Metagenome / Metatranscriptome Family F092011

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092011
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	47 residues
Representative Sequence	MDTPDDVFHTAVLVIGVLGILVSLAGIAFWWVSRKMNRLT
Number of Associated Samples	91
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	30.84 %
% of genes near scaffold ends (potentially truncated)	28.04 %
% of genes from short scaffolds (< 2000 bps)	80.37 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.981 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil (11.215 % of family members)
Environment Ontology (ENVO)	Unclassified (32.710 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.925 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.41% β-sheet: 0.00% Coil/Unstructured: 45.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF09343	DUF2460	35.51
PF00561	Abhydrolase_1	14.02
PF12697	Abhydrolase_6	11.21
PF01053	Cys_Met_Meta_PP	8.41
PF09931	DUF2163	1.87
PF06199	Phage_tail_2	1.87
PF00072	Response_reg	0.93
PF09550	Phage_TAC_6	0.93
PF00775	Dioxygenase_C	0.93
PF11836	Phage_TAC_11	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	8.41
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	8.41
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	8.41
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	8.41
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	8.41
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	8.41
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	8.41
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	8.41
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	8.41
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	8.41
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	8.41
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.98 %
Unclassified	root	N/A	14.02 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.98 %
Unclassified	root	N/A	14.02 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.98 %
Unclassified	root	N/A	14.02 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	84.11 %
Unclassified	root	N/A	14.02 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	48.60 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	17.76 %
Unclassified	root	N/A	14.02 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	21.50 %
Unclassified	root	N/A	14.02 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	3.74 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.80 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.02 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	10.28 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.74 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.80 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.02 %
Tardiphaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	4.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.74 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.80 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.02 %
Tardiphaga robiniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	4.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.74 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.80 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.02 %
Tardiphaga robiniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	4.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.74 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.80 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886007\|SwRhRL2b_contig_2440282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	930	Open in IMG/M
2228664021\|ICCgaii200_c0868665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	737	Open in IMG/M
3300000881\|JGI10215J12807_1076701	All Organisms → cellular organisms → Bacteria → Proteobacteria	1684	Open in IMG/M
3300004114\|Ga0062593_100172725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	1678	Open in IMG/M
3300004156\|Ga0062589_100239452	All Organisms → cellular organisms → Bacteria → Proteobacteria	1350	Open in IMG/M
3300004156\|Ga0062589_100265140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1299	Open in IMG/M
3300004156\|Ga0062589_100374439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1143	Open in IMG/M
3300004156\|Ga0062589_102911054	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300004157\|Ga0062590_101099171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	766	Open in IMG/M
3300004157\|Ga0062590_102694281	All Organisms → cellular organisms → Bacteria → Proteobacteria	530	Open in IMG/M
3300004463\|Ga0063356_105842174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	528	Open in IMG/M
3300004480\|Ga0062592_101830778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	595	Open in IMG/M
3300004643\|Ga0062591_100998643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	796	Open in IMG/M
3300005164\|Ga0066815_10006776	Not Available	1305	Open in IMG/M
3300005168\|Ga0066809_10152241	Not Available	601	Open in IMG/M
3300005290\|Ga0065712_10001175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8151	Open in IMG/M
3300005332\|Ga0066388_100238809	All Organisms → cellular organisms → Bacteria → Proteobacteria	2453	Open in IMG/M
3300005332\|Ga0066388_101190036	All Organisms → cellular organisms → Bacteria	1301	Open in IMG/M
3300005332\|Ga0066388_108462784	Not Available	512	Open in IMG/M
3300005366\|Ga0070659_100692178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	881	Open in IMG/M
3300005367\|Ga0070667_100856612	All Organisms → cellular organisms → Bacteria → Proteobacteria	845	Open in IMG/M
3300005438\|Ga0070701_10068834	All Organisms → cellular organisms → Bacteria → Proteobacteria	1887	Open in IMG/M
3300005440\|Ga0070705_100083106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	1972	Open in IMG/M
3300005445\|Ga0070708_100392270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1309	Open in IMG/M
3300005455\|Ga0070663_101847128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
3300005458\|Ga0070681_10409869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1267	Open in IMG/M
3300005530\|Ga0070679_100018605	All Organisms → cellular organisms → Bacteria → Proteobacteria	6744	Open in IMG/M
3300005535\|Ga0070684_100156757	All Organisms → cellular organisms → Bacteria → Proteobacteria	2065	Open in IMG/M
3300005545\|Ga0070695_100567125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	887	Open in IMG/M
3300005713\|Ga0066905_100020952	All Organisms → cellular organisms → Bacteria → Proteobacteria	3476	Open in IMG/M
3300005713\|Ga0066905_101436727	Not Available	626	Open in IMG/M
3300005713\|Ga0066905_101476412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	618	Open in IMG/M
3300005713\|Ga0066905_101929092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	547	Open in IMG/M
3300005842\|Ga0068858_100287641	All Organisms → cellular organisms → Bacteria → Proteobacteria	1566	Open in IMG/M
3300005937\|Ga0081455_10005892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13312	Open in IMG/M
3300006573\|Ga0074055_11738252	All Organisms → cellular organisms → Bacteria → Proteobacteria	680	Open in IMG/M
3300006577\|Ga0074050_12042407	All Organisms → cellular organisms → Bacteria → Proteobacteria	1259	Open in IMG/M
3300006580\|Ga0074049_13191423	All Organisms → cellular organisms → Bacteria → Proteobacteria	2115	Open in IMG/M
3300006581\|Ga0074048_10046678	Not Available	1095	Open in IMG/M
3300006581\|Ga0074048_13353110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	570	Open in IMG/M
3300006755\|Ga0079222_11072335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	703	Open in IMG/M
3300006854\|Ga0075425_100241958	All Organisms → cellular organisms → Bacteria → Proteobacteria	2076	Open in IMG/M
3300006854\|Ga0075425_100652234	Not Available	1210	Open in IMG/M
3300006914\|Ga0075436_100754689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	723	Open in IMG/M
3300009094\|Ga0111539_11107518	All Organisms → cellular organisms → Bacteria → Proteobacteria	920	Open in IMG/M
3300009174\|Ga0105241_12377063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	529	Open in IMG/M
3300009176\|Ga0105242_10595714	Not Available	1067	Open in IMG/M
3300009553\|Ga0105249_11266324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	809	Open in IMG/M
3300010047\|Ga0126382_10206941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1401	Open in IMG/M
3300010360\|Ga0126372_12100259	Not Available	613	Open in IMG/M
3300010362\|Ga0126377_10744960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1035	Open in IMG/M
3300010371\|Ga0134125_11505524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	733	Open in IMG/M
3300010373\|Ga0134128_10760254	Not Available	1075	Open in IMG/M
3300010375\|Ga0105239_12321441	Not Available	624	Open in IMG/M
3300010400\|Ga0134122_11813150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	642	Open in IMG/M
3300010403\|Ga0134123_12052294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	631	Open in IMG/M
3300012485\|Ga0157325_1000932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1241	Open in IMG/M
3300012908\|Ga0157286_10072180	All Organisms → cellular organisms → Bacteria → Proteobacteria	947	Open in IMG/M
3300012958\|Ga0164299_10028622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2392	Open in IMG/M
3300012960\|Ga0164301_10003243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5657	Open in IMG/M
3300013297\|Ga0157378_11427153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	736	Open in IMG/M
3300013307\|Ga0157372_10622266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1258	Open in IMG/M
3300014745\|Ga0157377_10875498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	669	Open in IMG/M
3300014969\|Ga0157376_11493424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	709	Open in IMG/M
3300015201\|Ga0173478_10009490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2474	Open in IMG/M
3300015371\|Ga0132258_13020589	All Organisms → cellular organisms → Bacteria → Proteobacteria	1166	Open in IMG/M
3300015374\|Ga0132255_105539873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300019356\|Ga0173481_10001014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6530	Open in IMG/M
3300019361\|Ga0173482_10000091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12759	Open in IMG/M
3300019362\|Ga0173479_10146064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	939	Open in IMG/M
3300022880\|Ga0247792_1000959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4699	Open in IMG/M
3300022892\|Ga0247753_1036586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	599	Open in IMG/M
3300023073\|Ga0247744_1014717	Not Available	1078	Open in IMG/M
3300023263\|Ga0247800_1002590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2734	Open in IMG/M
3300025911\|Ga0207654_11042221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	595	Open in IMG/M
3300025912\|Ga0207707_11397075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	559	Open in IMG/M
3300025919\|Ga0207657_10839446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	709	Open in IMG/M
3300025921\|Ga0207652_10808785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	832	Open in IMG/M
3300025924\|Ga0207694_11521623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	565	Open in IMG/M
3300025930\|Ga0207701_11081679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	665	Open in IMG/M
3300025941\|Ga0207711_11515253	All Organisms → cellular organisms → Bacteria → Terrabacteria group	614	Open in IMG/M
3300025981\|Ga0207640_10087564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2147	Open in IMG/M
3300025981\|Ga0207640_11605861	Not Available	586	Open in IMG/M
3300025986\|Ga0207658_10799388	All Organisms → cellular organisms → Bacteria → Proteobacteria	856	Open in IMG/M
3300026779\|Ga0207471_101910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	736	Open in IMG/M
3300026853\|Ga0207443_1002229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	910	Open in IMG/M
3300027252\|Ga0209973_1058733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	589	Open in IMG/M
3300027453\|Ga0207624_106077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	671	Open in IMG/M
3300027617\|Ga0210002_1012748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1308	Open in IMG/M
3300027682\|Ga0209971_1058938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	929	Open in IMG/M
3300027876\|Ga0209974_10012219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2874	Open in IMG/M
3300027876\|Ga0209974_10077396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1140	Open in IMG/M
3300027907\|Ga0207428_10515403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	867	Open in IMG/M
3300028381\|Ga0268264_12293052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	547	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1002895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3243	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10001951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	5295	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10017475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1842	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1004761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3239	Open in IMG/M
3300031716\|Ga0310813_10021398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4422	Open in IMG/M
3300031908\|Ga0310900_11422043	Not Available	583	Open in IMG/M
3300032013\|Ga0310906_10094601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1622	Open in IMG/M
3300032144\|Ga0315910_10992906	Not Available	655	Open in IMG/M
3300032180\|Ga0307471_101264387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	901	Open in IMG/M
3300032205\|Ga0307472_100100670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1987	Open in IMG/M
3300032205\|Ga0307472_101255494	Not Available	711	Open in IMG/M
3300032205\|Ga0307472_102627735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300033004\|Ga0335084_10294809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1677	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.42%
Host-Associated	Host-Associated	34.58%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.42%
Plants	Host-Associated → Plants	34.58%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.63%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.79%
Loam	Environmental → Terrestrial → Soil → Loam	14.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.95%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.21%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.67%
Sand	Environmental → Terrestrial → Soil → Sand	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	15.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.74%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	11.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.54%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	5.61%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	3.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012485	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.7.old.040610	Host-Associated	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300022892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5	Environmental	Open in IMG/M
3300023073	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5	Environmental	Open in IMG/M
3300023263	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026779	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2w-11 (SPAdes)	Environmental	Open in IMG/M
3300026853	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5w-12 (SPAdes)	Environmental	Open in IMG/M
3300027252	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027453	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-D (SPAdes)	Environmental	Open in IMG/M
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL2b_0599.00001110	2162886007	Switchgrass Rhizosphere	MDTSDAVFHIAVLVIGVLGILLSLAGIAFWWASRKMNRLT
ICCgaii200_08686652	2228664021	Soil	MDYLLENNSEPVPVHCRFGGMDAPEILXHTVVLXVAVLGILISLAGIAFWWVSRKMNRLT
JGI10215J12807_10767013	3300000881	Soil	SDAVFHIAVLVIGVLGILLSLAGIAFWWASRKMNRLT*
Ga0062593_1001727252	3300004114	Soil	VEWSHRLPFDNNSEPVPVHCRFGGMDAPEILIHTVVLAIAVLGILISLAGIAFWWVSRKMNRLT*
Ga0062589_1002394522	3300004156	Soil	MPAQCRFGGMDAPDAILHIALLVVGVLGILISLAGIVFWWVSRKMNRLT*
Ga0062589_1002651402	3300004156	Soil	MSSAEIAIHTAILVVAVLGILIALAGIAFWWVSRKMNRLT*
Ga0062589_1003744393	3300004156	Soil	MSRITFLNRKSEPAAVHCRFGGMDAPEILIHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT*
Ga0062589_1029110541	3300004156	Soil	MPDHCRFGGMDALHATVHTAVLVLAVLGILVSLAGIAFWWVSRKMNRLT*
Ga0062590_1010991712	3300004157	Soil	HCRFGGMDAPEILIHTVVLAIAVLGILISLAGIAFWWVSRKMNRLT*
Ga0062590_1026942812	3300004157	Soil	MDAPEILIHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT*
Ga0063356_1058421742	3300004463	Arabidopsis Thaliana Rhizosphere	MSRITFLNRRSEPVPVHCRFGGMDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT*
Ga0062592_1018307782	3300004480	Soil	MDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT*
Ga0062591_1009986432	3300004643	Soil	VEWSHRLPFDNNSEPVPVHCRFGGMDAPEILIHTVVVAITVLGILISLAGIAFWWVSRKMNRLT*
Ga0066815_100067761	3300005164	Soil	MDTSDAVFHIAVLVIGVLGILLSLAGIAFWWASRKMNRLT*
Ga0066809_101522412	3300005168	Soil	MRAEPAPVHCRFGGMDTPDALVHTAVLVIGVLGILVSLAGIAFWWVSRKMNRLT*
Ga0065712_100011758	3300005290	Miscanthus Rhizosphere	MDASDAVFHIAVLVIGVLGILLSLAGIAFWWASRKMNRLT*
Ga0066388_1002388094	3300005332	Tropical Forest Soil	MDYLFAQNGEPARPHDRFAAMSEPETVLHIAILVIAVLGILISLAGIAFWWVSRKMGRLT
Ga0066388_1011900362	3300005332	Tropical Forest Soil	MAGPEPLWVHCSFATMSLEEITIHIVILVVAVLGILIALAGIAFWWVSRKMKRLT*
Ga0066388_1084627842	3300005332	Tropical Forest Soil	MDEPEIVFHTAILVIAVLGILISLAGIAFWWVSRKMNRLT*
Ga0070659_1006921782	3300005366	Corn Rhizosphere	YLLQLRWELMPAQCRFGGMDAPDAILHIALLVVGVLGILISLAGIVFWWVSRKMNRLT*
Ga0070667_1008566122	3300005367	Switchgrass Rhizosphere	MPAQCRFGGMDAPDAILHIALLVVGVLAILISLAGIVFWWVSRKMNRLT*
Ga0070701_100688342	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MDTSDAVFHIAVLVIGVLGILLSLAGITFWWASRKMNRLT*
Ga0070705_1000831061	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MDAPEILIHTVVVAITVLGILISLAGIAFWWVSRKMNRLT*
Ga0070708_1003922703	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	SEPVPVHCRFGGMDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT*
Ga0070663_1018471281	3300005455	Corn Rhizosphere	MPDHCRFGGMDALHATVHTAVLVIAVLGILVSLAGIAFWWVSRKMNRLT*
Ga0070681_104098694	3300005458	Corn Rhizosphere	VEWSHRLPFDNNSEPVPVHCRFGGMDAPEILIHTVVVAITVLGILISLAGIAFW
Ga0070679_1000186053	3300005530	Corn Rhizosphere	VPVHCRFGGMDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT*
Ga0070684_1001567572	3300005535	Corn Rhizosphere	MDASDAVFHIAVLVIGVLGILLSLAGITFWWASRKMNRLT*
Ga0070695_1005671252	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VPVHCRFGGMDAPEILIHTVVVAITVLGILISLAGIAFWWVSRKMNRLT*
Ga0066905_1000209524	3300005713	Tropical Forest Soil	MSMPEITIHTAILVIAVLGILISLAGIAFWWVSRKMNRLT*
Ga0066905_1014367271	3300005713	Tropical Forest Soil	MAGPEPLWAHCRFAAMTMPEITIHTAILVIGVLGILISLAGIAFWWVSRKMNRLT*
Ga0066905_1014764121	3300005713	Tropical Forest Soil	CCFGGMDAPDTFIHVAVLMIAVLGILISLAGIAFWWMSRKMNRLT*
Ga0066905_1019290922	3300005713	Tropical Forest Soil	MVSTEVVIHTAILVVAALGILISLAGIVFWWVSRKMNRLT*
Ga0068858_1002876411	3300005842	Switchgrass Rhizosphere	GMDTSDAVFHIAVLVIGVLGILLSLAGIAFWWASRKMNRLT*
Ga0081455_1000589218	3300005937	Tabebuia Heterophylla Rhizosphere	MSVPEITIHTAILAIAVLGILISLAGIAFWWVSRKMKRLT*
Ga0074055_117382522	3300006573	Soil	MKSWITFLDKNAEPAPTHCRFGGMDAPEILVHTAVLLIGVLGILVSLAGIAFWWVSRKMNRLT*
Ga0074050_120424072	3300006577	Soil	VLAHCRFGGMDTPNVVFHTAILVIGVLGILVSLAGIAFWWVSRKMNRLT*
Ga0074049_131914233	3300006580	Soil	APAHCRFGGMDAPEILVHTAVLVIGVLGILVSLAGIAFWWVSRKMNRLT*
Ga0074048_100466782	3300006581	Soil	MRAEPAPVHCRFGGMDTPDALVHTAVSVIGVLGILVSLAGIAFWWVSRKMNRLT*
Ga0074048_133531102	3300006581	Soil	RFGGMDTSDAVFHIAVLVIGVLGILLSLAGIAFWWASRKMNRLT*
Ga0079222_110723352	3300006755	Agricultural Soil	LELAPDHCRSGGMDAPDVIIHAVITALAVLAILVSLTGIVFWWVSRKMNRLT*
Ga0075425_1002419583	3300006854	Populus Rhizosphere	MAGREPLDAHCRFAAMSSAEITIHTAILVIAVLGILISLAGIAFWLVWRKMNRLT*
Ga0075425_1006522342	3300006854	Populus Rhizosphere	MSSAEIVIHTAILVVAVPGILIALAGIAFWWVLRKMNRLT
Ga0075436_1007546891	3300006914	Populus Rhizosphere	ITIHTAILVIAVLGILISLAGIAFWLVWRKMNRLT*
Ga0111539_111075182	3300009094	Populus Rhizosphere	MDASDTVIHIVVLVIAVLGILISLAGIAFWWVSRKMNRLT*
Ga0105241_123770631	3300009174	Corn Rhizosphere	GGMDTSDAVFHIAVLVIGVLGILLSLAGIAVWWASRKMNRLT*
Ga0105242_105957141	3300009176	Miscanthus Rhizosphere	APAHRRSGGMDTSDAVFHIAVLVIGVLGILLSLAGIAFWWASRKMNRLT*
Ga0105249_112663241	3300009553	Switchgrass Rhizosphere	EILIHTVVVAIAVLGILISLAGIAFWWVSRKMNRLT*
Ga0126382_102069413	3300010047	Tropical Forest Soil	MPEITIHTAILVIAVLGILISLAGIAFWWVSRKMNRLT*
Ga0126372_121002591	3300010360	Tropical Forest Soil	MSLEEITIHIVILVVAVLGILIALAGIAFWWVSRKMNRLT*
Ga0126377_107449602	3300010362	Tropical Forest Soil	MSSDEIVIHTAILVVAVLGILVSLAGIAFWWVSRKLKRLT*
Ga0134125_115055242	3300010371	Terrestrial Soil	MDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRK
Ga0134128_107602542	3300010373	Terrestrial Soil	CRFGGMDALHATVHTAVLVLAVLGILVSLAGIAFWWVSRKMNRLT*
Ga0105239_123214412	3300010375	Corn Rhizosphere	MDAQDAIVHIALLAVGVLGILISLAGIVFWWVSRKMNRLT*
Ga0134122_118131501	3300010400	Terrestrial Soil	MPDHCRFGGMDALHATVHTAVLVLAVLGILISLAGITFWWASRKMNRLT*
Ga0134123_120522942	3300010403	Terrestrial Soil	SEPVPVHCRFGGMDAPEILIHTVVVAITVLGILISLAGIAFWWVSRKMNRLT*
Ga0157325_10009323	3300012485	Arabidopsis Rhizosphere	MDTSDPVFHIAVLVIGVLGILLSLAGIAFWWASRKKNRLK*
Ga0157286_100721802	3300012908	Soil	MPAQCRFGGMDALHATVHTAVLVLAVLGILVSLAGIAFWWVSRKMNRLT*
Ga0164299_100286224	3300012958	Soil	MDTSDAVLQDAVLVIGVLGILLSLAGIAFWWASRKMNRLT*
Ga0164301_100032435	3300012960	Soil	MSRITFLNRRSEPVPVHYRFGGMDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT*
Ga0157378_114271531	3300013297	Miscanthus Rhizosphere	TSDAVFHIAVLVIGVLGILLSLAGIAFWWASRKMNRLT*
Ga0157372_106222663	3300013307	Corn Rhizosphere	GGMDTSDAVFHIAVLVIGVLGILLSLAGIAFWWASRKMNRLT*
Ga0157377_108754981	3300014745	Miscanthus Rhizosphere	PAPAHRRFGGMDASDAVFHIAVLVIGVLGILLSLAGIAFWWASRKMNRLT*
Ga0157376_114934242	3300014969	Miscanthus Rhizosphere	MDTSDAVFRIAVLVIGVLGILLSLAGIAFWWASRKMNRLT*
Ga0173478_100094904	3300015201	Soil	MDASDAVFHIAGLVIGVLGILLSLAGIAFWWASRKMNRLT*
Ga0132258_130205892	3300015371	Arabidopsis Rhizosphere	MGSPDAIVHTAVLVIGVLGILISLAGIAFWWVSRKMNRLT*
Ga0132255_1055398732	3300015374	Arabidopsis Rhizosphere	MGSPDAIVHTAVLVIGVLGILISLAGIVFWWVSRKMNRLT*
Ga0173481_100010148	3300019356	Soil	MDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT
Ga0173482_100000918	3300019361	Soil	MDASDAVFHIAVLVIGVLGILLSLAGIAFWWASRKMNRLT
Ga0173479_101460641	3300019362	Soil	MDAPEILIHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT
Ga0247792_10009592	3300022880	Soil	MSRITFLNRRSEPVPVHCRFGGMDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT
Ga0247753_10365861	3300022892	Soil	SDAVFHIAVLVIGVLGILLSLAGIAFWWASRKMNRLT
Ga0247744_10147172	3300023073	Soil	VHCRFGGMDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT
Ga0247800_10025902	3300023263	Soil	VPVHCRFGGMDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT
Ga0207654_110422211	3300025911	Corn Rhizosphere	MDASDAVFHIAVLVIGVLGILLSLAGIAVWWASRKMNRLT
Ga0207707_113970752	3300025912	Corn Rhizosphere	PAHCRFGGMDTSDAVFHIAVLVIGVLGILLSLAGIAFWWASRKMNRLT
Ga0207657_108394462	3300025919	Corn Rhizosphere	MPAQCRFGGMDAPDAILHIALLVVGVLGILISLAGIVFWWVSRKMNRLT
Ga0207652_108087852	3300025921	Corn Rhizosphere	MDAPEILIHTVVVAITVLGILISLAGIAFWWVSRKMNRLT
Ga0207694_115216232	3300025924	Corn Rhizosphere	MDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRKMNR
Ga0207701_110816791	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VTDYLLQLRWELMPAQCRFGGMDAPDAILHIALLVVGVLGILISLAGIVFWWVSRKMNRL
Ga0207711_115152531	3300025941	Switchgrass Rhizosphere	MPDHCRFGGMDALHATVHTAVLVLAVLGILVSLAGIAFWWV
Ga0207640_100875644	3300025981	Corn Rhizosphere	MDTSDAVFHIAVLVIGVLGILLSLAGITFWWASRKMNRLT
Ga0207640_116058611	3300025981	Corn Rhizosphere	LLQLRWELMPAQCRFGGMDAPDAILHIALLVVGVLGILISLAGIVFWWVSRKMNRLT
Ga0207658_107993882	3300025986	Switchgrass Rhizosphere	MPAQCRFGGMDAPDAILHIALLVVGVLAILISLAGIVFWWVSRKMNRLT
Ga0207471_1019102	3300026779	Soil	VPVHYRFGGMDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT
Ga0207443_10022291	3300026853	Soil	VPVHCRFGGMDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRKMNRL
Ga0209973_10587332	3300027252	Arabidopsis Thaliana Rhizosphere	VPVHCRFGGMDAPEILIHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT
Ga0207624_1060772	3300027453	Soil	GGMDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT
Ga0210002_10127483	3300027617	Arabidopsis Thaliana Rhizosphere	MDTPDAVFHTAVLVIAALGILISLAGIAFWWVSRKMNRLT
Ga0209971_10589382	3300027682	Arabidopsis Thaliana Rhizosphere	MDYLLENNSEPVPVHCRFGGMDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT
Ga0209974_100122194	3300027876	Arabidopsis Thaliana Rhizosphere	VDLGTPALRGQELAPAHRRFGGMDTPDAVFHTAVLVIAALGILISLAGIAFWWVSRKMNRLT
Ga0209974_100773962	3300027876	Arabidopsis Thaliana Rhizosphere	MDYLLENNSEPVPVHCRFGGMDAPEILIHTVVLAVAVLGILISLAGIAFWWLSRKMNRLT
Ga0207428_105154032	3300027907	Populus Rhizosphere	MDASDTVIHIVVLVIAVLGILISLAGIAFWWVSRKMNRLT
Ga0268264_122930522	3300028381	Switchgrass Rhizosphere	MPDHCRFGGMDALHATVHTAVLVIAVLGILVSLAGIAFWWVSRKMNRLT
(restricted) Ga0255311_10028951	3300031150	Sandy Soil	FGNNSEPVPVHCRFGGMDAPEILIHTVVLAIAVLGILISLAGIAFWWVSRKMNRLT
(restricted) Ga0255310_100019515	3300031197	Sandy Soil	MDAPEILIHTVVLAIAVLGILISLAGIAFWWVSRKMNRLT
(restricted) Ga0255310_100174751	3300031197	Sandy Soil	MDTPDDVFHTAVLVIGVLGILVSLAGIAFWWVSRKMNRLT
(restricted) Ga0255312_10047614	3300031248	Sandy Soil	VPVHCRFGGMDAPEILIHTVVLAIAVLGILISLAGIAFWWVSRKMNRLT
Ga0310813_100213981	3300031716	Soil	MDAQDAIVHTALLAVGVLGILISLAGIVFWWVSRKMNRLT
Ga0310900_114220432	3300031908	Soil	MRAEPAPVHCRFGGMDTPDALVHTAVSVIGVLGILVSLAGIAFWWVSRKMNRLT
Ga0310906_100946013	3300032013	Soil	MRAEPAPVHCRFGGMDTPDALVHTAVLVIGVLGILVSLAGIAFWWVSRKMNRLT
Ga0315910_109929062	3300032144	Soil	MDAPEILIHTVVFAVAVLGILISLAGIAFWWVSRKMKRLS
Ga0307471_1012643872	3300032180	Hardwood Forest Soil	MAEPEPSRVHCRFAAMDEHEIVFHTALLVIGVLGILISLAGIAFWWVSRKMNRLT
Ga0307472_1001006703	3300032205	Hardwood Forest Soil	MDEHEIVFHTALLVIGVLGILISLAGIAFWWVSRKMNRLT
Ga0307472_1012554942	3300032205	Hardwood Forest Soil	MSSAEIVIHTAILVVAVLGILIALAGIAFWWVLRKMNRLT
Ga0307472_1026277351	3300032205	Hardwood Forest Soil	MSRITFLNRRSEPVPVHYRFGGMDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT
Ga0335084_102948092	3300033004	Soil	MGPPDVIVHTAILVIGVLGILISLAGIAFWWVSRKMNRLT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters