NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F092318

Metagenome / Metatranscriptome Family F092318

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F092318
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 111 residues
Representative Sequence VTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAADSLRADGL
Number of Associated Samples 96
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 3.74 %
% of genes near scaffold ends (potentially truncated) 57.01 %
% of genes from short scaffolds (< 2000 bps) 85.05 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (59.813 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(11.215 % of family members)
Environment Ontology (ENVO) Unclassified
(36.449 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(62.617 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 35.07%    β-sheet: 11.94%    Coil/Unstructured: 52.99%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.46
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF11238DUF3039 26.17
PF01381HTH_3 20.56
PF11298DUF3099 11.21
PF03631Virul_fac_BrkB 5.61
PF00106adh_short 0.93
PF00425Chorismate_bind 0.93
PF00313CSD 0.93
PF05995CDO_I 0.93
PF12844HTH_19 0.93
PF05175MTS 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG1295Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)Function unknown [S] 5.61
COG5553Predicted metal-dependent enzyme of the double-stranded beta helix superfamilyGeneral function prediction only [R] 0.93


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms59.81 %
UnclassifiedrootN/A40.19 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2199352024|deeps__Contig_150604Not Available769Open in IMG/M
3300000956|JGI10216J12902_110625800Not Available612Open in IMG/M
3300001915|JGI24741J21665_1025566All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia902Open in IMG/M
3300002155|JGI24033J26618_1034950All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia686Open in IMG/M
3300004479|Ga0062595_101552674Not Available614Open in IMG/M
3300005093|Ga0062594_100754325All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia890Open in IMG/M
3300005329|Ga0070683_101422278Not Available666Open in IMG/M
3300005329|Ga0070683_101634566Not Available619Open in IMG/M
3300005329|Ga0070683_101962137Not Available562Open in IMG/M
3300005332|Ga0066388_102666702All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia911Open in IMG/M
3300005336|Ga0070680_100286759All Organisms → cellular organisms → Bacteria1395Open in IMG/M
3300005337|Ga0070682_100483445All Organisms → cellular organisms → Bacteria956Open in IMG/M
3300005337|Ga0070682_102062748All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. DC12502Open in IMG/M
3300005338|Ga0068868_101420785All Organisms → cellular organisms → Bacteria648Open in IMG/M
3300005341|Ga0070691_10022419All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2929Open in IMG/M
3300005355|Ga0070671_102045446Not Available510Open in IMG/M
3300005434|Ga0070709_10072866All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2222Open in IMG/M
3300005439|Ga0070711_101428765All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300005444|Ga0070694_101439410All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300005466|Ga0070685_10055945All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2293Open in IMG/M
3300005535|Ga0070684_101584827Not Available617Open in IMG/M
3300005546|Ga0070696_100315739All Organisms → cellular organisms → Bacteria1201Open in IMG/M
3300005547|Ga0070693_101200657Not Available583Open in IMG/M
3300005577|Ga0068857_100510087All Organisms → cellular organisms → Bacteria1129Open in IMG/M
3300005983|Ga0081540_1165879All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales849Open in IMG/M
3300006196|Ga0075422_10462914All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia saprophytica570Open in IMG/M
3300006844|Ga0075428_102398993All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia542Open in IMG/M
3300006845|Ga0075421_100285064All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2013Open in IMG/M
3300006880|Ga0075429_100127177All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2228Open in IMG/M
3300006881|Ga0068865_100197696All Organisms → cellular organisms → Bacteria1559Open in IMG/M
3300006914|Ga0075436_101418868All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia saprophytica526Open in IMG/M
3300006954|Ga0079219_10003808All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae4358Open in IMG/M
3300006969|Ga0075419_10160680All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1473Open in IMG/M
3300009100|Ga0075418_10250125All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1888Open in IMG/M
3300009156|Ga0111538_10053528All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae5164Open in IMG/M
3300009174|Ga0105241_10285153All Organisms → cellular organisms → Bacteria1412Open in IMG/M
3300009553|Ga0105249_10658058Not Available1105Open in IMG/M
3300009789|Ga0126307_11481322All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium550Open in IMG/M
3300010036|Ga0126305_10036524All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2716Open in IMG/M
3300010037|Ga0126304_10370218Not Available954Open in IMG/M
3300010037|Ga0126304_10888670All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium606Open in IMG/M
3300010042|Ga0126314_10050248All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2705Open in IMG/M
3300010045|Ga0126311_10672523All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium826Open in IMG/M
3300010045|Ga0126311_10974621All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia692Open in IMG/M
3300010045|Ga0126311_11546901Not Available557Open in IMG/M
3300010166|Ga0126306_10199268All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1511Open in IMG/M
3300010166|Ga0126306_11897422Not Available500Open in IMG/M
3300010373|Ga0134128_11033313Not Available908Open in IMG/M
3300012212|Ga0150985_103302299All Organisms → cellular organisms → Bacteria1234Open in IMG/M
3300012491|Ga0157329_1037819Not Available529Open in IMG/M
3300012511|Ga0157332_1084355Not Available517Open in IMG/M
3300013104|Ga0157370_11710914Not Available565Open in IMG/M
3300013308|Ga0157375_10390604All Organisms → cellular organisms → Bacteria1558Open in IMG/M
3300014325|Ga0163163_12828729Not Available541Open in IMG/M
3300014487|Ga0182000_10066891Not Available1123Open in IMG/M
3300014487|Ga0182000_10203117Not Available761Open in IMG/M
3300014487|Ga0182000_10263649Not Available698Open in IMG/M
3300014487|Ga0182000_10277259Not Available687Open in IMG/M
3300015372|Ga0132256_100890485Not Available1006Open in IMG/M
3300015373|Ga0132257_101506515Not Available858Open in IMG/M
3300015374|Ga0132255_102796132Not Available746Open in IMG/M
3300017792|Ga0163161_10922833Not Available741Open in IMG/M
3300018432|Ga0190275_12296181All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia618Open in IMG/M
3300018866|Ga0193613_1041029All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1088Open in IMG/M
3300020069|Ga0197907_10006412All Organisms → cellular organisms → Bacteria1657Open in IMG/M
3300020070|Ga0206356_10991093Not Available556Open in IMG/M
3300020070|Ga0206356_11139843All Organisms → cellular organisms → Bacteria1080Open in IMG/M
3300020078|Ga0206352_10255809All Organisms → cellular organisms → Bacteria1099Open in IMG/M
3300020080|Ga0206350_10106333All Organisms → cellular organisms → Bacteria1281Open in IMG/M
3300020081|Ga0206354_11469042All Organisms → cellular organisms → Bacteria1689Open in IMG/M
3300020082|Ga0206353_11675803All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium735Open in IMG/M
3300020610|Ga0154015_1599166Not Available751Open in IMG/M
3300022467|Ga0224712_10587740Not Available543Open in IMG/M
3300022694|Ga0222623_10342364Not Available572Open in IMG/M
3300022756|Ga0222622_10081244All Organisms → cellular organisms → Bacteria1939Open in IMG/M
3300025903|Ga0207680_10456544All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium907Open in IMG/M
3300025906|Ga0207699_10073424All Organisms → cellular organisms → Bacteria2098Open in IMG/M
3300025911|Ga0207654_10212706All Organisms → cellular organisms → Bacteria1278Open in IMG/M
3300025916|Ga0207663_11155944Not Available623Open in IMG/M
3300025919|Ga0207657_10037818All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae4305Open in IMG/M
3300025927|Ga0207687_10015527All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4995Open in IMG/M
3300025932|Ga0207690_11774849Not Available515Open in IMG/M
3300025935|Ga0207709_10945316All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium702Open in IMG/M
3300025938|Ga0207704_10505683All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium975Open in IMG/M
3300025941|Ga0207711_10088305All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2722Open in IMG/M
3300025944|Ga0207661_10025081All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4528Open in IMG/M
3300025961|Ga0207712_10453003Not Available1088Open in IMG/M
3300025986|Ga0207658_10778246Not Available868Open in IMG/M
3300026088|Ga0207641_10716784Not Available986Open in IMG/M
3300026089|Ga0207648_10360650All Organisms → cellular organisms → Bacteria1311Open in IMG/M
3300027809|Ga0209574_10303183Not Available545Open in IMG/M
3300027909|Ga0209382_10275519All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1903Open in IMG/M
3300028707|Ga0307291_1145915Not Available602Open in IMG/M
3300028708|Ga0307295_10115606Not Available730Open in IMG/M
3300028716|Ga0307311_10107264Not Available784Open in IMG/M
3300028755|Ga0307316_10165859Not Available790Open in IMG/M
3300028768|Ga0307280_10142519All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium823Open in IMG/M
3300028793|Ga0307299_10321674Not Available581Open in IMG/M
3300028796|Ga0307287_10189718All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium781Open in IMG/M
3300028814|Ga0307302_10279953Not Available819Open in IMG/M
3300028824|Ga0307310_10270978Not Available820Open in IMG/M
3300028885|Ga0307304_10477221All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia570Open in IMG/M
3300030336|Ga0247826_10290670All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium1167Open in IMG/M
3300030510|Ga0268243_1042594All Organisms → cellular organisms → Bacteria967Open in IMG/M
3300031473|Ga0272434_1020924All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria5979Open in IMG/M
3300031938|Ga0308175_100000781All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria21111Open in IMG/M
3300034000|Ga0334918_004680All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1847Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil11.21%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil9.35%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere8.41%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere8.41%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere7.48%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere7.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.61%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.74%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.80%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.87%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.87%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.87%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.87%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.87%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.93%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.93%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.93%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.93%
Hypolithic BiocrustEnvironmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust0.93%
SoilEnvironmental → Terrestrial → Soil → Sand → Desert → Soil0.93%
RockEnvironmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock0.93%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.93%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.93%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.93%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.93%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.93%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave0.93%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2199352024Bare-fallow DEEP SOILEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001915Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7Host-AssociatedOpen in IMG/M
3300002155Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7Host-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005983Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009789Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28EnvironmentalOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010037Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25EnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010166Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012491Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610Host-AssociatedOpen in IMG/M
3300012511Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10EnvironmentalOpen in IMG/M
3300013104Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014487Bulk soil microbial communities from Mexico - Magueyal (Ma) metaGEnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018432Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 TEnvironmentalOpen in IMG/M
3300018866Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 9hrs v1EnvironmentalOpen in IMG/M
3300020069Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020070Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020080Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020081Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020082Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020610Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022467Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022694Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coexEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027809Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)Host-AssociatedOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028707Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148EnvironmentalOpen in IMG/M
3300028708Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152EnvironmentalOpen in IMG/M
3300028716Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198EnvironmentalOpen in IMG/M
3300028755Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356EnvironmentalOpen in IMG/M
3300028768Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119EnvironmentalOpen in IMG/M
3300028793Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159EnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028824Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300030510Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)EnvironmentalOpen in IMG/M
3300031473Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nordEnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300034000Biocrust microbial communities from Mojave Desert, California, United States - 14HMCEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
deeps_027653502199352024SoilVTVEHLRPRDFRTYPASDSHRWLVEDVVDVSVDDERTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAA
JGI10216J12902_11062580013300000956SoilPGAPACSLSVTVEHLHPRELRSFPEPPDARRWLVEDVVDVSVDGDGTWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAADSLRADGL*
JGI24741J21665_102556623300001915Corn RhizosphereVTVEHLHPGELGSFPEPPDARRWLVEGVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
JGI24033J26618_103495013300002155Corn, Switchgrass And Miscanthus RhizosphereVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEA
Ga0062595_10155267413300004479SoilGHLPGAPACSLSVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
Ga0062594_10075432523300005093SoilVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
Ga0070683_10142227813300005329Corn RhizosphereRWCHSLRPALPPVGEFRRTAGHLPGAPACSLSVTVEHLHPRELRSFPEPPDPHRWLVEGVVDVSVDGDGSWDPDEGGPAPAVVLRMPPYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARVADSLRAGAS*
Ga0070683_10163456613300005329Corn RhizosphereAGHLPGAPACSLSVTVEHLHPGELGSFPEPPDARRWLVEGVVDVSVDGDGPWDPDEDGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGVLYEAARAADSMRADGL*
Ga0070683_10196213713300005329Corn RhizosphereAGHLPGAPACSLSVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
Ga0066388_10266670213300005332Tropical Forest SoilVTVEHLRPRELRSFPEPSDTRRWIVEGVVDVSVDDNGTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLMESARGGDERDLAGVLYEAARAADGLRADAS*
Ga0070680_10028675913300005336Corn RhizosphereRWCHSLRPALPPVGEFRRTAGHLPGAPACSLSVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
Ga0070682_10048344513300005337Corn RhizosphereVTVEHLRPRDFRTCPASDSHRWLVEDVVDVSVDDEGTWDPEEGGPAPAVVLRMPSYVARHLACLLDDWSTIGRLLESARGGDERDLAGALYEAAQAADALRADAS*
Ga0070682_10206274813300005337Corn RhizosphereCHSLRPALPPVGEFRRTAGHLPGAPACSLSVTVEHLHPRELRSFPEPPDPHRWLVEGVVDVSVDGDGSWDPDEGGPAPAVVLRMPPYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARVADSLRAGAS*
Ga0068868_10142078513300005338Miscanthus RhizospherePGAPACSLSVTVEHLRPREIRSFPEPPDTRRWLVEDVVVVSVDDDGTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARTADSMRAGAS*
Ga0070691_1002241953300005341Corn, Switchgrass And Miscanthus RhizosphereVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARVADSLRAGAS*
Ga0070671_10204544613300005355Switchgrass RhizospherePGAPACSLSVTVEHLRPRDFRTCPASDSHRWLVEDVVDVSVDDEGTWDPEEGGPAPAVVLRMPSYVARHLACLLDDWSTIGRLLESARGGDERDLAGALYEAAQAADALRADAS*
Ga0070709_1007286643300005434Corn, Switchgrass And Miscanthus RhizosphereVTVEHLRPRDFRTYPASDSHRWLVEDVVDVSVDDEGTWDPEEGGPAPAVVLRMPSYVARHLACLLDDWSTIGRLLESARGGDERDLAGALYEAAQAADALRADAS*
Ga0070711_10142876523300005439Corn, Switchgrass And Miscanthus RhizospherePASDSHRWLVEDVVDVSVDDEGTWDPEEGGPAPAVVLRMPSYVARHLACLLDDWSTIGRLLESARGGDERDLAGALYEAAQAADALRADAS*
Ga0070694_10143941013300005444Corn, Switchgrass And Miscanthus RhizospherePEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPPYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
Ga0070685_1005594543300005466Switchgrass RhizosphereVTVEHLHPGELGSLPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
Ga0070684_10158482713300005535Corn RhizosphereRWCHSLRPALPPVGEFRRTAGHLPGAPACSLSVTVEHLHPRELRSFPEPPDPHRWLVEGVVDVSVDGDGSWDPDEGGPAPAVVLRMPPYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAADSMRADGL*
Ga0070696_10031573913300005546Corn, Switchgrass And Miscanthus RhizospherePACSLSVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
Ga0070693_10120065723300005547Corn, Switchgrass And Miscanthus RhizosphereVGEFRRTAGHLPGAPACSLSVTVEHLHPRELRSFPEPPDPHRWLVEGVVDVSVDGDGSWDPDEGGPAPAVVLRMPPYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARVADSLRAGAS*
Ga0068857_10051008733300005577Corn RhizosphereLPGAPACSLSVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
Ga0081540_116587933300005983Tabebuia Heterophylla RhizosphereVTVEHLRPREFRSFPEPPDARRWLVEDVVDVSVDGDGTWDPDEDGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLA
Ga0075422_1046291413300006196Populus RhizospherePGVCGVVIPRWCHSLRPALPPVGEFRRTAGHLPGAPACSLSVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
Ga0075428_10239899323300006844Populus RhizosphereVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGAL
Ga0075421_10028506423300006845Populus RhizosphereVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAADSLRADGL*
Ga0075429_10012717733300006880Populus RhizosphereVTVEHLHPGELGSFPEPPDARRWLVEGVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAADSLRADGL*
Ga0068865_10019769633300006881Miscanthus RhizosphereAMPGPGVCGVVIPRWCHSLRPALPPVGEFRRTAGHLPGAPACSLSVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
Ga0075436_10141886813300006914Populus RhizosphereRWCHSLRPALPPVGEFRRTAGHLPGAPACSLSVTVEHLHPRELRSFPEPPDARRWLVEGVVDVSVDGDGTWDTDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAADSMRADGL*
Ga0079219_1000380873300006954Agricultural SoilVTVEHLHPGELGPFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
Ga0075419_1016068013300006969Populus RhizosphereGELGSFPEPPDARRWLVEGVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
Ga0075418_1025012523300009100Populus RhizosphereVTVEHLHPRELRSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
Ga0111538_1005352883300009156Populus RhizosphereLPGAPACSLSVTVEHLHPGELGSFPEPPDARRWLVEGVVDVSVDGDGPWDPDEDGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
Ga0105241_1028515313300009174Corn RhizosphereDFRTCPASDSHRWLVEDVVDVSVDDEGTWDPEEGGPAPAVVLRMPSYVARHLACLLDDWSTIGRLLESARGGDERDLAGALYEAAQAADALRADAS*
Ga0105249_1065805833300009553Switchgrass RhizosphereVTVEHLRPREIRSFPEPPDTRRWLVEDVVVVSVDDDGTWDPEEGGRAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARTAD
Ga0126307_1148132223300009789Serpentine SoilPESPGPRRWLVEDVVDVTIDGDGTWDPDEGALAPAVVLRMPTYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAADALRAGAS*
Ga0126305_1003652423300010036Serpentine SoilMVPSRADRGGGDRKFLGVSTPTGLDSLPLAPACSLSVTLEQLWPRSIPDQPGPRRWLVEDVVDVTIDGDGLWDPEEGVPVPAVVLRLPAYVARHLACVLDDWSTIGRLLESARGTDERDLAGVLYEAARAAEALRADAS*
Ga0126304_1037021813300010037Serpentine SoilPLAPACSLSVTVKHLRASDSRTFPESPGPRRWLVEDVVDVTIDGDGTWDPEEGAAVPAVVLRMPTYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAADALRAGAS*
Ga0126304_1088867013300010037Serpentine SoilMRPAPACSLSVTVEQLRPGGVVPLPEAGSHRRWRVEDAVDVMVDGEHVWDPEEDVPVPAVVLRMPAHVARHLACVLDDWTTIGRILESARGTDERDLAGVLHEAARAAEALRPDAS*
Ga0126314_1005024823300010042Serpentine SoilVTVKHLRASDSRTFPESPGPRRWLVEDVVDVTIDGDGTWDPEEGAPAPAVVLRMPTYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAADALRAGAS*
Ga0126311_1067252323300010045Serpentine SoilSTPTGLDSLPLAPACSLSVTVEHLRPRDIRAIPEQPVPRRWLVEDVVDVTIDGDGLWDPEEGAPVPAVVLRLPAYVARHLACVLDDWSTIGRLLESARGSDERDLAGVLYEAARAAEALRADAS*
Ga0126311_1097462113300010045Serpentine SoilMRPAPACSLSVTVEHLRPASVVPLPAAGTRRWRVEDVVEVEVDGERVWDPEESIPVPAVVLRMPAHVARHLACMLDDWTTIGRILESARATDERDLAGVLHEAARAAEALQADAS*
Ga0126311_1154690113300010045Serpentine SoilLAPACSLSVTVKHLRASDSRTFPESPGPRRWLVEDVVDVTIDGDGTWDPEEGAAVPAVVLRMPTYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAADALRAGAS*
Ga0126306_1019926833300010166Serpentine SoilMVPSSARRDGAGRKFLGVSTPTGLDSLPLAPACSLSVTAEHQHVHLRPRELRAIPDQSGQRRWTVEDVVDVTIDGDGLWDPEEGAAVPAVVLRLPAYMARHLACVLDDWSTIGRLLESARGSDQRVLAGVLYEAARVAEALRADAS*
Ga0126306_1189742213300010166Serpentine SoilALDTTHRALACSLSVTVKQLHTGDVVPLPGPSGKRRWLVEDVVDVTIDSDGVWDPEEAVPVPAVVLRMPAHVARHLACVLDDWSTIGRIMESARGTDERDLAGVLHEAAREAEALHADAS
Ga0134128_1103331313300010373Terrestrial SoilLPPVGEFRRTAGHLPGAPACSLSVTVEHLRPRDFRTCPASDSHRWLVEDVVDVSVDDEGTWDPEEGGPAPAVVLRMPSYVARHLACLLDDWSTIGRLLESARGGDERDLAGALYEAAQAADALRADAS*
Ga0150985_10330229913300012212Avena Fatua RhizosphereSLSVTVEHLRPREIRPPAEPSGCRMWLVEGVVDVTVDGDGTWDPEDGRAAPAVVLRMPAYVARHLACLLDDWSTIGRLLESARGGDERDLAGVLYEAARVAEALRADVS*
Ga0157329_103781913300012491Arabidopsis RhizospherePRELRSFPEPPDARRWLVEGVVDVSVDGDGTWDTDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAAYSLRADGL*
Ga0157332_108435513300012511SoilVTVEHLHPGELGSFPEPPDARRWLVEGVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAADSMRADGL
Ga0157370_1171091423300013104Corn RhizosphereEHLHPRELRSFPEPPDPHRWLVEGVVDVSVDGDGSWDPDEGGPAPAVVLRMPPYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARVADSLRAGAS*
Ga0157375_1039060423300013308Miscanthus RhizosphereVTVEHLHPGELGSLPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARVADSLRAGAS*
Ga0163163_1282872923300014325Switchgrass RhizospherePEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
Ga0182000_1006689123300014487SoilVTVDHLRPREFHSFPEPPDTRRWLVEDVVDVSVDDDGTWDPEEDGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGALYEAASAADGMRADVS*
Ga0182000_1020311723300014487SoilVTVEHLHPREFRSLPEPPDTRRWLVEDVVDVSVDGDGTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGHLLESARGGDERDLAGVLYEAARVADALSADAS*
Ga0182000_1026364923300014487SoilVTVEHLRPRDFRSLQEPPDACRWLVEDVVDVRVDGDGTWDPEEGVSAPAVVLRMPAYVARHLACLLDDWSTIGRLLESARGGDERDLAGALYEAARAAESLRADAS*
Ga0182000_1027725913300014487SoilVTVEHLRPREFRSLQEPPDACRWLVEDVVDVTVDDDGTWDPEEGVPAPAVVLRMPAYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAADALRADAS*
Ga0132256_10089048513300015372Arabidopsis RhizosphereVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEDGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
Ga0132257_10150651523300015373Arabidopsis RhizosphereVTVEHLHPRELRSFPEPPDARRWLVEGVVDVSVDGDGTWDTDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGVLYEAARAADSLRADGL*
Ga0132255_10279613223300015374Arabidopsis RhizosphereVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGTWDTDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAADSLRADGL*
Ga0163161_1092283313300017792Switchgrass RhizosphereVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL
Ga0190275_1229618123300018432SoilMGLDTLRPAPACSLSVTVEHLRPRDVVSLPEQGGPRRRWLVEDAVDVTIDGDGLWDAEEGGPVPAVVLRMPAYVARHLACVLDDWSTIGRLLESARGTDERDLA
Ga0193613_104102913300018866SoilVTVEQLRPRDVRAIPEQAGPRRWLVEDVVDVTIDGDGLWDPEEGAPVPAVVLRLPSYVARHLACVLDDWSTIGRLLESARGTDERDLAGVLYEAARAADALRADAS
Ga0197907_1000641223300020069Corn, Switchgrass And Miscanthus RhizosphereVTVEHLHPRELRSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL
Ga0206356_1099109323300020070Corn, Switchgrass And Miscanthus RhizosphereRSFPEPPDPHRWLVEGVVDVSVDGDGSWDPDEGGPAPAVVLRMPPYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL
Ga0206356_1113984333300020070Corn, Switchgrass And Miscanthus RhizosphereVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARA
Ga0206352_1025580933300020078Corn, Switchgrass And Miscanthus RhizosphereRELRSFPEPPDPHRWLVEGVVDVSVDGDGSWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL
Ga0206350_1010633333300020080Corn, Switchgrass And Miscanthus RhizosphereCSLSVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL
Ga0206354_1146904223300020081Corn, Switchgrass And Miscanthus RhizosphereVTVEHLHPGELGSLPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL
Ga0206353_1167580313300020082Corn, Switchgrass And Miscanthus RhizospherePRWCHSLRPALPPVGEFRRTAGHLPGAPACSLSVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL
Ga0154015_159916623300020610Corn, Switchgrass And Miscanthus RhizosphereVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDKGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL
Ga0224712_1058774023300022467Corn, Switchgrass And Miscanthus RhizosphereRSFPEPPDPHRWLVEGVVDVSVDGDGSWDPDEGGPAPAVVLRMPPYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARVADSLRAGAS
Ga0222623_1034236413300022694Groundwater SedimentVTVEHLRPREIRSFPEPPDTRRWLVEDVVVVSVDDDGTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARTADSMRGGAS
Ga0222622_1008124433300022756Groundwater SedimentVTVEHLRPREIRSFPEPPDTRRWLVEDVVVVSVDDDGTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARTADSMRAGAS
Ga0207680_1045654423300025903Switchgrass RhizosphereIPRWCHSLRPALPPVGEFRRTAGHLPGAPACSLSVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARVADSLRAGAS
Ga0207699_1007342443300025906Corn, Switchgrass And Miscanthus RhizosphereAPACSLSVTVEHLRPRDFRTYPASDSHRWLVEDVVDVSVDDEGTWDPEEGGPAPAVVLRMPSYVARHLACLLDDWSTIGRLLESARGGDERDLAGALYEAAQAADALRADAS
Ga0207654_1021270613300025911Corn RhizosphereDFRTCPASDSHRWLVEDVVDVSVDDEGTWDPEEGGPAPAVVLRMPSYVARHLACLLDDWSTIGRLLESARGGDERDLAGALYEAAQAADALRADAS
Ga0207663_1115594413300025916Corn, Switchgrass And Miscanthus RhizosphereFRTYPASDSHRWLVEDVVDVSVDDEGTWDPEEGGPAPAVVLRMPSYVARHLACLLDDWSTIGRLLESARGGDERDLAGALYEAAQAADALRADAS
Ga0207657_1003781813300025919Corn RhizosphereSTAMPGPGVCGVVIPRWCHSLRPALPLVGEFRRTAGHLPGAPACSLSVTVEHLHPRELRSFPEPPDPHRWLVEGVVDVSVDGDGSWDPDEGGPAPAVVLRMPPYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARVADSLRAGAS
Ga0207687_1001552783300025927Miscanthus RhizosphereVSVRSSTAMPGPGVCGVVIPRWCHSLRPALPPVGEFRRTAGHLPGAPACSLSVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL
Ga0207690_1177484913300025932Corn RhizosphereGEFRRTAGHLPGAPACSLSVTVEHLHPRELRSFPEPPDPHRWLVEGVVDVSVDGDGSWDPDEGGPAPAVVLRMPPYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARVADSLRAGAS
Ga0207709_1094531623300025935Miscanthus RhizosphereDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARVADSLRAGAS
Ga0207704_1050568323300025938Miscanthus RhizospherePALPPVGEFRRTAGHLPGAPACSLSVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL
Ga0207711_1008830563300025941Switchgrass RhizosphereSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRKPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL
Ga0207661_1002508113300025944Corn RhizosphereGEFRRTAGHLPGAPACSLSVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL
Ga0207712_1045300333300025961Switchgrass RhizosphereVTVEHLRPREIRSFPEPPDTRRWLVEDVVVVSVDDDGTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARTAD
Ga0207658_1077824623300025986Switchgrass RhizosphereVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPPYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARVADSLRAGAS
Ga0207641_1071678423300026088Switchgrass RhizosphereVTVEHLRPRDFRTCPASDSHRWLVEDVVDVSVDDEGTWDPEEGGPAPAVVLRMPSYVARHLACLIDDWSTIGRLLESARGGDERDLAGALYEAAQAADALRADAS
Ga0207648_1036065013300026089Miscanthus RhizosphereGGCGVVIPRWCHSLRPALPPVGEFRRTAGHLPGAPACSLSVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL
Ga0209574_1030318313300027809AgaveVTVEHLRPRDFRSLQEPPDAYRWLVEDVVDVRVDGDGTWDPEEGVSAPAVVLRMPAYVARHLACLLDDWSTIGRLLESARGGDERDLAGVLYEAARAAESLRADAS
Ga0209382_1027551933300027909Populus RhizosphereVTVEHLHPGELGSFPEPPDARRWLVEDVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAADSLRADGL
Ga0307291_114591513300028707SoilVTVEHLRPREIRSFPEPPDTRRWLVEDVVVVSVDDDGTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARTADSLRADAS
Ga0307295_1011560623300028708SoilVTVEHLRPREFRSFSDPDTRRWLVEDVVDVSVDDDGTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARTADSLR
Ga0307311_1010726423300028716SoilVTVEHLRPREIRSFPDPPDTRRWLVEDVVVVSVDDDGTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGALYEAARTADSMRAGAS
Ga0307316_1016585913300028755SoilVTVEHLRPREIRSFPEPPDTRRWLVEDVVVVSVDDDGTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARTADSMRAG
Ga0307280_1014251913300028768SoilVTVEHLRPREFRSFSDPDTRRWLVEDVVDVSVDDDGTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARTADSLRADAS
Ga0307299_1032167413300028793SoilVTVEHLRPREIRSFPEPPDTRRWLVEDVVVVSVDDDGTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARTADSMRAGGS
Ga0307287_1018971823300028796SoilRVTALWTAREQALDRTRPAPACSLSVTIERLHSDSVVPLAGPAATRRWRVEDVVDVEVDDAGVWDPEEAVPVPAVVLRMPAHIARHLACVLDDWTTIGRILESARGTDERDLAGVLHEAARAAEALRTDAS
Ga0307302_1027995313300028814SoilVTVEHLRPREIRSFPEPPDTRRWLVEDVVVVSVDDDGTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARTADSLRAD
Ga0307310_1027097813300028824SoilVTVEHLRPREFRSFSDPDTRRWLVEDVVDVSVDDDGTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARTADSMRAGAS
Ga0307304_1047722123300028885SoilVTVEHLRPREIRSFPDPPDTRRWLVEDVVVVSVDDDGTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGSDERDLAGVLYEAARAAEALRADVS
Ga0247826_1029067023300030336SoilVTVEHLRPREFRSFPEPPDTRRWLVEGVVDVSVDGDGTWDPEEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAADALRADAS
Ga0268243_104259423300030510SoilVTVEHLRPREFRSLQEPPDACRWLVEDVVDVSVDGDGTWDPEEDGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGALYEAASAADGMRADVS
Ga0272434_102092463300031473RockVTVDHLRPREPRVLPEPSGPRRWLVEDVVDVTVDGDGTWDPEEGAAAPAVVLRMPAYVARHLACLLDDWSTIGRLLESARGGDERDLAGALYEAARVAEALRAEVS
Ga0308175_100000781113300031938SoilVTVEHLHPRELRSFPESPDARRWLVEDVVDVSVDGDGTWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESARGGDERDLAGVLYEAARAADSLRADAS
Ga0334918_004680_6_3263300034000Hypolithic BiocrustVTIEHLRPREPRVFPESPGPRRWLVEDVVDVTVDGDGAWDPEEGSAAPAVVLRMPAYVARHLACLLDDWSTIGRLLESARGGDERDLAGALYEAARVAEGLRADVS


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.