Metagenome / Metatranscriptome Family F092192

Basic Information
Family ID	F092192
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	47 residues
Representative Sequence	RPGWTAATLQTAIRDMGTTVGVNNKDVSLSVVAQTELKLDNS
Number of Associated Samples	98
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.93 %
% of genes near scaffold ends (potentially truncated)	97.20 %
% of genes from short scaffolds (< 2000 bps)	89.72 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Most Common Taxonomy
Group	Unclassified (49.533 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (19.626 % of family members)
Environment Ontology (ENVO)	Unclassified (66.355 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (74.766 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.71% β-sheet: 2.86% Coil/Unstructured: 81.43%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF05050	Methyltransf_21	22.43
PF00574	CLP_protease	2.80
PF00471	Ribosomal_L33	1.87
PF07963	N_methyl	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	5.61
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	5.61
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	2.80
COG0267	Ribosomal protein L33	Translation, ribosomal structure and biogenesis [J]	1.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.47 %
Unclassified	root	N/A	49.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.53 %
cellular organisms	root	All Organisms → cellular organisms	43.93 %
Viruses	superkingdom	All Organisms → Viruses	6.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.53 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.06 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.53 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.04 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	12.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.53 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	13.08 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	12.15 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.74 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	1.87 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.53 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	13.08 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	12.15 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	7.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	3.74 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.87 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.53 %
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	13.08 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	12.15 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	7.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Gammaproteobacteria bacterium TMED34	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED34	3.74 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples	1.87 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.53 %
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	13.08 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	12.15 %
Candidatus Endolissoclinum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum	7.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Gammaproteobacteria bacterium TMED34	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED34	3.74 %
uncultured delta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	1.87 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.53 %
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	13.08 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	12.15 %
unclassified Candidatus Endolissoclinum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum	7.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Gammaproteobacteria bacterium TMED34	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED34	3.74 %
uncultured delta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	1.87 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.53 %
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	13.08 %
Maribacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter	12.15 %
Candidatus Endolissoclinum sp. TMED37	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	7.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Gammaproteobacteria bacterium TMED34	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED34	3.74 %
uncultured delta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	1.87 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.53 %
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	13.08 %
unclassified Maribacter	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter	12.15 %
Candidatus Endolissoclinum sp. TMED37	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	7.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Gammaproteobacteria bacterium TMED34	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED34	3.74 %
uncultured delta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	1.87 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.53 %
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	13.08 %
Maribacter sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	12.15 %
Candidatus Endolissoclinum sp. TMED37	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	7.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.54 %
Gammaproteobacteria bacterium TMED34	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED34	3.74 %
uncultured delta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	1.87 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.87 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000116\|DelMOSpr2010_c10032919	All Organisms → cellular organisms → Bacteria → Proteobacteria	2405	Open in IMG/M
3300001353\|JGI20159J14440_10125163	Not Available	775	Open in IMG/M
3300001355\|JGI20158J14315_10016504	Not Available	3911	Open in IMG/M
3300001969\|GOS2233_1083356	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300002482\|JGI25127J35165_1119422	Not Available	522	Open in IMG/M
3300002835\|B570J40625_100739947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	874	Open in IMG/M
3300003475\|INDIC_1794993	Not Available	513	Open in IMG/M
3300005427\|Ga0066851_10038208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1675	Open in IMG/M
3300005428\|Ga0066863_10106085	Not Available	1022	Open in IMG/M
3300005432\|Ga0066845_10163923	Not Available	854	Open in IMG/M
3300005582\|Ga0049080_10215519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	632	Open in IMG/M
3300005593\|Ga0066837_10189059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	738	Open in IMG/M
3300005960\|Ga0066364_10249781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	619	Open in IMG/M
3300005969\|Ga0066369_10278794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	536	Open in IMG/M
3300006026\|Ga0075478_10166579	Not Available	683	Open in IMG/M
3300006029\|Ga0075466_1135003	Not Available	645	Open in IMG/M
3300006331\|Ga0068488_1510050	Not Available	599	Open in IMG/M
3300006750\|Ga0098058_1007999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	3192	Open in IMG/M
3300006789\|Ga0098054_1347314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	527	Open in IMG/M
3300006789\|Ga0098054_1349166	Not Available	525	Open in IMG/M
3300006900\|Ga0066376_10250830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1046	Open in IMG/M
3300009071\|Ga0115566_10168105	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1357	Open in IMG/M
3300009161\|Ga0114966_10609872	Not Available	608	Open in IMG/M
3300009481\|Ga0114932_10664966	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	607	Open in IMG/M
3300009481\|Ga0114932_10736682	Not Available	573	Open in IMG/M
3300009496\|Ga0115570_10340955	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	643	Open in IMG/M
3300009703\|Ga0114933_10124283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED34	1795	Open in IMG/M
3300009703\|Ga0114933_10958104	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	542	Open in IMG/M
3300009706\|Ga0115002_10483796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	902	Open in IMG/M
3300010151\|Ga0098061_1246152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	624	Open in IMG/M
3300010370\|Ga0129336_10695807	Not Available	538	Open in IMG/M
3300012919\|Ga0160422_10428431	Not Available	826	Open in IMG/M
3300012954\|Ga0163111_10139069	All Organisms → Viruses → Predicted Viral	2041	Open in IMG/M
(restricted) 3300013126\|Ga0172367_10193584	Not Available	1288	Open in IMG/M
(restricted) 3300014720\|Ga0172376_10141551	Not Available	1620	Open in IMG/M
3300017722\|Ga0181347_1043112	Not Available	1378	Open in IMG/M
3300017722\|Ga0181347_1116742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	749	Open in IMG/M
3300017726\|Ga0181381_1024953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED34	1353	Open in IMG/M
3300017727\|Ga0181401_1150549	Not Available	567	Open in IMG/M
3300017734\|Ga0187222_1029368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED34	1315	Open in IMG/M
3300017735\|Ga0181431_1150681	Not Available	516	Open in IMG/M
3300017744\|Ga0181397_1032808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED34	1485	Open in IMG/M
3300017753\|Ga0181407_1158266	Not Available	558	Open in IMG/M
3300017761\|Ga0181356_1186955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	621	Open in IMG/M
3300017761\|Ga0181356_1228106	Not Available	539	Open in IMG/M
3300017762\|Ga0181422_1003007	Not Available	5685	Open in IMG/M
3300017765\|Ga0181413_1070469	Not Available	1073	Open in IMG/M
3300017765\|Ga0181413_1238361	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	538	Open in IMG/M
3300017767\|Ga0181406_1157631	Not Available	680	Open in IMG/M
3300017771\|Ga0181425_1235850	Not Available	568	Open in IMG/M
3300017774\|Ga0181358_1142577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	825	Open in IMG/M
3300017785\|Ga0181355_1061615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	1583	Open in IMG/M
3300017786\|Ga0181424_10234908	Not Available	770	Open in IMG/M
3300017788\|Ga0169931_10121816	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	2426	Open in IMG/M
3300017986\|Ga0181569_10481658	Not Available	841	Open in IMG/M
3300018049\|Ga0181572_10481494	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	766	Open in IMG/M
3300018418\|Ga0181567_10592270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	717	Open in IMG/M
3300018420\|Ga0181563_10809966	Not Available	512	Open in IMG/M
3300018421\|Ga0181592_11006905	Not Available	537	Open in IMG/M
3300019283\|Ga0182058_1500386	Not Available	685	Open in IMG/M
3300020056\|Ga0181574_10193760	All Organisms → Viruses → Predicted Viral	1308	Open in IMG/M
3300020204\|Ga0194116_10444799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	626	Open in IMG/M
3300020246\|Ga0211707_1018095	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	997	Open in IMG/M
3300020281\|Ga0211483_10209060	Not Available	648	Open in IMG/M
3300020294\|Ga0211520_1078051	Not Available	520	Open in IMG/M
3300020356\|Ga0211612_1001754	All Organisms → cellular organisms → Bacteria	5131	Open in IMG/M
3300020374\|Ga0211477_10202155	Not Available	693	Open in IMG/M
3300020381\|Ga0211476_10168648	Not Available	784	Open in IMG/M
3300020388\|Ga0211678_10107886	All Organisms → Viruses → Predicted Viral	1227	Open in IMG/M
3300020394\|Ga0211497_10276212	Not Available	629	Open in IMG/M
3300020397\|Ga0211583_10022400	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	2668	Open in IMG/M
3300020400\|Ga0211636_10018396	Not Available	3228	Open in IMG/M
3300020402\|Ga0211499_10219350	Not Available	676	Open in IMG/M
3300020416\|Ga0211644_10457595	Not Available	527	Open in IMG/M
3300020428\|Ga0211521_10049855	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	2170	Open in IMG/M
3300020436\|Ga0211708_10130817	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	992	Open in IMG/M
3300020440\|Ga0211518_10139473	All Organisms → Viruses → Predicted Viral	1239	Open in IMG/M
3300020453\|Ga0211550_10410066	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	636	Open in IMG/M
3300020454\|Ga0211548_10129090	All Organisms → Viruses → Predicted Viral	1214	Open in IMG/M
3300020462\|Ga0211546_10272631	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	844	Open in IMG/M
3300020470\|Ga0211543_10467699	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	601	Open in IMG/M
3300020476\|Ga0211715_10263403	Not Available	842	Open in IMG/M
3300021424\|Ga0194117_10189645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	1022	Open in IMG/M
3300021963\|Ga0222712_10699185	Not Available	571	Open in IMG/M
3300021964\|Ga0222719_10816609	Not Available	511	Open in IMG/M
3300022227\|Ga0187827_10317286	Not Available	997	Open in IMG/M
3300023081\|Ga0255764_10246345	Not Available	851	Open in IMG/M
3300024344\|Ga0209992_10427310	Not Available	519	Open in IMG/M
3300025114\|Ga0208433_1071819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	889	Open in IMG/M
3300025151\|Ga0209645_1202526	Not Available	584	Open in IMG/M
3300025685\|Ga0209095_1056741	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1378	Open in IMG/M
3300025699\|Ga0209715_1210651	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	601	Open in IMG/M
3300025832\|Ga0209307_1112669	Not Available	858	Open in IMG/M
3300025873\|Ga0209757_10222451	Not Available	599	Open in IMG/M
3300026254\|Ga0208522_1112788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	721	Open in IMG/M
3300026268\|Ga0208641_1006590	All Organisms → cellular organisms → Bacteria → Proteobacteria	4692	Open in IMG/M
3300027499\|Ga0208788_1069575	Not Available	890	Open in IMG/M
3300028192\|Ga0257107_1127493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	750	Open in IMG/M
3300028192\|Ga0257107_1196135	Not Available	576	Open in IMG/M
3300029318\|Ga0185543_1073482	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	693	Open in IMG/M
3300032048\|Ga0315329_10453893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	683	Open in IMG/M
3300032277\|Ga0316202_10213411	Not Available	896	Open in IMG/M
3300032360\|Ga0315334_10181056	All Organisms → Viruses → Predicted Viral	1696	Open in IMG/M
3300032360\|Ga0315334_10258161	Not Available	1436	Open in IMG/M
3300034284\|Ga0335013_0455699	Not Available	775	Open in IMG/M
3300034695\|Ga0372840_043703	All Organisms → Viruses → Predicted Viral	1309	Open in IMG/M
3300034695\|Ga0372840_264666	Not Available	507	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.07%
Terrestrial	Environmental → Terrestrial	0.93%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	85.05%
Freshwater	Environmental → Aquatic → Freshwater	14.02%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.93%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	26.17%
Unclassified	Environmental → Aquatic → Marine → Unclassified	21.50%
Strait	Environmental → Aquatic → Marine → Strait	11.21%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	10.28%
Lentic	Environmental → Aquatic → Freshwater → Lentic	7.48%
Lake	Environmental → Aquatic → Freshwater → Lake	6.54%
Pelagic	Environmental → Aquatic → Marine → Pelagic	4.67%
Volcanic	Environmental → Aquatic → Marine → Volcanic	4.67%
Coastal	Environmental → Aquatic → Marine → Coastal	3.74%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.80%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	23.36%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	21.50%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	11.21%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	7.48%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	6.54%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	6.54%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.80%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	1.87%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.93%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	0.93%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.93%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	19.63%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	18.69%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	11.21%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	7.48%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	5.61%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	4.67%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	4.67%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.74%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	2.80%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	2.80%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.87%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.87%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.87%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.87%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.87%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.93%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.93%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.93%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	0.93%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.93%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	0.93%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	0.93%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.93%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.93%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300001353	Pelagic Microbial community sample from North Sea - COGITO 998_met_09	Environmental	Open in IMG/M
3300001355	Pelagic Microbial community sample from North Sea - COGITO 998_met_08	Environmental	Open in IMG/M
3300001969	Marine microbial communities from Yucatan Channel, Mexico - GS017	Environmental	Open in IMG/M
3300002482	Marine viral communities from the Pacific Ocean - ETNP_2_30	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003475	Marine microbial communities from the Indian Ocean - GS112	Environmental	Open in IMG/M
3300005427	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65	Environmental	Open in IMG/M
3300005428	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV253	Environmental	Open in IMG/M
3300005432	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300005593	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86	Environmental	Open in IMG/M
3300005960	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A	Environmental	Open in IMG/M
3300005969	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A	Environmental	Open in IMG/M
3300006026	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA	Environmental	Open in IMG/M
3300006029	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA	Environmental	Open in IMG/M
3300006331	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000m	Environmental	Open in IMG/M
3300006750	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006900	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A	Environmental	Open in IMG/M
3300009071	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405	Environmental	Open in IMG/M
3300009161	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG	Environmental	Open in IMG/M
3300009481	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG	Environmental	Open in IMG/M
3300009496	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524	Environmental	Open in IMG/M
3300009703	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG	Environmental	Open in IMG/M
3300009706	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86	Environmental	Open in IMG/M
3300010151	Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG	Environmental	Open in IMG/M
3300010370	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA	Environmental	Open in IMG/M
3300012919	Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG	Environmental	Open in IMG/M
3300012954	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG	Environmental	Open in IMG/M
3300013126 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m	Environmental	Open in IMG/M
3300014720 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35m	Environmental	Open in IMG/M
3300017722	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017726	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24	Environmental	Open in IMG/M
3300017727	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20	Environmental	Open in IMG/M
3300017734	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24 (version 2)	Environmental	Open in IMG/M
3300017735	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21	Environmental	Open in IMG/M
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental	Open in IMG/M
3300017753	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26	Environmental	Open in IMG/M
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017762	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18	Environmental	Open in IMG/M
3300017765	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28	Environmental	Open in IMG/M
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental	Open in IMG/M
3300017771	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13	Environmental	Open in IMG/M
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300017786	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18	Environmental	Open in IMG/M
3300017788	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L	Environmental	Open in IMG/M
3300017986	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018049	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018418	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018420	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019283	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101404CT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020056	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101410AT metaG (spades assembly)	Environmental	Open in IMG/M
3300020204	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015008 Mahale S9 surface	Environmental	Open in IMG/M
3300020246	Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX555934-ERR599105)	Environmental	Open in IMG/M
3300020281	Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116)	Environmental	Open in IMG/M
3300020294	Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556124-ERR599153)	Environmental	Open in IMG/M
3300020356	Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX555994-ERR599157)	Environmental	Open in IMG/M
3300020374	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)	Environmental	Open in IMG/M
3300020381	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291769-ERR318620)	Environmental	Open in IMG/M
3300020388	Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)	Environmental	Open in IMG/M
3300020394	Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)	Environmental	Open in IMG/M
3300020397	Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)	Environmental	Open in IMG/M
3300020400	Marine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)	Environmental	Open in IMG/M
3300020402	Marine microbial communities from Tara Oceans - TARA_B000000609 (ERX555971-ERR599057)	Environmental	Open in IMG/M
3300020416	Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)	Environmental	Open in IMG/M
3300020428	Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)	Environmental	Open in IMG/M
3300020436	Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)	Environmental	Open in IMG/M
3300020440	Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)	Environmental	Open in IMG/M
3300020453	Marine microbial communities from Tara Oceans - TARA_B100001758 (ERX556003-ERR598963)	Environmental	Open in IMG/M
3300020454	Marine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)	Environmental	Open in IMG/M
3300020462	Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)	Environmental	Open in IMG/M
3300020470	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)	Environmental	Open in IMG/M
3300020476	Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)	Environmental	Open in IMG/M
3300021424	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surface	Environmental	Open in IMG/M
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022227	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)	Environmental	Open in IMG/M
3300023081	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG	Environmental	Open in IMG/M
3300024344	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)	Environmental	Open in IMG/M
3300025114	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes)	Environmental	Open in IMG/M
3300025151	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)	Environmental	Open in IMG/M
3300025685	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404 (SPAdes)	Environmental	Open in IMG/M
3300025699	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 (SPAdes)	Environmental	Open in IMG/M
3300025832	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 (SPAdes)	Environmental	Open in IMG/M
3300025873	Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)	Environmental	Open in IMG/M
3300026254	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86 (SPAdes)	Environmental	Open in IMG/M
3300026268	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV253 (SPAdes)	Environmental	Open in IMG/M
3300027499	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)	Environmental	Open in IMG/M
3300028192	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m	Environmental	Open in IMG/M
3300029318	Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289	Environmental	Open in IMG/M
3300032048	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315	Environmental	Open in IMG/M
3300032277	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite	Environmental	Open in IMG/M
3300032360	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915	Environmental	Open in IMG/M
3300034284	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075	Environmental	Open in IMG/M
3300034695	Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_500m	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092192

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSpr2010_100329197	3300000116	Marine	TLQTAVRELGATVGVNNKDLRGSVVTETELKLDNS*
JGI20159J14440_101251634	3300001353	Pelagic Marine	QRIENAATGRIDIAMERAGWTASTLQTAIRDLGSTVGVNNKDLRGSVVTETELKLDNS*
JGI20158J14315_100165041	3300001355	Pelagic Marine	WTASTLQTAIRDLGSTVGVNNKDLRGSVVTETELKLDNS*
GOS2233_10833563	3300001969	Marine	DNAATGRIDITMERPGWTASTLQTAIRDMGDSVGVNNKSVSLSVVAETELKLDNS*
JGI25127J35165_11194221	3300002482	Marine	DNANSGRIDIAMERAGWTAATLQTAIRDLGATVGANDKDLRGTVVSETELKLDAS*
B570J40625_1007399471	3300002835	Freshwater	NAATGRIDVSMERSGWTAATLQAAIRAMGDTVGVNSKSVSLSVVSQTELKLDNS*
INDIC_17949931	3300003475	Marine	MSQWNDLGWTADSLETAIRAMGATVGVNNKDVRQSHVVETGLKLDNS*
Ga0066851_100382081	3300005427	Marine	ATGRLDICMERPGWTAATLQTAIRDMGTSVGTNTKDVSMSTVTETELKLDNS*
Ga0066863_101060853	3300005428	Marine	GWTAATLQTAIRDMGTTVGVNNKDVSLSVVAQTELKLDNS*
Ga0066845_101639233	3300005432	Marine	IDIAMERAGWTAATLQTAIRALGATVGVNDKDLRGTVVSETELKLDAS*
Ga0049080_102155192	3300005582	Freshwater Lentic	LQAAIRAMGDTVGVNSKSVSLSVVSQTELKLDNS*
Ga0066837_101890591	3300005593	Marine	DASSGRMDISMERPGWTAATLQTEIRAMGTTVGVNNIDISGSVVTLTELKLDNS*
Ga0066364_102497811	3300005960	Marine	QRIDNAATGRIDVSMERSGWTASTLETAIRALGDDVGVNDKSVSLSVVAQTELKLDNS*
Ga0066369_102787941	3300005969	Marine	RPGWTAATLQTAIRDMGTTVGVNNKDVSLSVVAQTELKLDNS*
Ga0075478_101665792	3300006026	Aqueous	RPGWTAATLQTAIRDMGDSVGINNKSVSLSVVVETELKLDNL*
Ga0075466_11350032	3300006029	Aqueous	MERAGWTASTLQTAIRDLGATVGVNNKDLRGSVVTETELKLDNS*
Ga0068488_15100501	3300006331	Marine	ERPGWTAATLQTAIRAMGTTVGVNNTDVSGTVVTLTELKLDAT*
Ga0098058_10079991	3300006750	Marine	PGWTAATLQTAIRDMGTTVGVNNKDVSLSVVAQTELKLDNS*
Ga0098054_13473141	3300006789	Marine	TLQTAIRAMGTTVGVNNIDVSGSVVALTELKLDNS*
Ga0098054_13491664	3300006789	Marine	ERAGWTAATLQTAIRDLGATVGANDKDLRGTVVSETELKLDAS*
Ga0066376_102508301	3300006900	Marine	WTAATLQTAIRDMGTTVGVNNKDVSLSVVAQTELKLDNS*
Ga0115566_101681051	3300009071	Pelagic Marine	TLQTAIRDLGSTVGVNNKDLRGSVVTETELKLDNS*
Ga0114966_106098722	3300009161	Freshwater Lake	GWTAATLQAAIRAMGDTVGVNSKSVSLSVVSLTELKLDNS*
Ga0114932_106649661	3300009481	Deep Subsurface	LQTAIRAMGDSVGVNDTSVSLSIVSETQLKLDNS*
Ga0114932_107366824	3300009481	Deep Subsurface	GRIDITMERSGWTADTLESAIRAMGTTVGVNNKDVSRSHVVKTELKLDAS*
Ga0115570_103409553	3300009496	Pelagic Marine	SGRVDITMERSGWTADTLETAIRDMGTTVGVNDKDVSLSHVVETELKLDAS*
Ga0114933_101242836	3300009703	Deep Subsurface	QRIDNANSGRIDIAMERAGWTAATLQTAIRDLGATVGVNDKDLRGTVVTETELKLDAS*
Ga0114933_109581041	3300009703	Deep Subsurface	ERPGWTAATLQTAIRDMGDSVGVNNKSVSLSVVAETELKLDNS*
Ga0115002_104837963	3300009706	Marine	SMERPGWTAATLQTEIRAMGTTVGVNNVDVSGSVVTLTELKLDNS*
Ga0098061_12461522	3300010151	Marine	WTAATLQTEIRAMGTTVGVNNIDISGSVVTLTELKLDNS*
Ga0129336_106958071	3300010370	Freshwater To Marine Saline Gradient	ERSGWTAATLQTAIRALGDTVGVNSKSVSLSVVSQTELKLDNS*
Ga0160422_104284311	3300012919	Seawater	MERSGWTADSLETAIRAMGATVGVNNKDVRQSHVVETGLKLDNS*
Ga0163111_101390691	3300012954	Surface Seawater	AASGRIDITMERSGWTADTLETAIREMGTTVGVNNKDVSRSHVVQTQLKLDAS*
(restricted) Ga0172367_101935841	3300013126	Freshwater	RIDITMERSGWTAATLQAAIRALGDTVGVNSRSVSLSVVSQTELKLDNS*
(restricted) Ga0172376_101415511	3300014720	Freshwater	AATGRIDITMERSGWTATTLQAAIRALGDTVGVNSRSVSLSVVSQTELKLDNS*
Ga0181347_10431124	3300017722	Freshwater Lake	SGWTAATLQTAIRAMGDTVGVNSKSVSLSVVSQTELKLDNS
Ga0181347_11167421	3300017722	Freshwater Lake	IDNAATGRIDVSMERSGWTAATLQTAIRAMGDTVGVNSKSVSLSVVSQTELKLDNS
Ga0181381_10249535	3300017726	Seawater	VHQKIDNASSGRIDIAMERAGWTAATLQTAIRDLGATVGVNDVDLRGTVVSETELKLDAS
Ga0181401_11505494	3300017727	Seawater	GWTADTLETAIRDMGTTVGVNNKDVSRSHVVKTELKLDAG
Ga0187222_10293681	3300017734	Seawater	VHQRIDNASSGRIDIAMERAGWTAATLQTAIRDLGATVGVNDVDLRGTVVSETELKLDAS
Ga0181431_11506811	3300017735	Seawater	ATGRIDIAMERAGWTAATLQTALRDLGDAVGVNDKDLRGTVVTETELKLDAS
Ga0181397_10328081	3300017744	Seawater	MGKNNASSGRIDIAMERAGWTAATLQTAIRDLGATVGVNNKDVSKSHVVQTELKLDAG
Ga0181407_11582661	3300017753	Seawater	IAMERAGWTASTLQTAIRDLGSTVGVNNKDLRGSVVTETELKLDNS
Ga0181356_11869552	3300017761	Freshwater Lake	MERSGWTAATLQAAIRAMGDTVGVNSKSVSLSVVSQTELKLDNS
Ga0181356_12281061	3300017761	Freshwater Lake	TGRIDVSMERSGWTAATLQAAIRSMGDTVGVNSKSVSLSVVSQTELKLDNS
Ga0181422_10030071	3300017762	Seawater	AASGRLDITMERSGWTADTLETAIREMGTTVGVNNKDVSRSHVVQTQLKLDAS
Ga0181413_10704691	3300017765	Seawater	IAMERAGWTAATLQTALRDLGDTVGVNDKDLRGTVVTETELKLDAS
Ga0181413_12383611	3300017765	Seawater	DVTMERPGWTAATLQSAIRDMGNSVGVNEKSVSLSVVAETELKLDNS
Ga0181406_11576313	3300017767	Seawater	AATGRIDIAMERAGWTAATLQTALRDLGDAVGVNDKDLRGTVVTETELKLDAS
Ga0181425_12358501	3300017771	Seawater	MERAGWPAATLQTALRELGDTVGVNDKDLRGTVVTETELKLDAS
Ga0181358_11425771	3300017774	Freshwater Lake	IDNAATGRIDVSMERSGWTAATLQAAIRAMGDTVGVNSKSVSLSVVSQTELKLDNS
Ga0181355_10616154	3300017785	Freshwater Lake	SGWTAATLQTAIRAMGGTVGVNSKSVSLSVVSQTELKLDNS
Ga0181424_102349085	3300017786	Seawater	SGRIDITMERSGWTADTLETAIRDMGTTVGVNNKDVSRSHVVKTELKLDAG
Ga0169931_101218165	3300017788	Freshwater	IDITMERSGWTAATLQAAIRALGDTVGVNSRSVSLSVVSQTELKLDNS
Ga0181569_104816581	3300017986	Salt Marsh	EDAATGRMDIAMERAGWTASTLQTAIRDLGATVGVNDVDLRGTVVTETELKLDNS
Ga0181572_104814943	3300018049	Salt Marsh	TTLQTAIRDLGTTVGVNNKDVSQSTVTETELKLDNS
Ga0181567_105922702	3300018418	Salt Marsh	LYQRIDNAATGRIDVTMERSGWTAASLQQSIRALGDSVGENNKSVSLSLVSQTELKLDNS
Ga0181563_108099662	3300018420	Salt Marsh	IDNAATGRIDITMERSGWTAATLQSAIREMGDSVGVNSTSVSLSIVAETELKLDNS
Ga0181592_110069051	3300018421	Salt Marsh	MERAGWTASTLQTAIRDLGATVGVNDVDLRGTVVSETELKLDNS
Ga0182058_15003863	3300019283	Salt Marsh	IDITMERSGWTASTLQSAIRAMGDSVGVNDTSVSLSVVAETELKLDNS
Ga0181574_101937601	3300020056	Salt Marsh	DNAATGRIDVTMERSGWTAASLQQSIRALGDSVGENNKSVSLSLVSQTELKLDNS
Ga0194116_104447992	3300020204	Freshwater Lake	SGWTAATLQVAIRALGDTVGVNSRSVSLSVVSQTELKLDNS
Ga0211707_10180951	3300020246	Marine	IDITMERSGWTADTLQTAIRSLGDDVGVNDKSVSLSVVTKTELKLDNS
Ga0211483_102090603	3300020281	Marine	TAATLQTAIRDMGDSVGVNNKSVSLSVVAETELKLDNS
Ga0211520_10780511	3300020294	Marine	WTASTLQTAIRDLGATVGVNNKDLRGSVVTETELKLDNS
Ga0211612_100175411	3300020356	Marine	GRVDITMERPGWTAATLQTAIRDMGDSVGVNNKSVSLSVVAETELKLDNS
Ga0211477_102021552	3300020374	Marine	IEDAATGRFDICMERSGWTASTLQTAIRDLGTTVGVNNKDVSQSTVSETELKLDNS
Ga0211476_101686485	3300020381	Marine	TLQTAIRDLGATVGVNNKDLRGTIVSETELKLDDS
Ga0211678_101078861	3300020388	Marine	GWTAATLQTALRDLGATVGVNDKDLRGTVVTETELKLDAS
Ga0211497_102762124	3300020394	Marine	GRIDIAMERAGWTAATLQTAIRDLGATVGVNDKDLRGTVVTETELKLDAS
Ga0211583_100224001	3300020397	Marine	LYQRIDNAATGRIDITMERPGWTASTLQTAIRDMGDSVGVNNKSVSLSVVAETELKLDNS
Ga0211636_100183961	3300020400	Marine	RVDITMERPGWTAATLQTAIRDMGDSVGVNNKSVSLSVVAETELKLDNS
Ga0211499_102193503	3300020402	Marine	SGRIDIAMERAGWTAATLQTAIRDLGATVGVNDKDLRGTVVSETELKLDAS
Ga0211644_104575951	3300020416	Marine	IVHQRIDNANSGRIDIAMERAGWTAATLQTAIRDLGATVGVNDVDLRGTVVTETELKLDA
Ga0211521_100498555	3300020428	Marine	IDNAATGRIDVTMERPGWTAATLQSAIRDMGNSVGVNEKSVSLSVVAETELKLDNS
Ga0211708_101308173	3300020436	Marine	VTMERPGWTAATLQTAIRNMGDSVGVNNKSVSLSVVAETELKLDNS
Ga0211518_101394736	3300020440	Marine	TADTLETAIRDMGTTVGVNDKDVSKSHVVQTELKLDAG
Ga0211550_104100661	3300020453	Marine	AATLQTAIRDMGNSVGVNNKSVSLSVVAETELKLDNS
Ga0211548_101290901	3300020454	Marine	IDITMERSGWTADTLETAIRDMGTTVGVNDKDVSKSHVVQTELKLDAG
Ga0211546_102726311	3300020462	Marine	TMERPGWTAATLQSAIRDMGNSVGVNEKSVSLSVVAETELKLDNS
Ga0211543_104676992	3300020470	Marine	IDNAASGRIDITMERPGWTAATLQTAIRDMGNSVGVNNKSVSLSVVAETELKLDNS
Ga0211715_102634031	3300020476	Marine	DVCMERSGWTAATLQTAIRAMGTTVGVNNKDVSTSTVTQTELKLDNS
Ga0194117_101896453	3300021424	Freshwater Lake	QRIDNAATGRIDITMERSGWTAATLQVAIRALGDTVGVNSRSVSLSVVSQTELKLDNS
Ga0222712_106991852	3300021963	Estuarine Water	AATLQAAIRALGDTVGVNSRSVSLSVVSQTELKLDNS
Ga0222719_108166092	3300021964	Estuarine Water	IEDAATGRIDITMERSGWTADTLETAIRAMGDTVGVNNKSVSLSVVSETGLKLDNS
Ga0187827_103172861	3300022227	Seawater	PGGTAATLQTAIRDMGTTVGVNNKDVSLSVVAQTELKLDNS
Ga0255764_102463453	3300023081	Salt Marsh	FQRIDNAATGRIDITMERSGWTAATLQSAIREMGDSVGVNSTSVSLSIVAETELKLDNS
Ga0209992_104273104	3300024344	Deep Subsurface	ADTLETAIRDMGTTVGVNDKDVSKSHVVQTELKLDAG
Ga0208433_10718193	3300025114	Marine	PGWTAATLQTAIRDMGTTVGVNNKDVSLSVVAQTELKLDNS
Ga0209645_12025263	3300025151	Marine	NAASGRVDITMERPGWTAATLQTAIRDMGDTVGVNNKSVSLSVVAETELKLDNS
Ga0209095_10567413	3300025685	Pelagic Marine	NASTGRIDIAMERAGWTASTLQTAIRDLGSTVGVNNKDLRGSVVTETELKLDNS
Ga0209715_12106514	3300025699	Pelagic Marine	GRVDITMERSGWTADTLETAIRDMGTTVGVNDKDVSLSHVVETELKLDAS
Ga0209307_11126695	3300025832	Pelagic Marine	RAGWTASTLQTAIRDLGSTVGVNNKDLRGSVVTETELKLDNS
Ga0209757_102224512	3300025873	Marine	GWTAATLQTAIRAMGTTVGVNNIDVSGSVVTLTELKLDNS
Ga0208522_11127882	3300026254	Marine	DASSGRMDISMERPGWTAATLQTEIRAMGTTVGVNNIDISGSVVTLTELKLDNS
Ga0208641_100659011	3300026268	Marine	SGRIDISMERPGWTAATLQTAIRDMGTTVGVNNKDVSLSVVAQTELKLDNS
Ga0208788_10695751	3300027499	Deep Subsurface	RSGWTAATLQAAIRALGDTVGVNSRLVSLSVVSQTELKLDNS
Ga0257107_11274931	3300028192	Marine	SMERPGWTAATLQTEIRAMGTTVGVNNIDISGSVVTLTELKLDNS
Ga0257107_11961352	3300028192	Marine	PGWTAATLQTEIRAMGTTVGVNNIDISGSVVTLTELKLDSS
Ga0185543_10734822	3300029318	Marine	SGRIDITMERSGWTADTLQTAIRNLGDNVGVNDQSVSLSVVSKTELKLDNS
Ga0315329_104538932	3300032048	Seawater	RIDDASSGRMDISMERPGWTAATLQTAIRDMGTTVGVNNVDVSGSVVTLTELKLDNS
Ga0316202_102134115	3300032277	Microbial Mat	IAMERAGWTASTLQTAVRELGATVGVNNKDLRGSVVTETELKLDNS
Ga0315334_101810564	3300032360	Seawater	SMERPGWTAATLQTAIRAMGTTVGVNNIDISGSVVTLTELKLDNS
Ga0315334_102581611	3300032360	Seawater	RPGWTAATLQTAIRAMGTTVGVNNVDVSGSVVALTELKLDNS
Ga0335013_0455699_615_773	3300034284	Freshwater	ATGRIDVSMERSGWTAATLQAAIRAMGDTVGVNSKSVSLSVVSQTELKLDNS
Ga0372840_043703_1168_1302	3300034695	Seawater	MERPGWTAATLQTEIRAMGTTVGVNNIDISGSVVTLTELKLDNS
Ga0372840_264666_2_130	3300034695	Seawater	RPGWTAATLQTEIRAMGTTVGVNNIDISGSVVTLTELKLDNS

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign