Metagenome / Metatranscriptome Family F092124

Basic Information
Family ID	F092124
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	78 residues
Representative Sequence	KEISDLDRLLQINQRGGFTSGTQLYDYLQRHNCVGLTEGRARVYANKGQYVCIYDPKNRNKAIKPCAWTRREMLSK
Number of Associated Samples	94
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	13.00 %
% of genes near scaffold ends (potentially truncated)	84.11 %
% of genes from short scaffolds (< 2000 bps)	87.85 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Most Common Taxonomy
Group	Unclassified (72.897 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (43.925 % of family members)
Environment Ontology (ENVO)	Unclassified (32.710 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.187 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.88% β-sheet: 8.65% Coil/Unstructured: 63.46%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01381	HTH_3	5.61
PF01527	HTH_Tnp_1	1.87
PF01042	Ribonuc_L-PSP	0.93
PF04430	DUF498	0.93
PF00365	PFK	0.93
PF06283	ThuA	0.93
PF05362	Lon_C	0.93
PF06381	DUF1073	0.93
PF13276	HTH_21	0.93
PF01068	DNA_ligase_A_M	0.93
PF12770	CHAT	0.93
PF13442	Cytochrome_CBB3	0.93
PF06904	Extensin-like_C	0.93
PF00873	ACR_tran	0.93
PF03401	TctC	0.93
PF00248	Aldo_ket_red	0.93
PF12161	HsdM_N	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0205	6-phosphofructokinase	Carbohydrate transport and metabolism [G]	0.93
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.93
COG0466	ATP-dependent Lon protease, bacterial type	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1067	Predicted ATP-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.93
COG1504	Uncharacterized conserved protein, DUF498 domain	Function unknown [S]	0.93
COG1750	Predicted archaeal serine protease, S18 family	General function prediction only [R]	0.93
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.93
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.93
COG3480	Predicted secreted protein YlbL, contains PDZ domain	Signal transduction mechanisms [T]	0.93
COG3737	Uncharacterized protein, contains Mth938-like domain	Function unknown [S]	0.93
COG3921	Uncharacterized conserved protein, contains Extensin-like_C domain	Function unknown [S]	0.93
COG4813	Trehalose utilization protein	Carbohydrate transport and metabolism [G]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
All Organisms	root	All Organisms	27.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
cellular organisms	root	All Organisms → cellular organisms	27.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	27.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	20.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	17.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.48 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.61 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.74 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.74 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.87 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.93 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.74 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.87 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.93 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.93 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.74 %
Nitrobacter hamburgensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.87 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.93 %
Azospirillum thiophilum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum thiophilum	0.93 %
Mesorhizobium plurifarium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.90 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.74 %
Nitrobacter hamburgensis X14	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis → Nitrobacter hamburgensis X14	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.87 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Azospirillum thiophilum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum thiophilum	0.93 %
Mesorhizobium plurifarium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459005\|F1BAP7Q02IOSW5	Not Available	503	Open in IMG/M
3300000787\|JGI11643J11755_11794197	Not Available	530	Open in IMG/M
3300001164\|JGI11823J13286_1003870	Not Available	1015	Open in IMG/M
3300001686\|C688J18823_10774527	Not Available	609	Open in IMG/M
3300004114\|Ga0062593_103090812	Not Available	533	Open in IMG/M
3300004156\|Ga0062589_102595117	Not Available	526	Open in IMG/M
3300004463\|Ga0063356_101367419	Not Available	1040	Open in IMG/M
3300004480\|Ga0062592_100192202	Not Available	1428	Open in IMG/M
3300005148\|Ga0066819_1026479	Not Available	512	Open in IMG/M
3300005165\|Ga0066869_10082413	Not Available	618	Open in IMG/M
3300005165\|Ga0066869_10139031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	517	Open in IMG/M
3300005328\|Ga0070676_10717637	All Organisms → cellular organisms → Bacteria → Proteobacteria	731	Open in IMG/M
3300005439\|Ga0070711_100212051	All Organisms → cellular organisms → Bacteria → Proteobacteria	1500	Open in IMG/M
3300005445\|Ga0070708_100957644	Not Available	803	Open in IMG/M
3300005455\|Ga0070663_100627542	Not Available	906	Open in IMG/M
3300005471\|Ga0070698_100742326	Not Available	924	Open in IMG/M
3300005564\|Ga0070664_100542283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1075	Open in IMG/M
3300005841\|Ga0068863_102164591	Not Available	566	Open in IMG/M
3300006358\|Ga0068871_102386077	Not Available	504	Open in IMG/M
3300006881\|Ga0068865_101065942	Not Available	710	Open in IMG/M
3300006881\|Ga0068865_101491163	Not Available	606	Open in IMG/M
3300007076\|Ga0075435_101757181	Not Available	544	Open in IMG/M
3300009156\|Ga0111538_12474996	Not Available	651	Open in IMG/M
3300009176\|Ga0105242_10686984	Not Available	1000	Open in IMG/M
3300010159\|Ga0099796_10293839	Not Available	687	Open in IMG/M
3300010375\|Ga0105239_10576539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1282	Open in IMG/M
3300010403\|Ga0134123_11508865	Not Available	717	Open in IMG/M
3300012212\|Ga0150985_108922859	Not Available	1537	Open in IMG/M
3300012469\|Ga0150984_114517964	Not Available	1224	Open in IMG/M
3300012957\|Ga0164303_10445471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis → Nitrobacter hamburgensis X14	813	Open in IMG/M
3300012961\|Ga0164302_11776868	Not Available	520	Open in IMG/M
3300012984\|Ga0164309_10703711	Not Available	802	Open in IMG/M
3300012985\|Ga0164308_10162303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1664	Open in IMG/M
3300012985\|Ga0164308_12293487	Not Available	502	Open in IMG/M
3300013307\|Ga0157372_12102907	Not Available	649	Open in IMG/M
3300015241\|Ga0137418_10175946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1867	Open in IMG/M
3300015374\|Ga0132255_100037043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6243	Open in IMG/M
3300016294\|Ga0182041_11248951	Not Available	679	Open in IMG/M
3300018027\|Ga0184605_10322375	Not Available	699	Open in IMG/M
3300018028\|Ga0184608_10176453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis → Nitrobacter hamburgensis X14	930	Open in IMG/M
3300018028\|Ga0184608_10321948	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300018028\|Ga0184608_10375585	Not Available	621	Open in IMG/M
3300018054\|Ga0184621_10086957	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300018055\|Ga0184616_10314250	Not Available	592	Open in IMG/M
3300018061\|Ga0184619_10172582	Not Available	990	Open in IMG/M
3300018072\|Ga0184635_10323619	Not Available	598	Open in IMG/M
3300019356\|Ga0173481_10038135	Not Available	1587	Open in IMG/M
3300019356\|Ga0173481_10559263	Not Available	594	Open in IMG/M
3300019869\|Ga0193705_1081412	Not Available	623	Open in IMG/M
3300019872\|Ga0193754_1032336	Not Available	556	Open in IMG/M
3300019875\|Ga0193701_1090251	Not Available	582	Open in IMG/M
3300019876\|Ga0193703_1070640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	517	Open in IMG/M
3300019885\|Ga0193747_1156557	Not Available	514	Open in IMG/M
3300019887\|Ga0193729_1161337	Not Available	800	Open in IMG/M
3300019887\|Ga0193729_1211147	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300020002\|Ga0193730_1118673	Not Available	726	Open in IMG/M
3300021078\|Ga0210381_10038102	Not Available	1389	Open in IMG/M
3300021078\|Ga0210381_10162327	Not Available	763	Open in IMG/M
3300021080\|Ga0210382_10357933	Not Available	644	Open in IMG/M
3300021363\|Ga0193699_10140346	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300021418\|Ga0193695_1101925	Not Available	614	Open in IMG/M
3300023077\|Ga0247802_1103123	Not Available	500	Open in IMG/M
3300025938\|Ga0207704_10862289	Not Available	760	Open in IMG/M
3300025942\|Ga0207689_10155398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum thiophilum	1886	Open in IMG/M
3300026035\|Ga0207703_11485388	Not Available	652	Open in IMG/M
3300026116\|Ga0207674_11877062	Not Available	565	Open in IMG/M
3300027738\|Ga0208989_10224469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300028704\|Ga0307321_1069968	Not Available	685	Open in IMG/M
3300028716\|Ga0307311_10017886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1741	Open in IMG/M
3300028718\|Ga0307307_10185855	Not Available	655	Open in IMG/M
3300028755\|Ga0307316_10017453	All Organisms → cellular organisms → Bacteria	2269	Open in IMG/M
3300028768\|Ga0307280_10024596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1759	Open in IMG/M
3300028768\|Ga0307280_10228294	Not Available	664	Open in IMG/M
3300028771\|Ga0307320_10151275	Not Available	898	Open in IMG/M
3300028778\|Ga0307288_10053247	Not Available	1398	Open in IMG/M
3300028778\|Ga0307288_10457687	Not Available	524	Open in IMG/M
3300028787\|Ga0307323_10276867	Not Available	604	Open in IMG/M
3300028793\|Ga0307299_10015729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2693	Open in IMG/M
3300028796\|Ga0307287_10344661	Not Available	562	Open in IMG/M
3300028807\|Ga0307305_10083854	All Organisms → cellular organisms → Bacteria → Proteobacteria	1473	Open in IMG/M
3300028811\|Ga0307292_10168375	Not Available	891	Open in IMG/M
3300028814\|Ga0307302_10250518	Not Available	867	Open in IMG/M
3300028819\|Ga0307296_10007278	All Organisms → cellular organisms → Bacteria	5793	Open in IMG/M
3300028872\|Ga0307314_10206685	Not Available	593	Open in IMG/M
3300028876\|Ga0307286_10333454	Not Available	563	Open in IMG/M
3300030829\|Ga0308203_1069981	Not Available	562	Open in IMG/M
3300030990\|Ga0308178_1067552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	703	Open in IMG/M
3300031058\|Ga0308189_10213326	Not Available	707	Open in IMG/M
3300031092\|Ga0308204_10130562	Not Available	726	Open in IMG/M
3300031092\|Ga0308204_10164514	Not Available	668	Open in IMG/M
3300031198\|Ga0307500_10146472	Not Available	671	Open in IMG/M
3300031226\|Ga0307497_10091283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1167	Open in IMG/M
3300031231\|Ga0170824_109365719	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300031231\|Ga0170824_128657147	Not Available	735	Open in IMG/M
3300031421\|Ga0308194_10315198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	546	Open in IMG/M
3300031716\|Ga0310813_10106679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2187	Open in IMG/M
3300031858\|Ga0310892_10347143	Not Available	951	Open in IMG/M
3300031946\|Ga0310910_10108303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2073	Open in IMG/M
3300032013\|Ga0310906_10524247	Not Available	805	Open in IMG/M
3300032043\|Ga0318556_10746201	Not Available	509	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.44%
Host-Associated	Host-Associated	20.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.16%
Plants	Host-Associated → Plants	20.56%
Aquatic	Environmental → Aquatic	10.28%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.28%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.35%
Sediment	Environmental → Aquatic → Sediment	7.48%
Freshwater	Environmental → Aquatic → Freshwater	2.80%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.48%
Loam	Environmental → Terrestrial → Soil → Loam	7.48%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.67%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.87%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.53%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.74%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.87%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.87%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	43.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.74%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.87%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001164	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005148	Soil and rhizosphere microbial communities from Laval, Canada - mgLMA	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019872	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a1	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_06185130	2170459005	Grass Soil	KSVCSRISGNRRADSFACKETSELDRLIQRNQSAGFTSGTQLYDYLRVHKCIGLTAGRARVYSTRGQYVCIYDPKDNKTSIYPCAWTRREMLSP
JGI11643J11755_117941972	3300000787	Soil	DRLLQRNRTGAFTSGAQLYAYLEAHKCIGLTAGRARVYANRGQYVCIYDPKDNKTKIYPCAWTRRDMLSQ*
JGI11823J13286_10038701	3300001164	Forest Soil	VRADSFACKETSELDRLLQRNQRGEFTSGVQLYDYLQSHKCIGLTAGRARVYANQGQYVCIYDPKDKNRTIKPCAWTRRDMLSK*
C688J18823_107745272	3300001686	Soil	FACKETSDLDRLLQINQRGGFTSGTQLYVYLQRHSCIGLTEGRARVYANKGQYVCIYDPKNKNKAIKPCAWTRSEMLLK*
Ga0063454_1021050842	3300004081	Soil	NQSGGFTSGTQLYDYLKAHKCMGLTAGRARVYSTRGQYVCIYDPKDNKTSIYPCAWTRTEMLSK*
Ga0062593_1030908121	3300004114	Soil	CKETSDLDRLLQINQRGGFTSGTQLYDYLKQHNCIGLTEGRARVYAIKGQYVCIYDRKNRNKALKPCAWTRRETLLK*
Ga0062589_1025951171	3300004156	Soil	SDLDRLLQINQRGGFTSGTQLYDYLKQHNCIGLTEGRARVYAIKGQYVCIYDRKNRNKALKPCAWTRRETLLK*
Ga0063356_1013674193	3300004463	Arabidopsis Thaliana Rhizosphere	ADVRVREDSFACKETSDLDRLLQINQRGGFTSGTQLYDYLKQHNCIGLTEGRARVYAIKGQYVCIYDRKNRNKALKPCAWTRRETLLK*
Ga0062592_1001922021	3300004480	Soil	LLQRNRTGAFTSGAQLYAYLEAHKCIGLTAGRARVYANRGQYVCIYDPKDNKTKIYPSAWTRRDMLSQ*
Ga0066819_10264791	3300005148	Soil	GRDADVRVREDSFACRETSELDRLLQRNQSGGFISGVQLYKYLQSHNCIGLSAGRVRVYAIQGQYVCIYDPKDKNKTIRPCAWTRRDMLSK*
Ga0066869_100824131	3300005165	Soil	ELDRLLQRNQSGGFISGVQLYKYLQSHNCIGLSAGRVRVYAIQGQYVCIYDPKDKNKTIRPCAWTRRDMLSK*
Ga0066869_101390311	3300005165	Soil	RADSFACKETSELDRLLQRNQSGGFTSGTQLYDYLKAHKCMGLTAGRARVYSTRGQYVCIYDPKDNKTSIYPCAWTRTEMLSK*
Ga0070676_107176372	3300005328	Miscanthus Rhizosphere	ACKDTSELDRLLQRNRTGGFTSGTQLYDYLRGHRCIGLSAGRARVYANRGQYVCIYDPKDNKTTIYPCAWTRRDMLSQ*
Ga0070711_1002120511	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	RDADVHVREDSFACKETSELDRLLQRNQSGGFTSGVQLYEYLQSHNCIGLSAGRVRVHATHGQYVCIYDPKGKTKTIKPCAWTRKDMLSK*
Ga0070708_1009576442	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	RETSELDRLLQRNQSGGFISGVQLYKYLQSHNCIGLSAGRVRVYAIQGQYVCIYDPKDKNKTIRPCAWTRRDMLSK*
Ga0070663_1006275421	3300005455	Corn Rhizosphere	ADVRVREDSFACQETSDLDRLLQINQRGGFSSGTQLYDYLRQHNCIGLTEGRARVYAIKGQYVCIYDRKNRNKAIKPCAWTRREMLLK*
Ga0070698_1007423262	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VREDSFACRETSELDRLLQRNQSGGFISGVQLYKYLQSHNCIGLSAGRVRVYAIQGQYVCIYDPKDKNKTIRPCAWTRRDMLSK*
Ga0070664_1005422831	3300005564	Corn Rhizosphere	KADVRVREDSFACQETSDLDRLLQINQRGGFSSGTQLYDYLRQHNCIGLTEGRARVYAIKGQYVCIYDRKNRNKAIKPCAWTRREMLLK*
Ga0068863_1021645913	3300005841	Switchgrass Rhizosphere	AVRADSFACKETSELDRLLQRNRSGGFTSGTQLYDYLKAHKCIGLTESRARVYSTQGQYVCIYDLKDNKTGIYPCAWTRTEMLSK*
Ga0068871_1023860771	3300006358	Miscanthus Rhizosphere	GCKERAELDRLLQRNQSGGFTSGTQLYDYLKAHKCVGLTAGRARGYSSQGQYVCIHDPENNKINIYPCAWTRAEMLSRVRHAGWPRPE*
Ga0068865_1010659422	3300006881	Miscanthus Rhizosphere	SDLDRLLQINQRGGFSSGTQLYDYLRQHNCIGLTEGRARVYAIKGQYVCIYDRKNRNKAIKPCAWTRREMLLK*
Ga0068865_1014911631	3300006881	Miscanthus Rhizosphere	VESDVTVRADSFACKETSELDRLLQRNQSGGFASGTQLYDYLRAHKCIGLTAGRARVYAAQGQYVCIYDPKNNKTIIYPCAWTRQEMLSQ*
Ga0075435_1017571812	3300007076	Populus Rhizosphere	ACQETSDLDRLLQINQRGGFSSGTQLYDYLRQHNCIGLTEGRARVYAIKGQYVCIYDRKNRNKAIKPCAWTRREMLLK*
Ga0111538_124749961	3300009156	Populus Rhizosphere	ADSFACKETSELDRLLQRNQRGGFTSGTQLYDYLKAHKCVGLTAGRARVYSTRGQYVCIYDPKDNKTSIYPCAWTRTEMLSK*
Ga0105242_106869841	3300009176	Miscanthus Rhizosphere	ADSFACKETSELDRLLQRNQSGGFTSGTQLYDYLKAHKCMGLTAGRARVYSTRGQYVCIYDPKDNKTSIYPCAWTRTEMLSK*
Ga0099796_102938391	3300010159	Vadose Zone Soil	ILLDRLLQINQRGGFTSGTQLYVYVQRHNCIGLTEGRARVYANKGQYVCIYDPKNKNKAIKPCAWTRREMLLK*
Ga0105239_105765393	3300010375	Corn Rhizosphere	LQINQRGGFTSGTQLYDYLRQHNCIGLTEGRARVYAIKGQYVCIYDPKNRNKAFKPCAWTRREMLLK*
Ga0134123_115088652	3300010403	Terrestrial Soil	CFQRNQSGGFTSRTQLYNYLKAHKCLGLTAGRARVYSIRGQYVCIYDPKDNKTSIYPCAWTRTEMLSK*
Ga0150985_1089228591	3300012212	Avena Fatua Rhizosphere	TVESEVHVRADSFACKETTELDRLLQRNRTGAFSSGTQLYDYLKAHNCIGLTEGFARVMRNQGQYVCIYDPKDKNRAIKPCAWTRTEMLLK*
Ga0150984_1088626991	3300012469	Avena Fatua Rhizosphere	SGGFTSGTQLYEYLKAHKCIGLTAGRARVYSIQGQYVCIYDAKDNKTNIYPCAWTRAEMLSK*
Ga0150984_1145179642	3300012469	Avena Fatua Rhizosphere	VCERIPACKEISDLDRLLQINQRGGFTSGTQLYVYLQRHNCIGLTEGRARVYANKGQYVCIYDPKNKNKAIKPCAWTRREMLLK*
Ga0164303_104454711	3300012957	Soil	ISELDRLLQINQRGGFTSGTQLYDYLQRHGCVGLTARRARVYANKEQYVCIYDLKDKNNAIKPCAWTRRDMLSK*
Ga0164302_117768681	3300012961	Soil	PRSAQHNKSGGFASGAQLYDYLKAHKCIGLTAGRARVYSTRGQYVCIYDPKDNKTSIYPCAWTRREMLSQ*
Ga0164309_107037111	3300012984	Soil	INQRGGFTSGTQLYDYWRQHNCIGLTEGRARVYAIKGQYVCIYDPKNRNKAIKPCAWTRREMLLK*
Ga0164308_101623031	3300012985	Soil	QIKADVRVREDSFACQETSDLDRLLQINQRGGFTSGTQLYDYLRQHNCIGLTEGRARVYAIKGQYVCIYDPKNRNKAIKPCAWTRREMLLK*
Ga0164308_122934872	3300012985	Soil	ESEVAVRADSFACKDTSELDRLLQRNQSGGFTSGIQLYDYLKAHKCIGLTAGRARVYSTGDQYVCIYDMKDNKTGIYPCAWTRREMLSQ*
Ga0157372_121029072	3300013307	Corn Rhizosphere	TVRADSFACKETSELDRLLQRNRTGAFTSGAQLYAYLEAHKCIGLTAGRARVYANRGQYVCIYDPKDNKTKIYPSAWTRRDMLSQ*
Ga0157377_112202242	3300014745	Miscanthus Rhizosphere	QSGGFTSGTQLYEYLKAHKCIGLTAGRARVYSIQGQYVCIYDSNDNKTNIYPCAWTRTEMLSK*
Ga0137418_101759461	3300015241	Vadose Zone Soil	DADVHVREDSFACKETSELDRLLQLNQNGGFTSGVQLYEYLQSHNCIGLSAGRVRVHATHGQYVCIYDPKGKDKTIKPCAWTRKDMLSRPSMTRW*
Ga0132255_1000370438	3300015374	Arabidopsis Rhizosphere	CQETSDLDRLLQINQRGGFSSGTQLYDYLRQHNCIGLTEGRARVYAIKGQYVCIYDRKNRNKAIKPCAWTRREMLLK*
Ga0182041_112489511	3300016294	Soil	DADVRVREDSFACRETSELDRLLQRNQSGGFISGVQLYKYLQSHNCIGLSAGRVRVYAIQGQYVCIYDPKDKNKTIRPCAWTRRDMLSK
Ga0184605_103223751	3300018027	Groundwater Sediment	FEIKADVRVREDSFACKEISELDRLLQINQRGGFISGTQLYDYLQRHSCVGLTAGRARVYANKGQYVCIYDLKDKNNAIKPCAWTRRDMLSK
Ga0184608_101764533	3300018028	Groundwater Sediment	EIKADVRVREDSFACKEISELDRLLQINQRGGFTSGTQLYDYLQRHSCVGLTAGRARVYANKGQYVCIYDLKDKNNAIRPCAWTRRDMLSK
Ga0184608_103219481	3300018028	Groundwater Sediment	VGSEVTVREDSFACKETSELDRLLQRNQRGEFTSGVQLYDYLQSHKCIGLTAGRARVYANQGQYVCIYDPKDKNRTIKPCAWTRRDMLSK
Ga0184608_103755852	3300018028	Groundwater Sediment	FACKEISELDRLLQINQRGGFTSGTQLYDYLQRQSCVGLTAGRARVYANKGQYVCIYDLKDKNIKPCAWTRRDMLSK
Ga0184621_100869573	3300018054	Groundwater Sediment	PYETSELDRLLQRNQRGEFTSGVQLYDYLQSHKCIGLTAGRARVYANQGQYVCIYDPKDKNRTIKPCAWTRRDTLSK
Ga0184616_103142501	3300018055	Groundwater Sediment	VTVRADSFACKETSELDRLLQRNQSGGFTSGTQLYDYLKAHKCIGLTAGRARVYSTQGQHVCIYEPENNKMSFYPCVWTRREMLSQ
Ga0184619_101725821	3300018061	Groundwater Sediment	LDRLIQRNQSAGFTSGTQLYDYLRVHKCVGLTAGRARVYSTRAQYVCIYDPKDNKTSIYPCAWTRREMLSP
Ga0184635_103236191	3300018072	Groundwater Sediment	SPALKVEAAVTVREDSFACKETSELDRLLQRNQRGEFTSGVQLYKYLQSHKCIGLTAGRSRVYANKGQYVCIYDPKDKNRTIKPCAWTRRDMLSK
Ga0190274_132072032	3300018476	Soil	QSGGFTSGTQPYDYLKAHKCIGLTAGRARVYSTRGQYVCIYDPKDNKAGIYPCAWTRTEMLSK
Ga0173481_100381355	3300019356	Soil	LLQRNRTGAFTSGAQLYAYLEAHKCIGLTAGRARVYANRGQYVCIYDPKDNKTKIYPSAWTRRDMLSQ
Ga0173481_105592631	3300019356	Soil	ADVRVREDSFACQETSDLDRLLQINQRGGFTSGTQLYDYLRQHNCIGLTEGRARVYAIKGQYVCIYDPKNRNKAFKPCAWTRREMLLK
Ga0193705_10814122	3300019869	Soil	FACKEISDLDRLLQINQRGGFTSGTQLYIYLQRHNCIGLTEGRARVYANKGQYVCIYDPKNKNKAIKPCAWTRREMLLK
Ga0193754_10323361	3300019872	Soil	FACKEISELDRLLQINQRGGFTSGTQLYDYLQRHSCVGLTAGRARVYANKGQYVCIYDLKDKNNAIEPCAWTRRDMLSK
Ga0193701_10902511	3300019875	Soil	LDRLIQRNQSAGFTSGTQLYDYLRVHKCIGLTAGRARVYSTRGQYVCIYDPKDNKTSIYPCAWTRREML
Ga0193703_10706401	3300019876	Soil	VREDSFACKEISDLDRLLQINQRGGFTSGTQLYVYLQRHNCIGLTEGPARVYANKGQYVCIYDPNKAIKPCAWTRREMLLK
Ga0193747_11565571	3300019885	Soil	LDRLIQRNQSAGFTSGTQLYDYLRVHKCVGLTAGRARVYSTRGQYVCIYDPKDNKTSIYP
Ga0193729_11613373	3300019887	Soil	VRVREDSFGCKEISELDRLLQINQRGGFTSGTQLYDYLQRHSCVGLTAGRARVYANKGQYVCIYDLKDKNNAIKPCAWTRRDMLSK
Ga0193729_12111472	3300019887	Soil	NFQIKADVRVREDSFACKEISDLDRLLQINQRGGFTSGTQLYVYLQRHNCIGLTEGRARVYANKGQYVCIYDPNKAIKPCAWTRREMLLK
Ga0193730_11186731	3300020002	Soil	LDRLIQRNQSAGFTSGTQLYDYLRVHKCVGLTAGRARVYSTRGQYVCIYDPKDNKTSIYPCAWTRREMLSP
Ga0210381_100381022	3300021078	Groundwater Sediment	VVTVRADSFACKETSELDRLIQRNQSAGFTSGTQLYDYLRVHKCIGLTAGRAHVYSTRGQYVCIYDPKDNKTSIYPCAWTRREMLSP
Ga0210381_101623273	3300021078	Groundwater Sediment	NFQIKADVRVREDSFACKETSDLDRLLQINQRGGFTSGTQLYDYLQRHNCVGLTEGRARVYANKGPYICIYDPKNRNKAIKPCAWTRREMLLK
Ga0210382_103579331	3300021080	Groundwater Sediment	RGDSFACKEISELDRLLQINQRGGFTSGTQLYDYLQRHSCVGLTAGRARVYANKGQYVCIYDLKDKNNAIKPCAWTRRDMLSK
Ga0193699_101403461	3300021363	Soil	KRVSELDRLLQRNQSGGFASGTQLYDYLKAHKCVGLTAGRARVYSTRGQYVCIYDPKDNKMSIYPCAWTRREMLSK
Ga0193695_11019251	3300021418	Soil	FEINADVHVREDSFACKETSDLDRLLQINQRGGFTSGTQLYDYLKRHNCIGLTEGRARVYANKGQYVCIYDPKNRNKAIKPCAWTRREMLLK
Ga0247802_11031231	3300023077	Soil	DVRVREDSFACQETSDLDRLLQINQRGGFSSGTQLYDYLRQHNCIGLTEGRARVYAIKGQYVCIYDRKNRNKAIKPCAWTRREMLLK
Ga0207704_108622892	3300025938	Miscanthus Rhizosphere	QETSDLDRLLQINQRGGFSSGTQLYDYLRQHNCIGLTEGRARVYAIKGQYVCIYDRKNRNKAIKPCAWTRREMLLK
Ga0207689_101553983	3300025942	Miscanthus Rhizosphere	VREDSFACQETSDLDRLLQINQRGGFSSGTQLYDYLRQHNCIGLTEGRARVYAIKGQYVCIYDRKNRNKAIKPCAWTRREMLLK
Ga0207703_114853881	3300026035	Switchgrass Rhizosphere	EMSELDRLLQRNQKGGFTSGTQLYDYLKAHKCIGLTESRARVYSTQGQYVCIYDLKDNKTGIYPCAWTRTEMLSK
Ga0207674_118770621	3300026116	Corn Rhizosphere	QSGGFASGTQLYDYLRAHKCIGLTAGRARVYAAQGQYVCIYDPKNNKTIIYPCAWTRQEMLSQ
Ga0208990_11955831	3300027663	Forest Soil	RNRTGAFSSGTQLYDYLKAHNCIGLTEGFARVMRNQGQYVCIYDPKDKNSTIKPCAWTRTEMLSQ
Ga0208989_102244691	3300027738	Forest Soil	KEISDLDRLLQINQRGGFTSGTQLYDYLQRHNCVGLTEGRARVYANKGQYVCIYDPKNRNKAIKPCAWTRREMLSK
Ga0307321_10699681	3300028704	Soil	VRVREDSFACKEISELDRLLQINQRGGFTSGTQLYDYLQRHSCVGLTAGRARVYANKGQYVCIYDLKDKNNAIKPCAWTRRDMLSK
Ga0307311_100178861	3300028716	Soil	EDSFACKEISELDRLLQINQRGGFTSGTQLYDYLQRHSCVGLTAGRARVYANKGQYVCIYDLKDKNNAIKPCAWTRRDMLSK
Ga0307307_101858552	3300028718	Soil	RKEISELDRLLQINQRGGFTSGTQLYDYLQRHSCVGLTAGRARVYANKGQYVCIYDLKDKNNAIRPCAWTRRDMLSK
Ga0307316_100174531	3300028755	Soil	TVREDSFACKETSELDRLLQRNQRGEFTSGVQLYDYLQSHKCIGLTAGRARVYANQGQYVCIYDPKDKNRTMPCAWTRRDMLSK
Ga0307280_100245961	3300028768	Soil	LQRNESGGFKSGTQLYDYLKAHKCIGLTAGRARVYSTRGQYVCIYDPKDNKTTIYPCAWTRIEMLSK
Ga0307280_102282942	3300028768	Soil	QINQRGGFTSGTQLYDYLKRHNCIGLTEGRARVYANKGQYVCIYDPKNRNKAIKPCAWTRRETLLK
Ga0307320_101512752	3300028771	Soil	LDRLIQRNQSAGFTSGTQLYDYLRVHKCVGLTAGRARVYSTRGQYVCIYDPKDNKTSIYPCAWTRREML
Ga0307288_100532471	3300028778	Soil	TSELDRLIQRNQSAGFTSGTQLYDYLRVHKCVGLTAGRARVYSTRGQYVCIYDPKDNKTSIYPCAWTRREMLSP
Ga0307288_104576872	3300028778	Soil	NADVHVREDSFACKETSDLDRLLQINQRGGFTSGTQLYDYLKRHNCIGLTEGRARVYANKGQYVCIYDPKNRNKAIKPCAWTRRETLLK
Ga0307323_102768672	3300028787	Soil	SFACKERAELDRLLQRNQSGGFTSGTQLYDYLKAHKCVGLTAGRARVYSSQGQYVCIHDPKNNKINIYPCAWTRAEMLSKSP
Ga0307290_102557322	3300028791	Soil	NQSGGFTSGTQLYDYLKAHKCIGLTAGRARVYSTQGQYVCIYEPKNNKMSFYPCAWTRREMLSQ
Ga0307299_100157294	3300028793	Soil	QINQRGGFTSGTQLYDYLQRHSCVGLTAGRARVYANKGQYVCIYDLKDKNNAIRPCAWTRRDMLSK
Ga0307287_103446611	3300028796	Soil	DRLLQINQRGGFTSGTQLYVYLQRHSCIGLTEGRARVYAIKGQYVCIYDPKNTKKAIKPCAWTRSEMLLK
Ga0307305_100838541	3300028807	Soil	VTVRADSFACKETSELDRLLQRNRSGAFTSGIQLYNYLKAHKCIGLTAGRARVYANRGQYVCIYDPKNNKTTIYPCAWTRRDMLSQ
Ga0307292_101683751	3300028811	Soil	LDRLIQRNQSAGFTSGTQLYDYLRVHKCIGLTAGRARVYSTRGQYVCIYDPKDNKTSIYPCAWTRREMLS
Ga0307302_102505181	3300028814	Soil	DSFACKETSDLDRLLQINQRGGFTSGTQLYDYLQRHNCVGLTEGRARVYANKGPYICIYDPKNRNKAIKPCAWTRREMLLK
Ga0307296_100072781	3300028819	Soil	QINQRGGFTSGTQLYDYLQRHSCVGLTAGRARVYANKGQYVCIYDLKDKNNAIKPCAWTRRDMLSK
Ga0307314_102066852	3300028872	Soil	SELDRLLQRNRTGIFTSGTQLYDYLKAHKCIGLTAGRAKVYANRGQYVCIYDPKDNKTTIYPCAWTRRDMLSQ
Ga0307286_103334542	3300028876	Soil	QINADVRVREDSFACKETSDLDRLLQINQRGGFTSGTQLYVYLQRHSCIGLTEGRARVYAIKGQYVCIYDPKNTKKAIKPCAWTRSEMLLK
Ga0307308_101147831	3300028884	Soil	RGGFTSGTQLYDYLQRHSCVGLTAGRARVYANKGQYVCIYDLKDKNNAIRPCAWTRRDMLSK
Ga0308203_10699811	3300030829	Soil	CKEISDLDRLLQINQRGGFTSGTQLYVYLQRHNCIGLTEGRARVYANKGQYVCIYDPKNKNKAIKPCAWTRREMLLK
Ga0308178_10675522	3300030990	Soil	LLERNRTGGFASGTQLYDYLRGHRCIGLSAGRARVYANRGQYVCIYDPKDNKTSIYPCAWTRREMLSP
Ga0308189_102133261	3300031058	Soil	LDRLIQRNQSAGFTSGTQLYDYLKAHKCIGLTAGRARVYSTRGQYVCIYDTKDNKTSIYP
Ga0308204_101305621	3300031092	Soil	ELDRLLQRNQSGGFTSGTQLYDYLKAHKCVGLTAGRARVYSTRGQYVCIYDSKDNKTNIYPCAWTRTEMLSK
Ga0308204_101645141	3300031092	Soil	LDRLIQRNQSAGFTSGTQLYDYLKAHKCIGLTAGRARVYSTRGQYVCIYDPKDNKTSIYPCAWTRREMLSP
Ga0307500_101464722	3300031198	Soil	SLTSKLKRTYVCERIPACKEISDLDRLLQINQRGGFTSGTQLYVYLQRHNCIGLTEGRARVYANKGQYVCIYDPKNKNKAIKPCAWTRREMLLK
Ga0307497_100912831	3300031226	Soil	ASGRALPDRFTSGTQLYVYLQRHNCIGLTEGRARVYANKGQYVCIYDPKNKNKAIKPCAWTRRGMLLK
Ga0170824_1093657191	3300031231	Forest Soil	PDVRVREDSFACKEILLDRLLQINQRGGFTSGTHLYVQRHNCIGLTEGRARVYANKGQYVCIYDPKNKNKAIKPCAWTRREMLLK
Ga0170824_1286571471	3300031231	Forest Soil	LDRLLQRNQSGGFTSGTQLYDYLKAHKCVGLTDDPKDNKINIYPCAWTRTEMLSKSP
Ga0308194_103151981	3300031421	Soil	RDADVHVREDSFACKETSELDRLLQRNQSGGFTSGVQLYEYLQSHNCIGLSAGRVRVHATHGQYVCIYDPKGKNKTIKPCAWTRKDMLSK
Ga0310813_101066794	3300031716	Soil	FACQETSDLDRLLQINQRGGFSSGTQLYDYLRQHNCIGLTEGRARVYAIKGQYVCIYDRKNRNKAIKPCAWTRREMLLK
Ga0310892_103471431	3300031858	Soil	NHRGGFSSGTQLYDYLRQHNCIGLTEGRARVYAIKGQYVCIYDRKNRNKAIKPCAWTRREMLLK
Ga0310910_101083035	3300031946	Soil	DADVHVREDSFACKETSELDRLLQRNQSGGFTSGVQLYEYLQSHTCIGLSAGRVRVYATHGQYVCIYDPKGKNKPIKPCAWTRKDMLSK
Ga0310906_105242471	3300032013	Soil	VREDSFACKETSDLDRLLQINQRGGFSSGTQLYDYLRQHNCIGLTEGRARVYAIKGQYVCIYDRKNRNKAIKPCAWTRREMLLK
Ga0318556_107462012	3300032043	Soil	GRDADVHVREDSFACKETSELDRLLQRNQSGGFTSGVQLYEYLQSHTCIGLSAGRVRVYATHGQYVCIYDPKGKNKPIKPCAWTRKDMLSK

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092124

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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