Metagenome / Metatranscriptome Family F092262

Basic Information
Family ID	F092262
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	49 residues
Representative Sequence	EASLALDNHWRAHVALGEMLARLDRHDEANAHLSAALKLALAELERQ
Number of Associated Samples	98
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.96 %
% of genes near scaffold ends (potentially truncated)	96.26 %
% of genes from short scaffolds (< 2000 bps)	87.85 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Most Common Taxonomy
Group	Bacteria (73.832 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (8.411 % of family members)
Environment Ontology (ENVO)	Unclassified (34.579 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.860 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.67% β-sheet: 0.00% Coil/Unstructured: 45.33%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00970	FAD_binding_6	28.97
PF00175	NAD_binding_1	26.17
PF03401	TctC	6.54
PF00528	BPD_transp_1	2.80
PF00496	SBP_bac_5	1.87
PF03167	UDG	1.87
PF02810	SEC-C	1.87
PF01370	Epimerase	1.87
PF05523	FdtA	0.93
PF13480	Acetyltransf_6	0.93
PF12161	HsdM_N	0.93
PF02776	TPP_enzyme_N	0.93
PF13460	NAD_binding_10	0.93
PF01694	Rhomboid	0.93
PF00111	Fer2	0.93
PF00535	Glycos_transf_2	0.93
PF09834	DUF2061	0.93
PF13489	Methyltransf_23	0.93
PF02604	PhdYeFM_antitox	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	6.54
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	1.87
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	1.87
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	1.87
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.93
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.83 %
Unclassified	root	N/A	26.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.83 %
Unclassified	root	N/A	26.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.83 %
Unclassified	root	N/A	26.17 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	66.36 %
Unclassified	root	N/A	26.17 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	54.21 %
Unclassified	root	N/A	26.17 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.17 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	7.48 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.67 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.80 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.87 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.17 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.48 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.87 %
Gallionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	1.87 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.17 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.48 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.87 %
Candidatus Nitrotoga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga	1.87 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_107522221	Not Available	517	Open in IMG/M
3300004157\|Ga0062590_102367832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	560	Open in IMG/M
3300005181\|Ga0066678_10283241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1080	Open in IMG/M
3300005205\|Ga0068999_10095147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	586	Open in IMG/M
3300005328\|Ga0070676_10075572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2032	Open in IMG/M
3300005332\|Ga0066388_101708534	All Organisms → cellular organisms → Bacteria	1114	Open in IMG/M
3300005333\|Ga0070677_10200625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	962	Open in IMG/M
3300005333\|Ga0070677_10828702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	530	Open in IMG/M
3300005339\|Ga0070660_101374230	All Organisms → cellular organisms → Bacteria → Proteobacteria	600	Open in IMG/M
3300005341\|Ga0070691_10862066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	556	Open in IMG/M
3300005344\|Ga0070661_100459704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1014	Open in IMG/M
3300005356\|Ga0070674_100375580	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300005364\|Ga0070673_102381241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	503	Open in IMG/M
3300005365\|Ga0070688_100699020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	785	Open in IMG/M
3300005434\|Ga0070709_11095727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	637	Open in IMG/M
3300005436\|Ga0070713_102218404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	532	Open in IMG/M
3300005439\|Ga0070711_101129203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	676	Open in IMG/M
3300005539\|Ga0068853_101722048	All Organisms → cellular organisms → Bacteria → Proteobacteria	608	Open in IMG/M
3300005548\|Ga0070665_100014675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	7861	Open in IMG/M
3300005577\|Ga0068857_100009456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	8464	Open in IMG/M
3300005616\|Ga0068852_101461766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	706	Open in IMG/M
3300005840\|Ga0068870_10564886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	768	Open in IMG/M
3300005842\|Ga0068858_100348365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1419	Open in IMG/M
3300006237\|Ga0097621_100582817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1021	Open in IMG/M
3300006237\|Ga0097621_102325617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	513	Open in IMG/M
3300006358\|Ga0068871_101181990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	717	Open in IMG/M
3300006358\|Ga0068871_101535107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	630	Open in IMG/M
3300006604\|Ga0074060_11516217	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300006804\|Ga0079221_11437037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	550	Open in IMG/M
3300006871\|Ga0075434_100553221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1170	Open in IMG/M
3300006894\|Ga0079215_10647775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	701	Open in IMG/M
3300006904\|Ga0075424_102507498	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300009036\|Ga0105244_10379172	Not Available	651	Open in IMG/M
3300009053\|Ga0105095_10210814	Not Available	1064	Open in IMG/M
3300009100\|Ga0075418_10487879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1322	Open in IMG/M
3300009162\|Ga0075423_10389652	Not Available	1462	Open in IMG/M
3300009171\|Ga0105101_10082989	All Organisms → cellular organisms → Bacteria → Proteobacteria	1556	Open in IMG/M
3300009797\|Ga0105080_1016023	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300010366\|Ga0126379_12249649	Not Available	646	Open in IMG/M
3300010371\|Ga0134125_12378735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	576	Open in IMG/M
3300010375\|Ga0105239_10345528	All Organisms → cellular organisms → Bacteria → Proteobacteria	1679	Open in IMG/M
3300010376\|Ga0126381_100529339	Not Available	1667	Open in IMG/M
3300010396\|Ga0134126_12767449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	532	Open in IMG/M
3300010400\|Ga0134122_12332343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	581	Open in IMG/M
3300010401\|Ga0134121_13237018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	504	Open in IMG/M
3300012533\|Ga0138256_10539476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	936	Open in IMG/M
3300012905\|Ga0157296_10022563	Not Available	1251	Open in IMG/M
3300012911\|Ga0157301_10125144	Not Available	788	Open in IMG/M
3300012984\|Ga0164309_10491356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	937	Open in IMG/M
3300013100\|Ga0157373_10359274	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300013100\|Ga0157373_10616352	Not Available	791	Open in IMG/M
3300013105\|Ga0157369_10416047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1394	Open in IMG/M
3300013105\|Ga0157369_11322542	All Organisms → cellular organisms → Bacteria → Proteobacteria	734	Open in IMG/M
3300014317\|Ga0075343_1101905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	656	Open in IMG/M
3300015371\|Ga0132258_11464133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1725	Open in IMG/M
3300015373\|Ga0132257_104642693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	500	Open in IMG/M
3300018027\|Ga0184605_10273597	All Organisms → cellular organisms → Bacteria → Proteobacteria	767	Open in IMG/M
3300018476\|Ga0190274_10886710	Not Available	958	Open in IMG/M
3300021445\|Ga0182009_10856311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	500	Open in IMG/M
3300025878\|Ga0209584_10162842	Not Available	843	Open in IMG/M
3300025907\|Ga0207645_10082406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2062	Open in IMG/M
3300025907\|Ga0207645_10988707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	570	Open in IMG/M
3300025917\|Ga0207660_11088742	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300025920\|Ga0207649_10241724	Not Available	1296	Open in IMG/M
3300025930\|Ga0207701_10045450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4064	Open in IMG/M
3300025944\|Ga0207661_10359308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1315	Open in IMG/M
3300025960\|Ga0207651_11899553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	535	Open in IMG/M
3300026089\|Ga0207648_11653494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	602	Open in IMG/M
3300027682\|Ga0209971_1016798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1735	Open in IMG/M
3300027775\|Ga0209177_10089105	Not Available	957	Open in IMG/M
3300027831\|Ga0209797_10026512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2636	Open in IMG/M
3300027850\|Ga0209591_10265729	Not Available	1301	Open in IMG/M
3300027890\|Ga0209496_10131784	All Organisms → cellular organisms → Bacteria → Proteobacteria	1118	Open in IMG/M
3300027899\|Ga0209668_10162949	All Organisms → cellular organisms → Bacteria	1362	Open in IMG/M
3300028381\|Ga0268264_11662270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	649	Open in IMG/M
3300028587\|Ga0247828_10562179	Not Available	689	Open in IMG/M
3300028652\|Ga0302166_10021793	Not Available	1255	Open in IMG/M
3300028739\|Ga0302205_10142478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	613	Open in IMG/M
3300028868\|Ga0302163_10193672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	560	Open in IMG/M
3300029984\|Ga0311332_10114874	All Organisms → cellular organisms → Bacteria → Proteobacteria	1968	Open in IMG/M
3300030010\|Ga0302299_10403365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	698	Open in IMG/M
3300030052\|Ga0302217_10157369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	538	Open in IMG/M
3300030339\|Ga0311360_10999379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	661	Open in IMG/M
3300031232\|Ga0302323_100007335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	9113	Open in IMG/M
3300031726\|Ga0302321_100628653	Not Available	1198	Open in IMG/M
3300031795\|Ga0318557_10049932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1756	Open in IMG/M
3300031873\|Ga0315297_10677321	Not Available	864	Open in IMG/M
3300031873\|Ga0315297_11272081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	601	Open in IMG/M
3300031941\|Ga0310912_11269473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga	559	Open in IMG/M
3300031996\|Ga0308176_10053401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3330	Open in IMG/M
3300031997\|Ga0315278_10969596	Not Available	849	Open in IMG/M
3300031999\|Ga0315274_11060294	Not Available	821	Open in IMG/M
3300031999\|Ga0315274_11634742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	603	Open in IMG/M
3300032008\|Ga0318562_10642363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga	612	Open in IMG/M
3300032012\|Ga0310902_11250393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	524	Open in IMG/M
3300032143\|Ga0315292_11034265	Not Available	681	Open in IMG/M
3300032256\|Ga0315271_10584216	Not Available	953	Open in IMG/M
3300032397\|Ga0315287_11887215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	662	Open in IMG/M
3300033233\|Ga0334722_11139027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	547	Open in IMG/M
3300033419\|Ga0316601_100772323	Not Available	948	Open in IMG/M
3300033486\|Ga0316624_11687258	Not Available	585	Open in IMG/M
3300033551\|Ga0247830_11119102	Not Available	629	Open in IMG/M
3300034129\|Ga0370493_0019627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2018	Open in IMG/M
3300034169\|Ga0370480_0013070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2915	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.55%
Host-Associated	Host-Associated	35.51%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	47.66%
Plants	Host-Associated → Plants	35.51%
Aquatic	Environmental → Aquatic	15.89%
Wastewater	Engineered → Wastewater	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	39.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.50%
Freshwater	Environmental → Aquatic → Freshwater	14.02%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.28%
Peat	Environmental → Terrestrial → Peat	8.41%
Roots	Host-Associated → Plants → Roots	3.74%
Marine	Environmental → Aquatic → Marine	0.93%
Sediment	Environmental → Aquatic → Sediment	0.93%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	24.30%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.28%
Lake	Environmental → Aquatic → Freshwater → Lake	8.41%
Loam	Environmental → Terrestrial → Soil → Loam	8.41%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	8.41%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.41%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.61%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.74%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.87%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%
Ice	Environmental → Aquatic → Freshwater → Ice	0.93%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Sand	Environmental → Terrestrial → Soil → Sand	0.93%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.28%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	8.41%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	8.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.54%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.74%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.74%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	3.74%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.87%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.93%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	0.93%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.93%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	8.41%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	7.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.74%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	3.74%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.87%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.87%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.93%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.93%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.93%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	0.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.93%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Active Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005205	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009171	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009797	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_10_20	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012533	Active sludge microbial communities from wastewater in Klosterneuburg, Austria - KNB2014incub_MG	Engineered	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014317	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D1	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025878	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027831	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027850	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01 (SPAdes)	Environmental	Open in IMG/M
3300027890	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028652	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_3	Environmental	Open in IMG/M
3300028739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E1_3	Environmental	Open in IMG/M
3300028868	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_3	Environmental	Open in IMG/M
3300029984	I_Fen_E1 coassembly	Environmental	Open in IMG/M
3300030010	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_4	Environmental	Open in IMG/M
3300030052	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_3	Environmental	Open in IMG/M
3300030339	III_Bog_N1 coassembly	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034129	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_16	Environmental	Open in IMG/M
3300034169	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1075222212	3300000559	Soil	SLAHEDAWRTRVALGELFARLGREHDANVHLAAALKLALSELDPE*
Ga0062590_1023678322	3300004157	Soil	KAQSYLEASLAHDDAWRTRVALGELFARLGSEHEANVHLAAALKLALSELEP*
Ga0066678_102832411	3300005181	Soil	AQTYLEASLALDNSWRANLALGEMQANLGRTDEANAHLAAALKLALAALNRR*
Ga0068999_100951471	3300005205	Natural And Restored Wetlands	YFEASLALDDAFETRVALGELFARLDRTDEANAQLAAALKLALAELRARD*
Ga0070676_100755723	3300005328	Miscanthus Rhizosphere	LEASLALDNHWRAHVALAELFAKLDRPDEANAHRSAALTLALAELAREK*
Ga0066388_1017085342	3300005332	Tropical Forest Soil	EASLALDDAYETRVALGELFAELGRTDEANTQLAAALRLALAELRERA*
Ga0070677_102006252	3300005333	Miscanthus Rhizosphere	TYLEASLALDDNWRTHLALGELHGRLDRSDLANTHLAAALKLSLVELERPGR*
Ga0070677_108287022	3300005333	Miscanthus Rhizosphere	SLAVEDGWRTRVALGELFARLGRVSDANAQLALALKLAIKELNRG*
Ga0070660_1013742301	3300005339	Corn Rhizosphere	TYLEASLALDNHWRTHVALGELFATLGRTDEANAHLAAALRLALEALRAPRH*
Ga0070691_108620661	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	SLALDNHWRAHVALGEMLAKLDRRTEADAHFAAALRLALAELERR*
Ga0070661_1004597042	3300005344	Corn Rhizosphere	YLEASLALDNHWRTHVALGELFTKLGRRDEAQAHLGAALRLALDALTRDEDRGSSV*
Ga0070674_1003755801	3300005356	Miscanthus Rhizosphere	TYFEASVAVEDTWRTRVALGELFARLGRASDANAQLAAALKLAIRELNRS*
Ga0070673_1023812411	3300005364	Switchgrass Rhizosphere	ASLALDNDWRAHLALGEMQAKLNHTDEANAHLAAALKLALVALERRG*
Ga0070688_1006990202	3300005365	Switchgrass Rhizosphere	YLEASLALDNHWRAHVALGEMLARLDRHDEANAHLSAALKLALAELERQ*
Ga0070709_110957271	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LEASLALDNHWRAHVALGELLAELGRHDEANAHLAAALKLALGELTTREG*
Ga0070713_1022184042	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	ALDNHWRAHVALGEMLEKLDRRAEADAHFAAALRLALAELERS*
Ga0070711_1011292032	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	QTYLEASLALDNHWRAHVALGELLAELGRHDEANAHLAAALKLALGELTTREG*
Ga0068853_1017220481	3300005539	Corn Rhizosphere	LEASLALDNHWRAHVALGEMLAKLDRNAEADAHFAAALRLALAELERTIR*
Ga0070665_1000146751	3300005548	Switchgrass Rhizosphere	LEASLALAESWRTHLALGELHAKLGRADEANAHLAAALKLALADLRSKPVEDRG*
Ga0068857_10000945610	3300005577	Corn Rhizosphere	ASLALDNHWRAHVALGEMLAKLDRRTEADAHFAAALRLALAELERR*
Ga0068852_1014617662	3300005616	Corn Rhizosphere	EASLALDNHWRAHVALGEMLARLDRHDEANAHLSAALKLALAELERQ*
Ga0068870_105648862	3300005840	Miscanthus Rhizosphere	LEASLALDDHWRAHVALGEMLGRLGRDEAANSHLASALSLALAELKRRPR*
Ga0068858_1003483651	3300005842	Switchgrass Rhizosphere	YLEASLALDDHWRTHVALGELHARLGNAELANTHLAAALKRSLVELGRAQPSAEA*
Ga0068858_1025127291	3300005842	Switchgrass Rhizosphere	NVWQTRVALGELLVKLGRNDEANAQLAQALKLAIAELNTIRSPG*
Ga0097621_1005828172	3300006237	Miscanthus Rhizosphere	ASVAVEDAWRTRVALGELFARLNRASDASAQLAAALKLAIKELNRN*
Ga0097621_1023256171	3300006237	Miscanthus Rhizosphere	ALDNHWRAHVALGELLAELGRHDEANAHLAAALKLALGELTTREG*
Ga0068871_1011819901	3300006358	Miscanthus Rhizosphere	LALDNHWRAHVALADLFAKLDRPDEANAHRSAALTLALAELAREK*
Ga0068871_1015351072	3300006358	Miscanthus Rhizosphere	ALDNHWRAHVALGEMLAKLDRNAEADAHFAAALRLALAELERTIR*
Ga0074060_115162171	3300006604	Soil	SLALDNHWRAHVALGELLARLGRDDAANAHLATALKLALAELEQVPARNVAV*
Ga0079221_114370372	3300006804	Agricultural Soil	SLALDNHWRAHVALGELLAELGRHDEANAHLAAALKLALGELTTREG*
Ga0075434_1005532212	3300006871	Populus Rhizosphere	QSYLEASLAHEDAWRTRVALGELFARLGREHEANLHLAAALKLALSELEEG*
Ga0079215_106477752	3300006894	Agricultural Soil	AQTYYEASLALDDGWHAHVALGEMLARLGRDQEANAHLAAALKLALSELSDR*
Ga0075424_1025074982	3300006904	Populus Rhizosphere	KAQTYFEASLALDDAYETRVALGELFARLGRTDEANAQLAAALKQALSELRARS*
Ga0105244_103791721	3300009036	Miscanthus Rhizosphere	ASLAIENSWRTRVALGELFARLNRDFDANAQLAAALKLALAELDRG*
Ga0105095_102108141	3300009053	Freshwater Sediment	SLALDNTYRTHVALGELFARLGRHDEANAHLAAALKLALAELGTPG*
Ga0075418_104878793	3300009100	Populus Rhizosphere	SLALDDAWRTHLALGEMLAKLGRHDQANAHLAAALKLALAELERRTG*
Ga0075423_103896522	3300009162	Populus Rhizosphere	YLEASLALDNHWRAHVALGEMLEKLDRHDEANAHLAAALRLALGELERNES*
Ga0105101_100829891	3300009171	Freshwater Sediment	QTYYEASLALDDGWRTRVALGEMLARLGRADAANAHLAAALKLALAELERGAAPR*
Ga0105080_10160231	3300009797	Groundwater Sand	LEASLALDDTWRTRVALGELFGRLGRDSDANAQLAAALKLALAELGK*
Ga0126379_122496491	3300010366	Tropical Forest Soil	KAQSYLEASLAHEDAWRTRVALGELFARLGREHEANVHLAAALKLALSELAES*
Ga0134125_123787351	3300010371	Terrestrial Soil	HVALADLFTKLDRPDEASAHRSAALTLALAELARDE*
Ga0105239_103455281	3300010375	Corn Rhizosphere	QTYLEASLALDNHWRTHVALGELFATLGRTDQANAHLAAALRLAITALDTPAG*
Ga0126381_1005293391	3300010376	Tropical Forest Soil	SLALDDAYETRVALGELFAQLGRTDEANAQLAAALRLALAELRGRG*
Ga0134126_127674491	3300010396	Terrestrial Soil	SLALASSWRTHVALGEMLARLDQHDAANAHLAAALKLALSELRARPAP*
Ga0134122_123323431	3300010400	Terrestrial Soil	TYFEASLAIEDTWRTRVALGEHFAHRGLDGEANIQLAAAFKLALAELRRE*
Ga0134121_132370182	3300010401	Terrestrial Soil	EASLALDDNWRTHLALGELHGRLDRSDLANTHLAAALKLSLVELERPGR*
Ga0138256_105394761	3300012533	Active Sludge	TYYEASLALDDHWRSHVLLGNMLARLGREDEANAHLAAGLKLAIAELGEPGHGR*
Ga0157296_100225631	3300012905	Soil	LEASLALDNHWRAHVALGEMLAKLDRRTEADAHFAAALRLALAELERR*
Ga0157301_101251441	3300012911	Soil	TYLEASLALDNHWRAHVALGEMLAKLDRNAEADAHFAAALRLALAELERR*
Ga0164309_104913561	3300012984	Soil	AQSYLEASLAHEDAWRTRVALGELFARLGREHDANVHLAAALKIALTELEPE*
Ga0157373_103592742	3300013100	Corn Rhizosphere	EASLALDNHWRAHVALGELLAELGRQDEANAHLAAALQLALGELTTREA*
Ga0157373_106163522	3300013100	Corn Rhizosphere	LEASLALDNHWRAHVALGEMLSQLGRHDEANAHLAAALKLALADLSRD*
Ga0157369_104160473	3300013105	Corn Rhizosphere	SLALDNHWRAHVALGEMLAKLDRNAEADAHFAAALRLALAELERTIR*
Ga0157369_113225421	3300013105	Corn Rhizosphere	TYLEASLALDNHWRAHVALGELLAHLGRDDEANAHLAAALKLALGELAARDGG*
Ga0075343_11019051	3300014317	Natural And Restored Wetlands	SLALEDGWRTRVALGELMVRLGRNDEANAHLAAALKLALTELRPPDA*
Ga0157379_109329961	3300014968	Switchgrass Rhizosphere	AVEDTWRTRVALGELFARLGRASDANAQLAAALKLAIRELNRS*
Ga0132258_114641331	3300015371	Arabidopsis Rhizosphere	LALDDACETRVALGDLLARLGRTDDANTQLAAALKLALAELRSRV*
Ga0132257_1046426931	3300015373	Arabidopsis Rhizosphere	SLALDNHWRAHVALGELLTELGRQDEANAHLAAALKLALGELEGRDGV*
Ga0184605_102735971	3300018027	Groundwater Sediment	SLALDHGWRAHLALGEMQAKLGRSDQANAHLAAALRLALAELEQR
Ga0190274_108867101	3300018476	Soil	SLALDDHWRAHVALGEMLGRLGRNEAANSHLASALSLALAELKRRPR
Ga0182009_108563111	3300021445	Soil	SLALDNHWRAHVALGEMLEKLDRNEEADAHLSAALKLALAELERGPPTAASTSGSEQ
Ga0209584_101628422	3300025878	Arctic Peat Soil	SVALDNHWRAHVALGEMQGRLGRDDLANSHLAMALKLALAELKQAPA
Ga0207645_100824063	3300025907	Miscanthus Rhizosphere	YLEASLALDNHWRAHVALAELFAKLDRPDEANAHRSAALTLALAELAREK
Ga0207645_109887072	3300025907	Miscanthus Rhizosphere	MTMTINGVAVDDTWRTRVALGELFARLGRASDANAQLAAALKLAIKELNRN
Ga0207660_110887422	3300025917	Corn Rhizosphere	TYLEASLALDNHWRAHVALGEMLAKLGRTDEANAHLAAALRLALGELTAREG
Ga0207649_102417242	3300025920	Corn Rhizosphere	LDNHWRAHVALADLFTKLDRPDEASAHRSAALTLALAELARDP
Ga0207701_100454501	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	ASLAIENRWRTRVALGELFARLNRDFDANAQLAAALKLALAELDRG
Ga0207661_103593083	3300025944	Corn Rhizosphere	DNHWRAHVALGEMLAKLDRNAEADAHFAAALRLALAELERTIR
Ga0207651_118995532	3300025960	Switchgrass Rhizosphere	EASLALDNHWRAHVALGEMLARLDRHDEANAHLSAALKLALAELERQ
Ga0207648_116534942	3300026089	Miscanthus Rhizosphere	FEASLAVADTWRTRVALGELFARLNRDSDANAQLAAALKLALAELEK
Ga0209971_10167983	3300027682	Arabidopsis Thaliana Rhizosphere	ALDNHWRAHVALADLFTKLDRPDEASAHRSAALTLALAELARNE
Ga0209177_100891052	3300027775	Agricultural Soil	EASVALDNHWRAHVALGELLATLGRHDEANAHLAAALRLALAELSQD
Ga0209797_100265123	3300027831	Wetland Sediment	EASLALADVCRTHVALGELFARLGRSDEANAHLAAALKLALAELGPL
Ga0209591_102657291	3300027850	Freshwater	EASLALDTHWRTQVALGELLARLDRHDEANVHLAAALKLTLATLESRKP
Ga0209496_101317843	3300027890	Wetland	EASLALEDGWRTRVALGEMLARLGRADAANAHLAAALKLALAELEDGAAGR
Ga0209668_101629494	3300027899	Freshwater Lake Sediment	SLALDDHWRAHVLLGNMLARLGRDDEANAHLAAGLRRALADLGASGLAGNQGP
Ga0268264_116622702	3300028381	Switchgrass Rhizosphere	ALDDHWRTHVALGELHGRLGQTALANTHLAAALKRSLVALGNPNFPSALEREP
Ga0247828_105621791	3300028587	Soil	YYEASLALDDGWRARVALGEMLARLGRHDAANAHLAAALKLAIDVLSRDDVPAPFRQ
Ga0302166_100217932	3300028652	Fen	GKAQTYYEASLALDNHWRAHVALGEMHGKLGRDESANSHLATALKLALAELKRTARP
Ga0302205_101424782	3300028739	Fen	LALANDWRTHVALGEMLGQLGRVAEANDHLSAAFKLAIAELESAAA
Ga0302163_101936722	3300028868	Fen	SLALDDHWRTHVALGELHARLDRTDQANAHLAAALSRSLVELGEPRR
Ga0311332_101148741	3300029984	Fen	YFEASLALDDAYETRVALGELFARLGRTDEANAQLAAALKQALAELRSRG
Ga0302299_104033652	3300030010	Fen	GKAQTYYEASLALANDWRTHVALGEMLGQLGRVAEANDHLSAAFKLAIAELESAAA
Ga0302217_101573692	3300030052	Fen	LDNHWRAHVALGEMHGRLGRDESANSHLAAALKLALAELKRTARP
Ga0311360_109993791	3300030339	Bog	LEASLALDDHWRTHVALGELHARLDRTDQANAHLAAALSRSLVELGEPRR
Ga0302323_10000733512	3300031232	Fen	EASLALENHWRAHVALGEMQGRLGRDESANSHLAAALRLALAELKRSARP
Ga0302321_1006286532	3300031726	Fen	SLALDNHWRAHVALGEMHGRLGRDESANSHLAAALKLALAELKRTARP
Ga0318557_100499321	3300031795	Soil	SYYEASLALSDNWRTRIALGELLGQLGRHEDANAHLAAALKLAVAELERAPSA
Ga0315297_106773211	3300031873	Sediment	LEASLALDDTWRTRVALGELFGRLGRDFDANAQLAAALKLALAELEK
Ga0315297_112720812	3300031873	Sediment	EASLALDNHWRTHVALGELHGRLGREDKANPHFATALKLALAELKRPG
Ga0310912_112694732	3300031941	Soil	LALDDRWRVHLALGELHAKLERPDQANAHLAAALKLALDALERRGD
Ga0308176_100534016	3300031996	Soil	ASLALDNHWRAHVALGEMLAQLGRHGEANAHLAAALKLALGELEGREGRV
Ga0315278_109695961	3300031997	Sediment	SLALDNHWRTRVALGEMQARLGREESANSHLAMALKLALAELKRLPR
Ga0315274_110602941	3300031999	Sediment	SLALDDTWRTRVALGELFGRLGRDAEANAQLAAALKLALAALEK
Ga0315274_116347421	3300031999	Sediment	LEASLALDDTWRTRVALGELFGRIGRDADANAQLAAALKLALAELKSGSDTQ
Ga0318562_106423632	3300032008	Soil	TYYEASLALDDRWRVHLALGELHAKLERPDQANAHLAAALKLALDALERRGD
Ga0310902_112503932	3300032012	Soil	QTYFEASLAIENSWRTRVALGELFARLNRDFDANAQLAAALKLALAELDRG
Ga0315292_110342652	3300032143	Sediment	SLALGEGYRAHVALGELFARLGRDGEANTHLAAALKLALAELERA
Ga0315271_105842161	3300032256	Sediment	QTYFEASLALDNHWRAHVALGEMFGRLGRDEAANAHLASALKLALAELRRSPR
Ga0315287_118872151	3300032397	Sediment	LDDTWRTRVALGELCGRIGRDAEANAQLAAALKLALAELKSGSDTPN
Ga0335085_125114342	3300032770	Soil	EASLALEEHWRTHLALGELLARLHQAPAANTHLATALRLALDELRAAEQR
Ga0334722_111390272	3300033233	Sediment	GKAQTYLEASLALDDTWRTRVALGELFARLGRDGEANAHLAAALKLALAELDR
Ga0316601_1007723232	3300033419	Soil	AQTYLEASLAVDDSWRTRVALGELFGRLGRDGEANAQLAAALKLALAELEK
Ga0316624_116872582	3300033486	Soil	SLALDNAYATHVALGELLVRLGRTAEANAHLAAALNLALAALKAERRPEERVAAPG
Ga0247830_111191022	3300033551	Soil	ASLALDNHWRAHVALGEMLAKLDRRTEADAHFAAALRLALAELERR
Ga0370493_0019627_1860_2018	3300034129	Untreated Peat Soil	QTYLEASLALDDRYRTHVALGELFARLGRHDEANAHLAAALREALGELDAGG
Ga0370480_0013070_2747_2914	3300034169	Untreated Peat Soil	KAQTYYEASLALAPSYRTHLGLGELHAGLGRDAEANAHLAAALRLALAELDPPDR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092262

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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