Metagenome / Metatranscriptome Family F092137

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F092137
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	132 residues
Representative Sequence	MTRSAVRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSKIKIFLEGRYFGTAPLTIYSVPKGD
Number of Associated Samples	89
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.68 %
% of genes near scaffold ends (potentially truncated)	99.07 %
% of genes from short scaffolds (< 2000 bps)	94.39 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (50.467 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (9.346 % of family members)
Environment Ontology (ENVO)	Unclassified (42.991 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (70.093 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 11.27% β-sheet: 17.61% Coil/Unstructured: 71.13%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00753	Lactamase_B	36.45
PF02283	CobU	4.67
PF08241	Methyltransf_11	0.93
PF08238	Sel1	0.93
PF01219	DAGK_prokar	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2087	Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase	Coenzyme transport and metabolism [H]	4.67
COG0818	Diacylglycerol kinase	Lipid transport and metabolism [I]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.40 %
Unclassified	root	N/A	48.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.40 %
Unclassified	root	N/A	48.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.47 %
Unclassified	root	N/A	48.60 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.28 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	9.35 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	8.41 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.60 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.35 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6.54 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	4.67 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.87 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.60 %
Acidobacteria bacterium 37-65-4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 37-65-4	8.41 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5.61 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4.67 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	0.93 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.60 %
Acidobacteria bacterium 37-65-4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 37-65-4	8.41 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	4.67 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	2.80 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1.87 %
Nitriliruptorales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales	0.93 %
Methanomicrobiales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.60 %
Acidobacteria bacterium 37-65-4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 37-65-4	8.41 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.67 %
Corynebacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae	2.80 %
Nitriliruptoraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae	0.93 %
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	0.93 %
Staphylococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae	0.93 %
Methanomicrobiaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.60 %
Acidobacteria bacterium 37-65-4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 37-65-4	8.41 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.67 %
Corynebacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium	2.80 %
Alkalihalobacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Alkalihalobacillus	0.93 %
Nitriliruptor	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor	0.93 %
Methanoculleus	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus	0.93 %
Staphylococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.60 %
Acidobacteria bacterium 37-65-4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 37-65-4	8.41 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.67 %
Corynebacterium otitidis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium → Corynebacterium otitidis	2.80 %
unclassified Methanoculleus	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → unclassified Methanoculleus	0.93 %
Nitriliruptor alkaliphilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	0.93 %
Alkalihalobacillus lehensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Alkalihalobacillus → Alkalihalobacillus lehensis	0.93 %
Staphylococcus epidermidis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus epidermidis	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.60 %
Acidobacteria bacterium 37-65-4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 37-65-4	8.41 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.67 %
Corynebacterium otitidis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium → Corynebacterium otitidis	2.80 %
Methanoculleus sp. MH98A	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → unclassified Methanoculleus → Methanoculleus sp. MH98A	0.93 %
Nitriliruptor alkaliphilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	0.93 %
Alkalihalobacillus lehensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Alkalihalobacillus → Alkalihalobacillus lehensis	0.93 %
Staphylococcus epidermidis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus epidermidis	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105680150	Not Available	504	Open in IMG/M
3300004156\|Ga0062589_100959142	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	794	Open in IMG/M
3300004157\|Ga0062590_101825639	Not Available	624	Open in IMG/M
3300004463\|Ga0063356_104621497	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300004480\|Ga0062592_101585136	Not Available	632	Open in IMG/M
3300004480\|Ga0062592_102606264	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 37-65-4	510	Open in IMG/M
3300004799\|Ga0058863_11468796	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → unclassified Methanoculleus → Methanoculleus sp. MH98A	594	Open in IMG/M
3300005093\|Ga0062594_102222324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	594	Open in IMG/M
3300005093\|Ga0062594_102769809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus epidermidis	544	Open in IMG/M
3300005329\|Ga0070683_100126435	All Organisms → cellular organisms → Bacteria → Proteobacteria	2417	Open in IMG/M
3300005329\|Ga0070683_101551810	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300005334\|Ga0068869_100982644	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 37-65-4	734	Open in IMG/M
3300005338\|Ga0068868_100087040	All Organisms → cellular organisms → Bacteria → Proteobacteria	2512	Open in IMG/M
3300005338\|Ga0068868_100356476	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300005339\|Ga0070660_100164166	All Organisms → cellular organisms → Bacteria	1791	Open in IMG/M
3300005345\|Ga0070692_10978237	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 37-65-4	590	Open in IMG/M
3300005354\|Ga0070675_100963978	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300005356\|Ga0070674_101743806	Not Available	564	Open in IMG/M
3300005364\|Ga0070673_101954670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium → Corynebacterium otitidis	556	Open in IMG/M
3300005365\|Ga0070688_101720519	Not Available	514	Open in IMG/M
3300005366\|Ga0070659_102148729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Alkalihalobacillus → Alkalihalobacillus lehensis	502	Open in IMG/M
3300005367\|Ga0070667_100360783	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300005367\|Ga0070667_101099930	Not Available	743	Open in IMG/M
3300005438\|Ga0070701_10660766	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 37-65-4	699	Open in IMG/M
3300005441\|Ga0070700_101055932	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 37-65-4	671	Open in IMG/M
3300005441\|Ga0070700_101727096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium → Corynebacterium otitidis	537	Open in IMG/M
3300005456\|Ga0070678_101205905	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300005466\|Ga0070685_11186692	Not Available	580	Open in IMG/M
3300005544\|Ga0070686_101284714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	611	Open in IMG/M
3300005548\|Ga0070665_101696242	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300005549\|Ga0070704_101610413	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300005577\|Ga0068857_102494311	Not Available	508	Open in IMG/M
3300005614\|Ga0068856_102628688	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300005618\|Ga0068864_101048845	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	810	Open in IMG/M
3300005713\|Ga0066905_101046856	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300005718\|Ga0068866_10011356	All Organisms → cellular organisms → Bacteria → Proteobacteria	3851	Open in IMG/M
3300005718\|Ga0068866_10911466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 37-65-4	619	Open in IMG/M
3300005842\|Ga0068858_100581026	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300005842\|Ga0068858_101443847	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300005843\|Ga0068860_102666075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium → Corynebacterium otitidis	518	Open in IMG/M
3300006358\|Ga0068871_101049559	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300006791\|Ga0066653_10144392	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300006871\|Ga0075434_102325747	Not Available	539	Open in IMG/M
3300006904\|Ga0075424_101829613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 37-65-4	642	Open in IMG/M
3300006969\|Ga0075419_11524511	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300009137\|Ga0066709_103062689	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 37-65-4	612	Open in IMG/M
3300009156\|Ga0111538_13654063	Not Available	533	Open in IMG/M
3300009174\|Ga0105241_12408212	Not Available	526	Open in IMG/M
3300009176\|Ga0105242_10418736	All Organisms → cellular organisms → Bacteria	1255	Open in IMG/M
3300009553\|Ga0105249_10543338	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300009553\|Ga0105249_13215021	Not Available	525	Open in IMG/M
3300010373\|Ga0134128_12544433	Not Available	564	Open in IMG/M
3300010375\|Ga0105239_13489492	Not Available	511	Open in IMG/M
3300010400\|Ga0134122_11964751	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300010401\|Ga0134121_12193849	Not Available	589	Open in IMG/M
3300010403\|Ga0134123_12789542	Not Available	557	Open in IMG/M
3300012232\|Ga0137435_1208555	Not Available	598	Open in IMG/M
3300012895\|Ga0157309_10284706	Not Available	552	Open in IMG/M
3300012960\|Ga0164301_10326470	All Organisms → cellular organisms → Bacteria → Proteobacteria	1045	Open in IMG/M
3300013297\|Ga0157378_10137610	All Organisms → cellular organisms → Bacteria → Proteobacteria	2265	Open in IMG/M
3300013297\|Ga0157378_12512995	Not Available	567	Open in IMG/M
3300013306\|Ga0163162_12019373	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 37-65-4	661	Open in IMG/M
3300013308\|Ga0157375_12717404	Not Available	592	Open in IMG/M
3300014325\|Ga0163163_12619960	Not Available	562	Open in IMG/M
3300015200\|Ga0173480_10791260	Not Available	605	Open in IMG/M
3300015371\|Ga0132258_12354496	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300015372\|Ga0132256_101094702	Not Available	911	Open in IMG/M
3300015373\|Ga0132257_100857517	Not Available	1136	Open in IMG/M
3300015374\|Ga0132255_101200003	Not Available	1143	Open in IMG/M
3300015374\|Ga0132255_102128242	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	855	Open in IMG/M
3300015374\|Ga0132255_102450104	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	797	Open in IMG/M
3300015374\|Ga0132255_106215808	Not Available	505	Open in IMG/M
3300018481\|Ga0190271_10252601	All Organisms → cellular organisms → Bacteria	1797	Open in IMG/M
3300018481\|Ga0190271_12129658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	668	Open in IMG/M
3300021082\|Ga0210380_10285894	Not Available	750	Open in IMG/M
3300022915\|Ga0247790_10124485	Not Available	649	Open in IMG/M
3300023261\|Ga0247796_1045888	Not Available	749	Open in IMG/M
3300024284\|Ga0247671_1016522	Not Available	1102	Open in IMG/M
3300025290\|Ga0207673_1061793	Not Available	533	Open in IMG/M
3300025315\|Ga0207697_10097894	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300025315\|Ga0207697_10118800	Not Available	1136	Open in IMG/M
3300025885\|Ga0207653_10083532	Not Available	1109	Open in IMG/M
3300025903\|Ga0207680_11305292	Not Available	516	Open in IMG/M
3300025919\|Ga0207657_11306339	Not Available	548	Open in IMG/M
3300025920\|Ga0207649_11542503	Not Available	526	Open in IMG/M
3300025930\|Ga0207701_10056687	All Organisms → cellular organisms → Bacteria	3585	Open in IMG/M
3300025930\|Ga0207701_11292247	Not Available	598	Open in IMG/M
3300025936\|Ga0207670_11700048	Not Available	537	Open in IMG/M
3300025944\|Ga0207661_10906666	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	812	Open in IMG/M
3300025972\|Ga0207668_10302939	All Organisms → cellular organisms → Bacteria → Proteobacteria	1319	Open in IMG/M
3300025986\|Ga0207658_10854985	Not Available	827	Open in IMG/M
3300026041\|Ga0207639_11622028	Not Available	607	Open in IMG/M
3300027717\|Ga0209998_10124885	Not Available	651	Open in IMG/M
3300028379\|Ga0268266_10728348	Not Available	957	Open in IMG/M
3300028380\|Ga0268265_10186909	All Organisms → cellular organisms → Bacteria	1785	Open in IMG/M
3300028380\|Ga0268265_10548926	Not Available	1097	Open in IMG/M
3300028790\|Ga0307283_10272013	Not Available	503	Open in IMG/M
3300031226\|Ga0307497_10099304	Not Available	1131	Open in IMG/M
3300031421\|Ga0308194_10318228	Not Available	544	Open in IMG/M
3300031716\|Ga0310813_10581985	Not Available	988	Open in IMG/M
3300031716\|Ga0310813_11984407	Not Available	549	Open in IMG/M
3300031944\|Ga0310884_10613702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	651	Open in IMG/M
3300032012\|Ga0310902_10787150	Not Available	647	Open in IMG/M
3300032075\|Ga0310890_11659428	Not Available	529	Open in IMG/M
3300032211\|Ga0310896_10174896	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300034678\|Ga0314803_138281	Not Available	509	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	53.27%
Environmental	Environmental	46.73%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	52.34%
Terrestrial	Environmental → Terrestrial	44.86%
Aquatic	Environmental → Aquatic	1.87%
Human	Host-Associated → Human	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	25.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.23%
Roots	Host-Associated → Plants → Roots	1.87%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Sediment	Environmental → Aquatic → Sediment	0.93%
Digestive System	Host-Associated → Human → Digestive System	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	18.69%
Loam	Environmental → Terrestrial → Soil → Loam	14.02%
Soil	Host-Associated → Plants → Rhizosphere → Soil	14.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.61%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.87%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.93%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	18.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	14.02%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.21%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.67%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.67%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.35%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.74%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.74%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300023261	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S166-409R-6	Environmental	Open in IMG/M
3300024284	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK12	Environmental	Open in IMG/M
3300025290	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Host-Associated	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300034678	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1056801501	3300000364	Soil	MTRSAVLPRTSPKRDSRLVSSGWGITLLAVLFGGATLLSSGPALAKKKKSAEPTQATDEASPGDKTEKEAKPSEQAGDTEKPKTILDTSQEAPKTD
Ga0062589_1009591421	3300004156	Soil	MTRSVVLPRTSPGRFVPSVWGITLLAMVFGGATLLPARTALAKKKKAETTQQTDEAAPGEAKPEKPADQAGDTEKPKTILDTSQEAPKTDSLGHVHFG
Ga0062590_1018256391	3300004157	Soil	MTRSVVLPRTSPGRFVPSVWGITLLAVLFGGATLLPARTALAKKKKAEPTQATDEASPGDKAEKAEKPADQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESKIKIFLEGRYFGLAPLTIYSVP
Ga0063356_1046214972	3300004463	Arabidopsis Thaliana Rhizosphere	MTRSALRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSKIKIFLEGRYFGTAPLTIY
Ga0062592_1015851362	3300004480	Soil	MTRSVVRSRTSPGLLVPSAWSCALVAMLFGGATLLSTRPALAKKKKSDTPAQATDEASPGDKPAKDEKPAEQAGDTEKPKTILDTSQDAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAP
Ga0062592_1026062641	3300004480	Soil	MTRSVVLPRTSPGRFVPSVWGITLLAVLFGGATLLPARTALAKKKKAEPTQATDEASPGDKAEKAEKPADQAGDTEKPKTILDTSQEAPKTDSLGH
Ga0058863_114687961	3300004799	Host-Associated	MTRSVVRLRTSPGRLVTSGWGIALVAMLFGGATLFTARPALAKKKKAAEPTQATDEASPPADQAEKPGKPAEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNGEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYPSGKQISKPVSVGSPSSASTSATSSPTARWGPRELAMSSRP
Ga0062594_1022223241	3300005093	Soil	MTRSVVLRRTSPGRFVPSVWGITLLAMLFGGATLLPARTALAKKKKAETTQQTDDAAPGEAKPEKPAEQAGDVEKPKTILDTSQEAPKTDSLGHVHF
Ga0062594_1027698091	3300005093	Soil	MTRSAVLPRTSPKRDSRLVPKGWSIALLAVLFGGATLLSAAPAEAKKKKSAEPTQATDEASPNDKPEKEAKPSEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNTEGLGRVAVKADPVS
Ga0070683_1001264354	3300005329	Corn Rhizosphere	MTRSVVRLRTSPGRLVTSGWGIALVAMLFGGATLFTARPALAKKKKAAEPTQATDEASPPADQAEKPSKPAEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGS
Ga0070683_1015518102	3300005329	Corn Rhizosphere	MTRSAAVHRTSPGRLVSSGWGITLLAVLFGGATLLSAGPALAKKKKAAEPTQATDEASPDKPADKPEKPADQAGDTEKPKTILDTSQEAPK
Ga0068869_1009826442	3300005334	Miscanthus Rhizosphere	MTRSAVLPRTSPKRDSRLVPKGWSIALLAVLFGGATLLSAAPAEAKKKKSAEPTQATDEASPNDKPEKEAKPSEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPK
Ga0068868_1000870401	3300005338	Miscanthus Rhizosphere	MTRSAVHSRTSPGRLVPPVWGITLLAVLFGGATFLSTSPALAKKKKAEPSQATDEASPEDKPKNEKPAEQAGDVEKPKTILDTEQQAPKTDSLGHVHFASPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQVSR
Ga0068868_1003564762	3300005338	Miscanthus Rhizosphere	MTRSAVLPRTSPKRDSRLVPKGWSIALLAVLFGGATLLSAAPAEAKKKKSAEPTQATDEASPNDKPEKEAKPSEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVFANGKQVSRP
Ga0070660_1001641663	3300005339	Corn Rhizosphere	MTRSALRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKA
Ga0070692_109782371	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MTRSVVLRRTSPGRFVPSVWGITLLAMLFGGATLLPARTALAKKKKAETTQQTDDAAPGEAKPEKPAEQAGDVEKPKTILDTSQEAPKTDSLGHVHFGS
Ga0070675_1009639781	3300005354	Miscanthus Rhizosphere	MTRSAVHSRTSPGRLVPPVWGITLLAVLFGGATFLSTSPALAKKKKAEPSQATDEASPEDKPKNEKPAEQAGDVEKPKTILDTEQQAPKTDSLGHVHFASPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQVSRPVSV
Ga0070674_1017438061	3300005356	Miscanthus Rhizosphere	MTRSAVRSRTSPGRLVTKGWGIALLAVLFGGSTLLSASPALAKKKKSGPTTQATDEASPPADGEQPKDAKPAEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPEQKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQV
Ga0070673_1019546701	3300005364	Switchgrass Rhizosphere	MTRSALRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQVSR
Ga0070688_1017205191	3300005365	Switchgrass Rhizosphere	PSNQDPLMTRSAVRSLTSPGRLVTKGWGIALLAVLFGGATLLSTNTAVAAKKKKGGAATQATDDASPPAEGESKKDEKPAEQAGDVEKPRTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPEQKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYANGKQVSRP
Ga0070659_1021487291	3300005366	Corn Rhizosphere	MTRSAVRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGL
Ga0070667_1003607833	3300005367	Switchgrass Rhizosphere	MTRSVVLPRTSPGRFVPSVWGITLLAVLFGGATLLPARTALAKKKKAEATQATDEASPGEKSEKAEKPADQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNAE
Ga0070667_1010999302	3300005367	Switchgrass Rhizosphere	MTRSVALSGTSPGRFVPSVWGITLLAVLFGGATLLPARTALAKKKKAEPTQQTDEAAPPAEKTEKPSEQAGDVEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKAAPESKIKIFLEGRYF
Ga0070701_106607662	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MTRSVVRSRTSPGLLVPSAWSCALVAMLFGGATLLSTRPALAKKKKSDTPAQATDEASPGDKPAKDEKPAEQAGDTEKPKTILDTSQDAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYS
Ga0070700_1010559322	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MTRSVVRSRTSPGLLVPSAWSCALVAMLFGGATLLSTRPALAKKKKSDTPAQATDEASPGDKPAKDEKPAEQAGDTEKPKTILDTSQDAPKTDSLGHVHFGSPNADGLGRVAVKAAPESKIKIFLEGRYFGTAPLTI
Ga0070700_1017270961	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MTRSAVHSRTSPGRLVPPVWGITLLAVLFGGATFLSTSPALAKKKKAEPSQATDEASPEDKPKNEKPAEQAGDVEKPKTILDTEQQAPKTDSLGHVHFASPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGDYI
Ga0070678_1012059051	3300005456	Miscanthus Rhizosphere	MTRSVVASVTIALLFGGVVLLPASPALAKKKKASADEPAVQVNDEGAPAASGKSADQVGDTEKPKSILDTSQDAPKTDSLGHVHFGSPNASGIGRVAVKASPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVFA
Ga0070685_111866921	3300005466	Switchgrass Rhizosphere	MTRSAVLPRTSPGRLVSSGWGITLLAVLFGGATLLSSGPALAKKKKSAEPTQATDEASPGDKTEKEAKPSEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNTEGLGRVAVKADPVSKIKIFLEGRYFGTAP
Ga0070684_1018000312	3300005535	Corn Rhizosphere	MTRSAAVHRTSPGRLVSSGWGITLLAVLFGGATLLSAGPALAKKKKAAEPTQATDEASPDKPADKPEKPADQAGDTEKPKTILDTSQE
Ga0070686_1012847141	3300005544	Switchgrass Rhizosphere	MTRSVVASVTIALLFGGVVLLPASPALAKKKKASSDEPAVQVNDEGAPAASGKSADQVGDTEKPKTILDTSQDAPKTDSLGHVHFGSPNASGIGRVAVKASPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGK
Ga0070665_1016962421	3300005548	Switchgrass Rhizosphere	MTRSVVLRRTSPGRFVPSVWGITLLAMVFGGATLLPARTALAKKKKAETTQQTDDAAPGEAKPEKPAEQAGDVEKPKTILDTSQEAPKTDSLGHVHFGS
Ga0070704_1016104132	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTRSALRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKAAPES
Ga0068857_1024943111	3300005577	Corn Rhizosphere	MLFGGATLLSTRPALAKKKKSDTPAQATDEASFGDKPAKDEKPAEQAGDTEKPKTILDTSQDAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQVSRPV
Ga0068856_1026286882	3300005614	Corn Rhizosphere	MTRSVVLARTSPGRFVPSVWGITLLTVLFGGATLLPARTALAKKKKSAEPTQQTDEASPPAEKNEKPADQAGDTEKPKTILDTSQEAPK
Ga0068864_1010488451	3300005618	Switchgrass Rhizosphere	MTRSVVLPRTSPGRFVPSVWGITLLAMVFGGATLLPARTALAKKKKAETTQQTDEAAPGEAKPEKPADQAGDTEKPKTILDTSQEAP
Ga0066905_1010468562	3300005713	Tropical Forest Soil	MTRSAVLPRTSPGRHVPSGWGIALLAVLFGGATLLSSGPALAKKKKSAEPAQATDEASPSDKPEKDAKPSEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNSEGLGRVAV
Ga0068866_100113565	3300005718	Miscanthus Rhizosphere	MTRSAVRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSKIKIFLEGRYFGTAPLTIYSVPKGD
Ga0068866_109114662	3300005718	Miscanthus Rhizosphere	MTRSVVLRRTSPGRFVPSVWGITLLAMLFGGATLLPARTALAKKKKAETTQQTDDAAPGEAKPEKPAEQAGDVEKPKTILDTSQEAPKTDSLGHVHFG
Ga0068858_1005810261	3300005842	Switchgrass Rhizosphere	MTRSAVLPRTSPGRLVPKGWSIALLAVLFGGATLLSAAPAEAKKKKSAEPTQATDEASPNDKPEKEAKPSEQAGDTEKPKTILDTSQEAPKTDSLGHVHF
Ga0068858_1014438472	3300005842	Switchgrass Rhizosphere	MTRSVVLRRTSPGRFVPSVWGITLLAVLFGGATLLPARTALAKKKKAEPTQQTDEAAPPAEKTEKPSEQAGDVEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAMYANGKQISKPVSV
Ga0068860_1026660751	3300005843	Switchgrass Rhizosphere	MTRSAVHSRTSPGRLVPPVWGITLLAVLFGGATFLSTSPALAKKKKAEPSQATDEASPEDKPKNEKPAEQAGDVEKPKTILDTEQQAPKTDSLGHVHFASPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGD
Ga0068871_1010495591	3300006358	Miscanthus Rhizosphere	MTRSAAVHRTSPGRLVSSGWGITLLAVLFGGATLLSAGPALAKKKKAAEPTQATDEASPDKPADKPEKPADQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVE
Ga0066653_101443921	3300006791	Soil	MTRSVVRSRTSPGRFVSSGWGIALLAVLFGGSTLLSARPALAKKKKAEAATQATDEASPPAEKNEKPAEQAGDVEKPKRILDTSQEAPKTDSLGHIHFGSPNAEGLGRVAVKAPPESKIKIFLEGRYFGTAPLTIYSVPKGDYILEAVYANGKEVPKPVSVGENDDAVIDLG
Ga0075434_1023257471	3300006871	Populus Rhizosphere	MTRSAVLPRTSPRDSRLVSSGWGIALLAVLFGGTTLLSSGPAFAKKKKSAEPAQATDEASPGDKPKEDAKPAEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKADPQSKIKIFLEGRYFGTAPLTIYSVPKGDYIVE
Ga0075424_1018296131	3300006904	Populus Rhizosphere	MTRSVVRSRTSPGLLVPSAWSCALVAMLFGGATLLSTRPALAKKKKQDTPAQATDEAAPGDKPAKDEKPVEQAGDTEKPKTILDTSQDAPKTDSLGHVHFGSPNAEGLGRVTVKAAPESKIKIFLEGRYF
Ga0075419_115245111	3300006969	Populus Rhizosphere	MTRSVVRSRTSPGLLVPSAWSCALVAMLFGGATLLSTRPALAKKKKSDTPAQATDEASPGDKPAKDEKPAEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNAEG
Ga0066709_1030626892	3300009137	Grasslands Soil	MTRSVVLARTSPGRFVPSVWGITLLAVLFGGATLLPARTALAKKKKSAEPTQQTDEASPPAEKNEKPAEQAGDVEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGVGRVAVKAAPESKIKIFLEG
Ga0111538_136540631	3300009156	Populus Rhizosphere	MTRSAVRSLTSPGRLVTKGWSVALLAVLFGGATLLSTSPALAKKKKGGPATQATDAASPPAEGEQKSEKPADQAGDVEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPEQKIKIFLEGRYFGT
Ga0105241_124082121	3300009174	Corn Rhizosphere	PSNQDPLMTRSALRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQVSRPVSVGENEETA
Ga0105242_104187361	3300009176	Miscanthus Rhizosphere	MTRSVVLRRTSPGRFVPSVWGITLLAVLFGGATLLPARTALAKKKKAEPTQQTDEAAPPAEKNEKPSEQAGDVEKPKTILDTSQEAPKTDSLGHVHFGSPNGEGLGRVAVKAA
Ga0105249_105433381	3300009553	Switchgrass Rhizosphere	MTRSALRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADP
Ga0105249_132150211	3300009553	Switchgrass Rhizosphere	MTRSVVLRRTSPGRFVPSVWGITLLAMLFGGATLLPARTALAKKKKAETTQQTDDAAPGEAKPEKPAEQAGDVEKPKTILDTSQEAPKTDSLGHVHFGSPNGEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKG
Ga0134128_125444331	3300010373	Terrestrial Soil	VLFGGATLLSAAPAEAKKKKSAEPTQATDEASPNDKPEKEAKPSEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNTEGLGRVAVKADPVSKIKIFLEGRYFGTAPLTIYSVPKGDYIVEGRYADGRQVSRPVSVSENEEATVDLAQGKIESPGGKSSSGMFS
Ga0105239_134894921	3300010375	Corn Rhizosphere	MTRSALRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSKIKIFLEGRYF
Ga0134122_119647512	3300010400	Terrestrial Soil	MTRSAVRSRTSPGRLVTKGWGIALLAVLFGGSTLLSASPALAKKKKSGPTTQATDEASPPADGEQPKDAKPAEQAGDTEKPKTILDTSQEAPKTD
Ga0134121_121938491	3300010401	Terrestrial Soil	VLFGGATLLSAAPAEAKKKKSAEPTQATDEASPNDKPEKEAKPSEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNTEGLGRVAVKADPVSKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQVSRPVS
Ga0134123_127895422	3300010403	Terrestrial Soil	MTRSAVLPRTSPKRDSRLVPKGWSIALLAVLFGGATLLSAAPAEAKKKKSAEPTQATDEASPNDKPEKEAKPSEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPEQKIKIFVEGRYFGT
Ga0137435_12085551	3300012232	Soil	MTRSAVLSGTSPGRLVSSGWGITLLAVLFGGATLLSAGPALAKKKKDASPTQATDEASPGDKPKEDAKPAEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYANGKQLSRPVS
Ga0157309_102847061	3300012895	Soil	MTRSVVASVTIALLFGGVVLLPASPALAKKKKASSDEPAVQVNDEGAPAASGKSADQVGDTEKPKTILDTSQDAPKTDSLGHVHFGSPNASGIGRVAVKASPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQV
Ga0164301_103264703	3300012960	Soil	MTRSVALSGTSPGRFVPSVWGITLLAVLFGGATLLPARTALAKKKKAEPTQQTDEAAPPAEKTEKPSEQAGDVEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKAAPESK
Ga0157378_101376104	3300013297	Miscanthus Rhizosphere	MTRSALRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQVSRP
Ga0157378_125129951	3300013297	Miscanthus Rhizosphere	VLFGGATFLSTSPALAKKKKAEPSQATDEASPEDKPKNEKPAEQAGDVEKPKTILDTEQQAPKTDSLGHVHFASPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQVSRP
Ga0163162_120193731	3300013306	Switchgrass Rhizosphere	MTRSAVRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSKIKIFLEGR
Ga0157375_127174041	3300013308	Miscanthus Rhizosphere	MLFGGATLLSTRPALAKKKKSDTPAQATDEASPGDKPAKDEKPAEQAGDTEKPKTILDTSQDAPKTDSLGHVHFGSPNAEGLGRVAVKAAPEQKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYANGKQVSRPVSVGE
Ga0163163_126199601	3300014325	Switchgrass Rhizosphere	MTRSVALSGTSPGRFVPSVWGITLLAVLFGGATLLPARTALAKKKKAEPTQQTDEAAPPAEKNEKPSEQAGDVEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESKIKIFLEGRYFGT
Ga0173480_107912601	3300015200	Soil	MTRSVVLPRTSPGRFVPSVWGITLLAVLFGGATLLPARTALAKKKKAEPTQATDEASPGDKAEKAEKPADQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESKIKIFLEGRYFGLAPLTIYSVPKGDYIVEAMYPN
Ga0132258_123544961	3300015371	Arabidopsis Rhizosphere	MTRSAVRSLTSPGRLVTKGWSVALLAVLFGGATLLSTSPALAKKKKGGPATQATDAASPPAEGEQKSEKPADQAGDTEKPKAILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPEQKIKIFLEGRYFGTAPLTIYS
Ga0132256_1010947022	3300015372	Arabidopsis Rhizosphere	MTRSVVRSRTSPGRFVSSGWGIALLAVLFGGSTLLSARPALAKKKKAEAATQATDEANPPAEKNEKPAEQAGDTEKPKRILDTSQDAPKTDSLGHVHFGAPNAEGLGRVAVKGPPESKIKIFLEGRYFGTAPLTIYSVPKGDYILEAVYANGKEVPK
Ga0132257_1008575171	3300015373	Arabidopsis Rhizosphere	MTRSAVRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSKIKILLEGRYFGTAPLTIYSVPKGDYIVEAV
Ga0132255_1012000032	3300015374	Arabidopsis Rhizosphere	MTRSAVVHRTSPGRLVASGWGITLLAVVFGAGTLLPSRPALAKKKKAEATQQATDEASPPAEKSENPAAQVGDTEKPKAILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPEQKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQVSRPVSVGENEET
Ga0132255_1021282422	3300015374	Arabidopsis Rhizosphere	MTRSVALSGTSAGRLVPSVWGITLLAVLFGGATLLPARTALAKKKKSAETTQQTDEAAPGEAKPEKPAEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNGEGLGRVAVK
Ga0132255_1024501041	3300015374	Arabidopsis Rhizosphere	MTRSAVLPRTSPGRLVSSGWGITLLAVLFGGATLLSSGPALAKKKKSAEPTQATDEASPGDKTEKETKPSEQAGDTEKPKTILDTSQE
Ga0132255_1062158081	3300015374	Arabidopsis Rhizosphere	LMTRSAVRSLTSPGRLVTKGWGIALLAVLFGGATLLSTNTAVAAKKKKGGAATQATDEASPPAEGESKKDEKPAEQAGDTEKPRTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPEQKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYANGKQVSRPVSVG
Ga0190271_102526014	3300018481	Soil	MTRSVVASLTIALLFGGVVLLPASPALAKKKKASSDEPAVQATDESPAPGKTADQVGDTEKPKSILDTSQDAPKTDSLGHVHFGSPNANGIGRVAVKASPESRIKIFLEGRYFGTAPLTIYSVPKCD
Ga0190271_121296582	3300018481	Soil	MTRSVVRSRTSPGLLVPSAWSCALVAMLFGSATLLSTRPALAKKKKQDAPAQATDEASPGDKPAKDEKPAEQAGDVEKPKTILDTSQDAPKTDSLGHVHFGSPNAEGLGRVAVKAPPESKIKIFL
Ga0210380_102858942	3300021082	Groundwater Sediment	MTRSAVPLRTSPGRLVSKGWGIALLAVLFGAGTLLSARPALAKKKKSETPTQATDEASPPSEKAEKSEKPAEQAGDVEKPKTILDTSQDAPKTDSLGHVHFGSPNADGLGRVAVKA
Ga0247790_101244852	3300022915	Soil	MTRSAVRSLTSPGRLVTKGWSVALLAVLFGGATLLSTSPALAKKKKGGAATQATDAASPPAEGEQKSEKPADQAGDVEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPEQKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQ
Ga0247796_10458881	3300023261	Soil	MTRSAVRSLTSPGRLVTKGWSVALLAVLFGGATLLSTSPALAKKKKGGAATQATDAASPPAEGEQKSEKPADQAGDVEKPKTILDTSQEAPKTDSLGHVHFGSPNA
Ga0247671_10165222	3300024284	Soil	MTRSGFRSRTSPGRLVPSVWGISLLAVLFGGATLLSTSPAFAKKKKAAEPTQATDEASPEDKPKNEKPAEQAGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKAAPEQKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSGGKQV
Ga0207673_10617932	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	MTRSVVLRRTSPGRFVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSK
Ga0207697_100978941	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTRSVVLRRTSPGRFVPSVWGITLLAMLFGGATLLPARTALAKKKKAETTQQTDDAAPGEAKPEKPAEQAGDVEKPKTILDTSQEAPKTDSLGHVHFGSPNGEG
Ga0207697_101188002	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTRSALRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVY
Ga0207653_100835321	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MTRSAVRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQVSR
Ga0207680_113052921	3300025903	Switchgrass Rhizosphere	MTRSAVRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQVSRP
Ga0207657_113063392	3300025919	Corn Rhizosphere	MTRSALRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSK
Ga0207649_115425031	3300025920	Corn Rhizosphere	MTRSVVLRRTSPGRFVPSVWGITLLAVLFGGATLLPARTALAKKKKAEATQATDEASPGEKPEKAEKPADQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESKIKIFLEGRYFGLAPLTIYSVPKGDY
Ga0207701_100566871	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MTRSVVLRRTSPGRFVPSVWGITLLAMLFGGATLLPARTALAKKKKAETTQQTDDAAPGEAKPEKPAEQAGDVEKPKTILDTSQEAPKTDSLGHVHFGSPNGEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQVSRPV
Ga0207701_112922471	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MTRSVVLPRTSPGRFVPSVWGITLLAVLFGGATLLPARTALAKKKKAEPTQATDEASPGDKAEKAEKPADQAGDTEKPKTILDTSQDAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQVS
Ga0207670_117000481	3300025936	Switchgrass Rhizosphere	MTRSAAVHRTSPGRLVSSGWGITLLAVLFGGATLLSAGPALAKKKKAAEPTQATDEASPDKPADKPEKPADQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVY
Ga0207661_109066661	3300025944	Corn Rhizosphere	MTRSAAVHRTSPGRLVSSGWGITLLAVLFGGATLLSAGPALAKKKKAAEPTQATDEASPDKPADKPEKPADQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESK
Ga0207668_103029393	3300025972	Switchgrass Rhizosphere	MTRSALRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSKIKIF
Ga0207658_108549851	3300025986	Switchgrass Rhizosphere	MTRSVALSGTSPGRFVPSVWGITLLAVLFGGATLLPARTALAKKKKAEPTQQTDEAAPPAEKTEKPSEQAGDVEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAMYANG
Ga0207639_116220282	3300026041	Corn Rhizosphere	MTRSVVLRRTSPGRFVPSVWGITLLAMVFGGATLLPARTALAKKKKAETTQQTDEAAPGEAKPEKPADQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNGEGLGRVAVKAAPESKIKIFLEGRYFGTAPLNIYSVPKGDYIVEAMY
Ga0209998_101248851	3300027717	Arabidopsis Thaliana Rhizosphere	LLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQV
Ga0268266_107283482	3300028379	Switchgrass Rhizosphere	MTRSVVLRRTSPGRFVPSVWGITLLAMVFGGATLLPARTALAKKKKAETTQQTDDAAPGEAKPEKPAEQAGDVEKPKTILDTSQEAPKTDSLGHVHFGSPNGEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAM
Ga0268265_101869091	3300028380	Switchgrass Rhizosphere	MTRSAVRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSK
Ga0268265_105489262	3300028380	Switchgrass Rhizosphere	MTRSVVRSRTSPGLLVPSAWSCALVAMLFGGATLLSTRPALAKKKKSDTPAQATDEASPGDKPAKDEKPAEQAGDTEKPKTILDTSQDAPKTDSLGHVHFGSPNADGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQVSRPV
Ga0307283_102720132	3300028790	Soil	MTRSVVLARTSPGRFVPSVWGITLLTVLFGGATLLPARTALAKKKKSAEPTQQTDEASPPAEKNEKPADQAGDTEKPKTILDTSQEAPKTDSLGHVH
Ga0307497_100993042	3300031226	Soil	MTRSVVRSRTSPGLLVPSAWSCALVAMLFGGATLLSTRPALAKKKKSDTPAQATDEAAPGDKPEKAEKPAEQAGDTEKPKTILDTSQDAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESKIKIFLEGRY
Ga0308194_103182281	3300031421	Soil	RTSPGRFVPSVWGITLLAVLFGGATLLPARTALAKKKKSAEPTQQTDEASPPAEKNEKPAEQAGDVEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRGAVKGPPESKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAASANGKQISKPVSVGEIEETAVDLGGTAMKQASGPGMFDAA
Ga0310813_105819852	3300031716	Soil	MTRSAVLPRTSPRDSRLVSSGWGIALLAVLFGGTTLLSSGPAFAKKKKSAEPAQATDEASPGDKPKEDAKPAEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNAEGLGRVAVKADPQSKIKIFLEGRYFGTAPLTIYSV
Ga0310813_119844072	3300031716	Soil	MTRSVVRLRTSPGRLVTSGWGIALVAMLFGGATLFTARPALAKKKKAAEPTQATDEASPPAEQADKPGKPAEQAGDTEKPKTILDTSQEAPKTDSLGHVHFGSPNSEGLGRVAVKAAPESKI
Ga0310884_106137021	3300031944	Soil	MTRSVVRSRTSPGLLVPSAWSCALVAMLFGGATLLSTRPALAKKKKSDTPAQATDEASPGDKPAKDEKPAEQAGDTEKPKTILDTSQDAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESKIKI
Ga0310902_107871501	3300032012	Soil	MTRSVVRSRTSPGLLVPSAWSCALVAMLFGGATLLSTRPALAKKKKSDTPAQATDEASPGDKPAKDEKPAEQAGDTEKPKTILDTSQDAPKTDSLGHVHFGSPNAEGLGRVAVKAAPESKIKIFLEGRYFGTAPLTIYSVP
Ga0310890_116594281	3300032075	Soil	MTRSAVRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVS
Ga0310896_101748962	3300032211	Soil	MTRSAVRSRTSPGRLVPSVWGITLLTLLFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPN
Ga0314803_138281_2_424	3300034678	Soil	LFGGATLLSTSPALAKKKKAEPTQATDEASPEDKPKNEKPSDQVGDTEKPKTILDTSQEAPKTDSLGHVHFASPNAEGLGRVAVKADPVSKIKIFLEGRYFGTAPLTIYSVPKGDYIVEAVYSNGKQVSRPVSVGENEETT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092137

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences