Metagenome / Metatranscriptome Family F092298

Basic Information
Family ID	F092298
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	52 residues
Representative Sequence	MDDIPGEKMFGQFPEQARKEGRLKGGFEVDPLIRDDFVNQTKHAKGEEKR
Number of Associated Samples	75
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.26 %
% of genes near scaffold ends (potentially truncated)	78.50 %
% of genes from short scaffolds (< 2000 bps)	93.46 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Most Common Taxonomy
Group	Bacteria (95.327 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (27.103 % of family members)
Environment Ontology (ENVO)	Unclassified (28.972 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (44.860 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.79% β-sheet: 0.00% Coil/Unstructured: 78.21%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF12787	EcsC	18.69
PF09912	DUF2141	7.48
PF04055	Radical_SAM	4.67
PF12732	YtxH	2.80
PF03631	Virul_fac_BrkB	1.87
PF02310	B12-binding	1.87
PF01988	VIT1	0.93
PF07689	KaiB	0.93
PF05368	NmrA	0.93
PF00665	rve	0.93
PF16561	AMPK1_CBM	0.93
PF12675	DUF3795	0.93
PF00034	Cytochrom_C	0.93
PF00691	OmpA	0.93
PF00155	Aminotran_1_2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	1.87
COG1633	Rubrerythrin, includes spore coat protein YhjR	Inorganic ion transport and metabolism [P]	0.93
COG1814	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family	Inorganic ion transport and metabolism [P]	0.93
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.93
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.93
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.93
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.33 %
Unclassified	root	N/A	4.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.33 %
Unclassified	root	N/A	4.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.33 %
Unclassified	root	N/A	4.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	4.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.74 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	2.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	4.67 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	2.80 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	4.67 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	2.80 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	4.67 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	2.80 %
Syntrophorhabdales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	4.67 %
unclassified Nitrospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae	2.80 %
Syntrophorhabdaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	4.67 %
Nitrospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	2.80 %
Syntrophorhabdus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003910\|JGI26437J51864_10098736	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300004051\|Ga0055492_10042307	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300004481\|Ga0069718_15206206	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300006224\|Ga0079037_101301628	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300006224\|Ga0079037_101573144	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300006224\|Ga0079037_102172812	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300006224\|Ga0079037_102273508	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300006795\|Ga0075520_1061819	All Organisms → cellular organisms → Bacteria	1770	Open in IMG/M
3300009078\|Ga0105106_10566260	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300009091\|Ga0102851_11364507	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300009091\|Ga0102851_11950062	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300009111\|Ga0115026_10882004	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300009111\|Ga0115026_11401904	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300009131\|Ga0115027_10305555	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300009153\|Ga0105094_10669106	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300009153\|Ga0105094_10953110	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300009166\|Ga0105100_10557941	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300009166\|Ga0105100_10578807	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300009167\|Ga0113563_12354375	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300009167\|Ga0113563_13239372	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300009171\|Ga0105101_10625620	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300009179\|Ga0115028_10812887	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300009614\|Ga0116104_1108858	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300009616\|Ga0116111_1141392	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300009634\|Ga0116124_1150653	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300012931\|Ga0153915_11404749	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300012931\|Ga0153915_12168762	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300012931\|Ga0153915_12738304	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300012964\|Ga0153916_11921470	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300012964\|Ga0153916_12218632	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300014308\|Ga0075354_1142622	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300014498\|Ga0182019_10023617	All Organisms → cellular organisms → Bacteria	3388	Open in IMG/M
3300017941\|Ga0187850_10538562	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300018003\|Ga0187876_1172997	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300018005\|Ga0187878_1080100	All Organisms → cellular organisms → Bacteria	1377	Open in IMG/M
3300018014\|Ga0187860_1247524	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300018030\|Ga0187869_10235749	Not Available	889	Open in IMG/M
3300018057\|Ga0187858_10195817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1322	Open in IMG/M
3300018070\|Ga0184631_10382391	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300022185\|Ga0079039_1665098	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300023311\|Ga0256681_10784723	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300025322\|Ga0209641_10540242	Not Available	820	Open in IMG/M
3300025507\|Ga0208188_1068108	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300027713\|Ga0209286_1228843	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300027713\|Ga0209286_1231941	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300027723\|Ga0209703_1207346	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300027726\|Ga0209285_10028394	All Organisms → cellular organisms → Bacteria	1613	Open in IMG/M
3300027726\|Ga0209285_10168966	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300027740\|Ga0214474_1276995	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300027885\|Ga0209450_10507827	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300027885\|Ga0209450_10523715	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300027896\|Ga0209777_10081339	All Organisms → cellular organisms → Bacteria	2811	Open in IMG/M
3300027896\|Ga0209777_10731447	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300027902\|Ga0209048_10095161	All Organisms → cellular organisms → Bacteria	2304	Open in IMG/M
3300027955\|Ga0209078_1220891	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300027979\|Ga0209705_10099482	All Organisms → cellular organisms → Bacteria → Proteobacteria	1584	Open in IMG/M
3300030613\|Ga0299915_10064864	All Organisms → cellular organisms → Bacteria	2692	Open in IMG/M
3300031331\|Ga0307432_1067083	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	1078	Open in IMG/M
3300031355\|Ga0307421_1085669	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	1042	Open in IMG/M
3300031554\|Ga0315544_1115593	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300031563\|Ga0307436_1155384	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300031650\|Ga0315539_1230087	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300031652\|Ga0315553_10447013	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300031707\|Ga0315291_10131354	All Organisms → cellular organisms → Bacteria	2651	Open in IMG/M
3300031949\|Ga0214473_10231116	All Organisms → cellular organisms → Bacteria	2131	Open in IMG/M
3300031952\|Ga0315294_10515860	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300032046\|Ga0315289_10558553	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300032069\|Ga0315282_10168881	Not Available	1673	Open in IMG/M
3300032069\|Ga0315282_10216145	All Organisms → cellular organisms → Bacteria → Proteobacteria	1368	Open in IMG/M
3300032829\|Ga0335070_10019866	All Organisms → cellular organisms → Bacteria	7774	Open in IMG/M
3300033004\|Ga0335084_11115840	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300033406\|Ga0316604_10341830	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300033406\|Ga0316604_10354929	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300033408\|Ga0316605_12504811	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300033413\|Ga0316603_10553767	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300033413\|Ga0316603_11200016	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300033416\|Ga0316622_100480215	All Organisms → cellular organisms → Bacteria	1412	Open in IMG/M
3300033419\|Ga0316601_101078831	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300033433\|Ga0326726_10294799	All Organisms → cellular organisms → Bacteria	1520	Open in IMG/M
3300033433\|Ga0326726_11283837	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300033434\|Ga0316613_10435144	Not Available	885	Open in IMG/M
3300033434\|Ga0316613_10637317	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300033480\|Ga0316620_11011625	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300033480\|Ga0316620_11996441	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300033482\|Ga0316627_100777238	Not Available	901	Open in IMG/M
3300033482\|Ga0316627_102315757	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300033485\|Ga0316626_10208593	All Organisms → cellular organisms → Bacteria	1541	Open in IMG/M
3300033485\|Ga0316626_11260297	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300033486\|Ga0316624_11349310	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300033486\|Ga0316624_11701796	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300033486\|Ga0316624_11965412	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300033487\|Ga0316630_11036558	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300033487\|Ga0316630_11614557	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300033488\|Ga0316621_10399522	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus	936	Open in IMG/M
3300033489\|Ga0299912_10526845	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300033489\|Ga0299912_10868039	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300033489\|Ga0299912_11279848	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300033493\|Ga0316631_10129201	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300033513\|Ga0316628_100881672	All Organisms → cellular organisms → Bacteria	1183	Open in IMG/M
3300033513\|Ga0316628_101846124	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300033513\|Ga0316628_102741861	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300033521\|Ga0316616_101211722	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300033521\|Ga0316616_101493693	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300034090\|Ga0326723_0563125	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300034100\|Ga0373910_0142042	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	633	Open in IMG/M
3300034100\|Ga0373910_0154684	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300034191\|Ga0373909_0228972	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.20%
Engineered	Engineered	2.80%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	57.94%
Terrestrial	Environmental → Terrestrial	39.25%
Bioremediation	Engineered → Bioremediation	2.80%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	50.47%
Soil	Environmental → Terrestrial → Soil	36.45%
Marine	Environmental → Aquatic → Marine	6.54%
Peat	Environmental → Terrestrial → Peat	2.80%
Metal	Engineered → Bioremediation → Metal	2.80%
Sediment	Environmental → Aquatic → Sediment	0.93%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	28.97%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	22.43%
Sediment	Environmental → Aquatic → Freshwater → Sediment	16.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	6.54%
Lentic	Environmental → Aquatic → Freshwater → Lentic	5.61%
Lake	Environmental → Aquatic → Freshwater → Lake	5.61%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	5.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.80%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	2.80%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Loam	Environmental → Terrestrial → Soil → Loam	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	28.04%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	16.82%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	16.82%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	5.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.61%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	5.61%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.67%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	4.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.80%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	27.10%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	12.15%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	8.41%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	5.61%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.61%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	4.67%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	4.67%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	3.74%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.74%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	2.80%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	2.80%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.80%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	2.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.93%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.93%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003910	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW	Environmental	Open in IMG/M
3300004051	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D2	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009171	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009614	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_150	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009634	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300014308	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018070	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1	Environmental	Open in IMG/M
3300022185	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023311	Combined Assembly of Gp0281739, Gp0281740, Gp0281741	Environmental	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025507	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)	Environmental	Open in IMG/M
3300027713	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027723	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027726	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027740	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214 HiSeq	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027955	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027979	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300030613	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227	Environmental	Open in IMG/M
3300031331	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-150	Environmental	Open in IMG/M
3300031355	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-70	Environmental	Open in IMG/M
3300031554	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-130	Environmental	Open in IMG/M
3300031563	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-40	Environmental	Open in IMG/M
3300031650	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-150	Environmental	Open in IMG/M
3300031652	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-40	Environmental	Open in IMG/M
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental	Open in IMG/M
3300032046	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40	Environmental	Open in IMG/M
3300032069	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033406	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_CT	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M
3300033493	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D3_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034100	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B4A4.2	Engineered	Open in IMG/M
3300034191	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B4A4.1	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26437J51864_100987361	3300003910	Freshwater Lake Sediment	MDDIPAEKMFGQFPEQARKEGRLKGGCEMDLLIRHDFVNQNKHAIGEKKREQVFQDPLNRRPY
Ga0055492_100423073	3300004051	Natural And Restored Wetlands	MNDIPAEKMFGQFPEQASKKRRLKSGFEADPLIRDDFVNQKKHANGEKEREQVF*
Ga0069718_152062062	3300004481	Sediment	MDNIPAEKMFGHFPEQASKKSRLKGGYEVDLLIRYDSVNQNKHAIGEKK
Ga0079037_1013016282	3300006224	Freshwater Wetlands	MDDIEAKKMLGQFPEQARKEGRLKGGREVDLLTRYDSVNQNKHAI
Ga0079037_1015731442	3300006224	Freshwater Wetlands	MDDIPAKKMFGQFPEQARKEGCLKGGCEVDSFIRDDFINQHKHAVG
Ga0079037_1021728122	3300006224	Freshwater Wetlands	MDDIPAEKMFGQFPEQARKEGRLKGGCEVDLLTRDDSV
Ga0079037_1022735081	3300006224	Freshwater Wetlands	MDHIPGEKMFGQFPEQARKEGGLKGGCEVDLLIRYDSVNQNKHAIGEKKREQVFQDPLNR
Ga0075520_10618192	3300006795	Arctic Peat Soil	MPGQFPEHARKEGRLKGGFEVDALIGDYFVNQTKHAIGEEEREQVF*
Ga0105106_105662602	3300009078	Freshwater Sediment	MEDIPAEKMFGQFPEQARNEGRLKGGCEMDPLIRDDFVNQNK
Ga0102851_113645071	3300009091	Freshwater Wetlands	MDDIPGEKMFGQFPEQARKEGRLKGGCEMDPFIVDD
Ga0102851_119500621	3300009091	Freshwater Wetlands	MDDIPTEKMFGQFPEQARKEGRLKGGGEMDPLIRDDFVNQNKHAIAEKKREQVFQDPLNRRPYRHENPSLV
Ga0115026_108820041	3300009111	Wetland	MGDIPGKEMFGQFPEQASKKSCLKGGSEVNSLIRYDFVNQKKHAIGEEEREQVF*
Ga0115026_114019041	3300009111	Wetland	MDDIPGKKMFRQLPEQASKEGCLKGGFDVDPLIRDDFVNQGKHAIAEEKREQVF*
Ga0115027_103055551	3300009131	Wetland	MDDIPGEKMFGQFPEQARKEGRLKGGCEMDPFIGDDFVNQTKHAKGEEKREQVFQDPLNRRPYRHG
Ga0105094_106691061	3300009153	Freshwater Sediment	MDDIPAEKMFGQFPEQASKKSRLKGGFEVDPLIRDDFVNQKKHAIDEDKREQIFYDPLNR
Ga0105094_109531102	3300009153	Freshwater Sediment	MDDIPAEKMFGQFPEQARKESRLKGGFEVDPLIRDDFVNQKKHATGQEKREQVFQDPLNRRPYRHGNPSLVTL
Ga0105100_105579412	3300009166	Freshwater Sediment	MDDIPAEKMFGQFPEQARKEGRLKGGCEMDPLIRDDFVNQNKYAIGEEKREQVFQ
Ga0105100_105788071	3300009166	Freshwater Sediment	MDDIPAEKMFCQFPEQARKEGGLKGGCEVDLLIRYDFVNQKKYAIGEEKREQVF*
Ga0113563_123543751	3300009167	Freshwater Wetlands	MNDIPAEKVFGQFPEQASKKGRLKGGCEVDPLIRDDFVNQNKHA
Ga0113563_132393721	3300009167	Freshwater Wetlands	MEDVTSEKMFCQFPEQAGKEGRLKGGFEVNYFMGDDFVNTKE
Ga0105101_106256201	3300009171	Freshwater Sediment	MDDIPAEKMFGQFPEQARKEGRLKGECEIDPLMRNDFVNQNNKAEGEEDRQ
Ga0115028_108128871	3300009179	Wetland	MDDIPGEKMFGQFPEQARKEGRLKGGCEMDPFIGDDFVNQTKHAKGEEKREQVF*
Ga0116104_11088581	3300009614	Peatland	MFGQFPEQAAKEGCLKGGFEVDPLIRDDFVNQKKHAIGEGKR
Ga0116111_11413921	3300009616	Peatland	MEDIPGEKAFGQFPEQGSKEGLLKGGREKDLLVRDNSVNQKEHAAGEEKREQVF*
Ga0116124_11506532	3300009634	Peatland	MFGQFPEQAAKEGCLKGGFEVDPLIRDDFVNQKKHAIG
Ga0153915_114047493	3300012931	Freshwater Wetlands	MDDIPAKKMFGQFPEQASKKGRLEGGFEVDPLIRDDFVNQKKHAIGQEKREQVF*
Ga0153915_121687621	3300012931	Freshwater Wetlands	MDDIPGEKMFGQFPEQACKKSRLKGGLEVDPLIRDDLVNQKKHATGEEKREQVF*
Ga0153915_127383041	3300012931	Freshwater Wetlands	MDDIPAEKMFGQFPQQASKKSRLKGGFEVDPLIRDDFVNQKKHAIGEEEREQVF*
Ga0153916_119214702	3300012964	Freshwater Wetlands	MDDIPAEKMFGHFPEQARKKSRLKGGFEVDPLIRDDFVNQKKHAIGEEKREQIF*
Ga0153916_122186321	3300012964	Freshwater Wetlands	MDDIPAEKVFGQFPEQASKKSRLKGGFEMDPLIRYDFVNQQKHAIGEEKREQVF*
Ga0075354_11426221	3300014308	Natural And Restored Wetlands	MDDIPGEKMFGQFIEQASKEGRLKGGREVDLLAGDDPVNQNKHTIGEKKREQVFQDPLNRRPYRHGN
Ga0182019_100236171	3300014498	Fen	MDHVPAEKVLGQFPEQAGKKGRLKGGFEVDPLIGDDFVNQKEHAIGEEEREQVF
Ga0187850_105385621	3300017941	Peatland	MEDIPGKKVFGQFPEQAGKEGRLKDGRKKDPFIGDDFVNQKEHAAG
Ga0187876_11729972	3300018003	Peatland	MEDIPGEKMFGQLPEQGNKEGRLKGGREKDLLVRDNFVNQKEHAAGEDKRKQVF
Ga0187878_10801001	3300018005	Peatland	MDDIPGEKMFGQFPKQARDESRLKGGFDVDLLIRDNFVNQKKHTKGEDKLDNI
Ga0187860_12475242	3300018014	Peatland	MEDIPGKKVFGQFPEQAGKEGPLKGGREEDLLIGGDFVDQKEHAAGEGKREQGFDGHRS
Ga0187869_102357491	3300018030	Peatland	MEDIPGKKVFGQFPEQAGKEGPLKGGREEDLLIGGDFVD
Ga0187858_101958171	3300018057	Peatland	MEDIPGEKMFGQLPEQGNKEGRLKGGREKDLLVRDN
Ga0184631_103823911	3300018070	Groundwater Sediment	MDDIPAEKMFGQFPEQASKKSRLKGGFEVDPLIRNDFVNQKKHAIGQE
Ga0079039_16650982	3300022185	Freshwater Wetlands	MNDIPAEKMFGQFPEHSGKKGRLKGGFEVDLLVRDDFENQK
Ga0256681_107847231	3300023311	Freshwater	MDHVPAEKVLGQFPEQAGKKGRLKGGFEVDPLIGDD
Ga0209641_105402422	3300025322	Soil	MDDIPAEKMFGQFPEQASKEGRLKGGFEVDPLIRDDFVNQ
Ga0208188_10681082	3300025507	Peatland	MEDIPGEKMFGQLPEQGNKEGRLKGGREKDLLVRDNSVNQKEHAAGEEKREQVF
Ga0209286_12288432	3300027713	Freshwater Sediment	MDDIPAEKMFGQFPEQARKQGRLKGGREVDPPIRDDFVNQNKHA
Ga0209286_12319412	3300027713	Freshwater Sediment	MDDIPAEKMLGQFPEQARKEGCLKGGCEVDPLIRDDFVNQNKHAVGEKEREQVFQDPLNR
Ga0209703_12073462	3300027723	Freshwater Sediment	MDDIPAEKMFGQFPEQARKEGRLKGGCEMNPLIGDDFVNQTKHAKGEEKREQVFQDPLNRRPYCH
Ga0209285_100283942	3300027726	Freshwater Sediment	MDDIPGEKMFGQFPEQASKKSRLKGGCEVDPLIRDDFVNQKKHAIGED
Ga0209285_101689662	3300027726	Freshwater Sediment	MDDIPAEKMFGQFPEQARKEGCLKGGCEVDPLIRDDFVNQNK
Ga0214474_12769951	3300027740	Soil	MDDIPGEKMFGQFPEQASKKSRLKSGFEVDPLIRYDFVN
Ga0209450_105078271	3300027885	Freshwater Lake Sediment	MDDIPCEKMLGQFPEQARKEGRLKGRFDVDLLMGDDFENQKKHAIGEGKREQVF
Ga0209450_105237151	3300027885	Freshwater Lake Sediment	MDDIPGEKMLGQFPEKARKEGRLKGGFDVDLLMGDDFENQKKHAIGEGKREQVF
Ga0209777_100813391	3300027896	Freshwater Lake Sediment	MDDIPGKQMFGHFPEQAGKEGRQKGGFDVDLDIGYDFVNQKKHAIGEEKRKQVFQDPLNRRSDG
Ga0209777_107314471	3300027896	Freshwater Lake Sediment	MEDIPGEKMFGQFPKQAREESRLKRGLVVDPLVRDDFINRIKQAKGEDESE
Ga0209048_100951611	3300027902	Freshwater Lake Sediment	MDDIPAEKMFGQFPEQAGKKSRLKGGFEVDPLIGNDFVNQKEHAIGKEEREQVFQDPLNRRP
Ga0209078_12208911	3300027955	Freshwater Sediment	MDDIPAEKMLGQFPEQARKEGCLKGGCEVDPLIRDDFVNQNKHAVGEKEREQVFQDPLNRRPYRHGD
Ga0209705_100994822	3300027979	Freshwater Sediment	MDDIPAEKMFGQFPEQASKKSRLKGGFEVDPLIRD
Ga0299915_100648641	3300030613	Soil	MDDIPAEKMFGQFPEQARKEGRLKGGCEVDLLIRYDSVNQNKHAVGEKKGEQVFQDPLNGRPY
Ga0307432_10670832	3300031331	Salt Marsh	MDNKQAEKMFGQFPEKARKEGRLKGDCEVDLLLWYDSVNQNKHAIAEKKREQVFQDPLNRRPYRHGNPSLVTLQEGDHGA
Ga0307421_10856692	3300031355	Salt Marsh	MDNKQAEKMFGQFPEKARKEGRLKGDCEVDLLLWYDSVNQNKHAIAEKKREQVFQDPL
Ga0315544_11155932	3300031554	Salt Marsh Sediment	MDDKQAEKMFGQFPEKARKEGRLKGDCEVDLLLWYDSVNQNKHAIAEKEREQVFQNPLNR
Ga0307436_11553842	3300031563	Salt Marsh	MDDKQAEKMFGQFPEKARKEGRLKGDCEVDLLLWYDSVNQNKHAIAEKEREQVFQDPLNRRPYRHGNPPLV
Ga0315539_12300872	3300031650	Salt Marsh Sediment	MFGQFPEKARKEGRLKGDCEVDLLLWYDSVNQNKHAIAEKEREQVFQNPLNRRPY
Ga0315553_104470132	3300031652	Salt Marsh Sediment	MDDKQAEKMFGQFPEKARKEGRLKGDCEVDLLLWYDSVNQNKHAIAEKEREQVFQDPLNRRPYRHGNPPLVTLQE
Ga0315291_101313543	3300031707	Sediment	MNDIPAEKMFSQFPEQARKEGSLKGGCEVDPLIRDDFVNQTKHAKDEKK
Ga0214473_102311163	3300031949	Soil	MDDIPGEKMFGQFPEQAREEGRLKGGCEMDPLIRDDFVNRNKHAIGKEKREQVV
Ga0315294_105158602	3300031952	Sediment	MNDIPAEKMFSQFPEQARKEGRLKGGCEVDPLIRDDFVNQTKHAKGEEKREQVF
Ga0315289_105585531	3300032046	Sediment	MNDIPAEKMFSQFPEQARKEGSLKGGCEVDPLIRDDFVNQTKHA
Ga0315282_101688811	3300032069	Sediment	MSHKKRVLGEMDDIPGEKMFGQFPEQASKKSRLKSGCEVNPLIRDDFVNQKKHATGQEKREQVF
Ga0315282_102161451	3300032069	Sediment	MDDIPGEKMFGQLPEQASKKGRLKGGFEVDPLMRDDFVNQKKHAKGEGKR
Ga0335070_100198665	3300032829	Soil	MEDIPAEKIFSQFAEQARKEGHLKGGFDVDLFIRGDFVNRKKHAIGEEKREQVF
Ga0335084_111158401	3300033004	Soil	MDDIQAEKMLSQFPEQARKEGRLKGGREVDLLIRYDSVNQNKHAIGEKK
Ga0316604_103418302	3300033406	Soil	MDDIQAEKMFGQLPEQARKEGRLKSGGEVDLLTRDDSVNQNKDAIGEKKREQVFQDPLNR
Ga0316604_103549292	3300033406	Soil	MDDIPAEKMFGQFPEQARKEGRLKGGCEMDPLIRDDFVNQNKRAIGEEKREQVFQDPLNRRPYRHENPALVTLQ
Ga0316605_125048112	3300033408	Soil	MDDIPAEKMFGQFPEQARKEGRLKGGCEMDPLIRDDFVNQ
Ga0316603_105537672	3300033413	Soil	MDDIPGEEMFGQFPEQARKEGRLKCGFEVDLLIRDDFINQKKHAIGEEKREQVFQDPLNRRPYRHGNPSLVTLQKGDNGAK
Ga0316603_112000162	3300033413	Soil	MDDIPGEKMFGQFPEQARKQGRLKGGCEMDPLIRDDFVNQNKHAIGEEKREQ
Ga0316622_1004802151	3300033416	Soil	MDDIPAEKMFGQFPEQARKEGRLKGGCEVDLLIRYDSVNKNK
Ga0316601_1010788312	3300033419	Soil	MGDIPGKEMFGQFPEQASKKSCLKGGSEVNSLIRYDFVNQKKHAIGEE
Ga0326726_102947991	3300033433	Peat Soil	MDDIQAEKMLGQFPEQARKEGRLKGGCEIDLLIRYDSVNQNKHAIGENKREQVFQDPLNRRPYRH
Ga0326726_112838371	3300033433	Peat Soil	MDDIPGEKMFGQFPEQACKKSRLKGGFEVDPLIRDDLVNQKKHAKGEEKRE
Ga0316613_104351441	3300033434	Soil	MDDIPAEKMFGQFPEQARKEGRLKGGCEMDPLIRDDFVN
Ga0316613_106373172	3300033434	Soil	MDHIPPEKMFGQFPEQARKQGGLKGGCEMDPLIRDDFVNQNKHAIGEKKRQ
Ga0316620_110116251	3300033480	Soil	MNDIPAEKMFGQFPEQASKKGSLKGGLEVDLLIRNDFENQKKHATGQEEREQVFQDPLDRRSYRHGNLSVVTL
Ga0316620_119964411	3300033480	Soil	MDDIPAEKMFGQFPEQASKKSRLKGGCEVDLLTRDDSVNQNKHAIGQKKGEQ
Ga0316627_1007772381	3300033482	Soil	MDDIPAEKMFGQFPEQARKEGRLKGGCEMDLLIRHDFVNQN
Ga0316627_1023157571	3300033482	Soil	MDDIPTEKMFGQFPEQARKEGRLKGGGEMDPLIRDDFVNQNKHAIA
Ga0316626_102085931	3300033485	Soil	MDDIPAEKMFGQFPEQARKEGRLKGGCEMDPLMRDDFVNQNKYARGEEKREQVFQDPLNRRPYRQENP
Ga0316626_112602971	3300033485	Soil	MDDIPGEKMFGQFPEQARKEGRLKGGFEVDPLIRDDFVNQTKHAKGEEKR
Ga0316624_113493102	3300033486	Soil	MDDIPAEKMFGQFPEQARKEGRLKGGCEMNPLIGD
Ga0316624_117017961	3300033486	Soil	MDDIPGEKMFGQFPKQAGKKGCLKGGFDVNPFVRYDFVNQRKHAIGEKKREQVFQDP
Ga0316624_119654121	3300033486	Soil	MDDIPGEKMFGQFPEQASKEGRLKGGFELDPPIRDDFVNQ
Ga0316630_110365581	3300033487	Soil	MDDIPAEKMFGQFPEQARKEGRLKGGCEVDLLTRDDSVNQNKH
Ga0316630_116145572	3300033487	Soil	MDDIPAEKMFGQFPEQARKEGRLKGGCEMDPLIRDDFVNQNKYARGEEKR
Ga0316621_103995221	3300033488	Soil	MDDIPGEKMLGKFPEQACKERSLKGGLEVDLLIGDDFV
Ga0299912_105268451	3300033489	Soil	MDNVPAEKMFGHFPEQGSKNGRLKGGCEVDPLIRDDFVNQKKHATGQEKREQVFQDPLNRRP
Ga0299912_108680391	3300033489	Soil	MDDIPAEKMFGQFPEQARKEGRLKGGCEVDPLIGDDFVNQTKH
Ga0299912_112798481	3300033489	Soil	MDDIPGEKMFGQFPEQASKKSRLKGGCEVDLLIRDDFVNQKKHAIGEDKREQI
Ga0316631_101292011	3300033493	Soil	MDDIPAEKMFGQFPEQARKEGRLKGGCEVDSLIRDDFVNQTK
Ga0316628_1008816721	3300033513	Soil	MGDIPGKKMFGQFPEQASKEGRRKGGFEVDSLIRYDFVNQKKHAIGEEER
Ga0316628_1018461242	3300033513	Soil	MDDIPAEKMFGQFPEQARKEGRLKGGCEVDLLIRYDSVNQNKHAKGEKKREQVFQD
Ga0316628_1027418611	3300033513	Soil	MDDIPAEKMFGQFPEQARKEGRLKGGCEMDPLIRDDFVDQNKHAIGEEKREQVFQDPLNRRP
Ga0316616_1012117222	3300033521	Soil	MDDIPAEKMFGQFPEQARKEGRLKGGCEMDPLMRDDFVNQNKYARGEEEREQVFQDPLNRRPYRHENPSLVS
Ga0316616_1014936931	3300033521	Soil	MDDIPAEKMFGQFPEQARKEGRLKGGCEMDPLIRDDFVNQKKHAIG
Ga0326723_0563125_84_248	3300034090	Peat Soil	MDDIPAEKVFGHFPEQASKKSRLKGGFEVDPFIRDDFVNQEKHATGQEKREQVF
Ga0373910_0142042_455_631	3300034100	Sediment Slurry	MDDIPAEKMFGHFPEQASKKSRLKGGFEVDPLIRDDFVNQKKHAIGEEKREQVFQDPLN
Ga0373910_0154684_361_525	3300034100	Sediment Slurry	MDDIPGEKMFGQFPEQASKKSRLKGGFEVDPLIRDDLVNQKKHTTGQEKREQVF
Ga0373909_0228972_275_439	3300034191	Sediment Slurry	MEDIPGEKIFGQFPEQASKEGRLKGGYEVDLLIRDDFVNRKKHAIGEEKREQVF

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092298

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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