Metagenome / Metatranscriptome Family F092001

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092001
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	75 residues
Representative Sequence	MVDTKSIPKPGERWLSCPPYVLIAHVLGVEQVDGLPLVTYELQDDDGMVIERVDRAVLDDGWWRAFQPLRRRFG
Number of Associated Samples	94
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	47.66 %
% of genes near scaffold ends (potentially truncated)	25.23 %
% of genes from short scaffolds (< 2000 bps)	55.14 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.327 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.822 % of family members)
Environment Ontology (ENVO)	Unclassified (43.925 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.598 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.88% β-sheet: 34.31% Coil/Unstructured: 59.80%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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SCOP family	SCOP domain	Representative PDB	TM-score
b.61.7.1: Extracellular hemoglobin linker subunit, receptor domain	d2gtlo1	2gtl	0.67
b.61.7.1: Extracellular hemoglobin linker subunit, receptor domain	d2gtlo1	2gtl	0.67
b.34.1.2: C-terminal domain of transcriptional repressors	d6e55a1	6e55	0.66
b.34.1.2: C-terminal domain of transcriptional repressors	d6e55a1	6e55	0.66
b.61.7.1: Extracellular hemoglobin linker subunit, receptor domain	d2gtln1	2gtl	0.65
b.34.12.1: BAH domain	d3pt9a1	3pt9	0.65
b.61.7.1: Extracellular hemoglobin linker subunit, receptor domain	d2gtln1	2gtl	0.65
b.34.12.1: BAH domain	d3pt9a1	3pt9	0.65
b.61.7.1: Extracellular hemoglobin linker subunit, receptor domain	d2gtlm1	2gtl	0.64
b.61.7.1: Extracellular hemoglobin linker subunit, receptor domain	d2gtlm1	2gtl	0.64

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01872	RibD_C	8.41
PF01370	Epimerase	6.54
PF07228	SpoIIE	3.74
PF00296	Bac_luciferase	3.74
PF14542	Acetyltransf_CG	2.80
PF14417	MEDS	2.80
PF10057	MpsC	2.80
PF01965	DJ-1_PfpI	1.87
PF12840	HTH_20	1.87
PF00210	Ferritin	1.87
PF01904	DUF72	1.87
PF05974	DUF892	1.87
PF13409	GST_N_2	0.93
PF13185	GAF_2	0.93
PF12804	NTP_transf_3	0.93
PF02782	FGGY_C	0.93
PF13560	HTH_31	0.93
PF13823	ADH_N_assoc	0.93
PF02357	NusG	0.93
PF01025	GrpE	0.93
PF07883	Cupin_2	0.93
PF12697	Abhydrolase_6	0.93
PF04545	Sigma70_r4	0.93
PF13193	AMP-binding_C	0.93
PF02769	AIRS_C	0.93
PF00941	FAD_binding_5	0.93
PF00005	ABC_tran	0.93
PF00211	Guanylate_cyc	0.93
PF00378	ECH_1	0.93
PF08327	AHSA1	0.93
PF01740	STAS	0.93
PF13466	STAS_2	0.93
PF03947	Ribosomal_L2_C	0.93
PF01073	3Beta_HSD	0.93
PF00282	Pyridoxal_deC	0.93
PF12680	SnoaL_2	0.93
PF13426	PAS_9	0.93
PF00149	Metallophos	0.93
PF01557	FAA_hydrolase	0.93
PF08843	AbiEii	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	8.41
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	8.41
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	3.74
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	1.87
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	1.87
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	0.93
COG0090	Ribosomal protein L2	Translation, ribosomal structure and biogenesis [J]	0.93
COG0250	Transcription termination/antitermination protein NusG	Transcription [K]	0.93
COG0576	Molecular chaperone GrpE (heat shock protein HSP-70)	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.93
COG2253	Predicted nucleotidyltransferase component of viral defense system	Defense mechanisms [V]	0.93

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.33 %
Unclassified	root	N/A	4.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.33 %
Unclassified	root	N/A	4.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.33 %
Unclassified	root	N/A	4.67 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	85.05 %
Unclassified	root	N/A	4.67 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.93 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	82.24 %
Unclassified	root	N/A	4.67 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	39.25 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	12.15 %
Unclassified	root	N/A	4.67 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	39.25 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5.61 %
Unclassified	root	N/A	4.67 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	39.25 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5.61 %
Unclassified	root	N/A	4.67 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003990\|Ga0055455_10002267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3399	Open in IMG/M
3300003992\|Ga0055470_10059328	All Organisms → cellular organisms → Bacteria → Terrabacteria group	864	Open in IMG/M
3300003995\|Ga0055438_10169696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	653	Open in IMG/M
3300003996\|Ga0055467_10007616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2046	Open in IMG/M
3300003998\|Ga0055472_10051975	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300004013\|Ga0055465_10359331	All Organisms → cellular organisms → Bacteria → Terrabacteria group	509	Open in IMG/M
3300004016\|Ga0058689_10090257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	633	Open in IMG/M
3300004114\|Ga0062593_102146547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	624	Open in IMG/M
3300004114\|Ga0062593_103482285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300004153\|Ga0063455_100857950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	637	Open in IMG/M
3300005329\|Ga0070683_100002585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	14475	Open in IMG/M
3300005332\|Ga0066388_101701717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1116	Open in IMG/M
3300005333\|Ga0070677_10000003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	81204	Open in IMG/M
3300005336\|Ga0070680_100184929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1755	Open in IMG/M
3300005337\|Ga0070682_100000102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	76457	Open in IMG/M
3300005455\|Ga0070663_100602032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	924	Open in IMG/M
3300005466\|Ga0070685_10108301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1708	Open in IMG/M
3300005539\|Ga0068853_100088586	All Organisms → cellular organisms → Bacteria	2717	Open in IMG/M
3300005548\|Ga0070665_100000159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	122613	Open in IMG/M
3300005549\|Ga0070704_100689082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	905	Open in IMG/M
3300005578\|Ga0068854_100219584	Not Available	1503	Open in IMG/M
3300005587\|Ga0066654_10000072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	18387	Open in IMG/M
3300005614\|Ga0068856_100076936	All Organisms → cellular organisms → Bacteria	3306	Open in IMG/M
3300005616\|Ga0068852_101236002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	768	Open in IMG/M
3300005618\|Ga0068864_100000023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	257064	Open in IMG/M
3300005719\|Ga0068861_102159893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	557	Open in IMG/M
3300005888\|Ga0075289_1036430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	744	Open in IMG/M
3300005896\|Ga0075282_1020750	Not Available	846	Open in IMG/M
3300006034\|Ga0066656_10166460	Not Available	1387	Open in IMG/M
3300006038\|Ga0075365_10841611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	647	Open in IMG/M
3300006578\|Ga0074059_10117272	Not Available	1407	Open in IMG/M
3300006604\|Ga0074060_11785206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3536	Open in IMG/M
3300009098\|Ga0105245_10000290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	47991	Open in IMG/M
3300009098\|Ga0105245_10001595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	20644	Open in IMG/M
3300009553\|Ga0105249_10000073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	145660	Open in IMG/M
3300009553\|Ga0105249_10250174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1757	Open in IMG/M
3300010036\|Ga0126305_10438233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	865	Open in IMG/M
3300012070\|Ga0153963_1043814	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300012212\|Ga0150985_108470207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	608	Open in IMG/M
3300012212\|Ga0150985_115657477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	687	Open in IMG/M
3300012212\|Ga0150985_116630998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	616	Open in IMG/M
3300012212\|Ga0150985_120178165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	543	Open in IMG/M
3300012469\|Ga0150984_102722138	All Organisms → cellular organisms → Bacteria → Terrabacteria group	787	Open in IMG/M
3300012469\|Ga0150984_103333031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	540	Open in IMG/M
3300012469\|Ga0150984_107784531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	669	Open in IMG/M
3300012469\|Ga0150984_113497478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	694	Open in IMG/M
3300012903\|Ga0157289_10007226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2009	Open in IMG/M
3300012908\|Ga0157286_10063699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	987	Open in IMG/M
3300012916\|Ga0157310_10000931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5554	Open in IMG/M
3300012951\|Ga0164300_10000112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11880	Open in IMG/M
3300012955\|Ga0164298_10000557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10327	Open in IMG/M
3300012958\|Ga0164299_10000004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	160853	Open in IMG/M
3300012960\|Ga0164301_10125708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1524	Open in IMG/M
3300012984\|Ga0164309_11195317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	638	Open in IMG/M
3300012989\|Ga0164305_10070569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2134	Open in IMG/M
3300013307\|Ga0157372_12441537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	600	Open in IMG/M
3300013308\|Ga0157375_12087576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	674	Open in IMG/M
3300014166\|Ga0134079_10000004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	187965	Open in IMG/M
3300014255\|Ga0075320_1034808	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	866	Open in IMG/M
3300014325\|Ga0163163_11796625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	673	Open in IMG/M
3300014326\|Ga0157380_13409577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509	Open in IMG/M
3300014968\|Ga0157379_10043125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4028	Open in IMG/M
3300015067\|Ga0167640_100403	All Organisms → cellular organisms → Bacteria	3991	Open in IMG/M
3300015068\|Ga0167645_100070	All Organisms → cellular organisms → Bacteria	15578	Open in IMG/M
3300017792\|Ga0163161_10811812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	787	Open in IMG/M
3300018422\|Ga0190265_10185833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2073	Open in IMG/M
3300018431\|Ga0066655_10522582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	789	Open in IMG/M
3300019881\|Ga0193707_1002491	All Organisms → cellular organisms → Bacteria	6707	Open in IMG/M
3300020021\|Ga0193726_1004247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	8773	Open in IMG/M
3300020069\|Ga0197907_10605026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	531	Open in IMG/M
3300020076\|Ga0206355_1593376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	623	Open in IMG/M
3300020076\|Ga0206355_1653631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503	Open in IMG/M
3300020078\|Ga0206352_11226632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300021339\|Ga0193706_1022546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1942	Open in IMG/M
3300021363\|Ga0193699_10000022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	146688	Open in IMG/M
3300021403\|Ga0210397_10104946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1915	Open in IMG/M
3300022756\|Ga0222622_10000008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	252892	Open in IMG/M
3300023097\|Ga0247757_10019960	Not Available	2094	Open in IMG/M
3300025537\|Ga0210061_1092205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	533	Open in IMG/M
3300025552\|Ga0210142_1062080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	727	Open in IMG/M
3300025780\|Ga0210100_1001938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2103	Open in IMG/M
3300025893\|Ga0207682_10000052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	49191	Open in IMG/M
3300025912\|Ga0207707_10036520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4295	Open in IMG/M
3300025927\|Ga0207687_10000012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	370729	Open in IMG/M
3300025927\|Ga0207687_10000363	All Organisms → cellular organisms → Bacteria	30290	Open in IMG/M
3300025944\|Ga0207661_10001845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	14494	Open in IMG/M
3300025961\|Ga0207712_10000003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	615314	Open in IMG/M
3300025961\|Ga0207712_10168353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1710	Open in IMG/M
3300025981\|Ga0207640_10029830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3352	Open in IMG/M
3300026035\|Ga0207703_10000132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	90163	Open in IMG/M
3300026041\|Ga0207639_10001160	All Organisms → cellular organisms → Bacteria	17875	Open in IMG/M
3300026043\|Ga0208145_1012752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	590	Open in IMG/M
3300026078\|Ga0207702_10035185	All Organisms → cellular organisms → Bacteria	4188	Open in IMG/M
3300026095\|Ga0207676_10000025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	261714	Open in IMG/M
3300026142\|Ga0207698_12182717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	567	Open in IMG/M
3300026308\|Ga0209265_1000193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	15668	Open in IMG/M
3300027176\|Ga0208992_1030188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	721	Open in IMG/M
3300027750\|Ga0209461_10048357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	859	Open in IMG/M
3300028556\|Ga0265337_1225307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	510	Open in IMG/M
3300028707\|Ga0307291_1000002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	157303	Open in IMG/M
3300031089\|Ga0102748_11574698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530	Open in IMG/M
3300031184\|Ga0307499_10003769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3335	Open in IMG/M
3300031184\|Ga0307499_10008374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2066	Open in IMG/M
3300031200\|Ga0307496_10001749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2120	Open in IMG/M
3300032174\|Ga0307470_10018582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3077	Open in IMG/M
3300033433\|Ga0326726_10755113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	940	Open in IMG/M
3300034268\|Ga0372943_0513125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	782	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.81%
Host-Associated	Host-Associated	40.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.47%
Plants	Host-Associated → Plants	39.25%
Aquatic	Environmental → Aquatic	9.35%
Fungi	Host-Associated → Fungi	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.63%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.89%
Marine	Environmental → Aquatic → Marine	8.41%
Roots	Host-Associated → Plants → Roots	1.87%
Phyllosphere	Host-Associated → Plants → Phyllosphere	1.87%
Sediment	Environmental → Aquatic → Sediment	0.93%
Peat	Environmental → Terrestrial → Peat	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.93%
Mycelium	Host-Associated → Fungi → Mycelium	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.51%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.21%
Loam	Environmental → Terrestrial → Soil → Loam	9.35%
Wetlands	Environmental → Aquatic → Marine → Wetlands	8.41%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.41%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.74%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.93%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.21%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	8.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.87%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.82%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	8.41%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	7.48%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	3.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.74%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.87%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.87%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.87%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	1.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003990	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2	Environmental	Open in IMG/M
3300003992	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1	Environmental	Open in IMG/M
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005888	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103	Environmental	Open in IMG/M
3300005896	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_204	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300012070	Attine ant fungus gardens microbial communities from Florida, USA - TSFL047 MetaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014255	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleC_D2	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015067	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7A, Adjacent to main proglacial river, mid transect (Watson river))	Environmental	Open in IMG/M
3300015068	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8C, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020076	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021339	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c1	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023097	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L126-311R-4	Environmental	Open in IMG/M
3300025537	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025552	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025780	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1 (SPAdes)	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026043	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300027176	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028556	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG	Host-Associated	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300031089	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 2B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031200	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0055455_100022672	3300003990	Natural And Restored Wetlands	MIDTQSIPRPGERWLSCPPYLLIAHVLRVDVGADPPIVSYELQDDEGFLLESVEHALLDEGWWRTFQPMIRRSG*
Ga0055470_100593282	3300003992	Natural And Restored Wetlands	MIDTKSIPRPGERWLSCPPYLLIAHILRVDRQAEPPIVSYELQDDEGFLLESVEYALLDEGWWRTFQPMARRSG*
Ga0055438_101696961	3300003995	Natural And Restored Wetlands	MKVAMVDTKSMPKRGERWLSCPPYMLIAHVLGVEQIDGLPLVSYELQDDDGAIIERVDRAVLDDGWWKAFQPMRQYFG*
Ga0055467_100076162	3300003996	Natural And Restored Wetlands	MIDTQSTPKPGERWLSCPPYLLIAHVLRVDEQADPPVVGYELQDDEGFLLESVELALLDEGWWRSFQPMVRRSG*
Ga0055472_100519751	3300003998	Natural And Restored Wetlands	MIDTRSIPHPGDLWLSRPPYLLIARVIDVDERSEPRVVSYELQDDDGSVLERINHATLDSGWWKAFQPMIPRQG*
Ga0055465_103593312	3300004013	Natural And Restored Wetlands	TMIDTQSTPKPGERWLSCPPYLLIAHVLRVDEQADPPVVGYELQDDEGFLLESVELALLDEGWWRSFQPMVRRSG*
Ga0058689_100902573	3300004016	Agave	RTTPRPGERWLSCPPYLLIAHVVRVDDVVDPPVVSYELLDEDGNLLESVEHAVLDDGWWRAFQPLVPKFG*
Ga0062593_1021465472	3300004114	Soil	QPGERWLSCPPYLLIAHVLRVELGDGSAVVSYELQDDDGSLLESIEHAVLDAGWWRTFQPMRLHQG*
Ga0062593_1034822852	3300004114	Soil	MVDTKSIPRPGQRWLSRPPYLLIAHVVSVDHTAEPPVVSYELQDESGFLLESVEHAVVDGGWWRAFQPLVPRHG*
Ga0063455_1008579501	3300004153	Soil	MVDTKSVPQAGERWLSCPPYVLIARVLGVEQIDGRPLISYELQDDDGAVIERVDRALLDDGWWKAFQPMRRRLG*
Ga0070683_10000258516	3300005329	Corn Rhizosphere	MKAPMVDTKSIPKRGERWLSCPPYMLIAHVLGVEQVEGRPLVSYELQDDDGVVIERIDRAVLDDGWWRAFQPMRPHFG*
Ga0066388_1017017171	3300005332	Tropical Forest Soil	RPGERWLSCPPFMLIAHIVRVEARAEPPLVTYELQDGDGCSLESVEHAVLDEGWWRAFQPMRRRFG*
Ga0070677_1000000346	3300005333	Miscanthus Rhizosphere	MIDTKSIPRSGECWLSCPPYTLIAQILRVDRSVQPPLVTYALQDDEGGLIESVEHAVLDEGWWQAFQPMRRHFG*
Ga0070680_1001849293	3300005336	Corn Rhizosphere	MVDTKSIPKPGERWLSCPPYVLIAHVLGVEQVDGLPLVTYELQDDDGMVIERVDRAVLDDGWWRAFQPLRRRFG*
Ga0070682_10000010261	3300005337	Corn Rhizosphere	MVDTQSIPRPGERWLSCPPYTLIAHILEVERVERVALVSYELQDDDGAVIERVEHAVLDDGWWRAFQPLRPRFG*
Ga0070663_1006020322	3300005455	Corn Rhizosphere	MIDTKSIPRSGERWLSCPPYTLIAHILSVDDTVEPHLVTYALQDDEGGLIESVEHAVLDDGWWQAFQPMRFHFG*
Ga0070685_101083012	3300005466	Switchgrass Rhizosphere	MIDTKSIPQPGDLWLSRPPYLLIAHVVEVDERSDPPVVGYELQDDDGSLLEQVAHAKLDGGWWKAFQPLPRRQG*
Ga0068853_1000885866	3300005539	Corn Rhizosphere	RPVGRKGGMLDTHSIPQAGERWLSCPPYVLIAHVFGVEQVGGLPLVSYELQDDDGLVIERVERAVLDDGWWRAFQPMRRYFG*
Ga0070665_100000159109	3300005548	Switchgrass Rhizosphere	MNLGMFDAMSMPKQGERWLSCPPYTLIAHVLGVEHPDGVPLVSYELQDDDGAIIERVDRAVLDDGWWKAFQPMRQYFG*
Ga0070704_1006890823	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MIDTESIPRVGERWLSCPPYVLIAHVLRVDRTAAPPLVSYVLQDDDGTLLESVEHAVLDEGWWKAFQPLRRRFG*
Ga0068854_1002195842	3300005578	Corn Rhizosphere	MIDTKSIPRSGECWLSCPPYTLIAHIVRVDRSVQPPLVTYALQDDEGSLIESVEHAVLDEGWWQAFQPMRRHFG*
Ga0066654_1000007210	3300005587	Soil	MVDTKSVPKSGERWLSRPPYVLIAHVLGVEQIDGRSLVSYELQDDDGGVIEKVDRALLDGGWWKAFQPMRPHFG*
Ga0068856_1000769363	3300005614	Corn Rhizosphere	MLDTHSIPQAGERWLSCPPYMLIAHVLGVESTGGPPLVSYELQDDDGVVIERVDRAILDDGWWRAFQPMRQRFG*
Ga0068852_1012360022	3300005616	Corn Rhizosphere	MIDTKSIPRPGELWLSCPPYSLIARILRVQGPNPGLVSYELLDDDGRAIERVEHALLDEAWWRAFQPMRRRYG*
Ga0068864_100000023192	3300005618	Switchgrass Rhizosphere	MIDTQSIPRPGERWLSCPPYLLIAHVVAVEERVDPPLVSYELQDDEGQLLECVEHALLDEGWWKTFQPMIRRCG*
Ga0068861_1021598931	3300005719	Switchgrass Rhizosphere	MVDTKSIPRPGERWLSCPPYVLIAHILEVERDDRTPLVSYELQDDDGGVIERVEHAVLDDGW
Ga0075289_10364302	3300005888	Rice Paddy Soil	VIDTKSIPRPGERWLSCPPYLLIVHVLRVDERADPPVVSYELQDDRGFLLESVEHALLDEGWWRTFQPLVRRRG*
Ga0075282_10207502	3300005896	Rice Paddy Soil	MIDTTSIPKPGERWLSCPPYLLIAHVVDVDESEDPPVVSYELQDDDGYLLERVAHAAVDDGWWRAFQPMAARYG*
Ga0066656_101664601	3300006034	Soil	MVDTKSVPKSGERWLSRPPYVLIAHVLGVEQIDGRSLVSYELQDDDGGVIEKVDRALLDGGWWKAFQPM
Ga0075365_108416111	3300006038	Populus Endosphere	LPVWFSLLSHGYRAPTVIDTQSIPRPGERWLSCPPYVLIAHIVSVDERCQPPLVTYGLQDDDGCLLESVEHAVLDEAWWKAFQPMHLRFG*
Ga0074059_101172721	3300006578	Soil	MKPGMVDTKSIPKPGERWLSCPPYMLIAHVLEVVQGGGLPLVSYELQDDDGVVIERVDRAVLDDGWWQ
Ga0074060_117852062	3300006604	Soil	MKPGMVDTKSIPKPGERWLSCPPYMLIAHVLGVERVDGRPLVSYELQDDDGAVIERVDRAALDDGWWKAFQPMRQRFG*
Ga0105245_1000029034	3300009098	Miscanthus Rhizosphere	MIDTQSIPRSGERWLSCPPYTLIAHVLRVDRTVEPPLVTYELQDDEGRPIESVEHAVVDEGWWRAFQPMQRRFG*
Ga0105245_100015952	3300009098	Miscanthus Rhizosphere	MVDTKSIPKAGERWLSCPPYTLIAHVLGVEQGDGLPLVSYELQDDDGVIIERVERAVLDDGWWIAFQPMRQYFG*
Ga0105249_1000007384	3300009553	Switchgrass Rhizosphere	MIDTKSIPRSGERWLSCPPYTLIAHILSVDATAEPALVTYALQDDEGGLIESVEHAVLDDGWWQAFQPMRFRFG*
Ga0105249_102501742	3300009553	Switchgrass Rhizosphere	LILVGFPSEQTGKKARMVDTKSIPKPGERWLSCPPYMLIAHVLGVEQVEGLRLVSYELQDDDGAVIERVDRAALDDGWWKAFQPMRQYFG*
Ga0126305_104382333	3300010036	Serpentine Soil	MIDTQTVPQPGERWLSRPPYLLIAHIVDVDQEATPSLVSYELQDEEGFPLERVEHAVLNEGWWKAFQPMVYRHG*
Ga0153963_10438141	3300012070	Attine Ant Fungus Gardens	LIDTKSIPRSGERWLSCPPYTLIAHILRVDRTAEPPLVTYALQDDRGCLVENVEHAVLDQGWWQ
Ga0150985_1084702071	3300012212	Avena Fatua Rhizosphere	PSEQAGMKPRMLDTQSIPRAGDRWLSCPPYTLIAHVLRVEQIDGLPLVSYELQDDDGVVIERVYRAVLEAGWWRAFQPMRQYFG*
Ga0150985_1156574771	3300012212	Avena Fatua Rhizosphere	MIDTKSIPRAGERWLSCPPYTLIAHVLEVVQGGGLRLVSYELQDDDGVAIERVDRAVLDDGWWKAFQPMRQNFG*
Ga0150985_1166309982	3300012212	Avena Fatua Rhizosphere	MKPRMVDTKSIPRAGERWLSCPPYMLIAHVLGVEQIEGRRLISYELQDDDGVVLERVDRAVLDGGWWRAFQPLRQYFG*
Ga0150985_1201781651	3300012212	Avena Fatua Rhizosphere	PRAARLRGGRLGDLWLSRPPYLLIAHVVEVDERSNPPVVGYELQDDDGSVLERVAHAKLDSGWWKAFQPLSRHQG*
Ga0150984_1027221382	3300012469	Avena Fatua Rhizosphere	GERWLSCPPYVLIAHVLGVEQVDGQPLVSYELQDDDGVVIERVDRALLDDGWWKAFQPMRQHFG*
Ga0150984_1033330312	3300012469	Avena Fatua Rhizosphere	KSMPRPGDLWLSRPPYLLIAHVVEVDERSNPPVVGYELQDDDGSVLERVAHAKLDSGWWKAFQPLSRHQG*
Ga0150984_1077845311	3300012469	Avena Fatua Rhizosphere	PQAGDRWLSCPPYTLIAHVVGVEQINGLPLVSYELQDDDGVVIERVYRAVLEAGWWRAFQPMRQYFG*
Ga0150984_1134974782	3300012469	Avena Fatua Rhizosphere	LFRSVSPSEQAGMKPGMLDTKSIPQAGDRWLSCPPYTLIAHVLGVEQVEGLPLVSYELQDDDGVVIETVKRAVLDDGWWRAFQPMRQYFG*
Ga0157289_100072261	3300012903	Soil	SHRFSFPRGGYQARMLDTQSIPRPGERWLSCPPYVLIAHIRRVERANELALVTYELQDDDGVVIESVEHAVLDDGWWKAFQPMRQRFG*
Ga0157286_100636992	3300012908	Soil	MVDTKSIPRPGERWLSCPPYVLIAHIVRVERANGLPLVTYELQDDDGMVIERVEHAVLDEGWWKAFQPLRRRFG*
Ga0157310_100009317	3300012916	Soil	MVDTKSIPRPGERWLSCPPYVLIAHILRVERVNDLPLVTYELQDDDGGVIERVEHAVLDEGWWKAFQPLRQRFG*
Ga0164300_1000011215	3300012951	Soil	MINTRSIPQPGERWLSCPPYLLIAHVLQVDERGDPPVVSYELQDNEGFLLESVEHALLDEGWWKSFQPMIRRCG*
Ga0164298_1000055713	3300012955	Soil	MLDTKSIPRPGERWLSCPPYMLIAHILRVEQGERLPLVSYELQDDDGVVIESVERVVLDDGWWRAFQPMRQRFG*
Ga0164299_10000004122	3300012958	Soil	MRVIPSSMINTRSIPQPGERWLSCPPYLLIAHVLQVDERGDPPVVSYELQDNEGFLLESVEHALLDEGWWKSFQPMIRRCG*
Ga0164301_101257084	3300012960	Soil	MIDTKSIPQPGDLWLSRPPYLLIAHVVAVDECSDPPVVGYELRDDDGSLLERVAHAKLDDGWWKAFQPMPRRQGCRAKGDG
Ga0164309_111953171	3300012984	Soil	RWLSCPPYVLIAHVLGVEQGDGRPLVSYELQDDDGVVIERVDRAVLDDGWWRAFQPMRRRFG*
Ga0164305_100705692	3300012989	Soil	MLDTESIPKSGERWLSCPPYMLIAHVLGVEQVGGQPLISYELQDDDGMVIERVDRALLDDGWWRAFQPLRQYFG*
Ga0157372_124415372	3300013307	Corn Rhizosphere	MIDTKSIPQPGDLWLSRPPYLLIAHVIEVDEHCDPPVVGYELQDEDGSLLERVDAELDGGWWKAFQPLPRRQG*
Ga0157375_120875761	3300013308	Miscanthus Rhizosphere	GGKVEGAVDVARGFSFRPRGYELRMVDTHSIPQAGERWLSCPPYALIAHVLGVEQVEGQARVSYELQDDDGLVLERVDRAVLDDGWWRAFQPLRQYFG*
Ga0134079_1000000469	3300014166	Grasslands Soil	MIDTKSIPRPGERWLSRPPYLLIAHVLRVDEQAEPTVISYELQDDEGFLLDSVDALLDEGWWKAFQPMARHCG*
Ga0075320_10348082	3300014255	Natural And Restored Wetlands	MVDTKSIPQPGERWLSCPPYVLIAHVLGVEEVEGQPLVSYELQDDDGVVIESVEHAVLDEGWWRAFQPMHPRFG*
Ga0163163_117966251	3300014325	Switchgrass Rhizosphere	MIDTKSIPRPGDLWLSRPPYLLIAHVVEVDERSDPPVVGYELQDDDGSLLEQVAHAKLDSGWWKAFQP
Ga0157380_134095771	3300014326	Switchgrass Rhizosphere	MIDTKSIPRPGERWLSCPPYMLIAHILRVELGNELPLVTYELQDDDGAVIERVEHAVLDDGWWMAFQPLRQRFG*
Ga0157379_100431252	3300014968	Switchgrass Rhizosphere	MIDTKSIPRSGERWLSCPPYTLIAHILSVDATVEPHLVTYALQDDEGSLIESVEHAVLDDGWWQAFQPMRFHFG*
Ga0167640_1004032	3300015067	Glacier Forefield Soil	MKHRMVDTKSVPRAGERWLSCPPYMLIAHVLEVVQGGGLPLVSYELQDDDGLIIERVDRAVLDDGWWQAFQPMRQYFG*
Ga0167645_1000703	3300015068	Glacier Forefield Soil	MDGYEARMVDTKSIPRSGERWLSCPPYMLIAHVLGVEQVDGRPLVSYELQDDDGVVIERVDRAVLDDGWWSAFQPMRQYFG*
Ga0163161_108118121	3300017792	Switchgrass Rhizosphere	MIDTKSMPRAGERWLSCPPYTLIAHVLRVEQTDESPLVSYELQDDDGVVIESVEHAVLDDGWWKAFQPMRQRFG
Ga0190265_101858331	3300018422	Soil	MIDTETVPKPGERWLSSPPYLLIVHVVAVDEHAPTPLVTYALQDEGGSLLETVEHAVLDRGWWRTFQPMVRRHG
Ga0066655_105225822	3300018431	Grasslands Soil	MVDTKSVPKSGERWLSRPPYVLIAHVLGVEQIDGRSLVSYELQDDDGGVIEKVDRALLDGGWWKAF
Ga0193707_10024916	3300019881	Soil	MVDTKSIPESGERWLSCPPYMLIAHVLGVERVGGLPLVSYELQDDDGVVIERVDRAVLDDGWWKAFQPMRQNFG
Ga0193726_10042474	3300020021	Soil	MIDTKSIPRPGERWLSCPPYLLIAHVQRVDERAEPPVVSYELQDDEGFLLESVEHALLDDGWWRSFQPMARRCG
Ga0197907_106050262	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	SGSRVRASMIDTKSMPKPGDLWLSRPPYLLIAHVVELDELSDPPLVGYELQDEDGSVLERVTHAKLDGGWWKAFQPLPRRQG
Ga0206355_15933761	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	MLDTKSIPRSGERWLSCPPYMLIAHVLGVEQVDGLSLVSYELQDDDGAVIERVDRALLDDGWWRAFQPMRQYFG
Ga0206355_16536311	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	FSPRFCLLASGYGAFMLDTKSIPQPGERWLSCPPYVLIAHILRVESNEGSPLVSYELQDDDGFVIERIDHAALDDGWWRAFQPMRRRFG
Ga0206352_112266321	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	THSIPQAGERWLSCPPYMLIAHVLGVELISGLPLISYELQDDDGAVIERVDRAVFDDGWWKAFQPMRRYFG
Ga0193706_10225463	3300021339	Soil	MVDTKSIPQPGERWLSCPPYVLIAHVLRVERANEVPLVTYELQDDDGGVIERVEHAVLDEGWWKAFQPLRQRFG
Ga0193699_1000002233	3300021363	Soil	MGTNVAMIDTKSIPQPGERWLSCPPYLLIAHVQRVDERAEPPVVSYELQDEEGFLLESIEHAVLDDGWWKSFQPMVPRSG
Ga0210397_101049462	3300021403	Soil	LNGFPSEWTGMKARMVDTKSIPKSGERWLSCPPYMLIARVLGVEQVDGLQRVTYELQDDDGVVIERVDRAVLDDGWWRAFQPLRQYFG
Ga0222622_1000000810	3300022756	Groundwater Sediment	MVDTKSIPQRGERWLSCPPYLLIAHVLSVDEDADVPVVSYELRDQEGSLLESIEHALLDEGWWKAFQPMPRRCG
Ga0247757_100199601	3300023097	Plant Litter	MVDTKSIPRPGERWLSCPPYVLIAHVREVELVGGSPLVSYELQDDDGLVIERVERAVLDDGWWRAFQPMRPRFG
Ga0210061_10922051	3300025537	Natural And Restored Wetlands	MIDTKSIPRPGERWLSCPPYLLIAHILRVDRQAEPPIVGYELQDDEGFLLESVEYALLDEGWWRTFQPMARRSG
Ga0210142_10620802	3300025552	Natural And Restored Wetlands	MIDTQSIPRPGERWLSCPPYLLIAHVLRVDVGADPPIVSYELQDDEGFLLESVEHALLDEGWWRTFQPMIRRSG
Ga0210100_10019382	3300025780	Natural And Restored Wetlands	MIDTQSTPKPGERWLSCPPYLLIAHVLRVDEQADPPVVGYELQDDEGFLLESVELALLDEGWWRSFQPMVRRSG
Ga0207682_1000005240	3300025893	Miscanthus Rhizosphere	MIDTKSIPRSGECWLSCPPYTLIAQILRVDRSVQPPLVTYALQDDEGGLIESVEHAVLDEGWWQAFQPMRRHFG
Ga0207707_100365204	3300025912	Corn Rhizosphere	MVDTKSIPKPGERWLSCPPYVLIAHVLGVEQVDGLPLVTYELQDDDGMVIERVDRAVLDDGWWRAFQPLRRRFG
Ga0207687_1000001231	3300025927	Miscanthus Rhizosphere	MIDTQSIPRSGERWLSCPPYTLIAHVLRVDRTVEPPLVTYELQDDEGRPIESVEHAVVDEGWWRAFQPMQRRFG
Ga0207687_100003632	3300025927	Miscanthus Rhizosphere	MVDTKSIPKAGERWLSCPPYTLIAHVLGVEQGDGLPLVSYELQDDDGVIIERVERAVLDDGWWIAFQPMRQYFG
Ga0207661_100018452	3300025944	Corn Rhizosphere	MKAPMVDTKSIPKRGERWLSCPPYMLIAHVLGVEQVEGRPLVSYELQDDDGVVIERIDRAVLDDGWWRAFQPMRPHFG
Ga0207712_10000003441	3300025961	Switchgrass Rhizosphere	MIDTKSIPRSGERWLSCPPYTLIAHILSVDATAEPALVTYALQDDEGGLIESVEHAVLDDGWWQAFQPMRFRFG
Ga0207712_101683532	3300025961	Switchgrass Rhizosphere	MVDTKSIPKPGERWLSCPPYMLIAHVLGVEQVEGLRLVSYELQDDDGAVIERVDRAALDDGWWKAFQPMRQYFG
Ga0207640_100298305	3300025981	Corn Rhizosphere	MIDTKSIPRSGECWLSCPPYTLIAHIVRVDRSVQPPLVTYALQDDEGSLIESVEHAVLDEGWWQAFQPMRRHFG
Ga0207703_100001322	3300026035	Switchgrass Rhizosphere	MNLGMFDAMSMPKQGERWLSCPPYTLIAHVLGVEHPDGVPLVSYELQDDDGAIIERVDRAVLDDGWWKAFQPMRQYFG
Ga0207639_1000116013	3300026041	Corn Rhizosphere	MLDTHSIPQAGERWLSCPPYVLIAHVFGVEQVGGLPLVSYELQDDDGLVIERVERAVLDDGWWRAFQPMRRYFG
Ga0208145_10127522	3300026043	Natural And Restored Wetlands	MIDTKSIPRPGERWLSCPPYLLIAHVLRVDERADPPVVSYELQDDEGLLLESVELALLDEGWWRTFQPMVRRSG
Ga0207702_100351852	3300026078	Corn Rhizosphere	MLDTHSIPQAGERWLSCPPYMLIAHVLGVESTGGPPLVSYELQDDDGVVIERVDRAILDDGWWRAFQPMRQRFG
Ga0207676_1000002586	3300026095	Switchgrass Rhizosphere	MIDTQSIPRPGERWLSCPPYLLIAHVVAVEERVDPPLVSYELQDDEGQLLECVEHALLDEGWWKTFQPMIRRCG
Ga0207698_121827171	3300026142	Corn Rhizosphere	MIDTKSIPRPGELWLSCPPYSLIARILRVQGPNPGLVSYELLDDDGRAIERVEHALLDEAWWRAFQPMRRRYG
Ga0209265_100019312	3300026308	Soil	MVDTKSVPKSGERWLSRPPYVLIAHVLGVEQIDGRSLVSYELQDDDGGVIEKVDRALLDGGWWKAFQPMRPHFG
Ga0208992_10301882	3300027176	Forest Soil	MVNTQSIPKSGERWLSCPPYMLIAHVRNVEQIDGLPLVSYDLQDDDGVVIERVDRTVLDDGWWRAFQPMRQHFG
Ga0209461_100483573	3300027750	Agave	MIGTRTTPRPGERWLSCPPYLLIAHVVRVDDVVDPPVVSYELLDEDGNLLESVEHAVLDDGWWRAFQPLVPKFG
Ga0265337_12253072	3300028556	Rhizosphere	MIDTKSIPKPGERWLSCPPYTLIAHVLGVERVDGLPLVSYELQDDDGVVIERVDQSVLDDGWWRAFQPM
Ga0307291_100000293	3300028707	Soil	MIDTKSIPRPGERWLSCPPYLLIAHVLRVDEHVKPAVVSYELQDEEGFLLESVEHAVLDDGWWKTFQPMTRRCG
Ga0102748_115746981	3300031089	Soil	MIDTKSIPRPGERWLSCPPYVLIAHILRIERVEGVPLVTYELQDDDGAMIESVEHAVLDEGWWRAFQPMPQRFG
Ga0307499_100037691	3300031184	Soil	MIDTKSIPRPGERWLSCPPYLLIAHIVRVDAETAPPLVSYELQDDEGTLLERVEHAILDEGWWKAFQPIARRCG
Ga0307499_100083742	3300031184	Soil	MIDTKSIPRPGERWLSRPPYLLIAHVLRIDERSAPPVVSYELQDGEGFLLESVEHAVLDEGWWKSFQPMVRRTG
Ga0307496_100017493	3300031200	Soil	MLDTKSIPTPGERWLSCPPYLLIAHILEVERADQTSLVSYELQDDDGAVIERVEHAVLDEGWWKAFQPLRQRFG
Ga0307470_100185824	3300032174	Hardwood Forest Soil	MVDTKSIPRPGERWLSCPPYLLIAHVLRVDEVADPPVVSYELQDNAGGLLESVEHALLDEGWWKAFQPMVRRCG
Ga0326726_107551132	3300033433	Peat Soil	VIDTQTTPRPGERWLSCPPYLLIAHVIGVDEMADPPLVSYELQDEDGDPLERVEHAILDDGWWRAFQPMVRRCG
Ga0372943_0513125_521_745	3300034268	Soil	MVDTKSIPQAGERWLSCPPYMLIAHVLGVEQVDGLPRVSYELQDDDGVVIERVDRAVLDSGWWSAFQPMRRYFG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092001

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences