Metagenome Family F092308

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092308
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	66 residues
Representative Sequence	MADKRLRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Number of Associated Samples	57
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	14.02 %
% of genes from short scaffolds (< 2000 bps)	76.64 %
Associated GOLD sequencing projects	50
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.617 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland (22.430 % of family members)
Environment Ontology (ENVO)	Unclassified (27.103 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (30.841 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.04% β-sheet: 0.00% Coil/Unstructured: 65.96%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF13401	AAA_22	9.35
PF04366	Ysc84	5.61
PF01402	RHH_1	4.67
PF13502	AsmA_2	2.80
PF05036	SPOR	2.80
PF13505	OMP_b-brl	1.87
PF07589	PEP-CTERM	1.87
PF12146	Hydrolase_4	1.87
PF01464	SLT	0.93
PF03548	LolA	0.93
PF01738	DLH	0.93
PF00589	Phage_integrase	0.93
PF10576	EndIII_4Fe-2S	0.93
PF13412	HTH_24	0.93
PF02371	Transposase_20	0.93
PF02604	PhdYeFM_antitox	0.93
PF00072	Response_reg	0.93
PF03972	MmgE_PrpD	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	5.61
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.93
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.93
COG2834	Outer membrane lipoprotein-sorting protein	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.62 %
Unclassified	root	N/A	37.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.62 %
Unclassified	root	N/A	37.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.62 %
Unclassified	root	N/A	37.38 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	55.14 %
Unclassified	root	N/A	37.38 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	49.53 %
Unclassified	root	N/A	37.38 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	1.87 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.93 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	49.53 %
Unclassified	root	N/A	37.38 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	20.56 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.87 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	13.08 %
Deltaproteobacteria bacterium RBG_16_49_23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	4.67 %
Deltaproteobacteria bacterium RBG_16_48_10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_48_10	1.87 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.87 %
Sinorhizobium/Ensifer group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group	0.93 %
Deltaproteobacteria bacterium ADurb.Bin135	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin135	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	13.08 %
Deltaproteobacteria bacterium RBG_16_49_23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	4.67 %
Deltaproteobacteria bacterium RBG_16_48_10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_48_10	1.87 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.87 %
Sinorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium	0.93 %
Deltaproteobacteria bacterium ADurb.Bin135	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin135	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	13.08 %
Deltaproteobacteria bacterium RBG_16_49_23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	4.67 %
Deltaproteobacteria bacterium RBG_16_48_10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_48_10	1.87 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.87 %
Sinorhizobium meliloti	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium meliloti	0.93 %
Deltaproteobacteria bacterium ADurb.Bin135	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin135	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000311\|WSSedA1Ba3DRAFT_1101659	Not Available	551	Open in IMG/M
3300002961\|JGI11641J44799_10075537	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	953	Open in IMG/M
3300003859\|Ga0031653_10170298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium meliloti	569	Open in IMG/M
3300003859\|Ga0031653_10200713	Not Available	522	Open in IMG/M
3300003861\|Ga0031654_10054831	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1119	Open in IMG/M
3300005254\|Ga0068714_10113438	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1299	Open in IMG/M
3300005832\|Ga0074469_10650307	All Organisms → cellular organisms → Bacteria	17182	Open in IMG/M
3300006224\|Ga0079037_100332454	All Organisms → cellular organisms → Bacteria → Proteobacteria	1420	Open in IMG/M
3300006224\|Ga0079037_100435102	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1248	Open in IMG/M
3300009037\|Ga0105093_10388240	Not Available	759	Open in IMG/M
3300009053\|Ga0105095_10048998	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2272	Open in IMG/M
3300009053\|Ga0105095_10433246	Not Available	727	Open in IMG/M
3300009082\|Ga0105099_10085364	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1713	Open in IMG/M
3300009091\|Ga0102851_10273601	Not Available	1634	Open in IMG/M
3300009091\|Ga0102851_12644806	Not Available	575	Open in IMG/M
3300009111\|Ga0115026_11070224	Not Available	649	Open in IMG/M
3300009131\|Ga0115027_10136376	All Organisms → cellular organisms → Bacteria	1479	Open in IMG/M
3300009131\|Ga0115027_11600447	Not Available	538	Open in IMG/M
3300009171\|Ga0105101_10374992	Not Available	692	Open in IMG/M
3300009760\|Ga0116131_1043291	Not Available	1485	Open in IMG/M
3300010391\|Ga0136847_10549563	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3823	Open in IMG/M
3300012931\|Ga0153915_10167299	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2394	Open in IMG/M
3300012931\|Ga0153915_10212252	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2129	Open in IMG/M
3300012931\|Ga0153915_10372330	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_48_10	1611	Open in IMG/M
3300012931\|Ga0153915_10767054	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1117	Open in IMG/M
3300012931\|Ga0153915_11034764	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300012931\|Ga0153915_11460389	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	799	Open in IMG/M
3300012931\|Ga0153915_11970684	Not Available	683	Open in IMG/M
3300012931\|Ga0153915_12132779	Not Available	656	Open in IMG/M
3300012964\|Ga0153916_10067905	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3275	Open in IMG/M
3300012964\|Ga0153916_10107450	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2656	Open in IMG/M
3300012964\|Ga0153916_10349074	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin135	1528	Open in IMG/M
3300012964\|Ga0153916_11504118	Not Available	749	Open in IMG/M
3300012964\|Ga0153916_12823634	Not Available	548	Open in IMG/M
3300012964\|Ga0153916_13370809	Not Available	502	Open in IMG/M
3300017929\|Ga0187849_1126048	Not Available	1056	Open in IMG/M
3300017939\|Ga0187775_10016575	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	1964	Open in IMG/M
3300017939\|Ga0187775_10035311	All Organisms → cellular organisms → Bacteria → Proteobacteria	1459	Open in IMG/M
3300017939\|Ga0187775_10475422	Not Available	530	Open in IMG/M
3300017944\|Ga0187786_10013564	All Organisms → cellular organisms → Bacteria → Proteobacteria	2036	Open in IMG/M
3300017944\|Ga0187786_10321857	Not Available	643	Open in IMG/M
3300017961\|Ga0187778_10217552	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1220	Open in IMG/M
3300017961\|Ga0187778_10588223	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	745	Open in IMG/M
3300017966\|Ga0187776_10037964	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2704	Open in IMG/M
3300017966\|Ga0187776_10312766	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	1025	Open in IMG/M
3300017966\|Ga0187776_10314563	Not Available	1022	Open in IMG/M
3300017966\|Ga0187776_10330446	Not Available	1000	Open in IMG/M
3300017966\|Ga0187776_10485915	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300018032\|Ga0187788_10074765	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1190	Open in IMG/M
3300018055\|Ga0184616_10065226	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1246	Open in IMG/M
3300018059\|Ga0184615_10217256	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1074	Open in IMG/M
3300018062\|Ga0187784_10266078	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1394	Open in IMG/M
3300018064\|Ga0187773_10030367	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2379	Open in IMG/M
3300018064\|Ga0187773_10075762	Not Available	1607	Open in IMG/M
3300018064\|Ga0187773_10528491	Not Available	709	Open in IMG/M
3300018064\|Ga0187773_10660662	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	647	Open in IMG/M
3300018068\|Ga0184636_1021298	Not Available	1990	Open in IMG/M
3300018086\|Ga0187769_10014719	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5077	Open in IMG/M
3300018088\|Ga0187771_10181138	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1743	Open in IMG/M
3300018088\|Ga0187771_10645888	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	897	Open in IMG/M
3300018089\|Ga0187774_10628850	Not Available	699	Open in IMG/M
3300018089\|Ga0187774_10786589	Not Available	641	Open in IMG/M
3300018090\|Ga0187770_10152447	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1761	Open in IMG/M
3300022208\|Ga0224495_10394141	Not Available	543	Open in IMG/M
3300025164\|Ga0209521_10468624	Not Available	668	Open in IMG/M
3300025174\|Ga0209324_10090017	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2104	Open in IMG/M
3300026353\|Ga0256818_1016529	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	659	Open in IMG/M
3300027713\|Ga0209286_1001825	All Organisms → cellular organisms → Bacteria	6772	Open in IMG/M
3300027715\|Ga0208665_10069342	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1055	Open in IMG/M
3300027723\|Ga0209703_1324333	Not Available	542	Open in IMG/M
3300027731\|Ga0209592_1025068	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2246	Open in IMG/M
3300027740\|Ga0214474_1103142	Not Available	1075	Open in IMG/M
3300027740\|Ga0214474_1110750	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1033	Open in IMG/M
3300027811\|Ga0256868_10011520	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4273	Open in IMG/M
3300027811\|Ga0256868_10106876	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1241	Open in IMG/M
3300027877\|Ga0209293_10025602	All Organisms → cellular organisms → Bacteria	2180	Open in IMG/M
3300027877\|Ga0209293_10106005	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1280	Open in IMG/M
3300027887\|Ga0208980_10046975	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	2513	Open in IMG/M
3300027900\|Ga0209253_10033557	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	4297	Open in IMG/M
3300027900\|Ga0209253_10113334	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2216	Open in IMG/M
3300027900\|Ga0209253_10177545	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1712	Open in IMG/M
3300027900\|Ga0209253_10481128	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	929	Open in IMG/M
3300027902\|Ga0209048_10057009	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3157	Open in IMG/M
3300030613\|Ga0299915_10127632	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1837	Open in IMG/M
3300030613\|Ga0299915_10207945	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1378	Open in IMG/M
3300031949\|Ga0214473_10053750	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4716	Open in IMG/M
3300031949\|Ga0214473_11214882	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_48_10	779	Open in IMG/M
3300032069\|Ga0315282_10027357	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7458	Open in IMG/M
3300032069\|Ga0315282_10028669	All Organisms → cellular organisms → Bacteria	7173	Open in IMG/M
3300033414\|Ga0316619_11839962	Not Available	549	Open in IMG/M
3300033433\|Ga0326726_10117177	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	2401	Open in IMG/M
3300033433\|Ga0326726_10495228	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1168	Open in IMG/M
3300033480\|Ga0316620_10157957	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1831	Open in IMG/M
3300033480\|Ga0316620_10669286	Not Available	983	Open in IMG/M
3300033480\|Ga0316620_11778759	Not Available	611	Open in IMG/M
3300033480\|Ga0316620_12231519	Not Available	544	Open in IMG/M
3300033480\|Ga0316620_12294484	Not Available	537	Open in IMG/M
3300033486\|Ga0316624_11807666	Not Available	565	Open in IMG/M
3300033486\|Ga0316624_12136465	Not Available	521	Open in IMG/M
3300033489\|Ga0299912_10387035	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1150	Open in IMG/M
3300033489\|Ga0299912_10849573	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	693	Open in IMG/M
3300033489\|Ga0299912_10990634	Not Available	627	Open in IMG/M
3300033513\|Ga0316628_100213027	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2332	Open in IMG/M
3300033513\|Ga0316628_101062020	Not Available	1076	Open in IMG/M
3300033513\|Ga0316628_101496194	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	899	Open in IMG/M
3300033513\|Ga0316628_104372198	Not Available	501	Open in IMG/M
3300034090\|Ga0326723_0325912	Not Available	691	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	49.53%
Terrestrial	Environmental → Terrestrial	49.53%
Lab Enrichment	Engineered → Lab Enrichment	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.79%
Freshwater	Environmental → Aquatic → Freshwater	42.06%
Marine	Environmental → Aquatic → Marine	3.74%
Sediment	Environmental → Aquatic → Sediment	3.74%
Peat	Environmental → Terrestrial → Peat	2.80%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.93%
Defined Media	Engineered → Lab Enrichment → Defined Media	0.93%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	33.64%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	19.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment	12.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	12.15%
Lentic	Environmental → Aquatic → Freshwater → Lentic	7.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.74%
Lake	Environmental → Aquatic → Freshwater → Lake	2.80%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.80%
Sediment	Environmental → Aquatic → Marine → Sediment	0.93%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.93%
Anaerobic Media	Engineered → Lab Enrichment → Defined Media → Anaerobic Media	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	33.64%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	17.76%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	12.15%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	7.48%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	6.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.74%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.80%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	2.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.93%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.93%
Unclassified	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	22.43%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	13.08%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	11.21%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	7.48%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	6.54%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	4.67%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.74%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	2.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.80%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.80%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.93%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.93%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.93%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.93%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.93%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.93%
Enrichment Culture	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000311	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300002961	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300003859	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR	Environmental	Open in IMG/M
3300003861	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR	Environmental	Open in IMG/M
3300005254	Enrichment culture microbial communities from rom New York Harbor, USA that are MTBE-degrading - MTBE-NYH (New York Harbor Sulfidogenic) MetaG	Engineered	Open in IMG/M
3300005832	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300009037	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009171	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009760	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_100	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018068	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b2	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300022208	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1	Environmental	Open in IMG/M
3300025164	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4	Environmental	Open in IMG/M
3300025174	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 3	Environmental	Open in IMG/M
3300026353	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PR4	Environmental	Open in IMG/M
3300027713	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027715	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)	Environmental	Open in IMG/M
3300027723	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027731	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027740	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214 HiSeq	Environmental	Open in IMG/M
3300027811	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227 HiSeq	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300030613	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032069	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
WSSedA1Ba3DRAFT_11016592	3300000311	Wetland	MVDKRLRQRITISLDEEALRSVSAIASENDVSIARVVRYAVDNFLNXWKEDRQVQLFLPLSKKKGG*
JGI11641J44799_100755371	3300002961	Wetland	MVDKRLRQRITISLDEEALRSVSAIASENDVSIARVVRYAVDNFLNKWKEDRQVQLFLPLSKKKGG*
Ga0031653_101702981	3300003859	Freshwater Lake Sediment	MVDKRLRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLREWKEGRQVQLFLPLSKKKG
Ga0031653_102007132	3300003859	Freshwater Lake Sediment	MVDKRRRQRITISLDEEALKSVSAVASENDVSIARVIRYAVDNFLIEWKEGRQVQLFLPLSKKKGG*
Ga0031654_100548313	3300003861	Freshwater Lake Sediment	MADKKLRQRITISLDEEALKSVSSIASQNDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG*
Ga0068714_101134381	3300005254	Enrichment Culture	MVNDKQKQRITISLVKESFEYVSSIASENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKGKNKKS*
Ga0074469_1065030715	3300005832	Sediment (Intertidal)	MINDKLKQRITISLVKESYENISSIASENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKGKNKKI*
Ga0079037_1003324542	3300006224	Freshwater Wetlands	MVDKRPRQRITISLDEEALRSVSAIASENDISIARVVRYAVDKFLKELKEGSQVQLFLPLSRKKGG*
Ga0079037_1004351023	3300006224	Freshwater Wetlands	MADKRLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG*
Ga0105093_103882402	3300009037	Freshwater Sediment	MVDKRLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG*
Ga0105095_100489981	3300009053	Freshwater Sediment	MVNQSLRQRITISLNKEALKSVSSIASDNDVSIARVIRYAVDNFLKEWKEGRQEQLFLPLGKKKGG*
Ga0105095_104332462	3300009053	Freshwater Sediment	MADKKLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG*
Ga0105099_100853642	3300009082	Freshwater Sediment	MVDKRLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKELKEGSQVQLFLPLSKKKGG*
Ga0102851_102736011	3300009091	Freshwater Wetlands	DKRLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG*
Ga0102851_126448061	3300009091	Freshwater Wetlands	MVDKRLRQRITISLDEEALRSVSAIASENDVSIARVVRYAVDNFLNEWKEGRQVQLFLPLSKKKGG*
Ga0115026_110702242	3300009111	Wetland	MADKRQRQRITISLDEEALKSVSTIASENDVSIARVVRHAVDNFLNEWKEGRQVQLFLPLSKKKGG*
Ga0115027_101363761	3300009131	Wetland	RPRQRITISLDEEALRSVSAIASENDISIARVVRYAVDKFLKELKEGSQVQLFLPLSRKKGG*
Ga0115027_116004471	3300009131	Wetland	DSLVTGLMADKRLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG*
Ga0105101_103749921	3300009171	Freshwater Sediment	MVDKRPRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKELKEGSQVQLFLPLSKKKGG*
Ga0116131_10432912	3300009760	Peatland	MLNGKLRQRITISLDKEALKSVSSIASENDVSIARVIRYTVDNFLKEWKEGGQQQLFLPLGKKKGG*
Ga0136847_105495638	3300010391	Freshwater Sediment	MADKRLRQRITISLDEEALKSVSSIASQNDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKMKGG*
Ga0153915_101672993	3300012931	Freshwater Wetlands	MVAKKPRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSTKKGG*
Ga0153915_102122523	3300012931	Freshwater Wetlands	MVNDKLKQRITISLAKESFENVSSIALENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKKS*
Ga0153915_103723302	3300012931	Freshwater Wetlands	MVAKRLRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG*
Ga0153915_107670543	3300012931	Freshwater Wetlands	MVEKRLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG*
Ga0153915_110347642	3300012931	Freshwater Wetlands	MADKRLRQRITISLDEEVLKSISFIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSGKKGG*
Ga0153915_114603891	3300012931	Freshwater Wetlands	MVNDRQRERITISLDKEALKSVSSIASENDVSIARVIRYAVDNFLKEWKEGRQEQLFLPLGKKKRG*
Ga0153915_119706842	3300012931	Freshwater Wetlands	MAGRRRRQRITISLDEEALKTVSSIASENDVSIARVVRYAMDNFLKEWKEGRQVQLFLPLSTKKGG*
Ga0153915_121327791	3300012931	Freshwater Wetlands	RQRITISLDEEVLKSISFIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSGKKGG
Ga0153916_100679052	3300012964	Freshwater Wetlands	MVNDKLKQRITISLVKETFENVSSIALENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKKS*
Ga0153916_101074503	3300012964	Freshwater Wetlands	MANQRLRQRITISLDKEALETISSISSENDVSIARVIRYAVDNLLKEWKEGRPDQLQLILPMGRKRRLQ*
Ga0153916_103490741	3300012964	Freshwater Wetlands	MADKRLRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSGKKGG*
Ga0153916_115041182	3300012964	Freshwater Wetlands	MINGKLRQRITISLDKEALKSVSSIASENDVSIARVIRYAVDNFLKEWKEGGQQQLFLPFGKKKGG*
Ga0153916_128236341	3300012964	Freshwater Wetlands	MINQRLRQRITISLDKEALKSVSSVASDNDVSIARVIRYAVDNFLKEWKEGRQEQLFLPLGKKKRG*
Ga0153916_133708091	3300012964	Freshwater Wetlands	MVDKRPRQRITISLDEEALKSVSAIASENDISIARVVRYAVDNFLKEWKEGSQVQLFLP
Ga0187849_11260482	3300017929	Peatland	MLNGKLRQRITISLDKEALKSVSSIASENDVSIARVIRYTVDNFLKEWKEGGQQQLFLPLGKKKGG
Ga0187775_100165754	3300017939	Tropical Peatland	MVDKRIRQRITISLDEEALRSISSIASENDVSIARVVRYAVDNFLREWREGNQVQLFLPLSKKKGG
Ga0187775_100353112	3300017939	Tropical Peatland	MLEDRQRERITISLDKEALKSVSSIASENDVSIARVIRFAVDNFLKEWKEGRQEQLPLPLGKKKGG
Ga0187775_104754222	3300017939	Tropical Peatland	MVDKKARQRITISLDEEALKNVSSIASENDVSIARVIRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0187786_100135642	3300017944	Tropical Peatland	MVKDRQRERITISLDKEALKSVSSIASENDVSIARVIRFAVDNFLKEWKEGRQEQLPLPLGKKKGG
Ga0187786_103218572	3300017944	Tropical Peatland	MVNKKARQRITISLDEGALKSISTIASENDVSIARVIRYAVDNFLREWKEGRQVQLFLPLSGKKGG
Ga0187778_102175523	3300017961	Tropical Peatland	MVAKRLRQRTTISLDEEALKSISSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0187778_105882233	3300017961	Tropical Peatland	MTNGKLRQRITISLDKDALGRISSIASENDVSIARVVRHAVDNFLKEWKEGSQEQLFLPLGKKKGG
Ga0187776_100379645	3300017966	Tropical Peatland	MVDKRIRQRITISLDEEALRSVSSIASENDVSIARVVRYAVDNFLREWREGNQVQLFLPLSKKKGG
Ga0187776_103127661	3300017966	Tropical Peatland	MVDKRIRQRITISLDEEALKIISSIASENDVSIARVVRYAVDNFLREWREGNQVQLFLPLSRKKGG
Ga0187776_103145633	3300017966	Tropical Peatland	MVAKKIRQRTTISLDEEALKSISSIASENDVSIARVVRYAVDNFLREWKEGRQVQLFLPLSKKKGG
Ga0187776_103304462	3300017966	Tropical Peatland	MVKDRQRERITISLDKEALKSVSSIASENDVSIARVIRYAVDNFLKEWKEGRQEQLPLPLGKKKGG
Ga0187776_104859151	3300017966	Tropical Peatland	MVNDKSKQRITISLVKEVFESISSIASENDVSIAWVIRYAVDRFLKEWREGLQEQLFLPLGKNRGKK
Ga0187788_100747654	3300018032	Tropical Peatland	MVDKKQKQRIAISLDAEALKSVSFVASQNDVSTALVVRYAVDNFLKEWKEGRQVQLFLLLGKKKGG
Ga0184616_100652264	3300018055	Groundwater Sediment	MADKRLRQRITISLDEEALKSVSSIASQNDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0184615_102172564	3300018059	Groundwater Sediment	MADKRLRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0187784_102660782	3300018062	Tropical Peatland	MVNGKLRQRITISLDKEALKRVSSIASENDVSIARVIRHTVDKFLKEWKEGSQGQLFLPLNKKKGG
Ga0187773_100303672	3300018064	Tropical Peatland	MAGKRLRQRITISLDEEALKTVSSIASENDVSIARVVRYAVDNFLNEWKEGRQVQLFLPLSKKKGG
Ga0187773_100757625	3300018064	Tropical Peatland	MVDKRVRQRITISLDEEALRSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0187773_105284911	3300018064	Tropical Peatland	MVDKRARQRITISLDEEALKNVSSIASENDVSIARVIRYAVDNFLKEWKEGRQVQLFLPLSTKKGG
Ga0187773_106606621	3300018064	Tropical Peatland	RLRQRITISLDKMAMETVSSIASENDISIARVIRYAVDNLLKELKEGRQDQLQLNLPLARKES
Ga0184636_10212985	3300018068	Groundwater Sediment	RQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKMKGG
Ga0187769_100147195	3300018086	Tropical Peatland	MTNGKSRQRITISLDKGALKRLSSIALEYDVSIARVIRHAVDNFLKEWKEGSQEQLFLPLGNKKGDQ
Ga0187771_101811383	3300018088	Tropical Peatland	MVAKKLRQRTTVSLDEEALKSISSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0187771_106458882	3300018088	Tropical Peatland	MANGKLRQRITISLDAEALKRLSTIALEYDVSIARVIRHAVDNFLIEWKEGSQEQLFLPLGKKKGGQ
Ga0187774_106288503	3300018089	Tropical Peatland	MNNGKLRQRITISLNKDALKRISSVASENDVSIARVIRHAVDNFLKEWKEGRQEQLFLPLSKKKGGQ
Ga0187774_107865892	3300018089	Tropical Peatland	MVEDRQRERITISLDEEALKTVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSEKKGG
Ga0187770_101524471	3300018090	Tropical Peatland	MTNGKLRQRITISLKEALKRLSSIALENDVSIARVIRHAVDNLLKEWKEDRQEQLFLPLAKKKES
Ga0224495_103941411	3300022208	Sediment	MVNDKQKQRITISLVKESFENILSIASENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKGKNKKI
Ga0209521_104686242	3300025164	Soil	MNNHSTFKKKCQQKFTIFIHEGSLIINLMADKRQRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSGKKGG
Ga0209324_100900172	3300025174	Soil	MVDKRLRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSGKKGG
Ga0256818_10165291	3300026353	Sediment	ISLDEEALKSVSAIASENDVSIARVIRYAVDSFLNEWKEGRQVQLFLPLSKKKGG
Ga0209286_10018252	3300027713	Freshwater Sediment	MVDKRLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0208665_100693423	3300027715	Deep Subsurface	MVDKRPRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0209703_13243331	3300027723	Freshwater Sediment	MVNQSLRQRITISLNKEALKSVSSIASDNDVSIARVIRYAVDNFLKEWKEGRQEQLFLPLGKKKGG
Ga0209592_10250685	3300027731	Freshwater Sediment	LRQRITISLNKEALKSVSSIASDNDVSIARVIRYAVDNFLKEWKEGRQEQLFLPLGKKKG
Ga0214474_11031421	3300027740	Soil	MANQRLRQRITISLDKEALETLLSIASQNDVSIARVIRYAVDNLLKEWKEGRQHQLQLILPLGGKKEVAVT
Ga0214474_11107501	3300027740	Soil	MADKRLRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKRKGG
Ga0256868_100115205	3300027811	Soil	MINQRLRQRITISLDKEALKSVSSVASDNDVSIARVIRYAVDNFLKEWKEGRQEQLFLPLGKKKGG
Ga0256868_101068763	3300027811	Soil	MVNDKLKQRISISLVKESFENVSSIASENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKGKNKKS
Ga0209293_100256025	3300027877	Wetland	MVDKRPRQRITISLDEEALRSVSAIASENDISIARVVRYAVDKFLKELKEGSQVQLFLPLSRKKGG
Ga0209293_101060051	3300027877	Wetland	MADKRLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0208980_100469753	3300027887	Wetland	MVDKRLRQRITISLDEEALRSVSAIASENDVSIARVVRYAVDNFLNKWKEDRQVQLFLPLSKKKGG
Ga0209253_100335572	3300027900	Freshwater Lake Sediment	MADKRLRQRITISLDEEALKSISSIASQNDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKVKGG
Ga0209253_101133342	3300027900	Freshwater Lake Sediment	MVDKRRRQRITISLDEEALKSVSAVASENDVSIARVIRYAVDNFLIEWKEGRQVQLFLPLSKKKGG
Ga0209253_101775453	3300027900	Freshwater Lake Sediment	MVDKRLRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLREWKEGRQVQLFLPLSKKKGG
Ga0209253_104811283	3300027900	Freshwater Lake Sediment	MVNDKLKQRITISLVKETFENVSSIASENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKGKNK
Ga0209048_100570093	3300027902	Freshwater Lake Sediment	MADKKLRQRITISLDEEALKSVSSIASQNDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0299915_101276321	3300030613	Soil	MVNDKLKQRITISLVKESFENVSSIASENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKGKNKKS
Ga0299915_102079451	3300030613	Soil	MINQRLRQRITISLDKEALKSVSSVASDNDVSIARVIRYAVDNFLKEWKEGRQEQLFLPL
Ga0214473_100537504	3300031949	Soil	MVNDKLKQRITISLIKESFENVSSIASENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKGKNKKS
Ga0214473_112148821	3300031949	Soil	MVDKRQRQRITISLDEEALKSVSSIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLRKEKGG
Ga0315282_1002735710	3300032069	Sediment	MLNGKLRQRITISLDKEALKSVSSIASENDVSIARVIRYAVDNFLKEWKEGGQQQLFLPFGKKKGG
Ga0315282_100286695	3300032069	Sediment	MVNDRQRGRITISLDKEALKSVSSIASENDVSIARVIRYAVDNFLKEWKEGRQEQLFLPLGKKKGG
Ga0316619_118399622	3300033414	Soil	MVDKRLRQRITISLDEEALRSVSAIASENDVSIARVVRYAVDNFLNEWKEDRQVQLFLPLSKKKGG
Ga0326726_101171774	3300033433	Peat Soil	MFIIFNHGDSLIIDFMVDKKQKQRIAISLDAETVKNVSSIASQNDVSIARVVRYAVDKFLKEWKEGRQVQLFLLLGKKKGG
Ga0326726_104952281	3300033433	Peat Soil	MINGKLRQRITISLDKEALKSVSSIASENDVSIARVIRYAVDNFLKEWKEGGQQQLFLPFGKKKGG
Ga0316620_101579573	3300033480	Soil	MVNDRERERITISLDKEALKSVSSIASENDVSIARVIRYAVDNFLKEWKEGPQEQLLLPLGKKKGR
Ga0316620_106692862	3300033480	Soil	MVDKRLRQRITISLDEEALRSVSAIASENDVSIARVVRYAVDNFLNEWKEGRQVQLFLPLSKKKGG
Ga0316620_117787591	3300033480	Soil	MADKRQRQRITISLDEEALKSVSTIASENDVSIARVVRHAVDNFLNEWKEGRQVQLFLPLSKKKGG
Ga0316620_122315192	3300033480	Soil	MVDKRPRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKELKEGSQVQLFLPLSKKKGG
Ga0316620_122944841	3300033480	Soil	MIEKRLRQRITISLDKEALENIASIASENDISIGRVIRYAVGNFLKEWKEGRQEQLFLPLSKKKGGVAE
Ga0316624_118076661	3300033486	Soil	MADKRLRQRITISLDEEVLKSISFIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSGKKGG
Ga0316624_121364652	3300033486	Soil	MIEKRLRQRITISLDKEALESIASIASENDISIGRVIRYAVGNFLKEWKEGRQEQLFLPLSKKKAG
Ga0299912_103870352	3300033489	Soil	MVNDKLKQRISISLVKESFENVSSIASENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNNKGKNKKS
Ga0299912_108495733	3300033489	Soil	LMIDKRQRQRITISLDEEALKSVSSIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLRRERGG
Ga0299912_109906341	3300033489	Soil	PIYMANDKLKQRITISLVKESFENVSSIASENDVSIAWVIRYAVDKFLKEWGEGRQEQLFLPLGKNNKGKNKKS
Ga0316628_1002130271	3300033513	Soil	MVAKKPRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSTK
Ga0316628_1010620203	3300033513	Soil	MIEKRLRQRITISLDKEALENIASIASENDISIGRVIRYAVGNFLKEWKEGRQEQLFLPLSKKKGG
Ga0316628_1014961943	3300033513	Soil	MVNDRQRERITISLDKEALKSVSSIASENDVSIARVIRYAVDNFLKEWKEGPQEQLLLPLGKKKGR
Ga0316628_1043721982	3300033513	Soil	MANQRLRQRITISLDKEALETISSISSENDVSIARVIRYAVDNLLKEWKEGRPDQLQLILPMGRKRRLQ
Ga0326723_0325912_128_328	3300034090	Peat Soil	MVDKKQRQRIAISLDAEALKSVSSIASHNDVSIARVVRYAVDNFLKGWKEGRQVQLFLPLSKKKGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092308

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences