Metagenome Family F092180

Overview

Basic Information

• Family ID: F092180
• Family Type: Metagenome
• Number of Sequences: 107
• Average Sequence Length: 63 residues
• Representative Sequence: MKRIFTHTAVDSDGWVVRKFLSLREARHFCERNGLKVVATGEKAQTQRDLYKQALLECGKALF
• Number of Associated Samples: 64
• Number of Associated Scaffolds: 107

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 81.31 %
• % of genes near scaffold ends (potentially truncated): 22.43 %
• % of genes from short scaffolds (< 2000 bps): 77.57 %
• Associated GOLD sequencing projects: 60
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (72.897 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater (16.822 % of family members)
• Environment Ontology (ENVO): Unclassified (67.290 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (87.850 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 25.27%
  β-sheet: 14.29%
  Coil/Unstructured: 60.44%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF07120	DUF1376	2.80
PF04404	ERF	1.87
PF00959	Phage_lysozyme	0.93
PF13392	HNH_3	0.93
PF09588	YqaJ	0.93
PF14297	DUF4373	0.93
PF01844	HNH	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3756	Uncharacterized conserved protein YdaU, DUF1376 family	Function unknown [S]	2.80

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
All Organisms	root	All Organisms	27.10 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
Viruses	superkingdom	All Organisms → Viruses	26.17 %
cellular organisms	root	All Organisms → cellular organisms	0.93 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.36 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	2.80 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.36 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	2.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.36 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	2.80 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.36 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.80 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.36 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	1.87 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.36 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.87 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000117|DelMOWin2010_c10032648	All Organisms → Viruses → Predicted Viral	2511
3300000117|DelMOWin2010_c10056270	Not Available	1688
3300000117|DelMOWin2010_c10137707	Not Available	825
3300000117|DelMOWin2010_c10174417	Not Available	685
3300000117|DelMOWin2010_c10222182	Not Available	568
3300000928|OpTDRAFT_10097100	All Organisms → Viruses → Predicted Viral	2881
3300001348|JGI20154J14316_10157769	Not Available	604
3300001352|JGI20157J14317_10223264	Not Available	523
3300004097|Ga0055584_100209274	Not Available	1982
3300004279|Ga0066605_10039333	All Organisms → Viruses → Predicted Viral	2202
3300004279|Ga0066605_10093588	Not Available	1261
3300004279|Ga0066605_10096358	All Organisms → Viruses → Predicted Viral	1236
3300005510|Ga0066825_10046306	Not Available	1542
3300005510|Ga0066825_10137230	Not Available	897
3300005837|Ga0078893_11919291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7967
3300005837|Ga0078893_12860052	All Organisms → Viruses → Predicted Viral	1348
3300005837|Ga0078893_13215015	Not Available	647
3300005837|Ga0078893_14563276	All Organisms → Viruses → Predicted Viral	1335
3300006352|Ga0075448_10003580	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5152
3300006622|Ga0101442_119620	All Organisms → Viruses → Predicted Viral	3223
3300006622|Ga0101442_134138	Not Available	2799
3300006947|Ga0075444_10025894	All Organisms → Viruses → Predicted Viral	2975
3300007655|Ga0102825_1055534	Not Available	806
3300009074|Ga0115549_1037611	Not Available	1789
3300009436|Ga0115008_10084523	All Organisms → Viruses → Predicted Viral	2381
3300009436|Ga0115008_10318786	All Organisms → Viruses → Predicted Viral	1103
3300009436|Ga0115008_10522282	Not Available	849
3300009436|Ga0115008_10949612	Not Available	639
3300009442|Ga0115563_1115499	All Organisms → Viruses → Predicted Viral	1123
3300009442|Ga0115563_1275147	Not Available	620
3300009495|Ga0115571_1376851	Not Available	556
3300009505|Ga0115564_10526830	Not Available	566
3300009505|Ga0115564_10531014	Not Available	563
3300009512|Ga0115003_10043997	Not Available	2854
3300009512|Ga0115003_10395172	Not Available	813
3300010883|Ga0133547_10785950	All Organisms → Viruses → Predicted Viral	1872
3300017772|Ga0181430_1232794	Not Available	521
3300020165|Ga0206125_10050801	All Organisms → Viruses → Predicted Viral	2015
3300020165|Ga0206125_10055888	Not Available	1879
3300020165|Ga0206125_10069024	All Organisms → Viruses → Predicted Viral	1610
3300020165|Ga0206125_10122076	All Organisms → Viruses → Predicted Viral	1075
3300020165|Ga0206125_10142397	Not Available	971
3300020165|Ga0206125_10257331	Not Available	663
3300020166|Ga0206128_1338524	Not Available	523
3300020169|Ga0206127_1059359	All Organisms → Viruses → Predicted Viral	1858
3300020169|Ga0206127_1143241	Not Available	935
3300020169|Ga0206127_1188430	Not Available	759
3300020175|Ga0206124_10146781	Not Available	953
3300020185|Ga0206131_10065462	Not Available	2300
3300020185|Ga0206131_10437406	Not Available	534
3300020187|Ga0206130_10099909	Not Available	1709
3300020317|Ga0211688_1091900	Not Available	570
3300020385|Ga0211677_10109895	Not Available	1198
3300020595|Ga0206126_10285399	Not Available	747
3300021085|Ga0206677_10150223	Not Available	1042
3300021085|Ga0206677_10172699	Not Available	947
3300021085|Ga0206677_10193496	Not Available	876
3300021085|Ga0206677_10231704	Not Available	773
3300021085|Ga0206677_10307834	Not Available	631
3300021085|Ga0206677_10400909	Not Available	519
3300021185|Ga0206682_10001317	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	24650
3300021185|Ga0206682_10013163	Not Available	5666
3300021365|Ga0206123_10141089	Not Available	1110
3300021365|Ga0206123_10339880	Not Available	630
3300021365|Ga0206123_10401981	Not Available	563
3300021373|Ga0213865_10104196	All Organisms → Viruses → Predicted Viral	1508
3300021373|Ga0213865_10370628	Not Available	645
3300021957|Ga0222717_10007029	Not Available	8023
3300021957|Ga0222717_10367478	Not Available	804
(restricted) 3300022920|Ga0233426_10036202	All Organisms → Viruses → Predicted Viral	2477
(restricted) 3300022920|Ga0233426_10114886	All Organisms → Viruses → Predicted Viral	1174
(restricted) 3300022920|Ga0233426_10146035	Not Available	1006
(restricted) 3300022920|Ga0233426_10308914	Not Available	611
(restricted) 3300023109|Ga0233432_10084294	Not Available	1843
3300024228|Ga0228633_1050628	All Organisms → Viruses → Predicted Viral	1048
3300024230|Ga0228638_1057633	All Organisms → Viruses → Predicted Viral	1028
3300024247|Ga0228675_1019338	All Organisms → Viruses → Predicted Viral	1658
3300024248|Ga0228676_1000796	Not Available	7658
3300024248|Ga0228676_1141984	Not Available	508
(restricted) 3300024255|Ga0233438_10011927	Not Available	6001
(restricted) 3300024255|Ga0233438_10145418	Not Available	1023
(restricted) 3300024264|Ga0233444_10105427	Not Available	1463
3300024296|Ga0228629_1129599	Not Available	664
3300024326|Ga0228652_1093548	Not Available	702
3300024334|Ga0228671_1073203	Not Available	860
3300024346|Ga0244775_11242374	Not Available	579
3300024359|Ga0228628_1075047	Not Available	677
3300025705|Ga0209374_1107759	Not Available	840
3300026201|Ga0208127_1017436	All Organisms → Viruses → Predicted Viral	2583
3300026201|Ga0208127_1080620	Not Available	874
3300026517|Ga0228607_1119236	Not Available	651
3300027406|Ga0208965_1091407	Not Available	612
3300027413|Ga0208950_1078143	Not Available	736
3300027686|Ga0209071_1004063	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5159
3300027780|Ga0209502_10250077	Not Available	788
3300027791|Ga0209830_10030375	All Organisms → Viruses → Predicted Viral	3030
3300027833|Ga0209092_10073507	All Organisms → Viruses → Predicted Viral	2066
3300028131|Ga0228642_1140421	Not Available	582
3300028133|Ga0228609_1176266	Not Available	513
3300028273|Ga0228640_1077015	Not Available	650
3300028284|Ga0257120_1042767	Not Available	1221
3300028419|Ga0228625_1047506	Not Available	961
3300031519|Ga0307488_10498502	Not Available	728
3300031519|Ga0307488_10544977	Not Available	684
3300031629|Ga0307985_10001991	Not Available	11545
3300031774|Ga0315331_10014635	Not Available	5812
3300031774|Ga0315331_10702869	Not Available	714

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Type

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	22.43%
Pelagic	Environmental → Aquatic → Marine → Pelagic	22.43%
Oceanic	Environmental → Aquatic → Marine → Oceanic	13.08%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	12.15%
Unclassified	Environmental → Aquatic → Marine → Unclassified	12.15%
Inlet	Environmental → Aquatic → Marine → Inlet	8.41%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	8.41%
Strait	Environmental → Aquatic → Marine → Strait	0.93%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	22.43%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	22.43%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	13.08%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	12.15%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	11.21%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	8.41%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	8.41%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.93%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	16.82%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	14.95%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	13.08%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	9.35%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	8.41%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	7.48%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	5.61%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	5.61%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	4.67%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	2.80%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	1.87%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	1.87%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.87%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.93%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.93%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.93%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.93%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	0.93%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	0.93%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental
3300000928	Marine plume microbial communities from the Columbia River - 25 PSU	Environmental
3300001348	Pelagic Microbial community sample from North Sea - COGITO 998_met_04	Environmental
3300001352	Pelagic Microbial community sample from North Sea - COGITO 998_met_07	Environmental
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental
3300004279	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m	Environmental
3300005510	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45	Environmental
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental
3300006352	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA	Environmental
3300006622	Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ08 time point	Environmental
3300006947	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA	Environmental
3300007655	Estuarine microbial communities from the Columbia River estuary - High salinity metaG S.579	Environmental
3300009074	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430	Environmental
3300009436	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome	Environmental
3300009442	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519	Environmental
3300009495	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531	Environmental
3300009505	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523	Environmental
3300009512	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88	Environmental
3300010883	western Arctic Ocean co-assembly	Environmental
3300017772	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10	Environmental
3300020165	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1	Environmental
3300020166	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1	Environmental
3300020169	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1	Environmental
3300020175	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2	Environmental
3300020185	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1	Environmental
3300020187	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1	Environmental
3300020317	Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027)	Environmental
3300020385	Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)	Environmental
3300020595	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1	Environmental
3300021085	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015	Environmental
3300021185	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015	Environmental
3300021365	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1	Environmental
3300021373	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282	Environmental
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental
3300022920 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MG	Environmental
3300023109 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG	Environmental
3300024228	Seawater microbial communities from Monterey Bay, California, United States - 41D	Environmental
3300024230	Seawater microbial communities from Monterey Bay, California, United States - 48D	Environmental
3300024247	Seawater microbial communities from Monterey Bay, California, United States - 36D_r	Environmental
3300024248	Seawater microbial communities from Monterey Bay, California, United States - 48D_r	Environmental
3300024255 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG	Environmental
3300024264 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG	Environmental
3300024296	Seawater microbial communities from Monterey Bay, California, United States - 36D	Environmental
3300024326	Seawater microbial communities from Monterey Bay, California, United States - 64D	Environmental
3300024334	Seawater microbial communities from Monterey Bay, California, United States - 89D	Environmental
3300024346	Whole water sample coassembly	Environmental
3300024359	Seawater microbial communities from Monterey Bay, California, United States - 34D	Environmental
3300025705	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m (SPAdes)	Environmental
3300026201	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45 (SPAdes)	Environmental
3300026517	Seawater microbial communities from Monterey Bay, California, United States - 8D	Environmental
3300027406	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10 (SPAdes)	Environmental
3300027413	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_54_BLW_10 (SPAdes)	Environmental
3300027686	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA (SPAdes)	Environmental
3300027780	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)	Environmental
3300027791	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)	Environmental
3300027833	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)	Environmental
3300028131	Seawater microbial communities from Monterey Bay, California, United States - 53D	Environmental
3300028133	Seawater microbial communities from Monterey Bay, California, United States - 10D	Environmental
3300028273	Seawater microbial communities from Monterey Bay, California, United States - 51D	Environmental
3300028284	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10	Environmental
3300028419	Seawater microbial communities from Monterey Bay, California, United States - 30D	Environmental
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental
3300031629	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80	Environmental
3300031774	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOWin2010_100326481	3300000117	Marine	VDEDGWVVRKFLSLREARHFAQRNGLKVVATGQKQRTQRDLYKQALLECGEALI*
DelMOWin2010_100562702	3300000117	Marine	MDRIFTHCAIDDDGYVVRKFLSLREARHFCERNSLQLKATGNKPKTQRDLYKTALIECGTCLF*
DelMOWin2010_101377071	3300000117	Marine	DFFMKRIFTHTAVDSDGWVVRKFLSLREARHFCERNGLKVVATGEKAQTQRDLYKQALLECGEAIF*
DelMOWin2010_101744173	3300000117	Marine	MDRVWTHTAVDEDGWVVRKFLSLREARHFAQRNNLSVVATGQKQRTQRDLYKQALLECGESLI*
DelMOWin2010_102221821	3300000117	Marine	NVMDRVWTHTAVDEDGWVVRKFLSLREARQFAQRNNLSVVATGQKQRTQRDLYKQALLECGEALI*
OpTDRAFT_100971006	3300000928	Freshwater And Marine	MDRYWTHVAMDGDWEVRKFLSLRECRHFCERNNLTVKATGVKVQTQRDIYKKALLDCGECLF*
JGI20154J14316_101577692	3300001348	Pelagic Marine	MNRIWTHIVVDEDNYEIRKFLSLREARHFAERNNLTVVATGEKAVTQRDLYKQALLECGEALF*
JGI20157J14317_102232642	3300001352	Pelagic Marine	MQRIWTHICVDSDDYTIRKFLSLREARDFAKRNDLKVVATGEKAQTQRDLYKTALLECGECLF*
Ga0055584_1002092745	3300004097	Pelagic Marine	MNRIFTHICVDSDNYTIRKFLSLREARHFAERNNLTVVATGDKPVTQRDLYKQALLSCGKALF*
Ga0066605_100393335	3300004279	Marine	MDRYWTHVAMDGDWEVRKFLSLRECRDYCQRNNLTVKATGVKVQTQRDIYKKALLDCGECLF*
Ga0066605_100935884	3300004279	Marine	MNRIFTHSAVDADGWTVRKFLSLREARHFAERNGLEVVATGEKQQTQRDLYKQSLLECGFAPF*
Ga0066605_100963581	3300004279	Marine	MERLWTHVAMDGDWEVRKFLSLREARHFAERNNLTVKATDIKPQTQRDLYKKSLLECGKCLL*
Ga0066825_100463062	3300005510	Marine	MDRVWTHIVVDSDGWEVRKFLSLREARHFAERNDLKVVATGQKQRTQRDLYKQALLECGEALI*
Ga0066825_101372301	3300005510	Marine	MDRVWLYVAMDGDWEVRKFLSLREARHFAERNDLKVVATGNKPRTQRDLYKQALLRCGEALL*
Ga0078893_119192916	3300005837	Marine Surface Water	MQRIWTHICVDSDDYTIRKFLSLREARHFAERNGLKVVATGQKQRTQRDLYKQALLECGEALI*
Ga0078893_128600525	3300005837	Marine Surface Water	MNRIFTHLAVDSDGWTVRKFLSLREARHFCERNDLKVVATGEKAQTQRDLYKTAMLECGECLF*
Ga0078893_132150153	3300005837	Marine Surface Water	MRRVFTHTAVDSDGWAVRKFLSHREAKHFAERNSLTVVPTGQKATTQRDLYKQALLQCGKALF*
Ga0078893_145632764	3300005837	Marine Surface Water	MQRIWTHICVDSDDYTIRKFLSLREARHFAERNGLKVVATGAKKQTQRDLYKQALLQCGEAIF*
Ga0075448_100035805	3300006352	Marine	MNRIFTHICVDSDNYTVRKFLSLREARFFAQRNDLTVVATGDKPITQRDLYKQSVLECGKALF*
Ga0101442_1196209	3300006622	Marine Surface Water	MDRYWTHVAMDGDWEVRKFLSLRECRDFCERNNLTVKATGVKVQTQRDIYKKALLDCGECLF*
Ga0101442_1341381	3300006622	Marine Surface Water	MNRIFTHLAVDADGWTIRKFLSLREARHFAERNGLKVVATGEKQQTQRDLYKQSLLECGFAPF*
Ga0075444_100258949	3300006947	Marine	NMKRIFTHLAVDADGWTIRKFLSLREARHFAERNGLKVVATGEKQQTPRDLYKQSFLACGYAPF*
Ga0102825_10555343	3300007655	Estuarine	MNRQWLYVAMDGDWAVRKFLSLREARHYCERNNLTVKSTGVKPQTQRDIYKKALLQCGEALF*
Ga0115549_10376113	3300009074	Pelagic Marine	MNRIFTHLAVDSDGWTVRKFLSLREARHFCERNDLKVVATGEKIQTQRDLYKTAMLECGECLF*
Ga0115008_100845237	3300009436	Marine	MNRIFTHLAVDSDGWTIRKFLSLREARHFCERNDLKVVATGEKAQTQRDLYKTAMLECGEALF*
Ga0115008_103187863	3300009436	Marine	WTHVVMDGDWEVRKFLSLREARHFAERNNLTVKATGVKPQTQRDLYKKALLECGECLF*
Ga0115008_105222821	3300009436	Marine	MNRIFTHSAVDSDGWTVRKFLSLREARHFCERNDLKVVATGEKAQTQRDLYKTAMLECGECLF*
Ga0115008_109496121	3300009436	Marine	MKRIFTHTAVDSDGWVVRKFLSLREARHFCERNGLTVVATGAKKQTQRDLYKQALLECGE
Ga0115563_11154993	3300009442	Pelagic Marine	MDRYWTHVAMDGDWEVRKFLSLRECRDYCERNNLTVKATGVKVQTQRDIYKKALLDCGECLF*
Ga0115563_12751472	3300009442	Pelagic Marine	MNRIFTHICVDSDDYTIRKFLSLREARDFAKRNDLKVVATGEKAQTQRDLYKTALLECGECLF*
Ga0115571_13768513	3300009495	Pelagic Marine	MNRQWLYVAMDGDWAVRKFLSLREARDYCERNNLTVKSTGVKPQTQRDIYKSALLQCGEALF*
Ga0115564_105268302	3300009505	Pelagic Marine	MNRIFTHLAVDADGWTVRKFLSLREARHFAERNGLEVVATGEKKQTQRDLYKQSLLSCGYAPF*
Ga0115564_105310143	3300009505	Pelagic Marine	MKRIFTHTAVDSDGWVVRKFLSLREARHFCERNGLKVVATGEKAQTQRDLYKQALLECGEAIF*
Ga0115003_100439973	3300009512	Marine	MNRIFTHSAVDADGWAIRKFLSLREARYFAERNGLKVVATGDKQQTQRDLYKQSFLDCGLAVF*
Ga0115003_103951721	3300009512	Marine	IIKMNRIFTHKAVDSDGWVVRMFLSLREARHFCERNGLEVVATGEKAQTQRDLYKQALLESGEAIF*
Ga0133547_107859502	3300010883	Marine	MNRIFTHKAVDSDGWVVRKFLSLREARHFCERNGLEVVATGEKAQTQRDLYKQALLESGEAIF*
Ga0181430_12327941	3300017772	Seawater	IWTHTAVDEDGWVVRKFLSLREARHFAQRNNLSVVATGQKQRTQRDLYKQALLECGEALI
Ga0206125_100508012	3300020165	Seawater	MDRVWTHTAVDEDGWVVRKFLSLREARHFAQRNNLSVVATGQKQRTQRDLYKQALLECGEALI
Ga0206125_100558884	3300020165	Seawater	MNRIFTHLAVDADGWTVRKFLSLREARHFAERNGLEVVATGEKKQTQRDLYKQSLLACGYAPF
Ga0206125_100690243	3300020165	Seawater	MQRIWTHICVDSDDYTIRKFLSLREARDFAKRNDLKVVATGEKAQTQRDLYKTALLECGECLF
Ga0206125_101220763	3300020165	Seawater	MDRYWTHVAMDGDWEVRKFLSLRECRDYCQRNNLTVKATGVKVQTQRDIYKKALLDCGECLF
Ga0206125_101423971	3300020165	Seawater	MERLWTHVVMDGDWEVRKFLSLREARHFAERNNLTVKATGVKPQTQRDLYKKALLECGECLF
Ga0206125_102573312	3300020165	Seawater	MDRYWTHVAMDGDWEVRKFLSLRECRDYCERNNLTVKATGVKVQTQRDIYKKALLNCGECLF
Ga0206128_13385241	3300020166	Seawater	MNRIFTHLAVDSDGWTVRKFLSLREARHFCERNDLKVVATGEKIQTQRDLF
Ga0206127_10593591	3300020169	Seawater	MNRIFTHLAVDSDGWTVRKFLSLREARHFCERNDLKVVATGEKVQTQRDLYKTAMLECGECLF
Ga0206127_11432413	3300020169	Seawater	MERIWTHVVMDGDWEVRKFLSLREARHFAERNNLTVKATGVKPQTQRDLYKKALLECGECLF
Ga0206127_11884304	3300020169	Seawater	MKRIFTHTAVDSDGWVVRKFLSLREARHFCERNGLKVVATGEKAQTQRDLYKQALLECGEAIF
Ga0206124_101467812	3300020175	Seawater	MERIWSHIVVDADGWEVRKFLSLREARHFAERNNLTVKATGVKPQTQRDLYKKALLECGECLF
Ga0206131_100654622	3300020185	Seawater	MKRIFTHTAVDSDGWVVRKFLSLREARHFCERNGLKVVATGAKKQTQRDLYKQALLECGEAIF
Ga0206131_104374061	3300020185	Seawater	HRHMEKIMDRVWTHTAVDEDGWVVRKFLSLREARHFAQRNNLSVVATGQKQRTQRDLYKQALLECGEALI
Ga0206130_100999092	3300020187	Seawater	MNRIFTHVCVDSDNYTVRKFLSLREARFFAQRNDLTVVATGDKPITQRDLYKQAMLECGKALF
Ga0211688_10919002	3300020317	Marine	MKRIFTHLAVDADGWTIRKFLSLREARNFAERNGLKVVATGEKQQTPRDLYKQSFLTCGYAPF
Ga0211677_101098955	3300020385	Marine	MKRIFTHLAVDADGWTIRKFLSLREARHFAERNGLKVVATGEKHQTQRDLYKQSLLECGFAPF
Ga0206126_102853993	3300020595	Seawater	MNRIFTHLAVDSDGWTVRKFLSLREARHFCERNDLKVVATGDKVATQRDLYKQALLQCGKALF
Ga0206677_101502234	3300021085	Seawater	MKRIFTHSAVDADGWTIRKFLSLREARHFAERNGLKVVATGEKQQTQRDLYKQSLLECGFAPF
Ga0206677_101726993	3300021085	Seawater	MDRVWTHKVVDEDGWDVRKFLSLREARHFAERNNLKVVATGNKPRTQRDLYKQALLDCGEALI
Ga0206677_101934964	3300021085	Seawater	MNRIFTHLAVDSDGWTIRKFLSLREARHFCERNGLKVVATGEKAQTQRDLYKTAMLECGEALF
Ga0206677_102317041	3300021085	Seawater	MNRIFTHICVDSDNYTIRKFLSLREARHFAERNNLTVVATGDKPVTQRDLYKQALLSCGKALF
Ga0206677_103078342	3300021085	Seawater	MDRIWTHTAVDEDGWVVRKFLSLREARHFAQRNNLSVVATGQKQRTQRDLYKQALLECGEALI
Ga0206677_104009092	3300021085	Seawater	MERLWTHVAMDGDWEVRKFLSLREARHFAERNNLTVKATGIKPQTQRDLYKKSLLECGECLF
Ga0206682_100013172	3300021185	Seawater	MKRIFTHTAVDADGWVVRKFLSLREARNFCERNGLEVVATGEKAQTQRDLYKQALLECGEAIF
Ga0206682_100131633	3300021185	Seawater	MKRIFTHTAVDSDGWVVRKFLSLREARHFCERNGLTVVATGAKKQTQRDLYKQALLECGEAIF
Ga0206123_101410892	3300021365	Seawater	MPGITFNFKEKIMQRIWTHICVDSDDYTIRKFLSLREARQFAQRNDLKVVATGDKPQTQRDIYKQAMLECGKALF
Ga0206123_103398802	3300021365	Seawater	MNRIFTHLAVDADGWTVRKFLSLREARHFAERNGLEVVATGEKKQTQRDLYKQSLLSCGYAPF
Ga0206123_104019811	3300021365	Seawater	MNRIFTHICVDSDNYTVRKFLSLREARFFAQRNDLTVVATGDKPTTQRDLYKQAMLECGKALF
Ga0213865_101041961	3300021373	Seawater	MKRIFTHTAVDSDGWVVRKFLSLREARHFCERNGLKVVATGEKAQTQRDLYKQALLECGKALF
Ga0213865_103706282	3300021373	Seawater	MNRIWTHIVVDEDNYEIRKFLSLREARHFAERNNLTVVATGEKAVTQRDLYKQALLECGEALF
Ga0222717_1000702912	3300021957	Estuarine Water	MNRIFTHLAVDADGWTIRKFLSLREARHFAERNGLKVVATGEKQQTQRDLYKQSLLECGFAPF
Ga0222717_103674783	3300021957	Estuarine Water	MDRVWTHKVVDEDGWDVRKFLSLREARHFAERNNLKVVATGNKPRTQRDLYRQALLDCGEALI
(restricted) Ga0233426_1003620211	3300022920	Seawater	MNRIFTHLAVDSDGWTIRKFLSLREARHFCERNDLKVVATGEKAQTQRDLYKTAMLECGEALF
(restricted) Ga0233426_101148861	3300022920	Seawater	MQRIWTHICVDSDDYTIRKFLSLREARHYAERNGLKVVATGEKALTQRDLYKQALLECGEAIF
(restricted) Ga0233426_101460353	3300022920	Seawater	MNRIFTHICVDSDKYTIRKFLSLREARFFAQRNNLTVVATGDKPITQRDLYKQAMLECGKALF
(restricted) Ga0233426_103089141	3300022920	Seawater	MKRIFTHTAVDSDGWVVRKFLSLREARQFCQRNGLEVVATGEKAQTQRDLYKQALLECGEAIF
(restricted) Ga0233432_100842941	3300023109	Seawater	MQRIWTHICVDSDDYTIRKFLSLREARQFAQRNDLKVVATGEKPQTQRDIYKQAMLECG
Ga0228633_10506283	3300024228	Seawater	DMDRYWTHVAMDGDWEVRKFLSLRECRDYCQRNNLTVKATGVKVQTQRDIYKKALLDCGECLF
Ga0228638_10576331	3300024230	Seawater	MQRIWTHICVDSDDYTIRKFLSLREARQFAQRNDLKVVATGDKPQTQRDIYKQAMLECGKALF
Ga0228675_10193382	3300024247	Seawater	MDRYWTHVAMDGDWEVRKFLSLRECRHFCERNNLTVKATGVKVQTQRDIYKKALLDCGECLF
Ga0228676_10007966	3300024248	Seawater	MSGRLMPGITFNFKEKIMQRIWTHICVDSDDYTIRKFLSLREARQFAQRNDLKVVATGDKPQTQRDIYKQAMLECGKALF
Ga0228676_11419842	3300024248	Seawater	THLAVDADGWTIRKFLSLREARHFAERNGLKVVATGEKQQTQRDLYKQSLLECGFAPF
(restricted) Ga0233438_1001192716	3300024255	Seawater	MERLWTHVAMDGDWEVRKFLSLREARHFAERNNLTVKATDIKPQTQRDLYKKSLLECGKCLL
(restricted) Ga0233438_101454184	3300024255	Seawater	MNRIFTHFAVDADGWTIRKFLSLREARHFAERNGLKVVATGEKQQTQRDLYKQSLLECGFAPF
(restricted) Ga0233444_101054272	3300024264	Seawater	MQRIWTHICVDSDDYTIRKFLSLREARHYAERNGLKVVATGEKAKTQRDLYKQALLECGEAIF
Ga0228629_11295991	3300024296	Seawater	MQRIWTHICVDSDDYTIRKFLSLREARQFAKRNDLKVVATGDKPQTQRDIYKQAMLECGKALF
Ga0228652_10935481	3300024326	Seawater	MQRIWTHICVDSDDYTIRKFLSLREARQYAERNGLKVVATGEKALTQRDLYKTAML
Ga0228671_10732031	3300024334	Seawater	MDRIWTHTAVDEDGWVVRKFLSLREARHFAQRNNLSVVATGQKQRTQRDLYKQALLE
Ga0244775_112423743	3300024346	Estuarine	MNRQWLYVAMDGDWAVRKFLSLREARHYCERNNLTVKSTGVKPQTQRDIYKKALLQCGEALFXGGHYGYDS
Ga0228628_10750473	3300024359	Seawater	KEKIMQRIWTHICVDSDDYTIRKFLSLREARQFAQRNDLKVVATGDKPQTQRDIYKQAMLECGKALF
Ga0209374_11077591	3300025705	Marine	MNRIFTHLAVDADGWTIRKFLSLREARHFAERNGLKVVATGEKQQTQRDLYKQSLLECGLAPF
Ga0208127_10174361	3300026201	Marine	MDRVWLYVAMDGDWEVRKFLSLREARHFAERNDLKVVATGNKPRTQRDLYKQALLRCGEALL
Ga0208127_10806201	3300026201	Marine	MDRVWTHIVVDSDGWEVRKFLSLREARHFAERNDLKVVATGQKQRTQRDLYKQALLECGEALI
Ga0228607_11192361	3300026517	Seawater	MNRIFTHLAVDSDGWTIRKFLSLREARHFCERNGLKVVATGEKAQTQRDLYKTAMLECGE
Ga0208965_10914072	3300027406	Marine	MPGITFKFKEKIMQRIWTHICVDSDDYTIRKFLSLREARQFAQRNDLKVVATGDKPQTQRDIYKQAMLECGKALF
Ga0208950_10781431	3300027413	Marine	MQRIWTHICVDSDDYTIRKFLSLREARQYAERNGLKVVATGEKALTQRDLYKTAMLECGEALF
Ga0209071_10040635	3300027686	Marine	MNRIFTHICVDSDNYTVRKFLSLREARFFAQRNDLTVVATGDKPITQRDLYKQSVLECGKALF
Ga0209502_102500771	3300027780	Marine	MNRIFTHSAVDADGWAIRKFLSLREARYFAERNGLKVVATGDKQQTQRDLYKQSFLDCGLAVF
Ga0209830_1003037510	3300027791	Marine	AVDADGWAIRKFLSLREARYFAERNGLKVVATGDKQQTQRDLYKQSFLDCGLAVF
Ga0209092_100735078	3300027833	Marine	MNRIFTHSAVDSDGWTVRKFLSLREARHFCERNDLKVVATGEKAQTQRDLY
Ga0228642_11404211	3300028131	Seawater	MNRIFTHLAVDADGWTIRKFLSLREARHFAERNGLKVVATGEKQQTQRDLYKQSLLDCGF
Ga0228609_11762661	3300028133	Seawater	MKRIFTHSAVDADGWTIRKFLSLREARHFAERNGLKVVATGEKQQTQRDLYKQSLLDCGFAPF
Ga0228640_10770151	3300028273	Seawater	MDRYWTHVAMDVDWEVRKFLSLRECRDYCQRNNLTVKATGVKVQTQRDIYKKALLDCGECLF
Ga0257120_10427672	3300028284	Marine	MQRIWTHICVDSDDYTIRKFLSLREARHYAERNGLKVVATGEKAQTQRDLYKQALLECGEAIF
Ga0228625_10475065	3300028419	Seawater	NLLRIGEIMNRIFTHLAVDSDGWTIRKFLSLREARHFCERNGLKVVATGEKAQTQRDLYKTAMLECGEALF
Ga0307488_104985021	3300031519	Sackhole Brine	MQRFWTHICVDSDDYTIRKFLSLREAREFATRNDLKVVATGVKQQTQRDIYKQAVLQCGKALF
Ga0307488_105449772	3300031519	Sackhole Brine	MNRIFTHSAVDSDGWTIRKFLSLREARHFAERNGLKVVATGEKQQTQRDLYKQSFLGCGHALF
Ga0307985_1000199122	3300031629	Marine	MKRIFTHLAVDADGWTIRKFLSLREARHFAERNGLKVVATGEKQQTPRDLYKQSFLACGYAPF
Ga0315331_100146351	3300031774	Seawater	MKRIFTHSAIDADGWTIRKFLSLREARHFAERNGLKVVATGEKQQTQRDLYKQSLLECGFAPF
Ga0315331_107028693	3300031774	Seawater	MKRIFTHSAVDADGWTIRKFLSLREARHFAERNGLKVVATGEKQQTQRDLY