Metagenome / Metatranscriptome Family F091994

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091994
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	79 residues
Representative Sequence	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPVTCYVWS
Number of Associated Samples	93
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.83 %
% of genes near scaffold ends (potentially truncated)	29.91 %
% of genes from short scaffolds (< 2000 bps)	94.39 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.486 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.495 % of family members)
Environment Ontology (ENVO)	Unclassified (39.252 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.682 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.80% β-sheet: 14.81% Coil/Unstructured: 49.38%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF12680	SnoaL_2	14.02
PF05901	Excalibur	13.08
PF02900	LigB	9.35
PF00196	GerE	4.67
PF01575	MaoC_dehydratas	2.80
PF12802	MarR_2	1.87
PF00391	PEP-utilizers	1.87
PF00496	SBP_bac_5	0.93
PF00848	Ring_hydroxyl_A	0.93
PF03466	LysR_substrate	0.93
PF07811	TadE	0.93
PF03061	4HBT	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG4638	Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit	Inorganic ion transport and metabolism [P]	1.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.49 %
Unclassified	root	N/A	35.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.49 %
Unclassified	root	N/A	35.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.49 %
Unclassified	root	N/A	35.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	29.91 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	28.04 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17.76 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	4.67 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	4.67 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.93 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	4.67 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	3.74 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → environmental samples	0.93 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	4.67 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
uncultured Frankineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → environmental samples → uncultured Frankineae bacterium	0.93 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Streptomyces bungoensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces bungoensis	4.67 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
uncultured Frankineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → environmental samples → uncultured Frankineae bacterium	0.93 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2347010	Not Available	579	Open in IMG/M
3300004480\|Ga0062592_101012661	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300005093\|Ga0062594_100982204	Not Available	809	Open in IMG/M
3300005329\|Ga0070683_101143726	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300005334\|Ga0068869_101642267	Not Available	573	Open in IMG/M
3300005337\|Ga0070682_100039192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2910	Open in IMG/M
3300005338\|Ga0068868_100206360	All Organisms → cellular organisms → Bacteria	1640	Open in IMG/M
3300005339\|Ga0070660_100338092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1239	Open in IMG/M
3300005340\|Ga0070689_101867972	Not Available	548	Open in IMG/M
3300005343\|Ga0070687_101426286	Not Available	518	Open in IMG/M
3300005344\|Ga0070661_100751642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	797	Open in IMG/M
3300005347\|Ga0070668_100809134	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300005367\|Ga0070667_101605448	Not Available	611	Open in IMG/M
3300005438\|Ga0070701_10966291	Not Available	592	Open in IMG/M
3300005456\|Ga0070678_100844976	Not Available	834	Open in IMG/M
3300005457\|Ga0070662_100107828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2118	Open in IMG/M
3300005457\|Ga0070662_100444753	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1075	Open in IMG/M
3300005539\|Ga0068853_100608648	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1038	Open in IMG/M
3300005548\|Ga0070665_100297091	All Organisms → cellular organisms → Bacteria	1618	Open in IMG/M
3300005577\|Ga0068857_101024297	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300005616\|Ga0068852_100570872	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300006579\|Ga0074054_11917434	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300006755\|Ga0079222_10918773	Not Available	738	Open in IMG/M
3300006806\|Ga0079220_10755227	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300006846\|Ga0075430_100635359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	880	Open in IMG/M
3300006847\|Ga0075431_101538748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	623	Open in IMG/M
3300006852\|Ga0075433_11331771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces bungoensis	622	Open in IMG/M
3300006880\|Ga0075429_101608437	Not Available	565	Open in IMG/M
3300007790\|Ga0105679_10223818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1487	Open in IMG/M
3300009094\|Ga0111539_12134520	Not Available	650	Open in IMG/M
3300009100\|Ga0075418_11828128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	661	Open in IMG/M
3300009174\|Ga0105241_12087203	Not Available	560	Open in IMG/M
3300009176\|Ga0105242_12147460	Not Available	603	Open in IMG/M
3300009553\|Ga0105249_12299376	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300009789\|Ga0126307_10991915	Not Available	679	Open in IMG/M
3300010037\|Ga0126304_11235900	Not Available	513	Open in IMG/M
3300010371\|Ga0134125_12023417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces bungoensis	626	Open in IMG/M
3300010400\|Ga0134122_11927819	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300012212\|Ga0150985_120563601	All Organisms → cellular organisms → Bacteria	1372	Open in IMG/M
3300012478\|Ga0157328_1002290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	908	Open in IMG/M
3300012495\|Ga0157323_1011950	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300012505\|Ga0157339_1006434	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300012897\|Ga0157285_10225448	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300012910\|Ga0157308_10230036	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300012910\|Ga0157308_10461709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces bungoensis	508	Open in IMG/M
3300012951\|Ga0164300_11052992	Not Available	528	Open in IMG/M
3300012958\|Ga0164299_11346316	Not Available	549	Open in IMG/M
3300012986\|Ga0164304_11485090	Not Available	560	Open in IMG/M
3300013102\|Ga0157371_10045003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3142	Open in IMG/M
3300013105\|Ga0157369_11022072	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	846	Open in IMG/M
3300013307\|Ga0157372_10716152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1164	Open in IMG/M
3300013308\|Ga0157375_10134960	All Organisms → cellular organisms → Bacteria	2590	Open in IMG/M
3300014969\|Ga0157376_12824250	Not Available	525	Open in IMG/M
3300015200\|Ga0173480_10515338	Not Available	719	Open in IMG/M
3300015201\|Ga0173478_10359975	Not Available	682	Open in IMG/M
3300017965\|Ga0190266_10433056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	742	Open in IMG/M
3300017965\|Ga0190266_10782585	Not Available	609	Open in IMG/M
3300018073\|Ga0184624_10301403	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300018422\|Ga0190265_11898058	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300018422\|Ga0190265_12177854	Not Available	657	Open in IMG/M
3300018422\|Ga0190265_12832404	Not Available	579	Open in IMG/M
3300018422\|Ga0190265_13101579	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300018429\|Ga0190272_11836270	Not Available	634	Open in IMG/M
3300018432\|Ga0190275_10235553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1756	Open in IMG/M
3300018465\|Ga0190269_11690225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces bungoensis	534	Open in IMG/M
3300018481\|Ga0190271_10202404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1978	Open in IMG/M
3300019767\|Ga0190267_11386606	Not Available	532	Open in IMG/M
3300020082\|Ga0206353_11144044	Not Available	577	Open in IMG/M
3300025901\|Ga0207688_10418929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces bungoensis	832	Open in IMG/M
3300025911\|Ga0207654_11379762	Not Available	514	Open in IMG/M
3300025919\|Ga0207657_10216500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1536	Open in IMG/M
3300025920\|Ga0207649_10663047	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300025925\|Ga0207650_11263181	Not Available	629	Open in IMG/M
3300025927\|Ga0207687_10138810	All Organisms → cellular organisms → Bacteria	1841	Open in IMG/M
3300025932\|Ga0207690_10714035	Not Available	825	Open in IMG/M
3300025934\|Ga0207686_11324548	Not Available	592	Open in IMG/M
3300025936\|Ga0207670_11635006	Not Available	548	Open in IMG/M
3300025937\|Ga0207669_10320169	All Organisms → cellular organisms → Bacteria	1187	Open in IMG/M
3300025944\|Ga0207661_10572177	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300025945\|Ga0207679_10981367	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300025981\|Ga0207640_10350160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → environmental samples → uncultured Frankineae bacterium	1186	Open in IMG/M
3300026023\|Ga0207677_10973566	Not Available	768	Open in IMG/M
3300026035\|Ga0207703_11048807	Not Available	783	Open in IMG/M
3300026067\|Ga0207678_10167061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1879	Open in IMG/M
3300026075\|Ga0207708_10050520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3165	Open in IMG/M
3300028379\|Ga0268266_11495514	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300028587\|Ga0247828_10677748	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300028589\|Ga0247818_10634185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	737	Open in IMG/M
3300028589\|Ga0247818_11105532	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300028596\|Ga0247821_10065523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2000	Open in IMG/M
3300028596\|Ga0247821_10573210	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300028597\|Ga0247820_10531327	Not Available	804	Open in IMG/M
3300028597\|Ga0247820_11012683	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300028597\|Ga0247820_11382411	Not Available	513	Open in IMG/M
3300028809\|Ga0247824_10490851	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300028810\|Ga0307294_10018794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1799	Open in IMG/M
3300028812\|Ga0247825_11040284	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300028812\|Ga0247825_11254493	Not Available	541	Open in IMG/M
3300030336\|Ga0247826_10263529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1217	Open in IMG/M
3300031547\|Ga0310887_10052125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1843	Open in IMG/M
3300031903\|Ga0307407_10763257	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300031938\|Ga0308175_100801355	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300032080\|Ga0326721_10144076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1201	Open in IMG/M
3300032080\|Ga0326721_10413768	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300032080\|Ga0326721_10425032	Not Available	775	Open in IMG/M
3300033551\|Ga0247830_10129944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1816	Open in IMG/M
3300033551\|Ga0247830_10257437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1324	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.07%
Host-Associated	Host-Associated	43.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.14%
Plants	Host-Associated → Plants	43.93%
Aquatic	Environmental → Aquatic	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.84%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.08%
Sediment	Environmental → Aquatic → Sediment	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	14.02%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.21%
Loam	Environmental → Terrestrial → Soil → Loam	7.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Sand	Environmental → Terrestrial → Soil → Sand	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	14.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	14.02%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	14.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	8.41%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.74%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.80%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.87%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012478	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.9.old.080610	Host-Associated	Open in IMG/M
3300012495	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.old.040610	Host-Associated	Open in IMG/M
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_23470101	3300000033	Soil	MTRTVAPWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQXLTRHYRFPVTCYVWS*
Ga0062592_1010126611	3300004480	Soil	MTRTVAPWREPSAADRCTSAVSAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQVLTRHYRFPVTCYVWS*
Ga0062594_1009822041	3300005093	Soil	MTRTAALWREPATSDRCTASVAAVARDLFTWHRRGITVRMVEPDGEGVLLGVDAPLEAIPAAHLQLTRHYRFPVTCYSWS*
Ga0070683_1011437261	3300005329	Corn Rhizosphere	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPDGDGVLLGVDAPPEAIPAAHMQLTHHYRFPVTCYSWT*
Ga0068869_1016422671	3300005334	Miscanthus Rhizosphere	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPDGEGVLLGVDAPLEAIPAAHLQLTRHYRFPVTCYSWS
Ga0070682_1000391923	3300005337	Corn Rhizosphere	MTRTAAPWREPATSDRCTASVAAVARDLFTWHRRGITVRMVEPDGDGVLLGVDAPLEAIPAAHMQLTRHYRFPVTCYAWT*
Ga0068868_1002063602	3300005338	Miscanthus Rhizosphere	MTRTVAPWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPVTCYVWS*
Ga0070660_1003380922	3300005339	Corn Rhizosphere	MTRTAALWREPATSDRCTASVAAVARDLFTWHRRGITVRMVEPDGDGVLLGVDAPLEAIPAAHMQLTRHYRFPVTCYAWT*
Ga0070689_1018679722	3300005340	Switchgrass Rhizosphere	TRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPDGEGVLLGVDAPLEAIPAAHLQLTRHYRFPVTCYSWS*
Ga0070687_1014262861	3300005343	Switchgrass Rhizosphere	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGVTVRMVEPTGDGGVLLGVDAPVEAIPAAQHLLFRHYRFPVTCYAWA*
Ga0070661_1007516422	3300005344	Corn Rhizosphere	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPDGEGVLLGVDAPLEAIPAAHLQLTRHYRFPVTCYSWT*
Ga0070668_1008091341	3300005347	Switchgrass Rhizosphere	MPRTGAPWREPAATDRCTAAVAAVARDLFTWHRRGVTVRMVEPTGDGGVLLGVDAPVEAIPAAQHLLFRHYRFPVTCYAW
Ga0070667_1016054482	3300005367	Switchgrass Rhizosphere	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPDGEGVLLGVDAPLEAIPAAHMQLTRHYRFPVTCYAWT*
Ga0070701_109662911	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	SDRCTASVAAVARDLFTWHRRGITVRMVEPDGDGVLLGVDAPLEAIPAAHLQLTRHYRFPVTCYSWS*
Ga0070678_1008449762	3300005456	Miscanthus Rhizosphere	MTRTAAPWREPATSDRCTASVAAVARDLFTWHRRGITVRMVEPDGEGVLLGVDAPLEAIPAAHLQLTRHYRFPVTCYSWS*
Ga0070662_1001078284	3300005457	Corn Rhizosphere	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPDGEGVLLGVDAPLEAIPAAHLQLTRHYRFPVTCYSWS*
Ga0070662_1004447532	3300005457	Corn Rhizosphere	MTRTVAPWREPSAADRCTTAVAAVARDLFTLHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPVTCYVWS*
Ga0068853_1006086481	3300005539	Corn Rhizosphere	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPITCYVWS*
Ga0070665_1002970912	3300005548	Switchgrass Rhizosphere	MPRTGAPWREPAATDRCTAAVAAVARDLFTWHRRGVTVRMVEPTGDGGVLLGVDAPVEAIPAAQHLLFRHYRFPVTCYPWA*
Ga0068857_1010242971	3300005577	Corn Rhizosphere	MTRTVAPWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYKLLTRHYRFPVTCYVWS*
Ga0068852_1005708722	3300005616	Corn Rhizosphere	MTRTVAPWREPAAADRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPVTCYVWS*
Ga0074054_119174341	3300006579	Soil	MTRTVAPWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQVLTRHYRFPVTCY
Ga0079222_109187731	3300006755	Agricultural Soil	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPDGDGVLLGVDAPVEAIPAAHLQLTRHYRFPVTCYSWT*
Ga0079220_107552272	3300006806	Agricultural Soil	MTRKVAPWREPSATDRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQVLTRHYRFPVTCYVWS*
Ga0075430_1006353592	3300006846	Populus Rhizosphere	MTRTAAPWRDPSTTDRCTASVAAVARDLFTWHRRGITVRMVEPAGDDGVLLGVDAPVEAIHAVHQVLVRHYRFPVTCYTWT*
Ga0075431_1015387481	3300006847	Populus Rhizosphere	PSAADRCTTAVAAVARDLFTWHRRGITVRMVEPAGDDGVLLGVDAPVEAIHAVHQVLVRHYRFPVTCYAWT*
Ga0075433_113317711	3300006852	Populus Rhizosphere	MTRTGAPWREPAASDRCTASVAAVARDLFTWHRRGITVRMVEPDGDGVLLGVDAPVEAIPAAHLQLTRHYRFPVTCYSWT*
Ga0075429_1016084372	3300006880	Populus Rhizosphere	MTRTAAPWRDPSTTDRCTASVAAVARDLFTWHRRGITVRMVEPAGDDGVLLGVDAPVEAIHAVHQVLVRHYRFPVTCYAWT*
Ga0105679_102238181	3300007790	Soil	MTRTGAPWREPSAADRCTAAVAAVARDLFTWHRRGITVRMVEPSGDGGVLLGVDAPVEAIPAVHQSLARHYRFPVTCYAFA*
Ga0111539_121345201	3300009094	Populus Rhizosphere	MNRTGAPWREPADTDRCTASVAAVARDLFTWHRRGVTVRMVEPTRDGGVLLGVDAPVEAIPAANQLLARHYRFPVACYSWS*
Ga0075418_118281281	3300009100	Populus Rhizosphere	APWRDPSTTDRCTASVAAVARDLFTWHRRGITVRMVEPAGDDGVVLGVDAPVEAIHAVHQVLVRHYRFPVTCYAWT*
Ga0105241_120872031	3300009174	Corn Rhizosphere	MTRTVAPWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPDGEGVLLGVDAPLEAIPAAHLQLTRHYRFPVTCYSWS*
Ga0105242_121474601	3300009176	Miscanthus Rhizosphere	MTRTAAPWREPATSDRCTASVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPVTCYVWS*
Ga0105249_122993761	3300009553	Switchgrass Rhizosphere	RPTEECRMTRTVAPWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPTSDGGVLLGVDAPVEAIPAVSQLLTRHYRFPVSCYAWS*
Ga0126307_109919151	3300009789	Serpentine Soil	MPRTGAPWREPAATDRCTAAVAAVARDLFTWHRRGVTVRMVEPTGDGGVLLGVDAPVEAIPAAQHLLFRHYRFPVTCYAWA*
Ga0126304_112359002	3300010037	Serpentine Soil	RRAPPNADRPKEFAMPRTGAPWREPAASDRCTAAVAAVARDLFTWHRRGVTVRMVEPTGDGGVLLGVDAPVEAIPAAQHLLFRHYRFPVTCYAWA*
Ga0134125_120234171	3300010371	Terrestrial Soil	LKEFEMTRTAALWREPATSDRCTASVAAVARDLFTWHRRGITVRMVEPDGDGVLLGVDAPLEAIPAAHLQLTRHYRFPVTCYSWS*
Ga0134122_119278191	3300010400	Terrestrial Soil	MTRTGAPWREPAASDRCTASVAAVARDLFTWHRRGITVRMVEPDGEGVLLGVDAPLEAIPAAHLQLTRHYRFPVTCY
Ga0150985_1205636012	3300012212	Avena Fatua Rhizosphere	MPRTGAPWREPAATDRCTTAVAAVARDLFTWHRRGVTVRMVEPTGDGGVLLGVDAPVEAIPAAQHLLFRHYRFPVTCYAWA*
Ga0157328_10022901	3300012478	Arabidopsis Rhizosphere	MTRTVALWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPVTCYVWS*
Ga0157323_10119502	3300012495	Arabidopsis Rhizosphere	CTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPVTCYVWS*
Ga0157339_10064341	3300012505	Arabidopsis Rhizosphere	RTVALWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPVTCYVWS*
Ga0157285_102254482	3300012897	Soil	MTRTVAPWREPSAADRCTSAVSAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQVLPRHYRFPVTCYVWS*
Ga0157308_102300361	3300012910	Soil	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPDGEGVLLGVDAPLEAIPAAHLQLTRHYRFPVTCYVWS*
Ga0157308_104617091	3300012910	Soil	MTRTGAPWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDTPVEAIPAAYQVLT
Ga0164300_110529921	3300012951	Soil	MARTVAPWREPSAADRCTSAVSAVARDLFTWHRRGITVLMVEPTGDGGVLLGVDAPVEAIPAAYQVLTRHYRFPVTCYVWS*
Ga0164299_113463161	3300012958	Soil	MTRTVATWREPSAADRCTSAVSAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQVLTRHYRFPVTCYVWS*
Ga0164304_114850901	3300012986	Soil	MIRTVAPWREPSATDRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQVLTRHYRFPVTCYVWS*
Ga0157371_100450031	3300013102	Corn Rhizosphere	LKEFEMTRTAALWREPATSDRCTASVAAVARDLFTWHRRGITVRMVEPDGDGVLLGVDAPLEAIPAAHMQLTRHYRFPVTCYAWT*
Ga0157369_110220722	3300013105	Corn Rhizosphere	MTRTVAPWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPPGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPVTCYVWS*
Ga0157372_107161522	3300013307	Corn Rhizosphere	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPDGDGVLLGVDAPLEAIPAAHMQLTRHYRFPVTCYAWT*
Ga0157375_101349601	3300013308	Miscanthus Rhizosphere	MTRTVAPWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQVLTRHYRFPVTCYVWS*
Ga0157376_128242502	3300014969	Miscanthus Rhizosphere	MARTVAPWREPSAADRCTSAVSAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPVTCYVWS*
Ga0173480_105153381	3300015200	Soil	MTRTVAPWREPSATDRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAADQVLTRHYRFPVTCYVWS*
Ga0173478_103599752	3300015201	Soil	MTRTVAPWREPSAADRCTSAVSAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAVPTAYQLLTRHYRFPVTCYVWS*
Ga0190266_104330561	3300017965	Soil	MTRTVAPWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQVLTRHYRFPVTCYVWS
Ga0190266_107825851	3300017965	Soil	MNRTGAPWREPAATDRCTASVAAVARDLFTWHRRGVTVRMVEPTRDGGVLLGVDAPVEAIPAAHQLLARHYRFPVACYAWT
Ga0184624_103014032	3300018073	Groundwater Sediment	MTRTVAPWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPMEAIPAAYQLLTRHYRFPVTCYVWS
Ga0190265_118980582	3300018422	Soil	MPRTGAPWREPAATDRCTTAVAAVARDLFTWHRRGVTVRMVEPTGDGGVLLGVDAPVEAIPAAQHLL
Ga0190265_121778541	3300018422	Soil	MPRTGAPWREPAATDRCSAAVAAVARDLFTWHRRGVTVRMVEPTGDGGVLLGVDAPVEAIPAAQHLLFRHYRFPVTCYAWA
Ga0190265_128324041	3300018422	Soil	MPRTGAPWREPAATDRCTTAVAAVARDLFTWHRRGVTVRMVEPTVDGGVLLGVDAPVEAIPAAQHLLFRHYRFPVTCYAWA
Ga0190265_131015791	3300018422	Soil	MNRTGAPWREPAATARCTASVAAVARDLFTWHRRGVTVRMVEPTRDGGVLLGVDAPVEAIPAAHQLLARHYRFPVACYAWT
Ga0190272_118362701	3300018429	Soil	MNRTGAPWREPAATDRCIASVAAVARDLFTWHRRGVTVRMVEPTVDGGVLLGVDAPVEAIPAAQHLLFRHYRFPVTCYAWA
Ga0190275_102355531	3300018432	Soil	MPRTGAPWREPAATDRCTAAVAAVARDLFTWHRRGVTVRMVEPTGDGGVLLGVDAPVEAIPAAQHLLFRHYRFPVTCYAWA
Ga0190269_116902251	3300018465	Soil	MPRTGAPWREPAVTDRCTAAVAAVARDLFTWHRRGVTVRMVEPTGDGGVLLGVDAPVEAIPAVQH
Ga0190271_102024041	3300018481	Soil	MNRTGAPWREPAATDRCTASVAAVARDLFTWHRRGVTVRMVEPTRDGGVLLGVDAPLEAIPAAHQLLARHYRFPVACYAWT
Ga0190267_113866061	3300019767	Soil	MPRTGASWREPAATDRCTTAVAAVARDLFTWHRRGVTVRMVEPTVDGGVLLGVDAPVEAIPAAQHLLFRHYRFPVTCYAWA
Ga0206353_111440441	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPDGDGVLLGVDAPVEAIPAAHLQLTRHYRFPVTCYSWS
Ga0207688_104189292	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MNRTGAPWREPAATDRCTASVAAVARDLFTWHRRGVTVRMVEPTRDGGVLLGVDAPVEAIPAANQLLARHYRFPVACYSWS
Ga0207654_113797621	3300025911	Corn Rhizosphere	DRCTASVAAVARDLFTWHRRGITVRMVEPDGEGVLLGVDAPLEAIPAAHLQLTRHYRFPVTCYSWS
Ga0207657_102165002	3300025919	Corn Rhizosphere	MTRTAALWREPATSDRCTASVAAVARDLFTWHRRGITVRMVEPDGDGVLLGVDAPLEAIPAAHMQLTRHYRFPVTCYAWT
Ga0207649_106630472	3300025920	Corn Rhizosphere	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPVTCYVWS
Ga0207650_112631811	3300025925	Switchgrass Rhizosphere	MTRTAALWREPATSDRCTASVAAVARDLFTWHRRGITVRMVEPDGEGVLLGVDAPLEAIPAAHLQLTRHYRFPVTCYSWS
Ga0207687_101388103	3300025927	Miscanthus Rhizosphere	MTRTVAPWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPVTCYVWS
Ga0207690_107140352	3300025932	Corn Rhizosphere	DRCTASVAAVARDLFTWHRRGITVRMVEPDGDGVLLGVDAPLEAIPAAHMQLTHHYRFPVTCYSWT
Ga0207686_113245482	3300025934	Miscanthus Rhizosphere	PMTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPVTCYVWS
Ga0207670_116350061	3300025936	Switchgrass Rhizosphere	TRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPDGEGVLLGVDAPLEAIPAAHLQLTRHYRFPVTCYSWS
Ga0207669_103201692	3300025937	Miscanthus Rhizosphere	MPRTGAPWREPAATDRCTAAVAAVARDLFTWHRRGITVRMVEPDGDGVLLGVDAPLEAIPAAHMQLTRHYRFPVTCYAWT
Ga0207661_105721772	3300025944	Corn Rhizosphere	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPDGDGVLLGVDAPPEAIPAAHMQLTHHYRFPVTCYSWT
Ga0207679_109813671	3300025945	Corn Rhizosphere	MNRTGAPWREPAATDRCTASVAAVARDLFTWHRRGVTVRMVEPTRDGGVLLGVDAPIEAIPAAHQLLA
Ga0207640_103501602	3300025981	Corn Rhizosphere	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPDGDGVLLGVDAPLEAIPAAHMQLTRHYRFPVTCYAWT
Ga0207677_109735661	3300026023	Miscanthus Rhizosphere	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPDGDGVLLGVDAPLEAIPAAHMQLTRHYRFPVTCYSWS
Ga0207703_110488072	3300026035	Switchgrass Rhizosphere	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMAEPDGDGVLLGVDAPLEAIPAAHMQLTRHYRFPVTCYAWT
Ga0207678_101670611	3300026067	Corn Rhizosphere	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPDGEGVLLGVDAPLEAIPAAHMQLTRHYRFPVTCYSWT
Ga0207708_100505204	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MTRTGAPWREPTASDRCTASVAAVARDLFTWHRRGITVRMVEPDGEGVLLGVDAPLEAIPAAHMQLTHHYRFPVTCYSWT
Ga0268266_114955141	3300028379	Switchgrass Rhizosphere	MPRTGAPWREPAATDRCTAAVAAVARDLFTWHRRGVTVRMVEPTGDGGVLLGVDAPVEAIPAAQHLLFRHYRFPVTCYPWA
Ga0247828_106777481	3300028587	Soil	PMNRTGAPWREPAATDRCTASVAAVARDLFTWHRRGVTVRMVEPTRDGGVLLGVDAPLEAIPAAHQLLARHYRFPVACYAWT
Ga0247818_106341852	3300028589	Soil	MARTVAPWREPSAADRCTSAVSAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQVLTRHYRFPVTCYVWS
Ga0247818_111055321	3300028589	Soil	MNRTGAPWREPAATDRCTASVAAVARDLFTWHRRGVTVRMVEPTRDGGVLLGVDAPLEAIPAAHQL
Ga0247821_100655234	3300028596	Soil	MTRTAAPWREPSTTDRCTASVAAVARDLFTWHRRGITVRMVEPTGDEGVLLGVDAPVEAIPAVHQ
Ga0247821_105732102	3300028596	Soil	MNRTGAPWREPAATDRCTASVAAVARDLFTWHRRGVTVRMVEPTRDGGVLLGLEAPIEAIPAANQLLARHYRFPVVCYAWT
Ga0247820_105313272	3300028597	Soil	MNRTGAPWRRAPATDRCTASVAAVARDLFTWHRRGVTVRMVEPTRDGGVLLGVDAPLEAIPAAHQLLARHYRFPVACYAWT
Ga0247820_110126832	3300028597	Soil	MTRTVAPWREPSATDRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPVTCYVWS
Ga0247820_113824111	3300028597	Soil	MTRTAAPWREPSTTDRCTASVAAVARDLFTWHRRGITVRMVEPTGDEGVLLGVDAPVEAIPAVHQLLVRHYRFPVTCYAWT
Ga0247824_104908512	3300028809	Soil	MNRTGAPWREPAATDRCTASVAAVARDLFTWHRRGVTVRMVEPTRDGGVLLGVDAPIEAIPAAHQLLARHYRFPVACYAWT
Ga0307294_100187941	3300028810	Soil	RCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQVLTRHYRFPVTCYVWS
Ga0247825_110402842	3300028812	Soil	MTRTVAPWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPAEAIPAAYQLLTRHYRFPVTCYVWS
Ga0247825_112544931	3300028812	Soil	MNRTGAPWREPAATDRCTASVAAVARDLFTWHRRGVTVRMVEPTRDGGVLLGVDAPIEAIPAANQLLARHYRFPVVCYAWT
Ga0247826_102635293	3300030336	Soil	PWREPAATDRCTASVAAVARDLFTWHRRGVTVRMVEPTRDGGVLLGVDAPIEAIPAAHQLLARHYRFPVACYAWT
Ga0310887_100521253	3300031547	Soil	MTRTVALWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPVTCYVWS
Ga0307407_107632572	3300031903	Rhizosphere	PKADRPKEFARPRTGAPWREPAATDRCTAAVAAVARDLFTWHRRGVTVRMVEPTGDGGVLLGVDAPVEAIPAAQHLLFRHYRFPVTCYAWA
Ga0308175_1008013552	3300031938	Soil	MTRTVAPWREPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQLLTRHYRFPVSCYVWS
Ga0326721_101440763	3300032080	Soil	AATDRCTASVAAVARDLFTWHRRGVTVRMVEPTRDGGVLLGVDAPIEAIPAAHQLLARHYRFPVACYAWT
Ga0326721_104137681	3300032080	Soil	MTRTGVPWREPAADDRCTASVAAVARDLFAWHRRGVTVRMVEPTHDEGVLLGVDAPVEAIPAVHQLLARHYRFPVTCYAWT
Ga0326721_104250322	3300032080	Soil	MTRTGTPWRDPSAADRCTASVAAVARDLFTWHRRGVTVRMVEPAGDDGVLLGVDAPVEAIPSVHQLLSRHYGFPVTCYAWA
Ga0247830_101299443	3300033551	Soil	MTRTVAPWRDPSAADRCTTAVAAVARDLFTWHRRGITVRMVEPTGDGGVLLGVDAPVEAIPAAYQVLTRHYR
Ga0247830_102574373	3300033551	Soil	VNRSRATDRCTASVAAVARDLFTWHRRGVTVRMVEPTRDGGVLLGVDAPIEAIPAAHQLLARHYRFPVACYAWT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091994

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences