Metagenome / Metatranscriptome Family F092005

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092005
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	146 residues
Representative Sequence	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATARISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDALRRISLRVRAAFGLAVVFLMIAKPDAVVSLVVFALALGVSTLVGLPIGLKQPSGLSSTRA
Number of Associated Samples	84
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.53 %
% of genes near scaffold ends (potentially truncated)	48.60 %
% of genes from short scaffolds (< 2000 bps)	83.18 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.551 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (7.477 % of family members)
Environment Ontology (ENVO)	Unclassified (54.206 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (68.224 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 68.00% β-sheet: 0.00% Coil/Unstructured: 32.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF08281	Sigma70_r4_2	8.41
PF04542	Sigma70_r2	6.54
PF00903	Glyoxalase	5.61
PF12680	SnoaL_2	3.74
PF00072	Response_reg	2.80
PF13564	DoxX_2	2.80
PF06271	RDD	1.87
PF07730	HisKA_3	1.87
PF07859	Abhydrolase_3	1.87
PF11158	DUF2938	1.87
PF01814	Hemerythrin	0.93
PF12867	DinB_2	0.93
PF15899	BNR_6	0.93
PF12697	Abhydrolase_6	0.93
PF07883	Cupin_2	0.93
PF12681	Glyoxalase_2	0.93
PF13795	HupE_UreJ_2	0.93
PF13145	Rotamase_2	0.93
PF01850	PIN	0.93
PF01494	FAD_binding_3	0.93
PF13545	HTH_Crp_2	0.93
PF16576	HlyD_D23	0.93
PF13474	SnoaL_3	0.93
PF00196	GerE	0.93
PF02627	CMD	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	6.54
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	6.54
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	6.54
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	6.54
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.87
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	1.87
COG1714	Uncharacterized membrane protein YckC, RDD family	Function unknown [S]	1.87
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	1.87
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	1.87
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	1.87
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	1.87
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.93
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.93
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.93
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.93
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.93

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.55 %
Unclassified	root	N/A	36.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.55 %
Unclassified	root	N/A	36.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.55 %
Unclassified	root	N/A	36.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	16.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	12.15 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11.21 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.93 %
Oligoflexia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia	0.93 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9.35 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Bdellovibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales	0.93 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	3.74 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.87 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.93 %
Bdellovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Dermabacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae	1.87 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.87 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	1.87 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.93 %
Chelativorans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans	0.93 %
Bdellovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Brachybacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae → Brachybacterium	1.87 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.87 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	1.87 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.93 %
unclassified Bdellovibrio	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio → unclassified Bdellovibrio	0.93 %
Chelativorans xinjiangense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → Chelativorans xinjiangense	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Brachybacterium phenoliresistens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae → Brachybacterium → Brachybacterium phenoliresistens	1.87 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	1.87 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	1.87 %
Bdellovibrio sp. NC01	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio → unclassified Bdellovibrio → Bdellovibrio sp. NC01	0.93 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.93 %
Chelativorans xinjiangense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → Chelativorans xinjiangense	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Arthrobacter sp. MA-N2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. MA-N2	1.87 %
Brachybacterium phenoliresistens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae → Brachybacterium → Brachybacterium phenoliresistens	1.87 %
Streptomyces sp. CNH287	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. CNH287	0.93 %
Streptomyces sp. AA4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. AA4	0.93 %
Bdellovibrio sp. NC01	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio → unclassified Bdellovibrio → Bdellovibrio sp. NC01	0.93 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.93 %
Chelativorans xinjiangense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → Chelativorans xinjiangense	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100585696	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100586437	All Organisms → cellular organisms → Bacteria	1745	Open in IMG/M
3300000956\|JGI10216J12902_108050142	All Organisms → cellular organisms → Bacteria → Acidobacteria	1245	Open in IMG/M
3300001305\|C688J14111_10281457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. AA4	525	Open in IMG/M
3300001686\|C688J18823_10067938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2472	Open in IMG/M
3300002568\|C688J35102_120424070	All Organisms → cellular organisms → Bacteria → Acidobacteria	1058	Open in IMG/M
3300004114\|Ga0062593_100283100	All Organisms → cellular organisms → Bacteria → Acidobacteria	1398	Open in IMG/M
3300004114\|Ga0062593_100439227	All Organisms → cellular organisms → Bacteria → Acidobacteria	1184	Open in IMG/M
3300004114\|Ga0062593_100466373	Not Available	1157	Open in IMG/M
3300005093\|Ga0062594_100092584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1768	Open in IMG/M
3300005093\|Ga0062594_101277578	Not Available	734	Open in IMG/M
3300005288\|Ga0065714_10154118	All Organisms → cellular organisms → Bacteria → Acidobacteria	1088	Open in IMG/M
3300005290\|Ga0065712_10068834	All Organisms → cellular organisms → Bacteria	8851	Open in IMG/M
3300005293\|Ga0065715_10102480	All Organisms → cellular organisms → Bacteria	3111	Open in IMG/M
3300005328\|Ga0070676_11523945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. MA-N2	515	Open in IMG/M
3300005330\|Ga0070690_101199402	Not Available	605	Open in IMG/M
3300005335\|Ga0070666_10137612	All Organisms → cellular organisms → Bacteria	1700	Open in IMG/M
3300005338\|Ga0068868_102030421	Not Available	546	Open in IMG/M
3300005343\|Ga0070687_100869076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae → Brachybacterium → Brachybacterium phenoliresistens	644	Open in IMG/M
3300005354\|Ga0070675_100880643	Not Available	820	Open in IMG/M
3300005355\|Ga0070671_102046355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. CNH287	510	Open in IMG/M
3300005356\|Ga0070674_100043831	All Organisms → cellular organisms → Bacteria	3046	Open in IMG/M
3300005366\|Ga0070659_100440916	Not Available	1103	Open in IMG/M
3300005438\|Ga0070701_11050474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae → Brachybacterium → Brachybacterium phenoliresistens	571	Open in IMG/M
3300005441\|Ga0070700_100974238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. MA-N2	695	Open in IMG/M
3300005444\|Ga0070694_100363829	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300005456\|Ga0070678_100557363	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300005548\|Ga0070665_100215402	All Organisms → cellular organisms → Bacteria → Acidobacteria	1921	Open in IMG/M
3300005563\|Ga0068855_100064757	All Organisms → cellular organisms → Bacteria	4263	Open in IMG/M
3300005616\|Ga0068852_101161523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → Chelativorans xinjiangense	793	Open in IMG/M
3300005834\|Ga0068851_10484044	Not Available	740	Open in IMG/M
3300005840\|Ga0068870_10281403	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300005841\|Ga0068863_100400553	All Organisms → cellular organisms → Bacteria	1342	Open in IMG/M
3300005842\|Ga0068858_102172342	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	549	Open in IMG/M
3300005843\|Ga0068860_101036632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	839	Open in IMG/M
3300006577\|Ga0074050_10610525	Not Available	609	Open in IMG/M
3300006854\|Ga0075425_101369152	Not Available	801	Open in IMG/M
3300006881\|Ga0068865_100935464	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	756	Open in IMG/M
3300007076\|Ga0075435_101938670	Not Available	517	Open in IMG/M
3300009093\|Ga0105240_12219096	Not Available	569	Open in IMG/M
3300009174\|Ga0105241_10429442	All Organisms → cellular organisms → Bacteria → Acidobacteria	1164	Open in IMG/M
3300009176\|Ga0105242_11723130	Not Available	663	Open in IMG/M
3300009177\|Ga0105248_10041018	All Organisms → cellular organisms → Bacteria	5189	Open in IMG/M
3300009177\|Ga0105248_10096099	All Organisms → cellular organisms → Bacteria	3337	Open in IMG/M
3300009177\|Ga0105248_11841156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	687	Open in IMG/M
3300010371\|Ga0134125_10118211	All Organisms → cellular organisms → Bacteria	2951	Open in IMG/M
3300010373\|Ga0134128_10388187	All Organisms → cellular organisms → Bacteria	1559	Open in IMG/M
3300010375\|Ga0105239_11712664	Not Available	728	Open in IMG/M
3300010396\|Ga0134126_12446063	Not Available	568	Open in IMG/M
3300010400\|Ga0134122_10416447	Not Available	1191	Open in IMG/M
3300010401\|Ga0134121_11150156	All Organisms → cellular organisms → Bacteria → Acidobacteria	772	Open in IMG/M
3300012212\|Ga0150985_103922148	Not Available	763	Open in IMG/M
3300012212\|Ga0150985_107271906	All Organisms → cellular organisms → Bacteria	1469	Open in IMG/M
3300012212\|Ga0150985_111615829	All Organisms → cellular organisms → Bacteria → Acidobacteria	1371	Open in IMG/M
3300012895\|Ga0157309_10127680	Not Available	734	Open in IMG/M
3300012916\|Ga0157310_10359393	Not Available	592	Open in IMG/M
3300012958\|Ga0164299_10834506	Not Available	661	Open in IMG/M
3300013296\|Ga0157374_10119664	All Organisms → cellular organisms → Bacteria	2540	Open in IMG/M
3300013296\|Ga0157374_10319953	All Organisms → cellular organisms → Bacteria	1537	Open in IMG/M
3300013296\|Ga0157374_11255264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio → unclassified Bdellovibrio → Bdellovibrio sp. NC01	762	Open in IMG/M
3300013306\|Ga0163162_10319858	All Organisms → cellular organisms → Bacteria → Acidobacteria	1684	Open in IMG/M
3300013308\|Ga0157375_10861498	All Organisms → cellular organisms → Bacteria → Proteobacteria	1052	Open in IMG/M
3300014314\|Ga0075316_1006592	All Organisms → cellular organisms → Bacteria → Acidobacteria	2060	Open in IMG/M
3300014745\|Ga0157377_10613355	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300014968\|Ga0157379_11783766	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300014969\|Ga0157376_10223770	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M
3300015371\|Ga0132258_10295224	All Organisms → cellular organisms → Bacteria	3983	Open in IMG/M
3300015371\|Ga0132258_11615542	All Organisms → cellular organisms → Bacteria → Acidobacteria	1636	Open in IMG/M
3300015372\|Ga0132256_100096346	All Organisms → cellular organisms → Bacteria	2872	Open in IMG/M
3300015373\|Ga0132257_100073056	All Organisms → cellular organisms → Bacteria → Acidobacteria	3886	Open in IMG/M
3300015373\|Ga0132257_100278447	All Organisms → cellular organisms → Bacteria	2005	Open in IMG/M
3300015373\|Ga0132257_104518139	Not Available	506	Open in IMG/M
3300025165\|Ga0209108_10328454	Not Available	762	Open in IMG/M
3300025907\|Ga0207645_10645932	Not Available	719	Open in IMG/M
3300025925\|Ga0207650_10451418	Not Available	1070	Open in IMG/M
3300025930\|Ga0207701_10000538	All Organisms → cellular organisms → Bacteria	39390	Open in IMG/M
3300025936\|Ga0207670_11789709	Not Available	522	Open in IMG/M
3300025937\|Ga0207669_10663035	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300025941\|Ga0207711_10226718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1711	Open in IMG/M
3300025941\|Ga0207711_10538032	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300025949\|Ga0207667_10213266	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1979	Open in IMG/M
3300026023\|Ga0207677_11835519	Not Available	563	Open in IMG/M
3300026035\|Ga0207703_11696049	Not Available	608	Open in IMG/M
3300026041\|Ga0207639_11987866	Not Available	542	Open in IMG/M
3300026075\|Ga0207708_10206457	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1569	Open in IMG/M
3300026075\|Ga0207708_10882412	Not Available	773	Open in IMG/M
3300026088\|Ga0207641_10072460	All Organisms → cellular organisms → Bacteria	2967	Open in IMG/M
3300026089\|Ga0207648_10993016	Not Available	786	Open in IMG/M
3300026121\|Ga0207683_10294804	All Organisms → cellular organisms → Bacteria → Acidobacteria	1483	Open in IMG/M
3300026121\|Ga0207683_10668891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	962	Open in IMG/M
3300026121\|Ga0207683_10769742	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300026121\|Ga0207683_11866865	Not Available	550	Open in IMG/M
3300028380\|Ga0268265_11722307	Not Available	633	Open in IMG/M
3300028380\|Ga0268265_12541670	Not Available	518	Open in IMG/M
3300031231\|Ga0170824_107804251	Not Available	525	Open in IMG/M
3300031562\|Ga0310886_10226883	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300031562\|Ga0310886_10369589	Not Available	838	Open in IMG/M
3300031913\|Ga0310891_10350987	Not Available	529	Open in IMG/M
3300031944\|Ga0310884_10114912	All Organisms → cellular organisms → Bacteria	1340	Open in IMG/M
3300031944\|Ga0310884_10821206	Not Available	570	Open in IMG/M
3300031995\|Ga0307409_102579916	Not Available	537	Open in IMG/M
3300032013\|Ga0310906_10238768	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300032013\|Ga0310906_11161637	Not Available	560	Open in IMG/M
3300032075\|Ga0310890_10716280	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300032157\|Ga0315912_10000239	All Organisms → cellular organisms → Bacteria	117047	Open in IMG/M
3300033475\|Ga0310811_10841982	All Organisms → cellular organisms → Bacteria → Acidobacteria	844	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	60.75%
Environmental	Environmental	39.25%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	60.75%
Terrestrial	Environmental → Terrestrial	39.25%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	39.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	31.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.82%
Loam	Environmental → Terrestrial → Soil → Loam	10.28%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	10.28%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.28%
Soil	Host-Associated → Plants → Rhizoplane → Soil	4.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	10.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.28%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	4.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	4.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.80%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.80%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005288	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014314	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D2	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1005856963	3300000364	Soil	MIRSLVLFVHIAGVLALFVGLALEAFGVESVRKAAPRISGIAVALTVLSGFYLGARFGVLRDDWMRASYGGIVVMAVAGALARRSEALLRISLRVRTAFGLAVVFLMIAKPDAVVSXVVLGLAXGASMLVALPIGFKQPSGLSSSTRA*
INPhiseqgaiiFebDRAFT_1005864373	3300000364	Soil	MIRSLVLFVHIAGVLALFVGLALEAFGVESVRKAAPRISGIAVALTVLSGFYLGARFGVLRDDWMRASYGGIVVMAVAGALARRSEALLRISLRVRTAFGLAVVFLMIAKPDAVVSLVVLGLALGASMLVALPIGLRQPSGLSTSTGA*
JGI10216J12902_1080501421	3300000956	Soil	MFRSLVLFIHITGVLTMFAGLALEAFGVESARRAVPRMSGIAVALTVLSGFYLGARFSVLGDDWMRASYGGIVVMMAAGALARRSDKLRRISVRVRAAFGLAVVFLMIAKPDAVVSLVVLGVALGVSTLVALPIGLAQPGGLSSTGA*
C688J14111_102814571	3300001305	Soil	ALALDAFAVEPTGRAPRMFGLAGPLTLLSGLYMGARFGVLGDAWMCASYAAIVMMAAAGPLARRSDALRQLSLRLRVAIGLAIVFLMVAKPDAVVSLAVLGLALGVSTLVGLPIGFKEPSGLSSTEA*
C688J18823_100679382	3300001686	Soil	MIRSLVLFVHITGVLTMXAALALDAFAVEPTGRAPRMFGLAGPLTLLSGLYMGARFGVLGDAWMCASYAAIVMMAAAGPLARRSDALRQLSLRLRVAIGLAIVFLMVAKPDAVVSLAVLGLALGVSTLVGLPIGFKEPSGLSSTEA*
C688J35102_1204240702	3300002568	Soil	MIGSFVLFVHITGVLTMSAALALEAFGVEPTGAAPRIFGIAGPLTLLSGLYMGARFGVLGVGWMLASYGAIAVMAAAGPFARRSDALRQLSLRVRAAFGLAIVFLMVAKPDAMVSLVVLGLALGVSILVGLPIGFKQPSGLSSTEA*
Ga0062593_1002831003	3300004114	Soil	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMIAKPDVVVSLVVLGLALGVSMLVALPIGLRHPDPREASSFRRRAGQPSQAR*
Ga0062593_1004392273	3300004114	Soil	MFRSLVLFIHITGVLTMFAGLALEAFGVESARRAAPRISGIAAALIVLSGFYLGARFGVLGDDWMRASYGAIVVMAAAGPLARRSHALRRISVRVRAAFGLAVVFLMIAKPDAVVSLVVFALALGVSTLVGLPIGLKQPSGLSSTRA*
Ga0062593_1004663731	3300004114	Soil	IMIRSLVLFVHITGVLTMFAGLALEAFGVESTGKATPRIFGIAVPLTLLSGFYLGARFGVLGDAWMRASYGAIVVMAAAGPLARRSAGLRQISLRVRAAFGLAVVFLMIAKPDASVSLVVFGLALGVSTLVALPVGLKQPSGLSSPGVRL*
Ga0062594_1000925841	3300005093	Soil	MIRSLVLFVHITGVLTMFAGLALEAFGAEPSGRAAPRIFGLAMPLTLLSGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAIVFLMVAKPDAMLSVVVLGLALGISMLVGVPIGLKQQTDLSSTEA*
Ga0062594_1012775781	3300005093	Soil	MFRSLVLFIHITGVLTMFAGLALEAFGVESARRAAPRISGIAVVLTVVSGFYLGARFGVLGDDWMRASYGAIAVMAAAGPLARRSHALRRISVRVRGAFGLAVVFLMIAKPDAVVSLVVFALALGVSTLVGLPIGLKQPSGLSSTRA*
Ga0065714_101541183	3300005288	Miscanthus Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMIAKPDVVVSLVVLGLALGVSMLVALPIGLRHPDPREAPSFR
Ga0065712_100688347	3300005290	Miscanthus Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMIAKPDVVVSLVVLGLALGVSMLVALPIGLRHPDPREASSFRRRAGQPS*
Ga0065715_101024803	3300005293	Miscanthus Rhizosphere	MIRSLALFVHITGVLAMFAAMALETLGAETAAKATSRMSGIGAALTLLSGFYLGARFGVLGDDWMRASYGGIVAMMAAGMLARRWDTLRRTSLRVRAAFGLAVVFLMIAKPDAVASVVVLGLAFGVSTLVALPLGLTHPSGLSSNQSVRP*
Ga0070676_115239451	3300005328	Miscanthus Rhizosphere	SLVLFIHITGVLTMFAGLAVEAFGVESARRAAPRISGIAVVLTVVSGFYLGARFGVLGDDWMRASYGAIAVMAAAGPLARRSHALRRISVRVRGAFGLAVVFLMIAKPDAVVSLVVFALALGVSTLVGLPIGLKQPSGLSSTRA*
Ga0070690_1011994021	3300005330	Switchgrass Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMIAKPDVVVSLVVLGLALGV
Ga0070666_101376123	3300005335	Switchgrass Rhizosphere	VIRSLVLFVHITAVLTMFAGLALEAFAGQPAGKAPPRVFGLAAPLAVLSGFYLGARFGVLANDWMRASYGGIVAMIAAGALAHRSEALRRISLWARAAFGLAVVFLMTAKPDTVVSLVVLGLAFGVSMVVALSIGLKEPSGLSST
Ga0068868_1020304211	3300005338	Miscanthus Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMIAKPDVVVSLVVLGLALGVSMLLALPIGLRHPDPREASSFR
Ga0070687_1008690761	3300005343	Switchgrass Rhizosphere	MIRSLVLFVHITGVLTMFAGLALEAFGAASSGRAAPRIFGLAVPLTLLSGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAVVFLMVAKPDAMLSVVVLGLALGISMLVGVPIGLKQQTDLSSTEA*
Ga0070675_1008806431	3300005354	Miscanthus Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSNAMRRISLGVRAAFGLAVVFLMIAKPDVVVSLVVLGLALGVSMLVALPIGLRHPDPREASSFRRRAGQPS*
Ga0070671_1020463551	3300005355	Switchgrass Rhizosphere	MIRSLVLFVHITGVLTMFAGLALEAFGAEPSGRAAPRIFGLAMPLTLLSGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAVVFLMVAKPDAMLSVVVLGLALGISM
Ga0070674_1000438312	3300005356	Miscanthus Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGADASGRATPRMFGLAVPLTVLSGFYLGARFGVLGNDWMRASYGGIVVIAAAGALARRSEALRRVSLRVRTAFGLAVVFLMIAKPDALVSLVVLGLALTLSLLGALPIGLRRPGGLYSTEA*
Ga0070659_1004409162	3300005366	Corn Rhizosphere	MIVQSLVLFVHVVGVLGLFAGLALEAFGIERARKAVPRLSGIAVALTVVSGFYLGARFGVLGDDWMRASYGAIVLMAAAGALARRSEALMRISLQVRTALGLVVVFLMIAKPDAVVSVTVIGLALVGATLKLPRRTRVHFSHV*
Ga0070701_110504741	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	RQKKRFIMIRSLVLFVHITGVLTMFAGLALEAFGAEPSGRAAPRIFGLAMPLTLLSGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAIVFLMVAKPDAMLSVVVLGLALGISMLVGVPIGLKQQTDLSSTEA*
Ga0070700_1009742381	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MFRSLVLFIHITGVLTMFAGLAVEAFGVESARRAAPRISGIAVVLTVVSGFYLGARFGVLGDDWMRASYGAIAVMAAAGPLARRSHALRRISVRVRGAFGLAVVFLMIAKPDAVVSLVVFALALGVSTLVGLPIGLKQPGGLSS
Ga0070694_1003638293	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MIRSLVLFVHITGVLTMFAGLALEAFGAEPSGRAAPRIFGLAMPLTLLSGLYMGARFGVLADAWMYASYGAIVVMAATGPLARRSDALRQLSLRARATFGLAIVFLMVAKPDAMLSVVVLGLALGISMLVGVPIGLKQQTDLSSTEA*
Ga0070678_1005573631	3300005456	Miscanthus Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATARISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDALRRISLRVRAAFGLAVVFLMIAKPDAVVSLVVFALALGVSTLVGLPIGLKQPSGLSSTRA*
Ga0070665_1002154022	3300005548	Switchgrass Rhizosphere	MFRSLVLFIHITGVLTMCAGLALEAFGVASARRAAPRISGIAAGLTVLSGFYLGARFGVLGDDWMRASYGGIVVMMAAGALARRSDTLRRISMRVRAAFGLAVVFLMIAKPDAVVSFVVLGLALGVSTLVALPIGLAQPGDLSSTGA*
Ga0068855_1000647575	3300005563	Corn Rhizosphere	MIVQSLVLFVHVVGVLGLFAGLALEAFGIERARKAVPRLSGIAVALTVVSGFYLGARFGVLGDDWMRASYGAIVLMAAAGALARRSEALMRISLQVRTALGLVVVFLMIAKPDAVVSVTVIGLALVGATLKLPRRRRVHFSHV*
Ga0068852_1011615231	3300005616	Corn Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMMAAGALARRSDTLRRISMRVRAAFGLAVVFLMIAKPDAVVSFVVLGLALGVSTLVALPIGLAQPGDLS
Ga0068851_104840441	3300005834	Corn Rhizosphere	MIRSLVLFVHITGVLTMFAGLALEAFGAEPSGRAAPRIFGLAMPLTLLSGLYMGARFGVLADAWMYASYGAIVVMAATGPLARRSDALRQLSLRARATFGLAIVFLMVAKPDAMVSLVVLGLALGISMLVGVPIGLKQQTDLSST
Ga0068870_102814033	3300005840	Miscanthus Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMIAKPDAVVSLVVFALALGVSTLVGLPIGLKQPSGLSSTRA*
Ga0068863_1004005533	3300005841	Switchgrass Rhizosphere	MFRSLVLFIHITGVLTMFAGLALEAFGVESARRAAPRISGIAAALIVLSGFYLGARFGVLGDDWMRASYGAIVVMAAAGPLARRSHALRRISVRVRGAFGLAVVFLMIAKPDAVVSFVVFALALGVSTLVGLPIGLKQPSGLSSTRA*
Ga0068858_1021723421	3300005842	Switchgrass Rhizosphere	TGVLTMCAGLALEAFGVASARRAAPRISGIAAGLTVLSGFYLGARFGVLGDDWMRASYGGIVVMMAAGALARRSDTLRRISMRVRAAFGLAVVFLMIAKPDAVVSFVVLGLALGVSTLVALPIGLAQPGDLSSTGA*
Ga0068860_1010366321	3300005843	Switchgrass Rhizosphere	RGKPSCLRGRCFLTAVAVLPIAGCSRQKKRFIMIRSLVLFVHITGVLTMFAGLALEAFGAEPSGRAAPRIFGLAMPLTLLSGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAIVFLMVAKPDAMLSVVVLGLALGISMLVGVPIGLKQQTDLSSTEA*
Ga0074050_106105251	3300006577	Soil	MIRSLVLFVHIAGVLALFAGLALEAFGVEAARKAAPRISGIAMALTVVSGFYLGRRLGVLRDEWMLASYGGIVVMAAAGALARRSDTLLRISLRVRTAFGLAVVFLMIAKPDAVAALVVLSLALVGSALVSLPTGQGQRVGLSRA*
Ga0075425_1013691522	3300006854	Populus Rhizosphere	MTRSLVLFVHITGVLTMFAGLALEAFGAEPSGRAAPRIFGLAMPLTLLCGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAIVFLMVAKPDARVSVVVLGLALGISMLVGLPIGLKQQTRLSSTEA*
Ga0068865_1009354643	3300006881	Miscanthus Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATARISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMIAKPDVVVSLVVLGLALGASMLVALPIGLTHPDRREAPSPRRAGQPAAGR*
Ga0075435_1019386701	3300007076	Populus Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMIAKPDVVVSLVVLGLALGVSMLVALPIGLRHPDPREAS
Ga0105240_122190962	3300009093	Corn Rhizosphere	MIRSLVLFVHITGVLTMFAGLALEAFGAESSGRAAPRIFGLAVPLTLLSGLYMGARFGVLADAWMYASYGAIVVMAATGPLARRSDALRQLSLRARATFGLAIVFLMVAKPDAMVSLVVLGLALGISMLVGLPIGLKQQTRLSSTEA*
Ga0105241_104294422	3300009174	Corn Rhizosphere	MFRSLVLFIHITGVLTMFAGLAVEAFGVESARRAAPRISGIAVVLTVVSGFYLGARFGVLRDDWMRASYGAIAVMAAAGPLARRSHALRRISVRVRGAFGLAVVFLMIAKPDAVVSLVVFALALGVSTLVGLPIGLKQPGGLSSTRA*
Ga0105242_117231301	3300009176	Miscanthus Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATARISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDALRRISLRVRAAFGLAVVFLMIAKPDALVSLVVLGLALTLSLLGALPIGLRRPGGLYSTEA
Ga0105248_100410184	3300009177	Switchgrass Rhizosphere	MIRSLVLFAHITGVLLMFAGLALEAFGGRSSGKAMPRIFGLAVPLTVLSGLYLGARFGVLGNEWMLASYAGILVIAAAGALARRSDALRRISLRVRTAFGLAVVFLMIAKPDTVVSLVVLGVATGVSLFVALPIGLKEPSGLSSTEA*
Ga0105248_100960991	3300009177	Switchgrass Rhizosphere	RFIMIRSLVLFVHITGVLTMFAGLALEAFGDESSGKAAPRVFGLAVPLTVLSGFYLGARVGVLGNEWMRASYGGIVVMAAAGTLARGSDALRRISLRVRAAFGLAVVFLMIAKPDAVGSLVVLGLALGVSMLVALPVGLRQPRGLSSTEA*
Ga0105248_118411561	3300009177	Switchgrass Rhizosphere	LEAFGAESSGRATPRIFGLAVPLTLLSGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAIVFLMVAKPDAMLSVVVLGLALGISMLVGVPIGLKQQTRLSSTEA*
Ga0134125_101182111	3300010371	Terrestrial Soil	MIRSLVLFVHITGVLTMFAGLALEAFGAEPSGRAAPRIFGLAMPLTLLSGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAIVFLMVAKPDAMLSVVVLGLALGISMLVGVPIGLKQQTDL
Ga0134128_103881871	3300010373	Terrestrial Soil	MTECVCDSDIRWRALSSKQQGPATRCHTSSWQAVLFTRPLLPDSGRGTANRRLTRQKKRFIMIRSLVLFVHITGVLTMFAGLALEAFGAEPSGRAAPRIFGLAMPLTLLSGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAVVFLMVAKPDAMLSVVVLGLALGISMLVGVPIGLKQQTDLSSTEA*
Ga0105239_117126641	3300010375	Corn Rhizosphere	MIRSLVLFVHITGVLTMFAGLALEAFGAESSGRAAPRIFGLAMPLTLLSGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAIVFLMVAKPDAMVSLVVFGLALGISMLVGLPIGLKQQTRLSSTEA*
Ga0134126_124460631	3300010396	Terrestrial Soil	MIRSLVLFVHITGVLTMFAGLALEAFGAEPSGRAAPRIFGLAMPLTLLSGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAVVFLMVAKPDAMLSVVVLGLALGISML
Ga0134122_104164471	3300010400	Terrestrial Soil	TRCHTSSWQAVLFTRPLLPDSGRGTANRRLTRQKKRFIMIRSLVLFVHITGVLTMFAGLALEAFGAEPSGRAAPRIFGLAMPLTLLSGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAVVFLMVAKPDAMLSVVVLGLALGISMLVGVPIGLKQQTDLSSTEA*
Ga0134121_111501561	3300010401	Terrestrial Soil	MIRSLVLFVHITGVLTMFAGLALEAFGAEPSGRAAPRIFGLAMPLTLLSGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAIVFLMVAKPDAMLSVVVLGLALGI
Ga0150985_1039221482	3300012212	Avena Fatua Rhizosphere	SPAEEEVLMIGSFVLFVHITGVLTMSAALALEAFGVEPIGAAPRIFGIAGPLTLLSGLYMGARFGVLGVGWMLASYGAIAVMAAAGPFARRSDALRQLSLRVRAAFGLAIVFLMVAKPDAMVSLVVLGLALGVSILVGLPIGFKQPSGLSSTEA*
Ga0150985_1072719062	3300012212	Avena Fatua Rhizosphere	MIRSLVLFVHITGVLMMFAGLALEAFGVERPGKAAARMSGIAGPLTLVSGFYLGARFGVLADGWMLASYGAIVVMAAAGTLARRSDALRQVSLRLRGSFSLAIVFLMIAKPDAVVSLVVFGVAVGVSMLVALPIELEQPRRLSTDA*
Ga0150985_1116158292	3300012212	Avena Fatua Rhizosphere	MIRSLVLFVHITGVLTMFAALALDAFDVEPTGRARMFALAGPLTLLSGLYMGARFGVLGDAWMCASYAAIVMMAAAGPLARRSDALRQLSLRARVAFGLAIVFLMVAKPDAVVSLAVLGLALGVSTLVGLSIGFKQPSGLSSTEA*
Ga0157309_101276801	3300012895	Soil	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMIAKPDVVVSLVVLGLALGVSMLVALPIGLRHPDPREASSFRRRAGQ
Ga0157310_103593931	3300012916	Soil	MIRSLVLFVHITGVLTMFAGLALEAFGVESTGKATPRIFGIAVPLTLLSGFYLGARFGVLGDAWMRASYGAIVVMAAAGPLARRSAGLRQISLRVRAAFGLAVVFLMIAKPDASVSLVVFGLALGVSTLVALPVGLKQPSGLSSPG
Ga0164299_108345061	3300012958	Soil	MIRSLVLFAHITGVLMMFAGIALEAFGGESVGTATSRISKIAVALTMLPGFYLGARFGVLGNVWMRASYGAIVVMMAANTLARRSDALRQISLRVRAAFGLAVVFLMIAKPDAVVSFVVLGLALGVSTRVALPIGLRQSSGLSSTGA*
Ga0157374_101196644	3300013296	Miscanthus Rhizosphere	MIRSLVLFAHITGVLLMFAGLALEAFGGRSSGKAMPRIFGLAVPLTVLSGLYLGARFGVLGNEWMLASYAGILVIAAAGALARRSDALRRISLRVRTAFGLAVVFLMIAKPDTVVSLVVLGVATGVSLFVALPIGLKEP
Ga0157374_103199532	3300013296	Miscanthus Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMIAKPDVVVSLVVLGLALGVSMLLALPIGLRHPDPREASSFRRRAGQPS*
Ga0157374_107307571	3300013296	Miscanthus Rhizosphere	MIRSLVLFTHVVGVLALFVGLGLEWIGLNGIRRSATPAEALTWLRLVVRVPRVSGIAVAAIVVSGFYLGGRIGVLGNEWMRASYGAIVLMAAAGALARRSEALMRISLQVRTALGLVVVFLMIAKPDAVVS
Ga0157374_112552642	3300013296	Miscanthus Rhizosphere	RCSWIRTATGCSYEKAVRSTAEERVIVIRSLVLFVHITGVLMMFAGLALEAFGGESSGKGTPRSFGLAVPLTVLSGFYMGARFGVLGSEWMLASYAGIVVIAAAGAFARRSDALQRISLRVRTAFALAVVFLMIAKPDTAVSLAVLGLALGVSLLVALPIGLRQPSGLSSTRA*
Ga0163162_103198581	3300013306	Switchgrass Rhizosphere	TGVLMMFAGLALEAFGGESSGKGTPRSFGLAVPLTVLSGFYMGARFGVLGSEWLLASYAGIVVIAAAGAFARRSDALRRISLRVRTAFGLAVVFLMIAKPDTAVSLAVLGLALGVSLLVALPIGLRQPSGLSSTEA*
Ga0157375_108614982	3300013308	Miscanthus Rhizosphere	MIRSLVLFAHITGVLLMFAGLALEAFGGRSSGKAMPRIFGLAVPLTVLSGLYLGARFGVLGNEWMLASYAGILVIAAAGAFARRSDALRRISLRVRTAFGLAVVFLMIAKPDTAGSLVVLGLALGVSLLVALPIGLRQPSRLSSNQA*
Ga0075316_10065923	3300014314	Natural And Restored Wetlands	MIRALILFIHVTGVLAIFAGLALEAFGGEAAGKATPRISGIGAALTVLSGFYLGGRVGVLGDGWMRASYGAIVVMMAAGTLARRTNALRRVLLRVRAAFGLAVVFLMIAKPDAVVSAVVFGLAVGVSTLVALPIGLKQTRGLSSAGA*
Ga0157377_106133552	3300014745	Miscanthus Rhizosphere	LEAFGVESARRAAPRISGIAAALIVLSGFYLGARFGVLGDDWMRASYGAIVVMAAAGPLARRSHALRRISVRVRAAFGLAVVFLMIAKPDAVVSLVVFALALGVSTLVGLPIGLKQPSGLSSTRA*
Ga0157379_117837662	3300014968	Switchgrass Rhizosphere	EAFGGRSSGKAMPRIFGLAVPLTVLTGLYLGARFGVLGNEWMLASYAGIVVIAAAGAFARRSDALRRISLRVRTAFGLAVVFLMIAKPDTAVSLAVLGLALGVSLLVALPIGLRQPSGLSSNQP*
Ga0157376_102237702	3300014969	Miscanthus Rhizosphere	MIRSLVLFVHITGVLTMFAGLALEAFGVELSGKVTPRVFGLAVPLTVLSGFYLGARVGVLGNEWMRASYGGIVVMAAAGTLARRSDALRRISLRVRAAFGLAVVFLMIAKPDAVGSLVVLGLALGVSMLVALPVGLRQPRGLSSTEA*
Ga0132258_102952245	3300015371	Arabidopsis Rhizosphere	MFRSLVLFIHITGVLTMFAGLALEAFGVESARRAAPRISGIAVVLTVVSGFYLGARFGVLGDDWMRASYGAIAVMAAAGPLARRSHALRRISVRVRAAFGLAVVFLMIAKPDAVVSLVVFALALGVSTLVGLPIGLKQPSGLSSTRA*
Ga0132258_116155423	3300015371	Arabidopsis Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMISKPDVVVSLVVLGLALGVSMLVALPIGLRHPDPREASSFRRRAGQPS*
Ga0132256_1000963463	3300015372	Arabidopsis Rhizosphere	MFAGLALEAFGGESAGKATPRFFGLAAPVTLLSGFYLGARFGVLANEWMRASYGGIFAMIAAGALAQRSEALRRLSLRARAAFGLAVVFLMTAKPDAVVSLVVLGLAFGVSMLVALPIGLKQPSGLSSTRA*
Ga0132257_1000730567	3300015373	Arabidopsis Rhizosphere	MIRSLVLFAHITGVLMMFAGIALEAFGGESVGTATSRISKIAVALTMLPGFYLGARFGVLGNVWMRASYGAIVVMMAANTLARRSDALRQVSLRVRAAFGLAVVFLMIAKPDAVVSFVVLGLALGVSTLVALPIGLRQSSGLSSTGA*
Ga0132257_1002784472	3300015373	Arabidopsis Rhizosphere	MFAGLALEAFGGESAGKATPRFFGLAAPVTLLSGFYLGARFGVLANEWMRASYGGIFAMIAAGTLAQRSEALRRLSLRARAAFGLAVVFLMTAKPDAVVSLVVLGLAFGVSMLVALPIGLKQPSGLSSTRA*
Ga0132257_1045181391	3300015373	Arabidopsis Rhizosphere	KRSIMFRSLVLFIHITGVLTMFAGLALEAFGVESARRAAPRISGIAAALIVLSGFYLGARFGVLGDDWMRASYGAIVVMAAAGPLGRRSHALRRISVRVRAAFGLAVVFLMIAKPDAVVSLVVFALALGVSTLVGLPIGLKQPSGLSSTRA*
Ga0209108_103284541	3300025165	Soil	KKRSIMIRSLVLFVHITGVLAMFAGLALEAFGAEAAGKATPRISGIGAALTVLSGFYLGARFGVLGDDWMRASYGGIVVMMAAGALARRSDTLRRISLRVRAAFGLAVVFLMIAKPDAVMSLVVLGLALGVSTLVALPIRLTQPSGLSSTGARGCEVR
Ga0207645_106459322	3300025907	Miscanthus Rhizosphere	VNRRPLQVVTGLLGIIPVVTGVLTMFAGLALEAFGAEPSGRAAPRIFGLAMPLTLLSGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAVVFLMVAKPDAMLSVVVLGLALGISMLVGVPIGLKQQTDLSSTEA
Ga0207650_104514182	3300025925	Switchgrass Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMIAKPDVVVSLVVLGLALGVSMLLALPIGLRHPDPREASSFRRRAGQPS
Ga0207701_1000053831	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMIAKPDVVVSLVVLGLALGVSMLVALPIGLRHPDPREASSFRRRAGQPSQAR
Ga0207670_117897091	3300025936	Switchgrass Rhizosphere	MFRSLVLFIHITGVLTMFAGLALEAFGVESARRAAPRISGIAVVLTVVSGFYLGARFGVLGDDWMRASYGAIAVMAAAGPLARRSHALRRISVRVRGAFGLAVVFLMIAKPDAVVSLVVFALALGVSTLVGLPIGLKQP
Ga0207669_106630351	3300025937	Miscanthus Rhizosphere	ALEAFGADASARATPRMFGLAVPLTVLSGFYLGARFGVLGNDWMRASYGGIVVIAAAGALARRSEALRRVSLRVRTAFGLAVVFLMIAKPDALVSLVVLGLALTLSLLGALPIGLRRPGGLYSTEA
Ga0207711_102267182	3300025941	Switchgrass Rhizosphere	MIRSLVLFVHITGVLTMFAGLALEAFGVELSGKVTPRVFGLAVPLTVLSGFYLGARVGVLGNEWMRASYGGIVVMAAAGTLARGSDALRRISLRVRAAFGLAVVFLMIAKPDAVGSLVVLGLALGVSMLVALPVGLRQPRGLSSTEA
Ga0207711_105380322	3300025941	Switchgrass Rhizosphere	MIRSLVLFAHITGVLLMFAGLALEAFGGRSSGKAMPRIFGLAVPLTVLSGLYLGARFGVLGNEWMLASYAGILVIAAAGALARRSDALRRISLRVRTAFGLAVVFLMIAKPDTVVSLVVLGVATGVSLFVALPIGLKEPSGLSSTEA
Ga0207667_102132662	3300025949	Corn Rhizosphere	MIVQSLVLFVHVVGVLGLFAGLALEAFGIERARKAVPRLSGIAVALTVVSGFYLGARFGVLGDDWMRASYGAIVLMAAAGALARRSEALMRISLQVRTALGLVVVFLMIAKPDAVVSVTVIGLALVGATLKLPRRRRVHFSHV
Ga0207677_118355191	3300026023	Miscanthus Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMIAKPDVVVSLVVLGLALGVSMLLALPIGLRHPDPREASSFRRRAG
Ga0207703_116960491	3300026035	Switchgrass Rhizosphere	FIHITGVLTMCAGLALEAFGVASARRAAPRISGIAAGLTVLSGFYLGARFGVLGDDWMRASYGGIVVMMAAGALARRSDTLRRISMRVRAAFGLAVVFLMIAKPDAVVSFVVLGLALGVSTLVALPIGLAQPGDLSSTGA
Ga0207639_119878661	3300026041	Corn Rhizosphere	MIRSFVLFVHITGVLTMFAGLALEAFGAEPSGRAAPRIFGLAMPLTLLSGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAVVFLMVAKPDAMLSVVVLGLAL
Ga0207708_102064571	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VLFTRPLLPDSGRGTANRRLTRQKKRFIMIRSLVLFVHITGVLTMFAGLALEAFGAEPSGRAAPRIFGLAMPLTLLSGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAIVFLMVAKPDAMLSVVVLGLALGISMLVGVPIGLKQQTDLSSTEA
Ga0207708_108824122	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MFRSLVLFIHITGVLTMFAGLAVEAFGVESARRAAPRISGIAVVLTVVSGFYLGARFGVLGDDWMRASYGAIAVMAAAGPLARRSHALRRISVRVRGAFGLAVVFLMIAKPDAVVSLVVFALALGVSTLVGLPIGLKQPGGLSSTRA
Ga0207641_100724602	3300026088	Switchgrass Rhizosphere	MFRSLVLFIHITGVLTMFAGLALEAFGVESARRAAPRISGIAAALIVLSGFYLGARFGVLGDDWMRASYGAIVVMAAAGPLARRSHALRRISVRVRGAFGLAVVFLMIAKPDAVVSFVVFALALGVSTLVGLPIGLKQPSGLSSTRA
Ga0207648_109930161	3300026089	Miscanthus Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMIAKPDVVASLVVLGLALGVSMLVALPIGL
Ga0207683_102948042	3300026121	Miscanthus Rhizosphere	MIRSLVLFVHITGVLAMFAGLALEAFGAGASGKATPRMFGLAVPLTVLSGFYLGARFGVLGNDWMRASYGGIVVIAAAGALARRSEALRRVSLRVRTAFGLAVVFLMIAKPDALVSLVVLGLALTLSLLGALPIGLRRPGGLYSTEA
Ga0207683_106688911	3300026121	Miscanthus Rhizosphere	MIRSLVLFVHITGVLTMFAGLALEAFGAEPSGRAAPRIFGLAMPLTLLSGLYMGARFGVLADAWMYASYSAIVVMAATGPLARRSDALRQLSLRARATFGLAIVFLMVAKPDAMLSVVVLGLALGISMLVGVPIGLKQQTDLSSTEA
Ga0207683_107697422	3300026121	Miscanthus Rhizosphere	GLALEAFGAESAAKATARISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDALRRISLRVRAAFGLAVVFLMIAKPDAVVSLVVFALALGVSTLVGLPIGLKQPSGLSSTRA
Ga0207683_118668651	3300026121	Miscanthus Rhizosphere	TANRRRRRQKKRFLVIRSLVLFVHITGVLTMFAGLALEAFGGESAGKATTRFFGLAAPVTLLSGFYLGSRFGVLANDWMRASYGGIFAMIAAGTLAQRSEALRRLSLRARAAFGLAVVFLMTAKPDTVVSLVVLGLAFGVSMVVALSIGLKEPSGLSSTRA
Ga0268265_117223072	3300028380	Switchgrass Rhizosphere	EAFGAESAAKATSRISGIGVALTVLSGFYLGARFGVLGEEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMIAKPDVVVSLVVLGLALGVSMLVALPIGLRHPDPREASSFRRRAGQPSQAR
Ga0268265_125416701	3300028380	Switchgrass Rhizosphere	KRSIMFRSLVLFIHITGVLTMCAGLALEAFGVESARRAAPRISGIAAALTVLSGFYLGARFGVLGDDWMRASYGGIVVMMAAGALARRSDTLRRISMRVRAAFGLAVVFLMIAKPDAVVSFVVLGLALGVSTLVALPIGLAQPGDLSSTGA
Ga0170824_1078042511	3300031231	Forest Soil	MIRSLVLFVHITGVLMMCAGLALEAFGVESAGKATPRIFGLAAPLTVLSGFYLGARFGVLGDEWMRASYAAIVVMAAAGALARRSDALRRISLRVRAAFGLAVVFLMIAKPDALVSLVVLGLALGVSTLVALPVGLKLPSGLS
Ga0310886_102268831	3300031562	Soil	VIRSLVLFVHITGVLTMFAGLALEAFGGESAGKATPRFFGLAAPVTLLSGFYLGARFGVLANEWMRASYGGIFAMIAAGTLTQRSEALRRLSLRARAAFGLAVVFLMTAKPDAVVSLVVLGLAFGVSMLVALPIGLKQPSGLSSTRA
Ga0310886_103695891	3300031562	Soil	MIRSLVLFAHITGVLMMFAGIALEAFGGESVGTATSRISKIAVALTMLPGFYLGARFGVLGNVWMRASYGAIVVMMAANTLARRSDALRQISLRVRAAFGLAVVFLMIAKPDAVVSFVVLGLALGVSTLVALPIGLRQSSGLSSTGA
Ga0310891_103509872	3300031913	Soil	MIRSLVLFVHITGVLAMFAGLALEAFGAESAAKATPRISGIGVALTVLSGFYLGARFGVLGDEWLRASYGGIVVMAAAGTLARRSDAMRRISLGVRAAFGLAVVFLMIAKPDVVASLVVLGLALGV
Ga0310884_101149122	3300031944	Soil	VIRSLVLFVHITGVLTMFAGLALEAFGGESAGKATPRFFGLAAPVTLLSGFYLGARFGVLANEWMRASYGGIFAMIAAGTLTQRSEALRRLSLRARAAFGLAVVFLMTAKPDAVVSLVVLGLAFGVSMLVALPIGLKQPIGLSSTRA
Ga0310884_108212061	3300031944	Soil	MFRSLVLFIHITGVLTMFAGLAVEAFGVESARRAAPRISGIAVVLTVVSGFYLGARFGVLGDDWMRASYGAIAVMAAAGPLARRSHALRRISVRVRGAFGLAVVFLMIAKPDVVASLVVLGLALGVSMLVALPIGLRHPD
Ga0307409_1025799161	3300031995	Rhizosphere	MIRSLVLFLHITGVLTMFAGLALETVGVEPARRSTQRIFGMAVPLTLLSGLYMGVRFGVLGDGWMRASYAAIAVMAAAGPLARRSDALRQLSLRVRAAFGLGIVFLMVAKPDAVVSIVVLGLALGVSMLLS
Ga0310906_102387681	3300032013	Soil	VIRSLVLFVHITGVLTMFAGLALEAFGGESAGKATPRFFGLAAPVTLLSGFYLGARFGVLANEWMRASYGGIFAMIAAGTLTQRSEALRRLSLRARAAFGLAVVFLMTAKPDAVVSLVVLGLAFGVSMLVALPIGLRHPDPREASSFRRRAGQPS
Ga0310906_111616371	3300032013	Soil	MIRSLVLFAHITGVLMMFAGIALEAFGGESVGTATSRISKIAVALTMLPGFYLGARFGVLGNVWMRASYGAIVVMMAANTLARRSDALRQISLRVRAAFGLAVVFLMIAKPDAVVSFVVLGLALGVSTL
Ga0310890_107162802	3300032075	Soil	VIRSLVLFVHITGVLTMFAGLALEAFGGESAGKATPRFFGLAAPVTLLSGFYLGARFGVLANEWMRASYGGIFAMIAAGTLTQRSEALRRLSLRARAAFGLAVVFLMTAKPDAVVSLVVLGLAFGVSM
Ga0315912_1000023927	3300032157	Soil	VIRSLVLFVHVICVLTMFASLALEAFGGQPSGKATPRVFGLAAPLTVLSGFYLGARFGVLGNEWIRASYGGIVAMIAAGTLARRSEALRRISLSARAAFGLAVVFLMIAKPDGVVSLVVLGLALAVSILVAASIALRPPTSLSSTEA
Ga0310811_108419821	3300033475	Soil	MFRSLVLFIHITGVLTMFAGLALEAFGVESARRAAPRISGIAAALIVLSGFYLGARFGVLGDDWMRASYGAIVVMAAAGPLARRSHALRRISVRVRAAFGLAVVFLMIAKPDAVVSLVVFALALGVSTLVGLP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092005

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences