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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F091985 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 107 |
| Average Sequence Length | 50 residues |
| Representative Sequence | MIAVVLLVAGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRFMQPN |
| Number of Associated Samples | 94 |
| Number of Associated Scaffolds | 107 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 60.00 % |
| % of genes near scaffold ends (potentially truncated) | 4.67 % |
| % of genes from short scaffolds (< 2000 bps) | 2.80 % |
| Associated GOLD sequencing projects | 92 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.25 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (95.327 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.888 % of family members) |
| Environment Ontology (ENVO) | Unclassified (24.299 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (50.467 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Fibrous | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 24.66% β-sheet: 0.00% Coil/Unstructured: 75.34% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.25 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 107 Family Scaffolds |
|---|---|---|
| PF00881 | Nitroreductase | 12.15 |
| PF14226 | DIOX_N | 1.87 |
| PF00571 | CBS | 1.87 |
| PF00589 | Phage_integrase | 0.93 |
| PF07729 | FCD | 0.93 |
| PF08937 | DUF1863 | 0.93 |
| PF03129 | HGTP_anticodon | 0.93 |
| PF00211 | Guanylate_cyc | 0.93 |
| PF09509 | Hypoth_Ymh | 0.93 |
| PF01613 | Flavin_Reduct | 0.93 |
| COG ID | Name | Functional Category | % Frequency in 107 Family Scaffolds |
|---|---|---|---|
| COG0124 | Histidyl-tRNA synthetase | Translation, ribosomal structure and biogenesis [J] | 0.93 |
| COG0423 | Glycyl-tRNA synthetase, class II | Translation, ribosomal structure and biogenesis [J] | 0.93 |
| COG0441 | Threonyl-tRNA synthetase | Translation, ribosomal structure and biogenesis [J] | 0.93 |
| COG0442 | Prolyl-tRNA synthetase | Translation, ribosomal structure and biogenesis [J] | 0.93 |
| COG1802 | DNA-binding transcriptional regulator, GntR family | Transcription [K] | 0.93 |
| COG1853 | FMN reductase RutF, DIM6/NTAB family | Energy production and conversion [C] | 0.93 |
| COG2114 | Adenylate cyclase, class 3 | Signal transduction mechanisms [T] | 0.93 |
| COG2186 | DNA-binding transcriptional regulator, FadR family | Transcription [K] | 0.93 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 95.33 % |
| All Organisms | root | All Organisms | 4.67 % |
| Visualization |
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| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300005332|Ga0066388_100215308 | All Organisms → cellular organisms → Bacteria | 2548 | Open in IMG/M |
| 3300005764|Ga0066903_105674428 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 656 | Open in IMG/M |
| 3300009792|Ga0126374_11488834 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 555 | Open in IMG/M |
| 3300018468|Ga0066662_10060082 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2481 | Open in IMG/M |
| 3300026498|Ga0257156_1033137 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1048 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 15.89% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 14.95% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 10.28% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 8.41% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 7.48% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 4.67% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 3.74% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 3.74% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 2.80% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 2.80% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 2.80% |
| Populus Endosphere | Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere | 2.80% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 1.87% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 1.87% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 1.87% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 1.87% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 1.87% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 1.87% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 0.93% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 0.93% |
| Soil | Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil | 0.93% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 0.93% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 0.93% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.93% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 0.93% |
| Tropical Rainforest Soil | Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil | 0.93% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000559 | Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly | Environmental | Open in IMG/M |
| 3300000655 | Forest soil microbial communities from Amazon forest - 2010 replicate II A100 | Environmental | Open in IMG/M |
| 3300000837 | Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100 | Environmental | Open in IMG/M |
| 3300000890 | Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil | Environmental | Open in IMG/M |
| 3300001164 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 | Environmental | Open in IMG/M |
| 3300001991 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2 | Host-Associated | Open in IMG/M |
| 3300002568 | Grasslands soil microbial communities from Hopland, California, USA - 2 | Environmental | Open in IMG/M |
| 3300005164 | Soil and rhizosphere microbial communities from Laval, Canada - mgLAC | Environmental | Open in IMG/M |
| 3300005178 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005363 | Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Environmental | Open in IMG/M |
| 3300005559 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 | Environmental | Open in IMG/M |
| 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Host-Associated | Open in IMG/M |
| 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Host-Associated | Open in IMG/M |
| 3300005615 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG | Environmental | Open in IMG/M |
| 3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Host-Associated | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Host-Associated | Open in IMG/M |
| 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Environmental | Open in IMG/M |
| 3300006038 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Host-Associated | Open in IMG/M |
| 3300006051 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Host-Associated | Open in IMG/M |
| 3300006604 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006606 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006847 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Host-Associated | Open in IMG/M |
| 3300006880 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Host-Associated | Open in IMG/M |
| 3300007258 | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 | Environmental | Open in IMG/M |
| 3300009094 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009792 | Tropical forest soil microbial communities from Panama - MetaG Plot_12 | Environmental | Open in IMG/M |
| 3300010358 | Tropical forest soil microbial communities from Panama - MetaG Plot_3 | Environmental | Open in IMG/M |
| 3300010359 | Tropical forest soil microbial communities from Panama - MetaG Plot_15 | Environmental | Open in IMG/M |
| 3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
| 3300012204 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG | Environmental | Open in IMG/M |
| 3300012208 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG | Environmental | Open in IMG/M |
| 3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
| 3300012357 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG | Environmental | Open in IMG/M |
| 3300012362 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG | Environmental | Open in IMG/M |
| 3300012939 | Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015 | Environmental | Open in IMG/M |
| 3300012944 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012951 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG | Environmental | Open in IMG/M |
| 3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
| 3300012988 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG | Environmental | Open in IMG/M |
| 3300015077 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2) | Environmental | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300016270 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 | Environmental | Open in IMG/M |
| 3300016294 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 | Environmental | Open in IMG/M |
| 3300016371 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 | Environmental | Open in IMG/M |
| 3300016445 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 | Environmental | Open in IMG/M |
| 3300017657 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015 | Environmental | Open in IMG/M |
| 3300018433 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116 | Environmental | Open in IMG/M |
| 3300018468 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111 | Environmental | Open in IMG/M |
| 3300018469 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T | Environmental | Open in IMG/M |
| 3300019356 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2) | Environmental | Open in IMG/M |
| 3300020001 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2 | Environmental | Open in IMG/M |
| 3300020005 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2 | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300026332 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes) | Environmental | Open in IMG/M |
| 3300026361 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B | Environmental | Open in IMG/M |
| 3300026498 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A | Environmental | Open in IMG/M |
| 3300026547 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes) | Environmental | Open in IMG/M |
| 3300027502 | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027882 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027907 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028710 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380 | Environmental | Open in IMG/M |
| 3300028713 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184 | Environmental | Open in IMG/M |
| 3300028718 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194 | Environmental | Open in IMG/M |
| 3300028744 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367 | Environmental | Open in IMG/M |
| 3300028784 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121 | Environmental | Open in IMG/M |
| 3300028802 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S | Environmental | Open in IMG/M |
| 3300031199 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S | Environmental | Open in IMG/M |
| 3300031421 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031545 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26 | Environmental | Open in IMG/M |
| 3300031682 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22 | Environmental | Open in IMG/M |
| 3300031713 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22 | Environmental | Open in IMG/M |
| 3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
| 3300031723 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23 | Environmental | Open in IMG/M |
| 3300031744 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2) | Environmental | Open in IMG/M |
| 3300031777 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24 | Environmental | Open in IMG/M |
| 3300031780 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21 | Environmental | Open in IMG/M |
| 3300031781 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20 | Environmental | Open in IMG/M |
| 3300031833 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178 | Environmental | Open in IMG/M |
| 3300031880 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25 | Environmental | Open in IMG/M |
| 3300031890 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2) | Environmental | Open in IMG/M |
| 3300031897 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16 | Environmental | Open in IMG/M |
| 3300031945 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082 | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300032060 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18 | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| 3300033289 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108 | Environmental | Open in IMG/M |
| 3300033550 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| F14TC_1020694102 | 3300000559 | Soil | MPWLRHLLPMVLLASIPAADAAPLVPPSDLPGRERYRFTPSPLDRFMQ |
| AF_2010_repII_A100DRAFT_10212761 | 3300000655 | Forest Soil | MMGRFCSAAVILLIAGIAAAEAGPLVPSGDLPGRERYQFTPSPLDRFMQPQP |
| AP72_2010_repI_A100DRAFT_10156111 | 3300000837 | Forest Soil | MAWLRRVAIVLLVAGIPAAEAAPLVPSGDLPGRERYRFTPSPLDRFMQPNP |
| JGI11643J12802_112129311 | 3300000890 | Soil | MALCPPIAVILLLVLTSATYAAPLVPPSDQPGRERYRFEPSPLDRFMQPN |
| JGI11823J13286_10120181 | 3300001164 | Forest Soil | MALRPAIAVILLIVVTPAAYAAPLVPPSDQPGRERYRFEPSPL |
| JGI24743J22301_100246722 | 3300001991 | Corn, Switchgrass And Miscanthus Rhizosphere | MVWRIAPVLLLASTVAAAAAPLVPPSDQAGRERYRFTPSTLDRFMEPNPPAKPLLRWDCD |
| C688J35102_1183595592 | 3300002568 | Soil | MVWRIAPVLLLAGTVTAAAAPLVPPSDQAGRERYRFTPSPLDRFMEPNPPA |
| Ga0066815_101059041 | 3300005164 | Soil | MRVTASMVWRIAPVLLLAGTVTAAAAPLVPPSDQAGRERYRFTPSPLDRFMEPNPPAKPL |
| Ga0066688_100712453 | 3300005178 | Soil | MWLRRIAVAVLVAGIPAGNAAPLVAPGDQPGRERYRFTPSPLEGFMQPAPPDRPLLRWDCSRR |
| Ga0066388_1002153081 | 3300005332 | Tropical Forest Soil | MSSLRMIAVVLLVVGIPAAEAAPLVPSSDLPGRERYRFTPSPL |
| Ga0066388_1007254114 | 3300005332 | Tropical Forest Soil | MSWLRMIAVVLLVVGIPAAEAAPLVPSSDLPGRERYRFTP |
| Ga0070675_1002384923 | 3300005354 | Miscanthus Rhizosphere | MVWRIAPVLLLASTVAAAAAPLVPPSDQAGRERYRFTPSPL |
| Ga0008090_102272702 | 3300005363 | Tropical Rainforest Soil | MHRIILLIAGIAAAEAAPLVPSGDLPGRERYRFTPSPLDRFMQPT |
| Ga0070663_1000871224 | 3300005455 | Corn Rhizosphere | MVWRIAPVLLLASTVAAAAAPLVPPSDQAGRERYRFTPSPLDRFMEPNPPA |
| Ga0070707_1008204972 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | MVWRIAPVLLLASTVTAAAAPLVPPSDQAGRERYRFTPSPLDRFMQPNPPARPLLRWDLESAAQGG* |
| Ga0066700_104678032 | 3300005559 | Soil | MMLLASISAADAAPLVPPSDLPGRERYRFTPSPLD |
| Ga0068855_1019390471 | 3300005563 | Corn Rhizosphere | MALRDRVAIILLLLVTSADAAPLVPPSDQPGRERYRFEPSPLDRFMRP |
| Ga0070664_1012038812 | 3300005564 | Corn Rhizosphere | MVWRIAPVLLLASTVAAAAAPLVPPSDQAGRERYRFTPSPLDRFM |
| Ga0068854_1000655101 | 3300005578 | Corn Rhizosphere | MVWRIAPVLLLASTVAAAAAPLVPPSDQAGRERYRF |
| Ga0070702_1002373872 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | MVWRIAPVLLLASTVAAAAAPLVPPSDQAGRERYRFTPSPLDRFMEPNPPAKPLLRWDCD |
| Ga0068866_100422664 | 3300005718 | Miscanthus Rhizosphere | MVWRIAPVLLLASTVAAAAAPLVPPSDQAGRERYRFTPSPLDRFMEPNPPAKPLLRWDCDER |
| Ga0066903_1056744282 | 3300005764 | Tropical Forest Soil | MSWLRMIAVVLLVVGIPAAEAAPLVPSRDLPGRERYRFTPSPLDRFMQPNPPARPLL |
| Ga0066903_1065930312 | 3300005764 | Tropical Forest Soil | MIAVVLLVAGIPAAEAAPLAPSSDLPGRERYRFTPSPLDRFMQPNPPARPLLHCGPRGG |
| Ga0068870_107382401 | 3300005840 | Miscanthus Rhizosphere | MVWRIAPVLLLASTVAAAAVPLVPPSDQAGRERYRFTPSPLDRFMEPNPPAKPLLRWDCDER |
| Ga0070717_111841552 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MIAVVLLIAGIGAAEAAPLVPSGDLPGRERYRFTPSPLDRFMQ |
| Ga0075365_106386701 | 3300006038 | Populus Endosphere | MVWRIALILLLASTVTATAAPLVPPSDQAGRERYRFTPSPLDRFMEPNPPAKPLL |
| Ga0075365_110577352 | 3300006038 | Populus Endosphere | MVLRIVPVLLLAGTVTAASAPLVPPSDQAGRERYRFTPSPLDRFMEP |
| Ga0075364_105183332 | 3300006051 | Populus Endosphere | MALRDRVAIILLLLVTSADAAPLVPPSDQPGRERYRFEPSPLDRFMRPTPPPKPLL |
| Ga0074060_120117692 | 3300006604 | Soil | MIAVVLLIAGIGAAEAAPLVPSGDLPGRERYRFTPSPLDRFMQPNPPARPLL |
| Ga0074062_100315741 | 3300006606 | Soil | MVWRIAPVLLLASTVTVAAAPLVPPSDQAGRERYR |
| Ga0075431_1022354001 | 3300006847 | Populus Rhizosphere | MKAPLSRIAAILLVCGVSAAEAAPLVPPSDQAGRERYRFTPSPLDRFMQPQPRVKPLLRWDCD* |
| Ga0075429_1011692101 | 3300006880 | Populus Rhizosphere | MRVPATMVWSIAALVLLAGTAAAAAAPLVPPSDQAGRE |
| Ga0099793_103159851 | 3300007258 | Vadose Zone Soil | VTVLVAGIPAANAAPLVPPGDQPGRERYRFTPSPLDRFMPPAPPERPLLRWGC |
| Ga0111539_109890862 | 3300009094 | Populus Rhizosphere | MVWRIAPVLLLASTVAAAAAPLVPPSDQAGRERYRFTPSPLDRFMEPNPPAKPLLR* |
| Ga0126374_114888342 | 3300009792 | Tropical Forest Soil | MWWLRRITVAVLVAGIPAANAAPLVPPDDQPGRERYRFTPSPLERFMQPAPPERPLLRWDCGRHSASRW |
| Ga0126370_119655801 | 3300010358 | Tropical Forest Soil | MLVAGLSTATAAPLVPSSELPGRQRERFTPSPLDPF |
| Ga0126376_100752171 | 3300010359 | Tropical Forest Soil | MGWLRRIAIVFLIAGIPAAEAAPLVPSSDLPGRERYRSTPSPLDRFMQPNPPARPLLRWE |
| Ga0126376_104075542 | 3300010359 | Tropical Forest Soil | MNWLYRAAAMLLAAGLTAAAAQPLVPPSDQAGRERYRFNPSPIDRFMQPQ |
| Ga0126379_110458262 | 3300010366 | Tropical Forest Soil | MGWLRSIAIVLLIAGIPAAQAAPLVPSGDLPGRERYRFTPSPLDRFMQPN |
| Ga0126379_121962312 | 3300010366 | Tropical Forest Soil | MSRLRMIAVVLLIAGIPAAEAAPLVPSGDLPGRER* |
| Ga0137374_105698051 | 3300012204 | Vadose Zone Soil | MVLLASIPAADAGPLVPPSDLPGRERYRFTPSPLDRFMQPTP |
| Ga0137376_105442201 | 3300012208 | Vadose Zone Soil | MMLLASISAADAAPLVPPSDLPGRERYRFTPSPLDRFMQPNPPVKPLLRWDCD |
| Ga0150985_1103481892 | 3300012212 | Avena Fatua Rhizosphere | MVWRIAPVLLLASTVAAAAAPLVPPRDQAGPERHPFTPSPLHRFTEPNPPA |
| Ga0137384_100900841 | 3300012357 | Vadose Zone Soil | MWLRRIAVTVLVAGIPAGNAAPLVAPGDQPGRERYRFTPSPLEGFMQPAPLGRPLLRWDC |
| Ga0137384_104473032 | 3300012357 | Vadose Zone Soil | MGWLRRIAIVLLIAGIPAAEAAPLVPSGDLPGRERYRFTPSPL |
| Ga0137361_102058543 | 3300012362 | Vadose Zone Soil | VVLLIAGIGAPEAAPLVPSGDLPGRERYRFTPSPLDRFMQPNPP |
| Ga0162650_1000461861 | 3300012939 | Soil | MVWRIAPVLLIAGTVTAAAAPLVPPSDQAGRERYRFTPSPLD |
| Ga0137410_108329571 | 3300012944 | Vadose Zone Soil | MACFYRIAAILLIAGISAAGAAPLVPPSDQPGRERYRFTPSPLDRFMQPN |
| Ga0164300_103358681 | 3300012951 | Soil | MVWRIAPVLLLASTVAAAAAPLVPPSDQAGRERYRFTPSTLDRFMEPNPP |
| Ga0126369_115688572 | 3300012971 | Tropical Forest Soil | MGRFCSAAVILLIAGIAAAEAAPLVPSGDLPGRERYRFTPSPLDRFMQPNPPAR |
| Ga0164306_106163811 | 3300012988 | Soil | MALRDRVAIILLLLVTSADAAPLVPPSDQPGRERYRFEPSPLDR |
| Ga0173483_105114422 | 3300015077 | Soil | MALRDRVAIILLLLVTSADAAPLVPPSDQPGRERYRFEPSPLDRFMRPSPPPKPLLR |
| Ga0132255_1009764953 | 3300015374 | Arabidopsis Rhizosphere | MAWRIAALVLLAGTSAAAAAPLLVPPSDQAGRERYRFEPSPLDRFM |
| Ga0182036_111717061 | 3300016270 | Soil | MIAVVLLVVGIPAAEAAPLVPSSDLPGRERYRFTPSPLDR |
| Ga0182041_100769301 | 3300016294 | Soil | MIAVVLLVVGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRFMQPNPPAR |
| Ga0182034_106366841 | 3300016371 | Soil | MIAVVLLVVGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRFMQPNRP |
| Ga0182034_112236491 | 3300016371 | Soil | MIAVVLLVVGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRFMQPNPPARPLLQWDCGPRGGW |
| Ga0182038_114111331 | 3300016445 | Soil | MIAVVLLVAGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRFMQPN |
| Ga0134074_12523852 | 3300017657 | Grasslands Soil | MIAVVLLIAGIGAAEAAPLVPSGDLPGRERYRFTPSPLDRFMQPNPPARS |
| Ga0066667_115240051 | 3300018433 | Grasslands Soil | MTLRYGIAIIALLALTSAAAAGPLVPPSDLPGRERYRFEP |
| Ga0066662_100600821 | 3300018468 | Grasslands Soil | MMLLASISAADAAPLVPPSDLPGRERYRFTPSPLDRFMQ |
| Ga0066662_100691514 | 3300018468 | Grasslands Soil | MIAVVLLIAGIGAAEAAPLVPSGDLPGRERYRFPP |
| Ga0190270_124754202 | 3300018469 | Soil | MTSLHRIAAILLIAGMSAADAAPAVPPSDMPGRERERFTPSPLDRFMQPSRPAEPLL |
| Ga0190270_129667971 | 3300018469 | Soil | MALCPPIAVILLLVLTSATYAAPLVPPSDQPGRERYRFEPSP |
| Ga0173481_100386353 | 3300019356 | Soil | MVWRIAPVLLLASTVAAAAAPLVPPSDQAGRERYRFTPSPLDRF |
| Ga0193731_10060335 | 3300020001 | Soil | MVWRIAAVLLFAGTAAAAPLVPPSDQAGRERYRFEPSPLDRFM |
| Ga0193697_11565202 | 3300020005 | Soil | MALCPPIAVILLLVLTSATYAAPLVPPSDQPGRER |
| Ga0126371_121309441 | 3300021560 | Tropical Forest Soil | MGWLRSIAIVLLIAGILAAQAAPLVPSGDLPGRARYRFTPSPLDRFMQPNPPAKPLLRWDCGE |
| Ga0209803_12135771 | 3300026332 | Soil | MIAVVLLIAGIGAAEAAPLVPSGDLPGRERYRFTPSPLDRFMQPNPPA |
| Ga0257176_10546472 | 3300026361 | Soil | VVLLIAGIGAPEAAPLVPSGDLPGRERYRFTPSPLDRFMQPNPPARP |
| Ga0257156_10331371 | 3300026498 | Soil | MSWLRRIAVTVLLAGIPAANAAPLVPPGDQPGRERYRFTPSPLDRFMQPAPPERPLLRWGCGRRSV |
| Ga0209156_100468433 | 3300026547 | Soil | MWLRRIAVAVLVAGIPAGNAAPLVAPGDQPGRERYRFTPSPLEGFMQPAPPDRPLLRWD |
| Ga0209622_10025351 | 3300027502 | Forest Soil | MNWLRMIAVVFLIAGIGAAEAAPLVPSGDLPGRERYRFTPSPLDRFMQPNPP |
| Ga0209590_102598961 | 3300027882 | Vadose Zone Soil | VELIHTFRLTVLLLVAGLSAAATAAPLVPSSELPGRQRERFTPSPLDRFMQPS |
| Ga0209590_110217022 | 3300027882 | Vadose Zone Soil | MSWLRRIAVTVLLAGIPAANAAPLVPPGDQPGRERYRFTPSPLDRFMPPAPPER |
| Ga0207428_112836331 | 3300027907 | Populus Rhizosphere | MVWRIAPVLLLASTVAAAAAPLVPPSDQAGRERYRFTPSP |
| Ga0307322_100588762 | 3300028710 | Soil | MALCPPIAVILLLVLTSATYAAPLVPPSDQPGRERYRFEPSPLDRFIEPRPPAKPLLRWDCD |
| Ga0307303_100276692 | 3300028713 | Soil | MALRPPIAVILLLVLTSATYAAPLVPPSDQPGRERYRFEPSPLDRFIEPRPPAK |
| Ga0307307_100364462 | 3300028718 | Soil | MVWRIAAVLLFAGTAAAAPLVPPSDQAGRERYRFEPSPLDRFMQPNPPAKPLLRWDCDQRVS |
| Ga0307318_100950501 | 3300028744 | Soil | MVWRIAPVLLLASTVAAAAAPLVPPSDQAGRERYRFTPSPLDRFMEPNPPAKPLLRWD |
| Ga0307282_100505733 | 3300028784 | Soil | MALRPPIAVILLLVLTSATYAAPLVPPGDQPGRERYRFEPSPLDRFIGPRPPAKPL |
| Ga0307503_103942772 | 3300028802 | Soil | MVWRIAAILVLAGTSAAAAAPLVPPSDQSGRERYRFTPSPLDRFMEPNPPAKPL |
| Ga0307495_102235051 | 3300031199 | Soil | MALCPPIAVILLLVLTSATYAAPLVPPSDQPGRERYRFEPSPLDRFIEPRPPAKPLLRWDCDE |
| Ga0308194_102147391 | 3300031421 | Soil | MALRPPIAVILLLVLTSATYAAPLVPPSDQPGRERYRFEPSPLDRFIQPRP |
| Ga0318541_105782781 | 3300031545 | Soil | MIAVVLLVAGIPAAEAAPLVPSGDLPGRERYRFTPSPLDRFMQPNPP |
| Ga0318560_103358331 | 3300031682 | Soil | MIAVVLLVVGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRFMQPNPPARPLLQ |
| Ga0318560_108215841 | 3300031682 | Soil | MIAVVLLVVGIPAAEAAPLVPSGDLPGRERYRFTPSPLDRFMQPNPPARP |
| Ga0318496_106086912 | 3300031713 | Soil | MGWLRRIAIVLLIAGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRFMQPNPPARPLLRGV |
| Ga0306917_108953101 | 3300031719 | Soil | MIAVVLLVVGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRFMQPIPPARPL |
| Ga0306917_110214641 | 3300031719 | Soil | MIAVALLVVGIPAAEAAPLVPSSDLPGRERYRFTPSPLD |
| Ga0318493_104131292 | 3300031723 | Soil | MMGRFCSTAVILLIAGIAAAEAAPLVPSGDLPGRERYRFTPSPLDRFM |
| Ga0306918_101944942 | 3300031744 | Soil | MIAVVLLVVGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRFMQ |
| Ga0318543_101843983 | 3300031777 | Soil | MSWLRMIAVVLLVVGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRFMQPNPPARP |
| Ga0318508_11499372 | 3300031780 | Soil | MIAVVLLVAGIPAAEAAPLVPSGDLPGRERYRFTPSPLDRFM |
| Ga0318547_108546252 | 3300031781 | Soil | MSRLRMIAVVLLIAGIPAAEAAPLVPSGDLPGRER |
| Ga0310917_108820941 | 3300031833 | Soil | MIAVVLLVVGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRFMQPN |
| Ga0318544_102358163 | 3300031880 | Soil | MSWLRMIAVVLLVAGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRFMQPNPPARP |
| Ga0306925_121652621 | 3300031890 | Soil | MIAVVLLVVGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRFM |
| Ga0318520_104934611 | 3300031897 | Soil | MSWLRMIAVVLLVVGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRFMQPNPPARPLLQWD |
| Ga0310913_102270842 | 3300031945 | Soil | MIAVVLLVVGIPAAEAAPLVPSRDLPGRERYRFTPSPLDRFMQPN |
| Ga0306926_125556802 | 3300031954 | Soil | MGWLRRIAVILLIAGISAAEAAPLVPSGDLPGRERYRFTPSPLDRFMQLNPPARPLLRWDCGEPAHGG |
| Ga0318505_105333471 | 3300032060 | Soil | MIAVVLLVVGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRF |
| Ga0307471_1013071222 | 3300032180 | Hardwood Forest Soil | MIAVVLLIAGIGAAEAAPLVPSGDLPGRERYRFTPSPLDRFMQPNPPARPLLQWD |
| Ga0306920_1003040431 | 3300032261 | Soil | MIAVVLLVVGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRFMQPNPPARP |
| Ga0310914_112093611 | 3300033289 | Soil | MIAVVLLVVGIPAAEAAPLVPSSDLPGRERYRFTPSPLDRFMQPI |
| Ga0310914_115993531 | 3300033289 | Soil | VVLLAAGIPAAEAAPLVPSGDLPGRERYRFAPSPLDRFMQPNPSARP |
| Ga0247829_102403731 | 3300033550 | Soil | MVWRIAPVLLLASTVAAAAAPLVPPSDQAGRERYRFTPSPLDRFMEPNPPAKPLLRWDC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |