Metagenome / Metatranscriptome Family F092012

Overview

Basic Information

• Family ID: F092012
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 107
• Average Sequence Length: 44 residues
• Representative Sequence: MPRLRTIAIAAVVVVVTDVTWDGTSLHISFGWPGRKPLASFVFP
• Number of Associated Samples: 86
• Number of Associated Scaffolds: 107

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 48.60 %
• % of genes near scaffold ends (potentially truncated): 23.36 %
• % of genes from short scaffolds (< 2000 bps): 89.72 %
• Associated GOLD sequencing projects: 79
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (58.879 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.888 % of family members)
• Environment Ontology (ENVO): Unclassified (25.234 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (45.794 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 18.06%
  β-sheet: 20.83%
  Coil/Unstructured: 61.11%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01042	Ribonuc_L-PSP	5.61
PF10988	DUF2807	3.74
PF00196	GerE	2.80
PF04828	GFA	2.80
PF00768	Peptidase_S11	2.80
PF12840	HTH_20	2.80
PF00583	Acetyltransf_1	1.87
PF07992	Pyr_redox_2	1.87
PF01391	Collagen	1.87
PF00378	ECH_1	0.93
PF13796	Sensor	0.93
PF01381	HTH_3	0.93
PF03631	Virul_fac_BrkB	0.93
PF12681	Glyoxalase_2	0.93
PF00999	Na_H_Exchanger	0.93
PF01613	Flavin_Reduct	0.93
PF00753	Lactamase_B	0.93
PF02518	HATPase_c	0.93
PF02687	FtsX	0.93
PF08240	ADH_N	0.93
PF06351	Allene_ox_cyc	0.93
PF01039	Carboxyl_trans	0.93
PF03734	YkuD	0.93
PF00211	Guanylate_cyc	0.93
PF13385	Laminin_G_3	0.93
PF01435	Peptidase_M48	0.93
PF13559	DUF4129	0.93
PF00561	Abhydrolase_1	0.93
PF08486	SpoIID	0.93
PF04542	Sigma70_r2	0.93
PF00127	Copper-bind	0.93
PF04075	F420H2_quin_red	0.93
PF01168	Ala_racemase_N	0.93
PF00756	Esterase	0.93
PF00294	PfkB	0.93
PF02585	PIG-L	0.93
PF12847	Methyltransf_18	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	5.61
COG3791	Uncharacterized conserved protein	Function unknown [S]	2.80
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	2.80
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.93
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.93
COG4799	Acetyl-CoA carboxylase, carboxyltransferase component	Lipid transport and metabolism [I]	0.93
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.93
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.93
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.93
COG2385	Peptidoglycan hydrolase (amidase) enhancer domain SpoIID	Cell wall/membrane/envelope biogenesis [M]	0.93
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	0.93
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.93
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.93
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.93
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.93
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.93
COG0825	Acetyl-CoA carboxylase alpha subunit	Lipid transport and metabolism [I]	0.93
COG0777	Acetyl-CoA carboxylase beta subunit	Lipid transport and metabolism [I]	0.93
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.93
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.88 %
Unclassified	root	N/A	41.12 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.88 %
Unclassified	root	N/A	41.12 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.88 %
Unclassified	root	N/A	41.12 %

Level 4

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	41.12 %
Unclassified	root	N/A	41.12 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.87 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.93 %
Elusimicrobia	phylum	All Organisms → cellular organisms → Bacteria → Elusimicrobia	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.12 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	36.45 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.87 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.87 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.93 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.12 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	20.56 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.87 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.87 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.93 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.12 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	13.08 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.87 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	1.87 %
Chelatococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae	0.93 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.93 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.93 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.12 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.08 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.87 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.87 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.93 %
unclassified Acidimicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales	0.93 %
Chelatococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	0.93 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.12 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.08 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.87 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.87 %
Chelatococcus reniformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus → Chelatococcus reniformis	0.93 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.93 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.93 %
Couchioplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Couchioplanes	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.12 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.08 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.87 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.87 %
Couchioplanes caeruleus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Couchioplanes → Couchioplanes caeruleus	0.93 %
Chelatococcus reniformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus → Chelatococcus reniformis	0.93 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.93 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2166559005|cont_contig02944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2350
2170459003|FZN2CUW02G0JZR	Not Available	508
3300000364|INPhiseqgaiiFebDRAFT_101691267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1176
3300000956|JGI10216J12902_109883761	Not Available	609
3300000956|JGI10216J12902_112067772	Not Available	627
3300002568|C688J35102_117989324	Not Available	521
3300002568|C688J35102_120284192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	967
3300002568|C688J35102_120760563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1506
3300004081|Ga0063454_100386485	Not Available	928
3300004157|Ga0062590_101207806	Not Available	738
3300004463|Ga0063356_100674126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1416
3300005093|Ga0062594_103207323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	513
3300005329|Ga0070683_100875681	Not Available	861
3300005332|Ga0066388_106110274	Not Available	608
3300005338|Ga0068868_100221775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1583
3300005338|Ga0068868_101084837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	736
3300005355|Ga0070671_100287039	All Organisms → cellular organisms → Bacteria	1400
3300005434|Ga0070709_11606024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530
3300005436|Ga0070713_101247599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	720
3300005437|Ga0070710_10588773	All Organisms → cellular organisms → Bacteria	773
3300005456|Ga0070678_101697266	Not Available	594
3300005564|Ga0070664_100989753	Not Available	790
3300005764|Ga0066903_100267821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Couchioplanes → Couchioplanes caeruleus	2661
3300005764|Ga0066903_100597662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1911
3300005764|Ga0066903_101194026	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1412
3300005764|Ga0066903_105354114	Not Available	678
3300005841|Ga0068863_101226247	All Organisms → cellular organisms → Bacteria	756
3300005842|Ga0068858_101865034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	594
3300006028|Ga0070717_11741222	Not Available	564
3300006032|Ga0066696_10508357	Not Available	790
3300006573|Ga0074055_11266555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1023
3300006854|Ga0075425_100096169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3362
3300006871|Ga0075434_100072762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3429
3300006903|Ga0075426_10171246	Not Available	1570
3300006904|Ga0075424_100455803	All Organisms → cellular organisms → Bacteria	1365
3300009098|Ga0105245_10049654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3758
3300009098|Ga0105245_11852658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	656
3300009120|Ga0117941_1059663	Not Available	1024
3300009148|Ga0105243_11592632	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	679
3300009162|Ga0075423_11374113	All Organisms → cellular organisms → Bacteria	756
3300009176|Ga0105242_10963570	Not Available	858
3300009551|Ga0105238_11984864	All Organisms → cellular organisms → Bacteria → Terrabacteria group	615
3300009789|Ga0126307_10005643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8775
3300009789|Ga0126307_10030246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4160
3300010037|Ga0126304_10704624	Not Available	682
3300010042|Ga0126314_10356199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus → Chelatococcus reniformis	1050
3300010360|Ga0126372_10153687	All Organisms → cellular organisms → Bacteria	1843
3300010376|Ga0126381_101722780	Not Available	905
3300010376|Ga0126381_104279684	Not Available	553
3300012203|Ga0137399_10919765	All Organisms → cellular organisms → Bacteria	736
3300012212|Ga0150985_109977437	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	1256
3300012496|Ga0157353_1050399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	505
3300012951|Ga0164300_10377570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	771
3300012955|Ga0164298_10587923	All Organisms → cellular organisms → Bacteria	762
3300012955|Ga0164298_10774477	Not Available	683
3300012957|Ga0164303_10261318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	998
3300012958|Ga0164299_10070074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1719
3300012958|Ga0164299_11195977	Not Available	575
3300012960|Ga0164301_10355216	All Organisms → cellular organisms → Bacteria	1009
3300012961|Ga0164302_11177599	Not Available	611
3300012977|Ga0134087_10434677	Not Available	647
3300012985|Ga0164308_10128139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1837
3300012986|Ga0164304_11585983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	545
3300012989|Ga0164305_10178322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1472
3300012989|Ga0164305_11758902	Not Available	558
3300013297|Ga0157378_10482505	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1235
3300013297|Ga0157378_12475015	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	571
3300013770|Ga0120123_1008263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1977
3300014498|Ga0182019_10895325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	639
3300015371|Ga0132258_10981608	All Organisms → cellular organisms → Bacteria	2134
3300015371|Ga0132258_11190589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1926
3300015371|Ga0132258_11301466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1837
3300015371|Ga0132258_11508909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1697
3300015371|Ga0132258_12005373	All Organisms → cellular organisms → Bacteria	1456
3300015371|Ga0132258_13141751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1141
3300015373|Ga0132257_103485885	Not Available	572
3300015374|Ga0132255_103599936	Not Available	659
3300017792|Ga0163161_10748039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	818
3300018422|Ga0190265_11657309	Not Available	750
3300018469|Ga0190270_10166835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1814
3300018476|Ga0190274_10053659	Not Available	2934
3300021560|Ga0126371_11164374	Not Available	909
3300021560|Ga0126371_12421063	Not Available	635
3300024323|Ga0247666_1004425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3145
3300025909|Ga0207705_10916364	Not Available	679
3300025927|Ga0207687_10831081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	789
3300025929|Ga0207664_11994450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503
3300025931|Ga0207644_10231036	All Organisms → cellular organisms → Bacteria	1470
3300025935|Ga0207709_10993861	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	685
3300025944|Ga0207661_10475119	Not Available	1141
3300026035|Ga0207703_12303165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	514
3300028755|Ga0307316_10022203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2033
3300029987|Ga0311334_11933068	Not Available	505
3300030294|Ga0311349_10503770	All Organisms → cellular organisms → Bacteria	1146
3300031232|Ga0302323_101823527	Not Available	689
3300031366|Ga0307506_10406882	Not Available	558
3300031546|Ga0318538_10363237	Not Available	782
3300031726|Ga0302321_102091749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	658
3300031769|Ga0318526_10210962	Not Available	794
3300031797|Ga0318550_10241503	Not Available	876
3300031831|Ga0318564_10327007	Not Available	675
3300031910|Ga0306923_10423050	Not Available	1514
3300031939|Ga0308174_10857572	All Organisms → cellular organisms → Bacteria → Terrabacteria group	765
3300032001|Ga0306922_10442860	Not Available	1389
3300032065|Ga0318513_10507819	Not Available	590
3300032261|Ga0306920_101004223	Not Available	1215
3300032261|Ga0306920_101927549	Not Available	830

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.36%
Host-Associated	Host-Associated	32.71%
Engineered	Engineered	0.93%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.42%
Plants	Host-Associated → Plants	32.71%
Aquatic	Environmental → Aquatic	0.93%
Modeled	Engineered → Modeled	0.93%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.89%
Peat	Environmental → Terrestrial → Peat	3.74%
Sediment	Environmental → Aquatic → Sediment	0.93%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.93%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.79%
Loam	Environmental → Terrestrial → Soil → Loam	14.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.41%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.54%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.93%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.67%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.67%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	3.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.87%
Lake Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.93%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.93%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2166559005	Simulated microbial communities from Lyon, France	Engineered
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated
3300009120	Lake sediment microbial communities from Tanners Lake, St. Paul, MN	Environmental
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental
3300012212	Combined assembly of Hopland grassland soil	Host-Associated
3300012496	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610	Environmental
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental
3300029987	I_Fen_E3 coassembly	Environmental
3300030294	II_Fen_E3 coassembly	Environmental
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0944.00000260	2166559005	Simulated	MPRLRTLAFVAAVVVLTDVTWDGTTLHVSFGWPGRKPIASFEFP
E4A_02808100	2170459003	Grass Soil	MARPRSLAIAAVVLVVVTDVTWDGKKLRVSFGWPGRKPIASFVFP
INPhiseqgaiiFebDRAFT_1016912673	3300000364	Soil	MPRLRTVVIIAVVVVVTDVTWDGTSLHISFGWPRRKPIASFVFP*
JGI10216J12902_1098837611	3300000956	Soil	MPRLRTIAIVAAVVVLCDVSWDGNSLHVSFGWPGRKRIVQFSFP*
JGI10216J12902_1120677723	3300000956	Soil	VPRLRTIAVVAVIVVVVTDVTWDGASLRISVGWPGRRRIAQFVFP*
C688J35102_1179893241	3300002568	Soil	MPRLRTVAVAVVVVVMTDVTWDGTSLRISIGWPGRRPLASFVVP*
C688J35102_1202841922	3300002568	Soil	MIGSMPRLRTIAIAAVVVVVTDVTWDGTSLRISVGWPGRKPVASVVFP*
C688J35102_1207605633	3300002568	Soil	MPRFRTIAVAVAIVVITDVTWDGTSLHISIGWPRRKPIASFVFP*
Ga0063454_1003864853	3300004081	Soil	MLRLRTVAVAVVVVAMTDVTWDGTSLRISIGWPGRKPIASFAFP*
Ga0062590_1012078061	3300004157	Soil	MPRLRTIAIAAVAIVVTDVTWDGTSLRISFGWPGRRPIASFVFP*
Ga0063356_1006741262	3300004463	Arabidopsis Thaliana Rhizosphere	MPRLRTIAILAVIVVVTDVTWDGTSLHISFGWPGRRRIVHFVFP*
Ga0062594_1032073232	3300005093	Soil	MPRLRTIAIAAVVVVVVTDVTWDGTSLHISFGWPGRKPIASFLFP*
Ga0070683_1008756811	3300005329	Corn Rhizosphere	MPRLRTIVIVAAVIAATDVTWDGASLRISFGWPGRKPIASFVFP*
Ga0066388_1061102741	3300005332	Tropical Forest Soil	MPRLRTIAIVAAIVVVTDVTWDGTSLHVSFGWPGRRRIVRFVFP*
Ga0068868_1002217751	3300005338	Miscanthus Rhizosphere	PATCEDPIMPRLRTIVIVAAVIAATDVTWDGASLRISFGWPGRKPIASFVFP*
Ga0068868_1010848372	3300005338	Miscanthus Rhizosphere	MPRFRTIALAALVVVVTDVTWDGTSLHVSFGMPRRKPLVSLVFP*
Ga0070671_1002870393	3300005355	Switchgrass Rhizosphere	MPRLRTIAIAAAVIVVTDVTWDGTSLHISFGWPGRKPLASLVFP*
Ga0070709_116060242	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPRLRTIAIVAVVAVVVTDVTWDDTSLRISIGWPGRKRIVQLAFP*
Ga0070713_1012475992	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPRLRTLVILAVVVVVTDVTWDGTSLHISFGWPRRKPIASFVFP*
Ga0070710_105887732	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VPRLRTIAIVAVVAVVVTDVTWDDTSLRISIGWPGRKPIIRFAFP*
Ga0070678_1016972662	3300005456	Miscanthus Rhizosphere	MPRRRTIAIAAVLAVVVTDVTWDGTSLRISIGWPGRRPIASFVFP*
Ga0070664_1009897532	3300005564	Corn Rhizosphere	MPRLRTIVIVAAVIAATDVTWDGASLHISFGWPGRKPIASFVFP*
Ga0066903_1002678212	3300005764	Tropical Forest Soil	VVGAVVVLVVTDITWDGTSLRISFGWPGRKPIVSFVFP*
Ga0066903_1005976623	3300005764	Tropical Forest Soil	VVGAVVVLVVTDVTWDGTSLRISFGWPGRKPILSFVFP*
Ga0066903_1011940262	3300005764	Tropical Forest Soil	TDKIVSVPRLRTVAVATVVFLVITDVTWNGSSLSISFGWPGRRPIASFVFP*
Ga0066903_1053541141	3300005764	Tropical Forest Soil	VPRLRTVAVVAAVVVVVTDVTWDGTSLRVSFGWPGRKPLASFAFPSR
Ga0068863_1012262471	3300005841	Switchgrass Rhizosphere	MPRLRTIAIAAAVIVVTDVTWDGTSLHLSFGLPRRKPLVSLVFP*
Ga0068858_1018650342	3300005842	Switchgrass Rhizosphere	MLARVDPNCEDHPNMPRLRTIAVAAVIVVVVTDVTWDGTSLHISFGWPGRRRLASFVFP*
Ga0070717_117412221	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VPRVRTIAIVAAVVVLTDVTWDGTSLRVSFGWPKRKPVLSLVFP*
Ga0066696_105083572	3300006032	Soil	MPRLGTIAIAVVVVVVTDVTWDGTSLVISFGWPGRKPIASFVFP*
Ga0074055_112665552	3300006573	Soil	VIAAVVVAVTDVTWDDTSLRISFGWPGRKPLVSFVFP*
Ga0075425_1000961693	3300006854	Populus Rhizosphere	MVVAAVVVVITDVTWDGTSLRISFGLPRRKPIASFVFP*
Ga0075434_1000727624	3300006871	Populus Rhizosphere	MVVAAVVVVITDVTWDGTSLRISFGLPRRKPIASFAFP*
Ga0075426_101712461	3300006903	Populus Rhizosphere	IAAVVIVITDVTWDGTSLHISLGWPGRRRLVRLVIP*
Ga0075424_1004558033	3300006904	Populus Rhizosphere	VPRLRTLAIAAVVIVITDVTWDGTSLHISLGWPGRRRLVRLVIP*
Ga0105245_100496541	3300009098	Miscanthus Rhizosphere	APAPPTCEDPIMPRLRTIVIVAAVIAATDVTWDGASLHISFGWPGRKPIASFVFP*
Ga0105245_118526581	3300009098	Miscanthus Rhizosphere	MPRFRTIALAALVVVVSDVTWDGTSLHVSFGLPRRKPLVSLVFP*
Ga0117941_10596631	3300009120	Lake Sediment	MPRLRTVVLAAVVVVVTDVTWDGKVLTVSFGWPGRKPLASFVLP*
Ga0105243_115926322	3300009148	Miscanthus Rhizosphere	MPRIRTIAIPAVVILVTDVTWDVTSLRISIGWPGRRPIASFVLP*
Ga0075423_113741131	3300009162	Populus Rhizosphere	VPRLRTLVIAAVVIVITDVTWDGTSLHISLGWPGRRRL
Ga0105242_109635701	3300009176	Miscanthus Rhizosphere	MPRLRTVAILAVVLVVTDVTWDGTSLRISFGWPRRKP
Ga0105238_119848642	3300009551	Corn Rhizosphere	GPEASSMPRRRTIAIAAVLAVVVTDVTWDGTSLRISIGWPGRRPIASFMFP*
Ga0126307_100056432	3300009789	Serpentine Soil	MIAIAAVVVVVTDVTWDGKSLRISVGWPGRRPIASFLFP*
Ga0126307_100302467	3300009789	Serpentine Soil	VPRLRTLALVALVIVVTDVTWDGTSLHISFGWPGRRPLASFVFP*
Ga0126304_107046242	3300010037	Serpentine Soil	VIAAVVVVMTDVTWDGTSLHVSFGWPRRKRLIQFVIP*
Ga0126314_103561991	3300010042	Serpentine Soil	VIAAVVVVMTDVTWDGTSLHVSFGWPRRKRLVQFVIP*
Ga0126372_101536873	3300010360	Tropical Forest Soil	VVVLVVTDVTWDGTSLRISFGWPGRKPILSFVFP*
Ga0126381_1017227803	3300010376	Tropical Forest Soil	MPRLRTIAVAVVVIVVTDVTWDDGSLRISFGWPGRKPI
Ga0126381_1042796842	3300010376	Tropical Forest Soil	MPRLGTFAIAAAVVVLTDVTWDGTSLTIAFGWPGRRPLATVVFP*
Ga0137399_109197652	3300012203	Vadose Zone Soil	MPRLCTIAIAAMVVVVTDVTWDGTSLRISLGWPGRKPIASFVFP*
Ga0150985_1099774372	3300012212	Avena Fatua Rhizosphere	MLRLRTVAVAVVVVAVTDVTWDGTSLRISIGWPGRKPIVSFAFP*
Ga0157353_10503992	3300012496	Unplanted Soil	MPRLRTIAIAAVVVVVTDVTWDGTSLRISFGWPGRRPVASFVFP*
Ga0164300_103775702	3300012951	Soil	MPRFRTIALAALVVVVTDVTWDGTSLHVSFGLPRRKPLVSLVFP*
Ga0164298_105879231	3300012955	Soil	IAIVAVLVVVTDVTWDGTSLHVSFGWPGRKPVASFVLP*
Ga0164298_107744771	3300012955	Soil	MPRLRTIALATLVNVVTDVTWDGTSLHISIGWPGRTPLASFVFP*
Ga0164303_102613182	3300012957	Soil	MPRLRTLVIAAVVVAVTDVTWDDTSLRISFGWPGRKPLVSFVFP*
Ga0164299_100700744	3300012958	Soil	MPRLRTIAIAAAVIVVTDVTWDGTSLHISFGWPGRKPLASFMFP*
Ga0164299_111959772	3300012958	Soil	MPRLRTIVIAAVVAVVVTDVTWDGTSLHISIGWPGRTPLASFVFP*
Ga0164301_103552163	3300012960	Soil	MPRLRTIAIAAAVIVVTDVTWDGTSLHISFGWPGRKPLASFVFP*
Ga0164302_111775991	3300012961	Soil	MPRFRTIALAALVVVVTDVTWDGTSLHGSFGLPRRKPLVSLVFP*
Ga0134087_104346772	3300012977	Grasslands Soil	MPRFRTIAVAVAIVVITDVTWDGTSLHISIGWPRRKPIASFVF
Ga0164308_101281392	3300012985	Soil	MPRLRTLVIAAVVVAVTDVTWDDTSLRISFGWPGRKPLVSFVFS*
Ga0164304_115859831	3300012986	Soil	LRTLVIAVVVVAVTDVTWDDTSLRISFGWPGRKPLVSFVFP*
Ga0164305_101783222	3300012989	Soil	MPRLRTIAIVAVVVVVTDVTWDGTSLHISVGWPGRRRIVQLVFP*
Ga0164305_117589022	3300012989	Soil	MPRLRTIALATLVIVVTDVTWDGTSLHISIGWPGRTPLASFVFP*
Ga0157378_104825053	3300013297	Miscanthus Rhizosphere	MPRLRTIVIGAIVVAVTDVTWDGTSLHVSFGWPGRKPIASFVFP*
Ga0157378_124750152	3300013297	Miscanthus Rhizosphere	MPRLRTILIAAVVVVVTDVTWDGTSLHVSFGWPGRKPVASFVLP*
Ga0120123_10082631	3300013770	Permafrost	MPRLRSIAIVAVVVVVVSDVTWDGTSLLISIGWPGRTPLASFVFP
Ga0182019_108953251	3300014498	Fen	MTSTASLRTIALAAVVVVVTDVTWDGTSLHISFGWPERRPIASFLFP*
Ga0132258_109816083	3300015371	Arabidopsis Rhizosphere	MPRLRTIAIAVVVVACTDVTWDGTSLHISFGLPKRKPIASFVFP*
Ga0132258_111905894	3300015371	Arabidopsis Rhizosphere	MPRPLRIAIALAVLVVVTDVTWDGTSLHISFGLPGRKRIASIRLP*
Ga0132258_113014661	3300015371	Arabidopsis Rhizosphere	KDPLRMPRLRTIAIAAVIVVLTDVTWDGASLHVSFGLPGRRRIASFVFP*
Ga0132258_115089092	3300015371	Arabidopsis Rhizosphere	MPRARIIAFAAVALVVVTDVTWDGTSLHVSFGWPGRKPLASFVFP*
Ga0132258_120053733	3300015371	Arabidopsis Rhizosphere	MPRLRTIAIAAVVVVVTDVTWDGTSLHISFGWPGRKPLASFVFP*
Ga0132258_131417512	3300015371	Arabidopsis Rhizosphere	VVLVVVTDVTWDGTSLHVSFGWPGRKPLASFVFP*
Ga0132257_1034858851	3300015373	Arabidopsis Rhizosphere	MPRLRTIAIAVVVVVCTDVTWDGTSLHISFGLPKRKPIASFVFP*
Ga0132255_1035999362	3300015374	Arabidopsis Rhizosphere	MPRLRTIAIAVVVVACTDVTWDGTSLHISFGLPKRKPLASFVFP*
Ga0163161_107480393	3300017792	Switchgrass Rhizosphere	AAVVVVVVTDVTWDGTSLRISIGWPGRTPIASFVFP
Ga0190265_116573092	3300018422	Soil	MPRLRTIAIVAVVVVLTDVTWDGTSLRISVGWPGRRRIVQIVFP
Ga0190270_101668352	3300018469	Soil	MPRFRTIAIVAVVVVLIDVTWDGTSLRISVGWPGRRRIVQIVFP
Ga0190274_100536592	3300018476	Soil	MPRLRTIAILAAIIVVTDVTWDGASLRISFGWPRRKPIASFVFP
Ga0126371_111643742	3300021560	Tropical Forest Soil	MPRLRTFVIAAAVVVLTDVTWDGTSLTIAFGWPGRKPLVTLVFP
Ga0126371_124210631	3300021560	Tropical Forest Soil	VIVVTDVTWDGASLRISFGWPGRKPIASLVFPSSGS
Ga0247666_10044252	3300024323	Soil	MPRLGMIAIAAMVVVVTDVTWDGMSLHISVGWPGRRPIASFVFP
Ga0207705_109163642	3300025909	Corn Rhizosphere	TIVIVAAVIAATDVTWDGASLHISFGWPGRKPIASFVFP
Ga0207687_108310811	3300025927	Miscanthus Rhizosphere	MPRLRTIVIVAAVIAATDVTWDGASLHISFGWPGRKPIASFVFP
Ga0207664_119944501	3300025929	Agricultural Soil	AEIRKDLGVPRLRTIAIVAAVAVVVTDVTWDDTSLRISIGWPGRKPIIRFAFP
Ga0207644_102310362	3300025931	Switchgrass Rhizosphere	MPRLRTIAIAAAVIVVTDVTWDGTSLHISFGWPGRKPLASLVFP
Ga0207709_109938612	3300025935	Miscanthus Rhizosphere	MPRIRTIAIPAVVILVTDVTWDVTSLRISIGWPGRRPIASFVLP
Ga0207661_104751192	3300025944	Corn Rhizosphere	MPRLRTIVIVAAFIAATDVTWDGASLRISFGWPGRKPIASFVFP
Ga0207703_123031651	3300026035	Switchgrass Rhizosphere	MLARVDPNCEDHPNMPRLRTIAVAAVIVVVVTDVTWDGTSLHISFGWPGRRRLASFVFP
Ga0307316_100222032	3300028755	Soil	VPRFRTVAVAAVVVLVITDVTWDGTSLRISFGWPRRKPIASFMFP
Ga0311334_119330681	3300029987	Fen	ASRQAPIRNMTNTASLRTIALAAVVVVVTDVTWDGTSLHISFGWPGRRPIASFVFP
Ga0311349_105037702	3300030294	Fen	MTNTASLRTIALAAVVVIVTDVTWDGTSLHISFGWPERRPIASFLFP
Ga0302323_1018235272	3300031232	Fen	LAAVVVVVTDVTWDGTSLHISFGWPGRRPIASFVFP
Ga0307506_104068822	3300031366	Soil	MPRLRTIAIAAAVIVVTDVTWDGTSLHISFGWPGRKPLASFMFP
Ga0318538_103632372	3300031546	Soil	MPRLRTFVIAAAVVVLTDVTWDGTSLTITFGWPGRKPLATVVLP
Ga0302321_1020917492	3300031726	Fen	MTNTASLRTIALAAVVVVVTDVTWDGTSLHISFGWPGRRPIASFVFP
Ga0318526_102109621	3300031769	Soil	MPRLRTFVIAAAVVVLSDVTWDGTSLTIAFGWPGRKPLATVVLP
Ga0318550_102415033	3300031797	Soil	MPRLRTFVIAAAVVVLTDVTWDGTSLTIAFGWPGRKPLATVV
Ga0318564_103270071	3300031831	Soil	AAAVVVLTDVTWDGTSLTIAFGWPGRKPLATVVLP
Ga0306923_104230503	3300031910	Soil	MPRLRTFVIAAAVVVLTDVTWDGTSLTIAFGWPGRKPLATVVLP
Ga0308174_108575722	3300031939	Soil	MPRLRTIAIAAVVIVVTDVTWDGTSLRVSVGWPGRRPLASFFLP
Ga0306922_104428602	3300032001	Soil	MPRLRTFVVAAAVVVLTDVTWDGTSLTITFGWPGRKPLATVVLP
Ga0318513_105078192	3300032065	Soil	LGMPRLRTFVIAAAVVVLTDVTWDGTSLTIAFGWPGRKPLATVVLP
Ga0306920_1010042232	3300032261	Soil	MVALVAVAVVVVTDVTWDGTSLRVSFGWPGRKPFASFVFP
Ga0306920_1019275492	3300032261	Soil	MPTHPRLRTLLIVLAVIVFTDVTWDGTSLRLSFGWPRRRPIVSFDFP