Metagenome / Metatranscriptome Family F092100

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092100
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	45 residues
Representative Sequence	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADS
Number of Associated Samples	93
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	67.29 %
% of genes from short scaffolds (< 2000 bps)	69.16 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.879 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (26.168 % of family members)
Environment Ontology (ENVO)	Unclassified (58.879 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (95.327 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 6.52% β-sheet: 0.00% Coil/Unstructured: 93.48%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF08299	Bac_DnaA_C	40.19
PF11638	DnaA_N	16.82
PF00712	DNA_pol3_beta	9.35
PF02767	DNA_pol3_beta_2	9.35
PF01649	Ribosomal_S20p	4.67
PF03109	ABC1	3.74
PF02768	DNA_pol3_beta_3	3.74
PF13476	AAA_23	2.80
PF06831	H2TH	1.87
PF02954	HTH_8	1.87
PF01751	Toprim	0.93
PF02463	SMC_N	0.93
PF04127	DFP	0.93
PF01475	FUR	0.93
PF02518	HATPase_c	0.93
PF00899	ThiF	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	40.19
COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	Replication, recombination and repair [L]	22.43
COG0268	Ribosomal protein S20	Translation, ribosomal structure and biogenesis [J]	4.67
COG0661	Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family	Signal transduction mechanisms [T]	3.74
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	1.87
COG0452	Phosphopantothenoylcysteine synthetase/decarboxylase CoaBC	Coenzyme transport and metabolism [H]	0.93
COG0735	Fe2+ or Zn2+ uptake regulation protein Fur/Zur	Inorganic ion transport and metabolism [P]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.88 %
Unclassified	root	N/A	41.12 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.88 %
Unclassified	root	N/A	41.12 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.88 %
Unclassified	root	N/A	41.12 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	58.88 %
Unclassified	root	N/A	41.12 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	58.88 %
Unclassified	root	N/A	41.12 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis	42.99 %
Unclassified	root	N/A	41.12 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	13.08 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.93 %

Name	Rank	Taxonomy	Distribution
SAR116 cluster	clade	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster	42.99 %
Unclassified	root	N/A	41.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.08 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Puniceispirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum	42.99 %
Unclassified	root	N/A	41.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.08 %
Marinovum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marinovum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.12 %
Candidatus Puniceispirillum marinum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	33.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.08 %
unclassified Marinovum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marinovum → unclassified Marinovum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.12 %
Candidatus Puniceispirillum marinum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	33.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.08 %
Marinovum sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marinovum → unclassified Marinovum → Marinovum sp.	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000117\|DelMOWin2010_c10026519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	2902	Open in IMG/M
3300000265\|LP_A_09_P04_10DRAFT_1047238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	652	Open in IMG/M
3300001347\|JGI20156J14371_10005212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	9105	Open in IMG/M
3300001347\|JGI20156J14371_10143238	Not Available	679	Open in IMG/M
3300001349\|JGI20160J14292_10023638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	3377	Open in IMG/M
3300001352\|JGI20157J14317_10178168	Not Available	628	Open in IMG/M
3300001355\|JGI20158J14315_10194079	Not Available	584	Open in IMG/M
3300003345\|JGI26080J50196_1003809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	5660	Open in IMG/M
3300003345\|JGI26080J50196_1003932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	5543	Open in IMG/M
3300003427\|JGI26084J50262_1002662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	9162	Open in IMG/M
3300003427\|JGI26084J50262_1004893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	6177	Open in IMG/M
3300003620\|JGI26273J51734_10196195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum	509	Open in IMG/M
3300004279\|Ga0066605_10021479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	3203	Open in IMG/M
3300004279\|Ga0066605_10207394	Not Available	749	Open in IMG/M
3300004279\|Ga0066605_10236475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	688	Open in IMG/M
3300005837\|Ga0078893_10354935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum	1081	Open in IMG/M
3300006026\|Ga0075478_10005281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	4506	Open in IMG/M
3300006027\|Ga0075462_10011046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	2916	Open in IMG/M
3300006402\|Ga0075511_1043653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum	1599	Open in IMG/M
3300006425\|Ga0075486_1816555	Not Available	560	Open in IMG/M
3300006637\|Ga0075461_10070143	Not Available	1121	Open in IMG/M
3300006874\|Ga0075475_10013636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	4063	Open in IMG/M
3300007234\|Ga0075460_10041698	Not Available	1748	Open in IMG/M
3300007234\|Ga0075460_10129581	Not Available	890	Open in IMG/M
3300007623\|Ga0102948_1000029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	51080	Open in IMG/M
3300007992\|Ga0105748_10218545	Not Available	795	Open in IMG/M
3300009071\|Ga0115566_10002779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	14327	Open in IMG/M
3300009142\|Ga0102885_1042200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1084	Open in IMG/M
3300009172\|Ga0114995_10169282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum	1217	Open in IMG/M
3300009193\|Ga0115551_1452706	Not Available	549	Open in IMG/M
3300009426\|Ga0115547_1076157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum	1134	Open in IMG/M
3300009437\|Ga0115556_1010037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	5198	Open in IMG/M
3300009440\|Ga0115561_1120968	Not Available	1053	Open in IMG/M
3300009442\|Ga0115563_1220462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum	719	Open in IMG/M
3300009443\|Ga0115557_1211356	Not Available	756	Open in IMG/M
3300009445\|Ga0115553_1367659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum	549	Open in IMG/M
3300009467\|Ga0115565_10016457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	4031	Open in IMG/M
3300009476\|Ga0115555_1193594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum	840	Open in IMG/M
3300009495\|Ga0115571_1259820	Not Available	696	Open in IMG/M
3300009498\|Ga0115568_10161179	Not Available	1060	Open in IMG/M
3300009505\|Ga0115564_10351503	Not Available	728	Open in IMG/M
3300009505\|Ga0115564_10391787	Not Available	680	Open in IMG/M
3300009505\|Ga0115564_10397948	Not Available	673	Open in IMG/M
3300010299\|Ga0129342_1316995	Not Available	534	Open in IMG/M
3300012969\|Ga0129332_1484910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1088	Open in IMG/M
3300013010\|Ga0129327_10562767	Not Available	625	Open in IMG/M
3300017818\|Ga0181565_10386731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	925	Open in IMG/M
3300017818\|Ga0181565_10885148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	557	Open in IMG/M
3300017824\|Ga0181552_10129633	Not Available	1365	Open in IMG/M
3300017949\|Ga0181584_10062715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	2599	Open in IMG/M
3300017950\|Ga0181607_10282289	Not Available	940	Open in IMG/M
3300017950\|Ga0181607_10571566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	597	Open in IMG/M
3300017950\|Ga0181607_10651239	Not Available	550	Open in IMG/M
3300017952\|Ga0181583_10280232	Not Available	1066	Open in IMG/M
3300017957\|Ga0181571_10497369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	746	Open in IMG/M
3300017958\|Ga0181582_10554794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	708	Open in IMG/M
3300017968\|Ga0181587_10072324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	2512	Open in IMG/M
3300017968\|Ga0181587_10175098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1499	Open in IMG/M
3300018036\|Ga0181600_10182514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	1136	Open in IMG/M
3300018036\|Ga0181600_10538752	Not Available	550	Open in IMG/M
3300018039\|Ga0181579_10303170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	893	Open in IMG/M
3300018417\|Ga0181558_10038531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	3330	Open in IMG/M
3300019283\|Ga0182058_1327762	Not Available	1711	Open in IMG/M
3300019751\|Ga0194029_1007460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	1510	Open in IMG/M
3300019756\|Ga0194023_1008857	Not Available	2016	Open in IMG/M
3300019765\|Ga0194024_1011452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	1856	Open in IMG/M
3300020052\|Ga0181554_1057452	Not Available	2057	Open in IMG/M
3300020166\|Ga0206128_1068961	Not Available	1634	Open in IMG/M
3300020174\|Ga0181603_10160152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	967	Open in IMG/M
3300020175\|Ga0206124_10006119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	7729	Open in IMG/M
3300020404\|Ga0211659_10351813	Not Available	643	Open in IMG/M
3300020469\|Ga0211577_10005986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	10448	Open in IMG/M
3300021085\|Ga0206677_10310138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	627	Open in IMG/M
3300021185\|Ga0206682_10362695	Not Available	619	Open in IMG/M
3300021323\|Ga0210295_1185260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	705	Open in IMG/M
3300021957\|Ga0222717_10091113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1915	Open in IMG/M
3300021959\|Ga0222716_10085535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	2156	Open in IMG/M
3300022900\|Ga0255771_1031038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	3295	Open in IMG/M
3300022905\|Ga0255756_1001940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	22763	Open in IMG/M
3300022909\|Ga0255755_1076975	Not Available	1526	Open in IMG/M
3300022926\|Ga0255753_1288976	Not Available	640	Open in IMG/M
3300022928\|Ga0255758_10032430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	3273	Open in IMG/M
3300022929\|Ga0255752_10036954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	3239	Open in IMG/M
3300023172\|Ga0255766_10329749	Not Available	765	Open in IMG/M
3300023273\|Ga0255763_1347713	Not Available	508	Open in IMG/M
3300023706\|Ga0232123_1014319	Not Available	1710	Open in IMG/M
3300024293\|Ga0228651_1103726	Not Available	644	Open in IMG/M
(restricted) 3300024324\|Ga0233443_1315565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300024335\|Ga0228672_1150391	Not Available	604	Open in IMG/M
3300025594\|Ga0209094_1110383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	615	Open in IMG/M
3300025610\|Ga0208149_1081423	Not Available	797	Open in IMG/M
3300025630\|Ga0208004_1145678	Not Available	516	Open in IMG/M
3300025636\|Ga0209136_1044988	Not Available	1524	Open in IMG/M
3300025653\|Ga0208428_1020382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2190	Open in IMG/M
3300025700\|Ga0209661_1237500	Not Available	511	Open in IMG/M
3300025701\|Ga0209771_1029320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2211	Open in IMG/M
3300025704\|Ga0209602_1146510	Not Available	764	Open in IMG/M
3300025712\|Ga0209305_1194140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum	598	Open in IMG/M
3300025751\|Ga0208150_1026719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marinovum → unclassified Marinovum → Marinovum sp.	2023	Open in IMG/M
3300025860\|Ga0209119_1073246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum	1609	Open in IMG/M
3300025869\|Ga0209308_10006012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	9157	Open in IMG/M
3300025881\|Ga0209309_10002035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	19047	Open in IMG/M
3300025881\|Ga0209309_10002076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	18815	Open in IMG/M
3300026426\|Ga0247570_1043463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	960	Open in IMG/M
3300026460\|Ga0247604_1081500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	751	Open in IMG/M
3300027612\|Ga0209037_1140921	Not Available	584	Open in IMG/M
3300028672\|Ga0257128_1019259	Not Available	1443	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	96.26%
Freshwater	Environmental → Aquatic → Freshwater	2.80%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.93%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	38.32%
Pelagic	Environmental → Aquatic → Marine → Pelagic	21.50%
Coastal	Environmental → Aquatic → Marine → Coastal	19.63%
Unclassified	Environmental → Aquatic → Marine → Unclassified	6.54%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	6.54%
River	Environmental → Aquatic → Freshwater → River	2.80%
Oceanic	Environmental → Aquatic → Marine → Oceanic	2.80%
Inlet	Environmental → Aquatic → Marine → Inlet	0.93%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.93%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	26.17%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	21.50%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	19.63%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	10.28%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	6.54%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	6.54%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	1.87%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.87%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	0.93%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	26.17%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	19.63%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	12.15%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	8.41%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	5.61%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	4.67%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	3.74%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	2.80%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.87%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.87%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.87%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.87%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.87%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	1.87%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	0.93%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.93%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.93%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.93%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.93%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300000265	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10	Environmental	Open in IMG/M
3300001347	Pelagic Microbial community sample from North Sea - COGITO 998_met_06	Environmental	Open in IMG/M
3300001349	Pelagic Microbial community sample from North Sea - COGITO 998_met_10	Environmental	Open in IMG/M
3300001352	Pelagic Microbial community sample from North Sea - COGITO 998_met_07	Environmental	Open in IMG/M
3300001355	Pelagic Microbial community sample from North Sea - COGITO 998_met_08	Environmental	Open in IMG/M
3300003345	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA	Environmental	Open in IMG/M
3300003427	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA	Environmental	Open in IMG/M
3300003620	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA	Environmental	Open in IMG/M
3300004279	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300006026	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA	Environmental	Open in IMG/M
3300006027	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA	Environmental	Open in IMG/M
3300006402	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006425	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006637	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA	Environmental	Open in IMG/M
3300006874	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA	Environmental	Open in IMG/M
3300007234	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA	Environmental	Open in IMG/M
3300007623	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG	Environmental	Open in IMG/M
3300007992	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um	Environmental	Open in IMG/M
3300009071	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405	Environmental	Open in IMG/M
3300009142	Estuarine microbial communities from the Columbia River estuary - metaG 1550B-3	Environmental	Open in IMG/M
3300009172	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154	Environmental	Open in IMG/M
3300009193	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321	Environmental	Open in IMG/M
3300009426	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420	Environmental	Open in IMG/M
3300009437	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414	Environmental	Open in IMG/M
3300009440	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512	Environmental	Open in IMG/M
3300009442	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519	Environmental	Open in IMG/M
3300009443	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421	Environmental	Open in IMG/M
3300009445	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331	Environmental	Open in IMG/M
3300009467	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530	Environmental	Open in IMG/M
3300009476	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407	Environmental	Open in IMG/M
3300009495	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531	Environmental	Open in IMG/M
3300009498	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426	Environmental	Open in IMG/M
3300009505	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523	Environmental	Open in IMG/M
3300010299	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA	Environmental	Open in IMG/M
3300012969	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013010	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA	Environmental	Open in IMG/M
3300017818	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017824	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017950	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)	Environmental	Open in IMG/M
3300017952	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017957	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017958	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017968	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018036	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)	Environmental	Open in IMG/M
3300018039	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018417	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019283	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101404CT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019751	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG	Environmental	Open in IMG/M
3300019756	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG	Environmental	Open in IMG/M
3300019765	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG	Environmental	Open in IMG/M
3300020052	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011503CT metaG (spades assembly)	Environmental	Open in IMG/M
3300020166	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1	Environmental	Open in IMG/M
3300020174	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041409US metaG (spades assembly)	Environmental	Open in IMG/M
3300020175	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2	Environmental	Open in IMG/M
3300020404	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)	Environmental	Open in IMG/M
3300020469	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)	Environmental	Open in IMG/M
3300021085	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015	Environmental	Open in IMG/M
3300021185	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015	Environmental	Open in IMG/M
3300021323	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R9.63AS (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300022900	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG	Environmental	Open in IMG/M
3300022905	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011509CT metaG	Environmental	Open in IMG/M
3300022909	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG	Environmental	Open in IMG/M
3300022926	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG	Environmental	Open in IMG/M
3300022928	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG	Environmental	Open in IMG/M
3300022929	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG	Environmental	Open in IMG/M
3300023172	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG	Environmental	Open in IMG/M
3300023273	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG	Environmental	Open in IMG/M
3300023706	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024293	Seawater microbial communities from Monterey Bay, California, United States - 63D	Environmental	Open in IMG/M
3300024324 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_200_MG	Environmental	Open in IMG/M
3300024335	Seawater microbial communities from Monterey Bay, California, United States - 90D	Environmental	Open in IMG/M
3300025594	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes)	Environmental	Open in IMG/M
3300025610	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025630	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025636	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes)	Environmental	Open in IMG/M
3300025653	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025700	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_120m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025701	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)	Environmental	Open in IMG/M
3300025704	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes)	Environmental	Open in IMG/M
3300025712	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321 (SPAdes)	Environmental	Open in IMG/M
3300025751	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025860	Pelagic Microbial community sample from North Sea - COGITO 998_met_03 (SPAdes)	Environmental	Open in IMG/M
3300025869	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes)	Environmental	Open in IMG/M
3300025881	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)	Environmental	Open in IMG/M
3300026426	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 23R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300026460	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 85R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027612	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_DNA (SPAdes)	Environmental	Open in IMG/M
3300028672	Metatranscriptome of marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOWin2010_100265192	3300000117	Marine	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHSAAPDSAMKKADF*
LP_A_09_P04_10DRAFT_10472382	3300000265	Marine	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGP
JGI20156J14371_100052122	3300001347	Pelagic Marine	MPVSYQSTLSTKYSMRLTNKHQNIEFLPIRARHGAKPDSSKKKAES*
JGI20156J14371_101432382	3300001347	Pelagic Marine	TLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSALKKADS*
JGI20160J14292_100236384	3300001349	Pelagic Marine	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPD
JGI20157J14317_101781681	3300001352	Pelagic Marine	SGQSTLSTKYSMRLTNKHQNIEFLPIRAQHGAAPDSAMKKADS*
JGI20158J14315_101940791	3300001355	Pelagic Marine	STLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSALKKADS*
JGI26080J50196_10038094	3300003345	Marine	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF*
JGI26080J50196_10039321	3300003345	Marine	SGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSALKKADS*
JGI26084J50262_10026621	3300003427	Marine	VSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSALKKADS*
JGI26084J50262_10048938	3300003427	Marine	VSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF*
JGI26273J51734_101961952	3300003620	Marine	MPVSGXSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKAES*
Ga0066605_100214795	3300004279	Marine	RIFTMPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF*
Ga0066605_102073941	3300004279	Marine	RIFTMPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSALKKADS*
Ga0066605_102364751	3300004279	Marine	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMK
Ga0078893_103549352	3300005837	Marine Surface Water	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAELDSAMKKADF*
Ga0075478_100052812	3300006026	Aqueous	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDLAMKKADF*
Ga0075462_100110464	3300006027	Aqueous	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAEPDSAMKKADF*
Ga0075511_10436532	3300006402	Aqueous	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAVKKAES*
Ga0075486_18165552	3300006425	Aqueous	TINGQFHQLSLLLGQLSYFTMPVSYQSTLSTKYSMRLTNKHQNIEFLPIRARHGAKPDSSKKKAES*
Ga0075461_100701431	3300006637	Aqueous	STKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF*
Ga0075475_100136367	3300006874	Aqueous	TLSTKYSMRLTNKHQNIEFLPIRARHGAKSDSAMKKAES*
Ga0075460_100416981	3300007234	Aqueous	GQSTLSTKYSMRLTNKHQNIEFLPIRARHGAKPDSSKKKAES*
Ga0075460_101295811	3300007234	Aqueous	STKYSMRLTNKHQNIEFLPIRARHSAAPDSAMKKADF*
Ga0102948_10000291	3300007623	Water	TLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF*
Ga0105748_102185452	3300007992	Estuary Water	MPASGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKVES*
Ga0115566_1000277918	3300009071	Pelagic Marine	PVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSALKKADS*
Ga0102885_10422002	3300009142	Estuarine	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRAQHGAGPDSALKKADS*
Ga0114995_101692822	3300009172	Marine	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAKLDSAMKKAES*
Ga0115551_14527061	3300009193	Pelagic Marine	VPSQSTLSTKYSMRLTNKHQNIEFLPIRARHRAKRDSVMENADS*
Ga0115547_10761572	3300009426	Pelagic Marine	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRAQHGAAPDSAMKKADF*
Ga0115556_10100372	3300009437	Pelagic Marine	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAKPDSSKKKAES*
Ga0115561_11209681	3300009440	Pelagic Marine	LSLLLGQLSYFTMPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAKPDSSKKKAES*
Ga0115563_12204622	3300009442	Pelagic Marine	MPVPGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF*
Ga0115557_12113562	3300009443	Pelagic Marine	CRIFTMPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSALKKADS*
Ga0115553_13676592	3300009445	Pelagic Marine	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRAQHGAAPDSAMKKADS*
Ga0115565_100164576	3300009467	Pelagic Marine	STKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADS*
Ga0115555_11935942	3300009476	Pelagic Marine	MVSFISFLFFQGSCHIFTMPVSTQSTLYTKYSMRLTNKHQNIEFLPIRARHGAKPDSSKKKAES*
Ga0115571_12598201	3300009495	Pelagic Marine	YSMRLTNKHQNIEFLPIRARHGAAPDSAMKKAES*
Ga0115568_101611792	3300009498	Pelagic Marine	TMPVSYQSTLSTKYSMRLTNKHQNIEFLPIRARHGAKPDSSKKKAES*
Ga0115564_103515031	3300009505	Pelagic Marine	IFTMPVSGQSTLSTKYSMRLTNKHQNIEFLPIRAQHGAAPDSAMKKADS*
Ga0115564_103917872	3300009505	Pelagic Marine	QSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF*
Ga0115564_103979482	3300009505	Pelagic Marine	QSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADS*
Ga0129342_13169952	3300010299	Freshwater To Marine Saline Gradient	HQLSLLLGQLSYFTMPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAKSDSAMKKAES
Ga0129332_14849101	3300012969	Aqueous	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHSAAPDSAMKK
Ga0129327_105627672	3300013010	Freshwater To Marine Saline Gradient	CRIFTMPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF*
Ga0181565_103867312	3300017818	Salt Marsh	MPASGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF
Ga0181565_108851482	3300017818	Salt Marsh	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKAKS
Ga0181552_101296332	3300017824	Salt Marsh	SGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKAKS
Ga0181584_100627152	3300017949	Salt Marsh	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF
Ga0181607_102822892	3300017950	Salt Marsh	FTMPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF
Ga0181607_105715661	3300017950	Salt Marsh	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGA
Ga0181607_106512392	3300017950	Salt Marsh	PVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSALKKADS
Ga0181583_102802321	3300017952	Salt Marsh	STKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF
Ga0181571_104973692	3300017957	Salt Marsh	MPASGQSTLSTKYSMKLTNKHQNIEFLPIRARHGAAPDSAMKKADF
Ga0181582_105547942	3300017958	Salt Marsh	MPASGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAADSAMKKAKS
Ga0181587_100723243	3300017968	Salt Marsh	SGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF
Ga0181587_101750981	3300017968	Salt Marsh	MPASGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKA
Ga0181600_101825142	3300018036	Salt Marsh	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRAQHGAGPDSALKKADS
Ga0181600_105387522	3300018036	Salt Marsh	TKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKAKS
Ga0181579_103031701	3300018039	Salt Marsh	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKA
Ga0181558_100385316	3300018417	Salt Marsh	MPVSGQSTLSTKYSMKLTNKHQNIEFLPIRARYGAAPDSAMKKAES
Ga0182058_13277621	3300019283	Salt Marsh	IVTMPLNGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF
Ga0194029_10074602	3300019751	Freshwater	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAKPDSSKKKAES
Ga0194023_10088572	3300019756	Freshwater	MPVSYQSTLSTKYSMRLTNKHQNIEFLPIRARHSAAPDSAMKKADF
Ga0194024_10114522	3300019765	Freshwater	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHSAAPDSAMKKADF
Ga0181554_10574521	3300020052	Salt Marsh	VSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKAKS
Ga0206128_10689611	3300020166	Seawater	GLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF
Ga0181603_101601521	3300020174	Salt Marsh	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAEPDSA
Ga0206124_100061192	3300020175	Seawater	MPVSYQSTLSTKYSMRLTNKHQNIEFLPIRARHGAKPDSSKKKAES
Ga0211659_103518131	3300020404	Marine	FFWGGCRIFTMPVSSQPTLSTKYSMRLTNKHQNIEFLPIRDQYGVKPDSALKKAGS
Ga0211577_100059864	3300020469	Marine	MPVSGQSTLYTKYSMRLTNKHQNIEFLPIHARHGVKLDSAMKKAAS
Ga0206677_103101382	3300021085	Seawater	MPVFGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAELDSAMKKADF
Ga0206682_103626952	3300021185	Seawater	LLLGQLSYFTMPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAELDSAMKKADF
Ga0210295_11852602	3300021323	Estuarine	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKAES
Ga0222717_100911133	3300021957	Estuarine Water	RIFTMPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSALKKADS
Ga0222716_100855352	3300021959	Estuarine Water	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSAMKKADF
Ga0255771_10310386	3300022900	Salt Marsh	LLLGQLSYFTMPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARYGAAPDSAMKKAES
Ga0255756_10019401	3300022905	Salt Marsh	VSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF
Ga0255755_10769752	3300022909	Salt Marsh	KYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKAKS
Ga0255753_12889762	3300022926	Salt Marsh	CRIFTMPASGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF
Ga0255758_100324301	3300022928	Salt Marsh	VSGQSTLSTKYSMRLTNKHQNIEFLPIRARYGAAPDSAMKKAES
Ga0255752_100369541	3300022929	Salt Marsh	STLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKAKS
Ga0255766_103297491	3300023172	Salt Marsh	TLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF
Ga0255763_13477132	3300023273	Salt Marsh	TLSTKYSMRLTNKHQNIEFLPIRARHGAAPDAAMKKADF
Ga0232123_10143192	3300023706	Salt Marsh	GQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF
Ga0228651_11037262	3300024293	Seawater	MPVSGQSTLPTKYSMRLTNKHQNIEFLPIRARYGAAPDSATKKAES
(restricted) Ga0233443_13155652	3300024324	Seawater	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSALKKLMLSQ
Ga0228672_11503911	3300024335	Seawater	SCRIFTMPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSALKKADS
Ga0209094_11103831	3300025594	Pelagic Marine	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSALKKA
Ga0208149_10814231	3300025610	Aqueous	MPASGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDLAMKKADF
Ga0208004_11456782	3300025630	Aqueous	YQSTLSTKYSMRLTNKHQNIEFLPIRARHGAKPDSSKKKAES
Ga0209136_10449882	3300025636	Marine	IFTMPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF
Ga0208428_10203821	3300025653	Aqueous	VSYQSTLSTKYSMRLTNKHQNIEFLPICARHGAKPDSSTKKAES
Ga0209661_12375002	3300025700	Marine	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSALKKADS
Ga0209771_10293204	3300025701	Marine	GSCRIFTMPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSALKKADS
Ga0209602_11465102	3300025704	Pelagic Marine	PVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF
Ga0209305_11941402	3300025712	Pelagic Marine	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADS
Ga0208150_10267191	3300025751	Aqueous	YQSTLSTKYSMRLTNKHQNIEFLPICARHGAKPDSSTKKAES
Ga0209119_10732461	3300025860	Pelagic Marine	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSA
Ga0209308_1000601212	3300025869	Pelagic Marine	SGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSALKKADS
Ga0209309_100020358	3300025881	Pelagic Marine	MPVSGQSTLSTKYSMRLTNKHQNIEFLPIRAQHGAAPDSAMKKADF
Ga0209309_1000207621	3300025881	Pelagic Marine	CRIFTMPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAGPDSALKKADS
Ga0247570_10434631	3300026426	Seawater	MPVSGQSTLPTKYSMRLTNKHQNIEFLPIRTRHGAGPD
Ga0247604_10815001	3300026460	Seawater	MPVSGQSTLPTKYSMGLTNKHQNIEYLPIRARHGAEPDSAIKKVDF
Ga0209037_11409212	3300027612	Marine	SCRIFTMPVSGQSTLSTKYSMRLTNKHQNIEFLPIRARHGAAPDSAMKKADF
Ga0257128_10192592	3300028672	Marine	TKYSMRLTNKHQNIEFLPIHARHGAKPDSAMKKADS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters