Metagenome Family F092222

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092222
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	62 residues
Representative Sequence	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDS
Number of Associated Samples	37
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.87 %
% of genes near scaffold ends (potentially truncated)	32.71 %
% of genes from short scaffolds (< 2000 bps)	92.52 %
Associated GOLD sequencing projects	33
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (82.243 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (49.533 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (94.393 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.03% β-sheet: 0.00% Coil/Unstructured: 68.97%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00491	Arginase	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
All Organisms	root	All Organisms	17.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
Viruses	superkingdom	All Organisms → Viruses	15.89 %
cellular organisms	root	All Organisms → cellular organisms	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
environmental samples	no rank	All Organisms → Viruses → environmental samples	7.48 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	7.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	7.48 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	7.48 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	7.48 %
Methylophilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	7.48 %
unclassified Methylophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	7.48 %
Methylophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001717\|JGI24522J20083_1007953	Not Available	646	Open in IMG/M
3300001717\|JGI24522J20083_1010410	Not Available	550	Open in IMG/M
3300001735\|JGI24520J20079_1009893	Not Available	549	Open in IMG/M
3300001743\|JGI24515J20084_1002997	All Organisms → Viruses → Predicted Viral	1515	Open in IMG/M
3300002511\|JGI25131J35506_1006435	Not Available	1652	Open in IMG/M
3300002511\|JGI25131J35506_1006926	Not Available	1590	Open in IMG/M
3300002511\|JGI25131J35506_1015170	Not Available	1060	Open in IMG/M
3300002511\|JGI25131J35506_1018206	Not Available	966	Open in IMG/M
3300002511\|JGI25131J35506_1028706	Not Available	764	Open in IMG/M
3300002511\|JGI25131J35506_1030334	Not Available	743	Open in IMG/M
3300002511\|JGI25131J35506_1030618	Not Available	739	Open in IMG/M
3300002511\|JGI25131J35506_1033818	Not Available	704	Open in IMG/M
3300002511\|JGI25131J35506_1035641	Not Available	686	Open in IMG/M
3300002511\|JGI25131J35506_1049514	Not Available	582	Open in IMG/M
3300002511\|JGI25131J35506_1053279	Not Available	561	Open in IMG/M
3300002511\|JGI25131J35506_1053456	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	560	Open in IMG/M
3300002511\|JGI25131J35506_1061740	Not Available	521	Open in IMG/M
3300002511\|JGI25131J35506_1064119	Not Available	512	Open in IMG/M
3300002760\|JGI25136J39404_1021150	All Organisms → Viruses → environmental samples → uncultured virus	1180	Open in IMG/M
3300002760\|JGI25136J39404_1030027	Not Available	994	Open in IMG/M
3300002760\|JGI25136J39404_1032335	Not Available	960	Open in IMG/M
3300002760\|JGI25136J39404_1033591	Not Available	943	Open in IMG/M
3300002760\|JGI25136J39404_1039847	Not Available	866	Open in IMG/M
3300002760\|JGI25136J39404_1089306	Not Available	579	Open in IMG/M
3300002760\|JGI25136J39404_1094144	Not Available	563	Open in IMG/M
3300006304\|Ga0068504_1199927	Not Available	658	Open in IMG/M
3300006306\|Ga0068469_1161924	Not Available	583	Open in IMG/M
3300006306\|Ga0068469_1509314	Not Available	570	Open in IMG/M
3300006308\|Ga0068470_1341635	All Organisms → Viruses → Predicted Viral	1453	Open in IMG/M
3300006308\|Ga0068470_1386100	Not Available	678	Open in IMG/M
3300006308\|Ga0068470_1856538	Not Available	774	Open in IMG/M
3300006310\|Ga0068471_1190760	All Organisms → Viruses → environmental samples → uncultured virus	1984	Open in IMG/M
3300006310\|Ga0068471_1510804	Not Available	1498	Open in IMG/M
3300006310\|Ga0068471_1645765	All Organisms → Viruses → Predicted Viral	1901	Open in IMG/M
3300006311\|Ga0068478_1280223	Not Available	1137	Open in IMG/M
3300006325\|Ga0068501_1172311	Not Available	986	Open in IMG/M
3300006325\|Ga0068501_1216886	Not Available	825	Open in IMG/M
3300006325\|Ga0068501_1231431	Not Available	1191	Open in IMG/M
3300006325\|Ga0068501_1354268	Not Available	722	Open in IMG/M
3300006325\|Ga0068501_1355838	Not Available	1684	Open in IMG/M
3300006325\|Ga0068501_1501969	Not Available	677	Open in IMG/M
3300006326\|Ga0068477_1215562	All Organisms → Viruses → Predicted Viral	1091	Open in IMG/M
3300006326\|Ga0068477_1329073	Not Available	535	Open in IMG/M
3300006336\|Ga0068502_1222307	Not Available	1351	Open in IMG/M
3300006336\|Ga0068502_1355387	All Organisms → Viruses → Predicted Viral	2160	Open in IMG/M
3300006336\|Ga0068502_1364607	Not Available	1771	Open in IMG/M
3300006336\|Ga0068502_1368226	Not Available	1424	Open in IMG/M
3300006336\|Ga0068502_1374223	All Organisms → Viruses → environmental samples → uncultured virus	637	Open in IMG/M
3300006336\|Ga0068502_1416336	Not Available	595	Open in IMG/M
3300006336\|Ga0068502_1496748	Not Available	724	Open in IMG/M
3300006338\|Ga0068482_1361435	All Organisms → Viruses → Predicted Viral	1533	Open in IMG/M
3300006338\|Ga0068482_1484262	Not Available	659	Open in IMG/M
3300006338\|Ga0068482_1811492	Not Available	583	Open in IMG/M
3300006340\|Ga0068503_10333699	Not Available	1950	Open in IMG/M
3300006340\|Ga0068503_10390524	Not Available	3581	Open in IMG/M
3300006340\|Ga0068503_10428419	All Organisms → Viruses → environmental samples → uncultured virus	2442	Open in IMG/M
3300006340\|Ga0068503_10450202	Not Available	792	Open in IMG/M
3300006340\|Ga0068503_10455182	Not Available	2399	Open in IMG/M
3300006340\|Ga0068503_10472234	Not Available	2118	Open in IMG/M
3300006340\|Ga0068503_10488162	Not Available	829	Open in IMG/M
3300006340\|Ga0068503_10528392	Not Available	639	Open in IMG/M
3300006340\|Ga0068503_10576708	Not Available	1166	Open in IMG/M
3300006340\|Ga0068503_10582300	Not Available	797	Open in IMG/M
3300006340\|Ga0068503_10618450	Not Available	584	Open in IMG/M
3300006340\|Ga0068503_10626163	Not Available	635	Open in IMG/M
3300006340\|Ga0068503_10710817	Not Available	979	Open in IMG/M
3300006340\|Ga0068503_11139634	Not Available	1176	Open in IMG/M
3300006341\|Ga0068493_10434917	Not Available	1286	Open in IMG/M
3300006341\|Ga0068493_10507991	All Organisms → Viruses → Predicted Viral	1852	Open in IMG/M
3300006736\|Ga0098033_1218572	Not Available	525	Open in IMG/M
3300006751\|Ga0098040_1074751	All Organisms → Viruses → Predicted Viral	1034	Open in IMG/M
3300006927\|Ga0098034_1106136	Not Available	803	Open in IMG/M
3300017775\|Ga0181432_1174279	Not Available	668	Open in IMG/M
3300021442\|Ga0206685_10177992	Not Available	713	Open in IMG/M
(restricted) 3300024520\|Ga0255047_10032265	Not Available	2757	Open in IMG/M
3300025042\|Ga0207889_1008910	Not Available	946	Open in IMG/M
3300025042\|Ga0207889_1020484	Not Available	618	Open in IMG/M
3300025042\|Ga0207889_1022558	Not Available	589	Open in IMG/M
3300025049\|Ga0207898_1010405	All Organisms → Viruses → environmental samples → uncultured virus	1143	Open in IMG/M
3300025049\|Ga0207898_1016981	Not Available	916	Open in IMG/M
3300025049\|Ga0207898_1039971	Not Available	590	Open in IMG/M
3300025050\|Ga0207892_1030658	Not Available	618	Open in IMG/M
3300025052\|Ga0207906_1011770	All Organisms → Viruses → environmental samples → uncultured virus	1227	Open in IMG/M
3300025069\|Ga0207887_1051845	Not Available	669	Open in IMG/M
3300025069\|Ga0207887_1088341	Not Available	503	Open in IMG/M
3300025125\|Ga0209644_1002158	Not Available	3741	Open in IMG/M
3300025125\|Ga0209644_1011934	Not Available	1821	Open in IMG/M
3300025125\|Ga0209644_1043856	All Organisms → Viruses → Predicted Viral	1015	Open in IMG/M
3300025125\|Ga0209644_1109829	Not Available	654	Open in IMG/M
3300025125\|Ga0209644_1145039	Not Available	566	Open in IMG/M
3300025128\|Ga0208919_1243155	Not Available	525	Open in IMG/M
3300025268\|Ga0207894_1045058	Not Available	771	Open in IMG/M
3300025873\|Ga0209757_10009464	All Organisms → Viruses → environmental samples → uncultured virus	2570	Open in IMG/M
3300025873\|Ga0209757_10045206	Not Available	1285	Open in IMG/M
3300025873\|Ga0209757_10113017	All Organisms → Viruses → environmental samples → uncultured virus	837	Open in IMG/M
3300025873\|Ga0209757_10126598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	792	Open in IMG/M
3300025873\|Ga0209757_10146409	Not Available	738	Open in IMG/M
3300025873\|Ga0209757_10166574	Not Available	693	Open in IMG/M
3300025873\|Ga0209757_10188065	Not Available	652	Open in IMG/M
3300025873\|Ga0209757_10204049	Not Available	626	Open in IMG/M
3300026213\|Ga0208131_1042549	Not Available	1126	Open in IMG/M
3300028039\|Ga0256380_1028428	Not Available	898	Open in IMG/M
3300032278\|Ga0310345_10741666	Not Available	953	Open in IMG/M
3300032820\|Ga0310342_100714471	Not Available	1150	Open in IMG/M
3300032820\|Ga0310342_102392138	Not Available	632	Open in IMG/M
3300034629\|Ga0326756_050748	Not Available	516	Open in IMG/M
3300034654\|Ga0326741_039914	Not Available	805	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	94.39%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.87%
Inlet	Environmental → Aquatic → Marine → Inlet	0.93%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.93%
Pelagic	Environmental → Aquatic → Marine → Pelagic	0.93%
Strait	Environmental → Aquatic → Marine → Strait	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	53.27%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	39.25%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	1.87%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	49.53%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	39.25%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	2.80%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	1.87%
Filtered Seawater	Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater	1.87%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	0.93%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.93%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.93%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.93%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001717	Marine viral communities from the Pacific Ocean - LP-47	Environmental	Open in IMG/M
3300001735	Marine viral communities from the Pacific Ocean - LP-45	Environmental	Open in IMG/M
3300001743	Marine viral communities from the Pacific Ocean - LP-38	Environmental	Open in IMG/M
3300002511	Marine viral communities from the Pacific Ocean - ETNP_2_1000	Environmental	Open in IMG/M
3300002760	Marine viral communities from the Pacific Ocean - ETNP_6_1000	Environmental	Open in IMG/M
3300006304	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_1000m	Environmental	Open in IMG/M
3300006306	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0500m	Environmental	Open in IMG/M
3300006308	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m	Environmental	Open in IMG/M
3300006310	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m	Environmental	Open in IMG/M
3300006311	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_1000m	Environmental	Open in IMG/M
3300006325	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0500m	Environmental	Open in IMG/M
3300006326	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0770m	Environmental	Open in IMG/M
3300006336	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m	Environmental	Open in IMG/M
3300006338	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m	Environmental	Open in IMG/M
3300006340	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m	Environmental	Open in IMG/M
3300006341	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770m	Environmental	Open in IMG/M
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental	Open in IMG/M
3300006751	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG	Environmental	Open in IMG/M
3300006927	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300021442	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015	Environmental	Open in IMG/M
3300024520 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1	Environmental	Open in IMG/M
3300025042	Marine viral communities from the Pacific Ocean - LP-47 (SPAdes)	Environmental	Open in IMG/M
3300025049	Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)	Environmental	Open in IMG/M
3300025050	Marine viral communities from the Pacific Ocean - LP-54 (SPAdes)	Environmental	Open in IMG/M
3300025052	Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)	Environmental	Open in IMG/M
3300025069	Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)	Environmental	Open in IMG/M
3300025125	Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)	Environmental	Open in IMG/M
3300025128	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)	Environmental	Open in IMG/M
3300025268	Marine viral communities from the Deep Pacific Ocean - MSP-114 (SPAdes)	Environmental	Open in IMG/M
3300025873	Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)	Environmental	Open in IMG/M
3300026213	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73 (SPAdes)	Environmental	Open in IMG/M
3300028039	Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 2300m	Environmental	Open in IMG/M
3300032278	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG	Environmental	Open in IMG/M
3300032820	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG	Environmental	Open in IMG/M
3300034629	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600	Environmental	Open in IMG/M
3300034654	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24522J20083_10079532	3300001717	Marine	MLVIKNKVLSWLDITVNRIIDDGMNEKELTYNTALDIVFMNRCHDCGCTPKNDEWSDRTKNLCIDCKDDS*
JGI24522J20083_10104101	3300001717	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEW
JGI24520J20079_10098931	3300001735	Marine	GLTVKVNRIINDSMNEKELTYNTALDIVFMNRCHNCGCTPKNDEWSNRAKNLCVDCKDDS
JGI24515J20084_10029971	3300001743	Marine	LTVKVNRIINDSMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSNRAKN
JGI25131J35506_10064352	3300002511	Marine	LTVIVNRIINDSMNDKEITYNTALDIVFMNRCHECGCTPKNDEWSDRAKNLCMNCKEDDS
JGI25131J35506_10069262	3300002511	Marine	MSFQLKINLYHGLTVKVNRIINDSMNEKELTYNTALNIVFMNKCHNCGCTPKNDEWSDRTKNLCIDCKDDS*
JGI25131J35506_10151702	3300002511	Marine	LTGIVNRIIDDGMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCKNDD*
JGI25131J35506_10182061	3300002511	Marine	LTXKVNRIINDSMNNKEITXNTALDIVFMNKCHDCGCTPKNDEWADRAKNLCIDCKNDD*
JGI25131J35506_10287061	3300002511	Marine	MNNIPLTVKVNRIIDDGMNEKELTYNTALDIVFMNRCHNCGCTPKNDEWSNRAKNLCIDCQDDD*
JGI25131J35506_10303341	3300002511	Marine	VKVNRIIDDGMNKKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDS*
JGI25131J35506_10306182	3300002511	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRTKNLCIDCKNDD*
JGI25131J35506_10338182	3300002511	Marine	MSFQLKINLYHGLTVKVNRIIDDGMNXKELTYNTALDIVFINKCHNCGCTPKNDEWSNRTKNLCIDCQDDS*
JGI25131J35506_10356412	3300002511	Marine	MSFLLKINLYHGLTVKVNRIIDDGMNKKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDS*
JGI25131J35506_10495142	3300002511	Marine	GLTVKVNRIINDSMNEKELTYNTALDIVFMNKCHDCGCTPKNDEWSDRAKNLCIDCEENNE*
JGI25131J35506_10532791	3300002511	Marine	TVKVNRIINDSMNEKELTYNTALDIVFMNKCHDCGCTPKNDEWSDRAKNLCIDCEENNE*
JGI25131J35506_10534563	3300002511	Marine	LTSIVNRIIDDVMNKKEITYNTALDIVFMNKCHECGCTPKNDEWSNREKNLCIDCKNDD*
JGI25131J35506_10617402	3300002511	Marine	HLTSIVNRIIDDSMNKKELTYNTALDIVFMNKCHNCGCTPKNDGWSNREKNLCRDCQEDDE*
JGI25131J35506_10641191	3300002511	Marine	IDNGVNRIINDSMNNKEITYNTALDIVFMNRCHDCGCTPKNDEWSDRAKNLCIDCQDDD*
JGI25136J39404_10211503	3300002760	Marine	VKVNRIINDSMNKRELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDD*
JGI25136J39404_10300271	3300002760	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNRCHDCGCTPKNDEWADRTKNLCIDCKTDEE
JGI25136J39404_10323351	3300002760	Marine	LTVKVNRIIDDGMNNKEITYNTALDIVFMNRCHDCGCTPKNDEWADRAK
JGI25136J39404_10335912	3300002760	Marine	LTVKVNRIINDNMNNKEITYNTALDIVFMNRCHDCGCTPKNDEWSNREKNLCKDCKNDD*
JGI25136J39404_10398471	3300002760	Marine	LTVKVNRIIDDGMNYKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCKNDD*
JGI25136J39404_10893062	3300002760	Marine	LTVKVNRIINDSMNNKEITYNTALDIVXMNRCHDCGCTPKNDEWSDRAKNLCIDCQXDEE
JGI25136J39404_10941442	3300002760	Marine	YHGLTVKVNRIINDSMNEKELTYNTALDIVFMNKCHDCGCTPKNDEWSDRAKNLCIDCEENNE*
Ga0068504_11999272	3300006304	Marine	MSFLLKINLYHGLTVKVNRIIEDGMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQEDNE*
Ga0068469_11619241	3300006306	Marine	MSFQLKIKLYHSLTAKVNRIINDSMNERELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDS*
Ga0068469_15093142	3300006306	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCKNDD*
Ga0068470_13416352	3300006308	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRTKNLCIDCQDDS*
Ga0068470_13861001	3300006308	Marine	LTSIVNRIINDGMNNKEIAYNTALDTIFANKCHFCGCTPKNDEWADRAKNICIDCQDDS*
Ga0068470_18565382	3300006308	Marine	MSFQLKINLYHSLTAKVNRIINHSMNNKEITYNTALDIIFINKSHNCGCTPKNDEWSDRAKNLCIDCKNDS*
Ga0068471_11907602	3300006310	Marine	LLKTKLYHGLTVKVNRIIDDGMNEKELTYNTALDIVFINKCHNCGCTPKNDEWSNRAKNLCIDCQEDNE*
Ga0068471_15108043	3300006310	Marine	MSFQLKINLYHSLTAKVNRIINDSMNNKEITYNTALDIVFMNRCHNCGCTPKKDEWSDRAKNLCIDCQNDEE*
Ga0068471_16457652	3300006310	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDS*
Ga0068478_12802232	3300006311	Marine	MSFQLKINLYHGLTVKVNRIINDSMNEKELTYNTALDIVFMNRCHNCGCTPKNDEWSDRAKNLCIDCKNDD*
Ga0068501_11723112	3300006325	Marine	LTVKVNRIINDSMNNKEITYNTALDIVFMNRCHNCGCTPKNDEWSDRAKNLCIDCKNDD*
Ga0068501_12168861	3300006325	Marine	INLYHSLTAKVNRIINDSMNNKEITYNTALDIVFMNRCHNCGCTPKKDEWSDRAKNLCIDCQNDEE*
Ga0068501_12314312	3300006325	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQNDEE
Ga0068501_13542682	3300006325	Marine	MSFQLKINLYHGLTVKVNRIINDSMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSNRTKNLCIDCQDDD*
Ga0068501_13558382	3300006325	Marine	LTVKVNRIINDSMNERELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDD*
Ga0068501_15019691	3300006325	Marine	LTVKVNRIINDGMNNKEIPYNTALDIVFMNKCHNCGCTPKNDEWSDRTKNLCIDCKNDDC
Ga0068477_12155622	3300006326	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCKNDD*
Ga0068477_13290732	3300006326	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNRCHNCGCTPKNDEWSDRAKNLCIDCKNDD*
Ga0068502_12223072	3300006336	Marine	MSFQLKINLYHSLTAKVNRIINDSMNNKEITYNTALDIVFMNRCHNCGCTPKNDEWADRAKNLCIDCQNDEE*
Ga0068502_13553872	3300006336	Marine	LTSIVNRIINDGMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDD*
Ga0068502_13646073	3300006336	Marine	LTVKVNRIINDSMNNKEITYNTALDIVFMNRCHDCGCTPKNDEWADKAKNLCIDCQKDVE
Ga0068502_13682262	3300006336	Marine	LTSKVNRIINDGMNNKEIAYNTALDTIFANKCHFCGCTPKNDEWADRAKNLCIDCQDDS*
Ga0068502_13742231	3300006336	Marine	LTSIVNRIIKDSINNKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDD*
Ga0068502_14163362	3300006336	Marine	LTLKVNRIINDSMNERELTYNTALDIVFMNRCHDCGCTPKNDEWADRKNYLCIDCKNDDC
Ga0068502_14967482	3300006336	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNREKNLCIDCQDDDC
Ga0068482_13614353	3300006338	Marine	LTVKVNRIINDSMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDS*
Ga0068482_14842621	3300006338	Marine	MSFLLKINLYHGLTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKYDEWSNRAKNLCIDCQDDS*
Ga0068482_18114922	3300006338	Marine	LTVKVNRIIDDGMNEKELTYNTALDIVFMNRCHDCGCTPKNDEWSDRAKNLCIDCQDDD*
Ga0068503_103336992	3300006340	Marine	MSFLLKIKLYHGLTVKVNRIINDSMNEKELTYNTALDIVFINKCHNCGCTPKNDEWSNRAKNLCIDCQDDD*
Ga0068503_103905244	3300006340	Marine	MNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRTKNLCMDCKEDD*
Ga0068503_104284195	3300006340	Marine	LTVKVNRIINDSMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSNRTKNLCIDCQDDDC
Ga0068503_104502022	3300006340	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQEDE*
Ga0068503_104551822	3300006340	Marine	LTVKVNRIINDSMNDKEITYNTALDIVFMNRCHDCGCTPKNDEWSDRAKNLCIDCKDDD*
Ga0068503_104722344	3300006340	Marine	LTVKVNRIIDDGMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCRDCQDDS*
Ga0068503_104881622	3300006340	Marine	LLKINLYHGLTVKVNRIIDDGMNKKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCKNDD*
Ga0068503_105283921	3300006340	Marine	RIIYDDMNKKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRTKNLCIDCQDDD*
Ga0068503_105767082	3300006340	Marine	LTSIVNRIIDDGMNNKEIAYQNTLDVMFANRCHDCGCTPKNDEWSDRTKNLCIDCKDDS*
Ga0068503_105823001	3300006340	Marine	LTVKVNRIINDDMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDS*
Ga0068503_106184501	3300006340	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHDCGCTPKNDEWSNRAKNLC
Ga0068503_106261632	3300006340	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCRDDD*
Ga0068503_107108173	3300006340	Marine	LTAKVNRIINDSMNEKEITYNTALDIIFINKCHNCGCTPKNDEWSNRAKNLCIDCRNDD*
Ga0068503_111396342	3300006340	Marine	MNNKEITYNTALDIGFINKCHNCGCTPKNDEWSDRAKNLCIDCQDDD*
Ga0068493_104349171	3300006341	Marine	LTVKVNRIIDDGMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRTKNLCRDCQDDS*
Ga0068493_105079913	3300006341	Marine	MSFLLKINLYHGLTVKVNRIIDDGMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDS*
Ga0098033_12185721	3300006736	Marine	LTAKVNRIINDSMNNKEITYNTALDIVFMNRCHNCGCTPKKDEWSDRAKNLCIDCQDDD*
Ga0098040_10747512	3300006751	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDS*
Ga0098034_11061362	3300006927	Marine	MSFLLKIKLYHGLTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNREKNLCIDCQDDS*
Ga0181432_11742791	3300017775	Seawater	MSFQLKINLYHSLTAKVNRIINDSMNNKEITYNTALDIVFMNRCHDCGCTPKNDEWSNKAKNLCIDCEEEE
Ga0206685_101779922	3300021442	Seawater	VFSFIVKNKVINHLTSIVNRIINDGMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRTKNLCIDCQDDS
(restricted) Ga0255047_100322653	3300024520	Seawater	LTVKVNRIINDSMNERELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCKNDD
Ga0207889_10089102	3300025042	Marine	MSFLLKINLYHGLTVKVNRIIDDGMNEKELTYNTALDIVFINKCHNCGCTPKNDEWSNRAKNLCIDCQDDD
Ga0207889_10204841	3300025042	Marine	YHGLTVKVNRIINDSMNYKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDD
Ga0207889_10225582	3300025042	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQD
Ga0207898_10104055	3300025049	Marine	LTVKVNRIIDDGMNEKELTYNTALDIVFMNRCHDCGCTPKNDEWSDRTKNLCIDCKDDS
Ga0207898_10169813	3300025049	Marine	LTVKVNRIINDSMNNKEITYNTALDIVFMNRCHDCGCTPKNDEWSDRAKNLCIDCQNDEE
Ga0207898_10399712	3300025049	Marine	VNRIIDDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDD
Ga0207892_10306581	3300025050	Marine	MLVIKNKVLSWLDITVNRIIDDGMNEKELTYNTALDIVFMNRCHDCGCTPKNDEWSDRTKNLCIDCKDDS
Ga0207906_10117701	3300025052	Marine	YHGLTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDD
Ga0207887_10518452	3300025069	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNREKNLCIDCKDDD
Ga0207887_10883411	3300025069	Marine	LTVKVNRIIDDGMNYKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRA
Ga0209644_10021584	3300025125	Marine	LTVKVNRIIDDGMNNKEITYNTALDIVFMNRCHDCGCTPKNDEWADKAKNLCIDCQNDEE
Ga0209644_10119344	3300025125	Marine	MNNIPLTVKVNRIIDDGMNEKELTYNTALDIVFMNRCHNCGCTPKNDEWSNRAKNLCIDCQDDD
Ga0209644_10438561	3300025125	Marine	LTVIVNRIINDSMNDKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDS
Ga0209644_11098292	3300025125	Marine	MSFLLKINLYHGLTVKVNRIIDDGMNKKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDS
Ga0209644_11450391	3300025125	Marine	MSFLLKIKLYHGLTVKVNRIINDSMNEKELTYNTALDIVFMNKCHDCGCTPKNDEWSDRAKNLCIDCEENNE
Ga0208919_12431552	3300025128	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRTKNLCIDCKN
Ga0207894_10450581	3300025268	Deep Ocean	MFYLSVKLKIKLYHGLTLKVNRIIDDGMNNKEITYNTALDIVFMNRCHDCGCTPKNDEWSNRAKNLCIDCQDDD
Ga0209757_100094645	3300025873	Marine	MSFQLKINLYHGLTVKVNRIINDSMNEKELTYNTALNIVFMNKCHNCGCTPKNDEWSDRTKNLCIDCKDDS
Ga0209757_100452062	3300025873	Marine	LTAKVNRIINDSMNEKEITYNTALDIIFINKCHNCGCTPKNDEWSNRAKN
Ga0209757_101130171	3300025873	Marine	FISPLLKIKLYHGLTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRTKNLCIDCKNDEE
Ga0209757_101265981	3300025873	Marine	MSFLLKINLYHGLTVKVNRIIDDGMNEKELTYNTALDIVFINKCHNCGCTPKNDEWSNRTKNLCIDCQDDS
Ga0209757_101464093	3300025873	Marine	IYLLTAIVNRIINDSMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDD
Ga0209757_101665741	3300025873	Marine	LTAKVNRIINDSMNKKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQ
Ga0209757_101880651	3300025873	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRTKNLCIDCQDDS
Ga0209757_102040492	3300025873	Marine	KVLNPIDIEVNRIINDSMNNKEITYNTALDIVFMNKCHNCGRTPKNDEWSNRAKNLCIDCKNDD
Ga0208131_10425491	3300026213	Marine	MSFQLKINLYHGLTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDS
Ga0256380_10284281	3300028039	Seawater	GAVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCRNDDS
Ga0310345_107416662	3300032278	Seawater	LTSIVNRIINDGMNNKEIAYNTALDTIFANKCHFCGCTPKNDEWADRAKNLCIDCQDDS
Ga0310342_1007144711	3300032820	Seawater	LTVKVNRIINDSMNERELTYNTALDIVFMNKCHNCGCTPKNDEWSD
Ga0310342_1023921381	3300032820	Seawater	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCKNDD
Ga0326756_050748_2_190	3300034629	Filtered Seawater	TLLTVIVNRIIDDGMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQEDNE
Ga0326741_039914_2_193	3300034654	Filtered Seawater	LNPIDINVNRIINDSMNDKEITYNTALDIVFMNKCHNCGCTPKNDEWSNRTKNLCINCQEDNE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters