Soil	PPGTFAVVVIRPRKGGEGLKYTVPMSHMANLGEINGTIQDPLARYEAVMGIADLFVVEPVAK*
Ga0134127_120252442	3300010399	Terrestrial Soil	AVVVIRLHKGGDGLKYTVPIAFLPKLGQINGTIQDPLGRYNAVMALPDLFTVEPVQ*
Ga0134121_116703312	3300010401	Terrestrial Soil	VIRPRKGGDGLKYTVPIAFLPKLGQINGTIQDPLGRYNAVMALPDLFTVEPVQ*
Ga0134123_102204601	3300010403	Terrestrial Soil	GTLHVAAEKSPPGTFAVVVIRPRKGGDGLRYSVPISFLPKLGQINSTIQDPLARFNAVMALPDLFTVESAK*
Ga0124844_12411361	3300010868	Tropical Forest Soil	GKVAARHVFAVAVIRRRTGGDGLRYSVPMALMAKLGEINRTVTDPLARYHAVMAIPDLFSVEPVKQP*
Ga0124844_12421463	3300010868	Tropical Forest Soil	EKSPPGTFSVAVIRRRTGGDGLRYSVPMALMAKLGEINRTVTDPLARYHAVMAIPDLFSVEPVKQP*
Ga0124844_12569821	3300010868	Tropical Forest Soil	VAVIRRRTGGDGLRYSVPMALMAKLGEINRTVTDPLARYHAVMAIPDLFSVEPVKQP*
Ga0137393_116578991	3300011271	Vadose Zone Soil	SEKSPPGTFAAVVIKARKGGDGLKYIVPMSFMPKLGQINSTIQEPLGRYNAVMALPDLFTVEVVK*
Ga0137454_10044611	3300011406	Soil	KGGEGLKYTVPISWLPKLGEINRTIQDPLARYDAVMKAADLFTVEPAGQ*
Ga0137375_111145681	3300012360	Vadose Zone Soil	VVVIRPRKGGDGLKYTVPMSHMAKLGEINRTIQDPLARYDAVMGIGDLFVVEPIAK*
Ga0137361_111542951	3300012362	Vadose Zone Soil	TLAVVVIRPRQGGDELKYTVPISFMPKLGQINSTIQDPLERYKAVMALPDLFTVEPVQ*
Ga0157306_103598871	3300012912	Soil	TFAVVVIRPRKGGDGLRYSVPNSFLPKLGQINSTIQDPLARFNAVMALPDLFTVEPAK*
Ga0137407_124232551	3300012930	Vadose Zone Soil	RKGGDGLKYTVPMSHLAKLGEINRTIQDPLARYDAVMGMGDLFVVEPIAK*
Ga0164301_100980171	3300012960	Soil	IAAEKSPPGTFAVVVIRPRKGGDGLKYTVPIVFLPKLGQINSTIQDPLGRYNAVMALPDLFTVELVK*
Ga0126369_107858052	3300012971	Tropical Forest Soil	VVVIKPRKGGDGLKYTVPMSFLPKLGQINSTIQDPLGRYKAVMALPDLFTVEPVK*
Ga0157369_119038201	3300013105	Corn Rhizosphere	CPCAADGVSLAVYASAGQGTLHIAPEKSPPGSFAMVVIRPRKGGDGLKYTVPMSVMPKLGQINSTIQDPLGRYDAVMAIPDLYTVEAVK*
Ga0157374_113324891	3300013296	Miscanthus Rhizosphere	RKGGEGLKYTVPISFMPKLGQINSTIHDPLARYNAVMALPDLFTVEPVKSSAPQTHN*
Ga0163162_122298212	3300013306	Switchgrass Rhizosphere	RKGGDGLKYTVPIAFLPKLGQINGTIQDPLGRYNAVMALPDLFTVEPVQ*
Ga0157375_109799103	3300013308	Miscanthus Rhizosphere	MVFIRPRKGGDGLKYTMMPKLGQINSTIQEPLGHYNAVMGLPDLFTVEPVK*
Ga0134078_104898552	3300014157	Grasslands Soil	SVQVEAEKSPSGTFAVVVIRPRKGGDGLKYTVPMSHMAKLGEINRTIQDPLARYDAVMGIGDLFVVEPIAK*
Ga0075350_11462161	3300014315	Natural And Restored Wetlands	AEKSPPGTFAVVVIRPRKGGDGLRYTVPMSVMPKLGQINKTIQDPLARYSAVTALGEFFTVEPVK*
Ga0157380_118447242	3300014326	Switchgrass Rhizosphere	MVFIRPRKGGDGLKYTMPISFMPKLGQINSTIQEPLGHYNNAVMGLPDLFTVEPVK*
Ga0157380_129602212	3300014326	Switchgrass Rhizosphere	LQVAAEKSPPGTFAVVTIRPRKGGDGLKYTVPISAMPALGRINSTIQDPLARYEAVMAITDLFTVEPIK*
Ga0182008_102654681	3300014497	Rhizosphere	QGTLQVAVEKSPPATFAAVVIRPRKGGDGLKYTVPITLLPKLGQINSTIQDPLTRYNAVMALPDLFTVERVK*
Ga0157376_115524362	3300014969	Miscanthus Rhizosphere	GLKYTVPAALMPKLAEINRTMILPLDRYTALMGIPDLFTVEPVK*
Ga0173478_102350121	3300015201	Soil	GGDGLKYTVPISAMPALGRINSTIQDPLARYEAVMAITDLFTVEPIK*
Ga0137409_111575892	3300015245	Vadose Zone Soil	EKSPPGTFAVVLIRPRKGGDGLKYTVPMSMLPKLGEINRTIQDPLARYNAVMAIDGLFTVEPCAQLCGALLAGHKN*
Ga0182036_105776901	3300016270	Soil	RPRKGGEGLKYTVPMSHMAKLGEINRTIQDPLARYNAVMGIGDLFVVEPVAK
Ga0182041_106478621	3300016294	Soil	IKPRKGGDGLKYTVPMSLMPKLVQINSTIQDPLGRYNAVMALPDPFTVEPVN
Ga0182035_117168241	3300016341	Soil	TFAVVVIRPRKGGEGLKYTVPMSHMAKLGEINRTIQDPLARYNAVMGIGDLFVVEAVK
Ga0182037_109723851	3300016404	Soil	VIRPRKGGEGLKYTVPMSHMAKLGEINRTIQDPLARYNAVMGIGDLFVVEPVAK
Ga0182039_114136102	3300016422	Soil	GGEGLKYTVPMSHMAKLGEINRTIQDPLARYNAVMGIGDLFVVEPVAK
Ga0190265_117382211	3300018422	Soil	KSPPGTFAVVTIRPRKGGDGLKYTVPMSVMPKLGQINSTIQDPLARYNAVMALSDLFTVEPAK
Ga0190274_120832381	3300018476	Soil	AEKSPPGTFAVVSIRPRKGGDGLRFTAPISFMPKLGRINSTIQYPLERYNAVMALPALLTVEPLK
Ga0190271_102327091	3300018481	Soil	QVAAEKSPPGTFAVVVIRPRKGGDGLKYTVPISQLPKLGQINSTIQDPLARFNAVMVLPDLFTVEPVK
Ga0126371_111739642	3300021560	Tropical Forest Soil	VVVIKPRKGGDGLKYTVPMSFLPKLGQINGTIQDPLGRYKAVMALPDLFTVEPVK
Ga0207642_101561661	3300025899	Miscanthus Rhizosphere	IRPRQGGDGLKYTVPISFMPKLGQINSTVQDPLARYKAVMALPDLFTVERVK
Ga0207642_102780223	3300025899	Miscanthus Rhizosphere	TLQLASERSPPGSFAMVVIKPRKGGDGLKYTVPMSFMPKLSQINSTIQDMVERYKAVMALPDLFEVEAAK
Ga0207643_102123912	3300025908	Miscanthus Rhizosphere	QGGDGLKYTVPISFMPKLGQINSTVQDPLARYKAVMALPDLFTVERVK
Ga0207701_106959042	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	KGGDGLRYSVPNSFLPKLGQINSTIQDPLARFNAVMALPDLFTVESAK
Ga0207686_106024762	3300025934	Miscanthus Rhizosphere	KGGEGLKYTVPISFMPKLGQINSTIHDPLARYNAVMALPDLFTVEPVK
Ga0207709_106121122	3300025935	Miscanthus Rhizosphere	MVFIRPRKGGDGLKYTMPISFMPKLGQINSTIQEPLGHYNNAVMGLPDLFTVEPVK
Ga0210068_10280163	3300025953	Natural And Restored Wetlands	IRPRKGGDGLRYTVPMSVMPKLGQINKTIQDPLARYSAVTALGEFFTVEPVK
Ga0207640_113097642	3300025981	Corn Rhizosphere	GGDGLKYTVPIAFMPKLGQINGAIQDPLGRYNAVMALPDLFTVEPVQ
Ga0207639_110213511	3300026041	Corn Rhizosphere	AADGVSLAVYASAGQGTLHIAPEKSPPGSFAMVVIRPRKGGDGLKYTVPMSVMPKLGQINSTIQDPLGRYDAVMAIPDLYTVEAVK
Ga0207503_10094522	3300026861	Soil	GQGTLHIAPEKSSPGTFAVVVIKPRKGGDGLKYTVPMSAMPKLGQINTAIQDPLGRYNAVMAIPDLFTVETVK
Ga0209466_10663011	3300027646	Tropical Forest Soil	AVVIIKPRKGGEGLKYTVPMSVMPKLGQINSTIPNPLGRYDAVMAIQDLYTVEPSR
Ga0209974_102527391	3300027876	Arabidopsis Thaliana Rhizosphere	QGTLHVAAEKSPPGTFAVVVIRPRKGGDGLRYSVPNSFLPKLGQINSTIQDPLARFNAVMALPDLFTVESAK
Ga0307282_100275581	3300028784	Soil	CREIATGHFVIRPRKGGDGLKYTVPIAHIAKLGEINRTIQEPLARYDAVKSIGDLLVVEPVTK
Ga0307323_100013106	3300028787	Soil	KGGDGLKYTVPIAHIAKLGEINRTIQEPLARYDAVKSIGDLLVVEPVTK
Ga0307300_101296231	3300028880	Soil	KGGDGLKYTVPIAHIAKLGEINRTIQEPLARYDAVKSIGDLFVVEPVTK
Ga0247827_107485811	3300028889	Soil	GSAQVAAEKSPPGTFAVVMIRPRKGGDGLKYTVPISQLPKLGQINSTIQDPLARFNAVMVLPDLFTVEPVK
Ga0318534_102806132	3300031544	Soil	EKSPPGTFAVVVIRPRKGGERLKYTVPMSHMAKLGEINRTIQDPLARYNAVMGIGDLFVVEPVAK
Ga0310887_105899361	3300031547	Soil	EKSPPGTFAVAVIQRRTGGDALRYTVPMVLMAKLGEINRTITNPLARYHAVMAIPDLFSVEPVKQP
Ga0318573_107445171	3300031564	Soil	LPLHLAVVIIKPRKGGEGLKYTVPMSVMPKLGQINSTIPNPLGRYDAVMAIQDLYTVEPS
Ga0318561_106703931	3300031679	Soil	GTLQIAPEKSAPGTFAVVVIKPRKGGDGLKYTVPMSLMPKLVQINSTIQDPLGRYNAVMALPDPFTVEPVN
Ga0318574_103531803	3300031680	Soil	VVVIRPRKGGEGLKYTVPMSHMAKLSEINRAIQDPLARYNAVMGIDDLFVVEPVAK
Ga0306917_107625553	3300031719	Soil	FAVVVIRPRKGGEGLKYTVPMSHMAQLSEINRAIQDPLARYNAVMGIDDLFVVEPVAK
Ga0306917_107671652	3300031719	Soil	PRKGGEGLKYTVPMSHMAKLGEINRTIQDPLARYNAVMGIDDLFVVEPVAK
Ga0318500_104703651	3300031724	Soil	VVVIKPRKGGDGLKYTVPMSFMPKLGQINSTIQDPLGRYNAVMALPDLFTVEPVK
Ga0307468_1019450021	3300031740	Hardwood Forest Soil	RYTVPAALMPKLVEINRTTTVPLDRYNAVMGMPDLFTVEPVK
Ga0318523_102945202	3300031798	Soil	VVIRPRKGGERLKYTVPMSHMAKLGEINRTIQDPLARYNAVMGIGDLFVVEPVAK
Ga0318517_102076281	3300031835	Soil	PGTFAVVVIRPRKGGEGLKYTVPMSHMAKLGEINRTIQDPLARYNAVMGIGDLFVVEPVA
Ga0318517_102709423	3300031835	Soil	GTFAVVVIRPRKGGEGLKYTVPMSHMAKLSEINRAIQDPLARYNAVMGIDDLFVVEPVAK
Ga0310907_105143441	3300031847	Soil	VVIIRPRKGGDGLQYTVPMSVMPKLGEINKTMQNPMARYNAVMALGDFFTVEAAR
Ga0306919_102790692	3300031879	Soil	VVVIRPRKGGEGLKYTVPMSHMAQLSEINRAIQDPLARYNAVMGIDDLFVVEPVAK
Ga0306925_112046111	3300031890	Soil	VIKPRKGGDGFKYTVPISFMTQLGQINSTIQDPLGRYSAVMALPDLFAVEPVK
Ga0306921_114049101	3300031912	Soil	GGEGLKYTVPMSHMAKLGEINRAIQDPLARYNAVMGIGDLFVVEPVAK
Ga0310916_116558691	3300031942	Soil	FAVVVIRPRKGGEGLKYTVPMSHMAKLGEINRAIQDPLARYNAVMGIGDLFVVEPVAK
Ga0306926_127516911	3300031954	Soil	VVVIRPRKGGEGLKYTVPMSHMAKLGEINRTIQDPLARYNAVMGIDDLFVVEPVAK
Ga0318531_101756672	3300031981	Soil	VVVIKPRKGGDGLKYTVPMSFMPKLGQINSTIQDPLGRYNAVMALPDRPKP
Ga0318556_106360551	3300032043	Soil	VVIIKPRKGGEGLKYTVPMSVMPKLGQINSTIPNPLGRYDAVMAIQDLYTVEPSR
Ga0310896_102336782	3300032211	Soil	GDGLKYTVPISFMPKLGQINSTVQDPLARYKAVMALPDLFTVERVK
Ga0335082_115617441	3300032782	Soil	SPPGTFAVVVIRPRKGGQGLKYTLPMSLMSKLGEINKTIQDPMGRYNAVMALPEIFSVSPEK
Ga0335079_109585921	3300032783	Soil	GGVGLKYTVPMSVMPKLDEVNRTIQDPLARYNAVMAIPDLFTVEAAN
Ga0335069_123154771	3300032893	Soil	GGEGLKYTVPMSLMPKLGEINKTIQDPMGRYNAVMALPELFSVSLEK
Ga0335074_111231651	3300032895	Soil	APEKSPADTFAVVVIRPRNGSAGFKYTVPKSIMGKLDDINKTVQDPLGRYNAVMALPNMFTVAPVQ
Ga0335074_116164112	3300032895	Soil	KIAPEKSPSDTFAVVVIRPRSGGAGLKYTVPKSIMAKLDEINNTIQDPLGRYTAVIALPNIFSVEPVK
Ga0335073_108034443	3300033134	Soil	VVVIRPRNGGGGFKYTVPKSIMGKLDDINKTVQDPLGRYNAVMALPNMFTVAPVQ
Ga0310811_102363953	3300033475	Soil	KSPPGTFALVVIKPRKGGDGLKYTVPMSVMASLGRINNTIQDPIGRYNAVMAIPDLYSVEPAK
Ga0372943_1198629_341_508	3300034268	Soil	IRPRKGGDGLKYTVPISFLPKLGQINSTIQDPLARYNAVMALPDLFTVEPVKSPR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092334

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


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