NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F091983

Metagenome / Metatranscriptome Family F091983

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F091983
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 52 residues
Representative Sequence MAPKSNKSFAKATTKLGLATVIAALWMTAVPITGAVADVQISAARAQAI
Number of Associated Samples 77
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 97.06 %
% of genes near scaffold ends (potentially truncated) 95.33 %
% of genes from short scaffolds (< 2000 bps) 85.98 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction Yes
3D model pTM-score0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (59.813 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(28.972 % of family members)
Environment Ontology (ENVO) Unclassified
(44.860 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(54.206 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 57.14%    β-sheet: 0.00%    Coil/Unstructured: 42.86%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF03734YkuD 7.48
PF08857ParBc_2 2.80
PF01068DNA_ligase_A_M 2.80
PF12800Fer4_4 1.87
PF12071DUF3551 1.87
PF13458Peripla_BP_6 0.93
PF10518TAT_signal 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG1376Lipoprotein-anchoring transpeptidase ErfK/SrfKCell wall/membrane/envelope biogenesis [M] 7.48
COG3034Murein L,D-transpeptidase YafKCell wall/membrane/envelope biogenesis [M] 7.48
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 2.80
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 2.80
COG4318Uncharacterized conserved proteinFunction unknown [S] 2.80


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A59.81 %
All OrganismsrootAll Organisms40.19 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001545|JGI12630J15595_10026272All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1215Open in IMG/M
3300001545|JGI12630J15595_10050934All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria828Open in IMG/M
3300002245|JGIcombinedJ26739_101725008All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium526Open in IMG/M
3300005181|Ga0066678_11102272Not Available511Open in IMG/M
3300005363|Ga0008090_15808724All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300005406|Ga0070703_10453025Not Available569Open in IMG/M
3300005440|Ga0070705_101936400Not Available502Open in IMG/M
3300005467|Ga0070706_101936164All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium534Open in IMG/M
3300005713|Ga0066905_102058547Not Available530Open in IMG/M
3300005764|Ga0066903_101972453All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1120Open in IMG/M
3300005764|Ga0066903_102452179Not Available1009Open in IMG/M
3300005764|Ga0066903_107184886All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria576Open in IMG/M
3300005937|Ga0081455_10048924All Organisms → cellular organisms → Bacteria3648Open in IMG/M
3300006606|Ga0074062_12047508All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria512Open in IMG/M
3300006904|Ga0075424_101107669Not Available844Open in IMG/M
3300009162|Ga0075423_12412061Not Available573Open in IMG/M
3300010043|Ga0126380_12245296Not Available505Open in IMG/M
3300010046|Ga0126384_10747642Not Available871Open in IMG/M
3300010046|Ga0126384_10898226All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium800Open in IMG/M
3300010046|Ga0126384_11909696Not Available566Open in IMG/M
3300010047|Ga0126382_10469558All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacterales Family III. Incertae Sedis → Syntrophaceticus → Syntrophaceticus schinkii1003Open in IMG/M
3300010048|Ga0126373_10307887All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1582Open in IMG/M
3300010048|Ga0126373_10832758All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria985Open in IMG/M
3300010048|Ga0126373_12748904All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300010358|Ga0126370_10200118All Organisms → cellular organisms → Bacteria → Proteobacteria1508Open in IMG/M
3300010359|Ga0126376_11960798Not Available627Open in IMG/M
3300010359|Ga0126376_12108785Not Available607Open in IMG/M
3300010360|Ga0126372_11173843Not Available791Open in IMG/M
3300010361|Ga0126378_12394329Not Available603Open in IMG/M
3300010366|Ga0126379_10054218All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylopila → unclassified Methylopila → Methylopila sp. 73B3321Open in IMG/M
3300010366|Ga0126379_12216004All Organisms → cellular organisms → Bacteria → Proteobacteria650Open in IMG/M
3300010376|Ga0126381_104426350Not Available543Open in IMG/M
3300010398|Ga0126383_10163065All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.2096Open in IMG/M
3300010398|Ga0126383_11743360Not Available711Open in IMG/M
3300010863|Ga0124850_1013094Not Available2637Open in IMG/M
3300011271|Ga0137393_10002482All Organisms → cellular organisms → Bacteria11974Open in IMG/M
3300012189|Ga0137388_10256348Not Available1594Open in IMG/M
3300012189|Ga0137388_11410319Not Available635Open in IMG/M
3300012202|Ga0137363_10184027All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1665Open in IMG/M
3300012205|Ga0137362_11154830All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria658Open in IMG/M
3300012205|Ga0137362_11557928Not Available548Open in IMG/M
3300012205|Ga0137362_11758486Not Available507Open in IMG/M
3300012923|Ga0137359_10486123Not Available1090Open in IMG/M
3300012923|Ga0137359_11425278All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium581Open in IMG/M
3300012989|Ga0164305_11604028Not Available581Open in IMG/M
3300016294|Ga0182041_10148127All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1807Open in IMG/M
3300016294|Ga0182041_11216161All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria687Open in IMG/M
3300016294|Ga0182041_11284331Not Available669Open in IMG/M
3300016319|Ga0182033_10341489Not Available1249Open in IMG/M
3300016341|Ga0182035_11068747Not Available717Open in IMG/M
3300016371|Ga0182034_10324556Not Available1242Open in IMG/M
3300016422|Ga0182039_11096906Not Available716Open in IMG/M
3300016445|Ga0182038_11997362All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300018431|Ga0066655_11159393Not Available545Open in IMG/M
3300021170|Ga0210400_11515412All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300021406|Ga0210386_11020541Not Available705Open in IMG/M
3300025922|Ga0207646_10786030Not Available848Open in IMG/M
3300025928|Ga0207700_11789476Not Available540Open in IMG/M
3300026528|Ga0209378_1239720Not Available576Open in IMG/M
3300027071|Ga0209214_1018304Not Available888Open in IMG/M
3300027646|Ga0209466_1054906Not Available804Open in IMG/M
3300027646|Ga0209466_1125655Not Available521Open in IMG/M
3300031544|Ga0318534_10192753All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1177Open in IMG/M
3300031564|Ga0318573_10032798All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2440Open in IMG/M
3300031573|Ga0310915_10132503All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1711Open in IMG/M
3300031573|Ga0310915_10320023Not Available1098Open in IMG/M
3300031573|Ga0310915_10931395All Organisms → cellular organisms → Bacteria608Open in IMG/M
3300031679|Ga0318561_10478046Not Available686Open in IMG/M
3300031680|Ga0318574_10758961Not Available568Open in IMG/M
3300031719|Ga0306917_10146756Not Available1746Open in IMG/M
3300031719|Ga0306917_11137684Not Available607Open in IMG/M
3300031724|Ga0318500_10269935All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria828Open in IMG/M
3300031736|Ga0318501_10453740Not Available696Open in IMG/M
3300031770|Ga0318521_10482841Not Available743Open in IMG/M
3300031794|Ga0318503_10030041All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1588Open in IMG/M
3300031796|Ga0318576_10169852All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1021Open in IMG/M
3300031798|Ga0318523_10368683Not Available714Open in IMG/M
3300031835|Ga0318517_10063681Not Available1570Open in IMG/M
3300031897|Ga0318520_10331204Not Available921Open in IMG/M
3300031897|Ga0318520_10877303Not Available564Open in IMG/M
3300031910|Ga0306923_10265287All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1964Open in IMG/M
3300031912|Ga0306921_10217528All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2239Open in IMG/M
3300031912|Ga0306921_12527133Not Available532Open in IMG/M
3300031942|Ga0310916_10037511All Organisms → cellular organisms → Bacteria → Proteobacteria3619Open in IMG/M
3300031942|Ga0310916_11011059Not Available693Open in IMG/M
3300031947|Ga0310909_10141436All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1971Open in IMG/M
3300031954|Ga0306926_10260244All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2149Open in IMG/M
3300031954|Ga0306926_12697783All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria539Open in IMG/M
3300032001|Ga0306922_10258574Not Available1871Open in IMG/M
3300032035|Ga0310911_10217264Not Available1090Open in IMG/M
3300032039|Ga0318559_10501740Not Available566Open in IMG/M
3300032042|Ga0318545_10356127Not Available527Open in IMG/M
3300032042|Ga0318545_10373070Not Available514Open in IMG/M
3300032044|Ga0318558_10241979Not Available886Open in IMG/M
3300032044|Ga0318558_10278854Not Available825Open in IMG/M
3300032059|Ga0318533_10335214Not Available1100Open in IMG/M
3300032063|Ga0318504_10491605All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium587Open in IMG/M
3300032068|Ga0318553_10148932All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1211Open in IMG/M
3300032205|Ga0307472_101979734All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300032261|Ga0306920_100351139All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2194Open in IMG/M
3300032261|Ga0306920_103593473Not Available571Open in IMG/M
3300033289|Ga0310914_11824498Not Available512Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil28.97%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil18.69%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil17.76%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil10.28%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil6.54%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.67%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.87%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.93%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.93%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.93%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.93%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil0.93%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006606Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010863Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)EnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026528Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)EnvironmentalOpen in IMG/M
3300027071Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027646Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031794Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032042Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12630J15595_1002627213300001545Forest SoilMAPKSDKSFAKATTKLGLATVIAALWMTAVPITGAVADVQISAARAQAIQQ
JGI12630J15595_1005093423300001545Forest SoilMAPKSNKSFAKATTKLGLATAIAALWMTAVPITGAVADVQISAARAQAIQQCNRLAARYPLHDW
JGIcombinedJ26739_10172500823300002245Forest SoilMAPKSDKSFAKATTKLGLATVIAALWMTAVPITGAVADVQISAARA
Ga0066678_1110227223300005181SoilMAPKSNKSFAKATTKLGLATVIAALWMTAVPITGAVADVQ
Ga0008090_1580872423300005363Tropical Rainforest SoilMAPKSEKSFAKATTKLGLATAIAALWLTAVPITGAVAEVQISAARAQALQQCNRLAAR
Ga0070703_1045302513300005406Corn, Switchgrass And Miscanthus RhizosphereMAPKSNKSFAKATTKLGLATVIAALWMTAVPITGAVADVQISAARA
Ga0070705_10193640013300005440Corn, Switchgrass And Miscanthus RhizosphereMAPKSNKSFAKATTKLGLATVIAALWMTAVPITGAVADVQISAARAQAI
Ga0070706_10193616423300005467Corn, Switchgrass And Miscanthus RhizosphereMAPKSNKSFAKATTKFGLATVIAALWMTAVPITGAVADVQISAARAQAIQQCNRLAARYP
Ga0066905_10205854723300005713Tropical Forest SoilMAPKPNKSFAKATTKLGLATAIAALWLTAIPITGAVADVQISGARAT
Ga0066903_10197245343300005764Tropical Forest SoilMAPKPNKSFAKATTKLGLATAIAALWLTAIPITGAVADV
Ga0066903_10245217913300005764Tropical Forest SoilMAPKSNKSFAKATTKFGLATVIAALWMTAVPITGAVADV
Ga0066903_10718488613300005764Tropical Forest SoilMAPKSDKLFAKTTTKLGLATTIAALWLTVVPITGAVANEQISAA
Ga0081455_1004892453300005937Tabebuia Heterophylla RhizosphereMAPKPNKSFAKATTKLGLATAMAALWLTAVPITGAVADVQISAPRAAA
Ga0074062_1204750823300006606SoilMAPKSEKSFAKATTKLGLATAIAALWMTAVPITGAVADVQISAARAQAIQQCNRLAARYPLHDW
Ga0075424_10110766923300006904Populus RhizosphereMAQKQNKSFAKATTKFGLATAIAALWMTAVPMTDAVADVQISAARAQAIQQCNRLAARYPLHDW
Ga0099794_1077044113300007265Vadose Zone SoilMVAKLFAKATTKLGLATTIAALWLTVVPITGAVANEQISAARAAALQECNRLAQR
Ga0075423_1241206113300009162Populus RhizosphereMAPKSEKSFAKATTKLGLATAIAALWLTAVPITGAVA
Ga0126380_1224529613300010043Tropical Forest SoilMAPKPDKSFAKAATKLGLATAIAALWLSAVPITGAVADVQISAARA
Ga0126384_1074764213300010046Tropical Forest SoilMAPKPNKSFAKATTKLGLATAIAAVWLTAVPTGAVADVQISAARAVALQQCNR
Ga0126384_1089822613300010046Tropical Forest SoilMAPKSEKSFAKATTKLGLATAIAAFWLTAVPITGAVADVQISAARAQALQQCNRLAARFPLHDWGNT*
Ga0126384_1190969623300010046Tropical Forest SoilMAPKSDKSFAKATTKLGLATTIAALWLTAVPITGAVANEQISAARAA
Ga0126382_1046955813300010047Tropical Forest SoilMAPKPGKLFAKATTKFGLATAIAALWLTAVPITGAVANEQISAARAAAIHQ
Ga0126373_1030788713300010048Tropical Forest SoilMAPKSDKSFAKATTKLGLATTIAALWLTAVPITGAVA
Ga0126373_1083275833300010048Tropical Forest SoilAPKSDKSFAKATTKLGLATTIAALWLTAVPITGAVADVQISTARAAARTARLDHF*
Ga0126373_1274890413300010048Tropical Forest SoilMAPKSEKSFAKATTKLGLATAIAALWLTAVPITGAVAEV
Ga0126370_1020011833300010358Tropical Forest SoilMAPKSEKTFAKATTKLGLATTIAALLFTAAPMTDAVADVQISTARAAAIQQCNRLAAR
Ga0126376_1196079813300010359Tropical Forest SoilMAPKSNKSFAKATTKFGLATVIAALWMTAVPITGAVADVQISAARAQALQQCNRLAARFPTNDWG
Ga0126376_1210878513300010359Tropical Forest SoilMAPKSDKSFAKATTKLGLATTIAALWLTAAVPITGAVANEQISAARA
Ga0126372_1117384323300010360Tropical Forest SoilMAPKPDKSFAKAATKPGLATAIAALWLSAIPITGAVADVQ
Ga0126378_1158403813300010361Tropical Forest SoilMVAKLFARAKTKLGLATTIAALLLTVAPITGAVANEQISAARAAALQECNRLAQRYP
Ga0126378_1239432913300010361Tropical Forest SoilMAPKSDKSFAKATTKLGLATTIAALWLTAVPITGAVANEQISAARAAAIHECNLLAARYPLHDWG
Ga0126379_1005421873300010366Tropical Forest SoilMAPKSDKSFAKATTKLGLATTIAALWLTAVPITGAVANEQISAARAAAIHECNLLAARYPLH
Ga0126379_1221600423300010366Tropical Forest SoilMAPKPNKSFAKATTKLGLATAIAALWLTAVPISGAVADVQISTARAAALQECNRLAQRYPQH
Ga0126381_10371830713300010376Tropical Forest SoilMVAKLFAKATTKLGPATIIAALWLTVVPITGAVANEQISAARAAALQECNRLAQR
Ga0126381_10442635023300010376Tropical Forest SoilMAPKSNKSFAKATTKLGLATAIAALWLTAVPITGAVADVQ
Ga0126383_1016306543300010398Tropical Forest SoilMAPKSDKSFAKATTKLGLATTIAALWLTAAPITGAVADVQISTARAAALQECNRLAQRYPQHEWGN
Ga0126383_1174336013300010398Tropical Forest SoilMAPKSDKSFAKATTKLGLATTIAALWLTAVPITGAVANEQISAARAAAIHECNLLAARYPLHD
Ga0124850_101309463300010863Tropical Forest SoilMAPKSDKSFAKATTKLGLATTIAALWLTAVPITGAVAN
Ga0137393_10002482123300011271Vadose Zone SoilMAPKSDKSFAKATTKLGLATVIAALWMTAVPITGAVADVQISAA
Ga0137388_1025634813300012189Vadose Zone SoilMAPKSNKSFAKATAKFGLATVIAALWMTAVPITGAVADVQISAARAQA
Ga0137388_1141031913300012189Vadose Zone SoilMAPKSDKSFAKATTKLGLATVIAALWMTAVPITGAVADVQISAARAQ
Ga0137363_1018402713300012202Vadose Zone SoilMAPKSNKLFAKATTKFGLATVIAALWMTAVPITGAVADVQISAARAQAIQQCNRL
Ga0137362_1115483013300012205Vadose Zone SoilMVAKLFAKATTKLGLATTIAALWLTVVPITGAVANEQISAARAAAIHEC
Ga0137362_1155792813300012205Vadose Zone SoilMAPKSNKSFAKATTKLGLATVIAALWMTAVPITGAVADVQISAARAQAIQQCNRLAARYPLH
Ga0137362_1175848613300012205Vadose Zone SoilMAPKSDKSFAKATTKLGLATVIAALWMTAVPITGAVADVQISAARAQA
Ga0137359_1048612313300012923Vadose Zone SoilMAPKSNKSFAKATAKFGLATVIAALWMTAVPITGAVADVQISAARAQAIQQCNRLA
Ga0137359_1142527823300012923Vadose Zone SoilMAPKPDKLFAKAPTKLGLATAVAALLLTAIPITGAVADVQISAARAQAIQQCNRLAA
Ga0137407_1147672423300012930Vadose Zone SoilMVAKLFAKATTKLGLATTIAALWLTVVPITGAVANEQISATRAAALQECNRLAQRYPL
Ga0164305_1160402823300012989SoilMAPKPNKSFAKATTKLGLATAIATLWLTAVPTGAVADVQISA
Ga0182041_1014812713300016294SoilMAPKPNKSFAKATTKLGLATTIAALWMTAVPITGAVADVQISAARAAALQQCNRLAARFP
Ga0182041_1121616113300016294SoilMAPKSEKSFAKATTKLGLATAIAAFWLTAVPITGAVADVQISAARAQALQQCNRLAARFP
Ga0182041_1128433113300016294SoilMAPKSEKSFAKATTKLGLATTIAALLFTAAPMTDAVADVQIS
Ga0182033_1034148913300016319SoilMAPKSNKSFAKATTKFGLATVIAALWMTAVPITGAVADVQISPARAQALQQCNRLASRFP
Ga0182033_1070732633300016319SoilMSPKPEGHKVARLFAKATTKLGLATTIAALWLTAVPITSAVAQGALGQISAARAAGLQECNRLAQRYPLH
Ga0182035_1106874713300016341SoilMAPKSDKSFAKATTKLGLATTIAALWLTAAVPITGAVANEQISAARAAAIHECNLLAARYPLHDWG
Ga0182034_1032455633300016371SoilMAPKSNKSFAKATTKFGLATVIAALWMTAVPITGAVADVQISAARAQAIQQCNRLAA
Ga0182039_1109690613300016422SoilMAPKSNKSFAKATTKFGLATVIAALWMTAVPITGAVADVQISPARAQAIQQCNRLAARYPLH
Ga0182038_1199736213300016445SoilMAPKPNKSFAKATTKLGLATTIAALWMTAVPITGAVADVQISAARAAALQQCNRLAAR
Ga0066655_1115939323300018431Grasslands SoilMAPKANKSFAKATTKLGLATVIAALWMTAVPITGAVADVQISAARAQALQ
Ga0210400_1151541223300021170SoilMAPKSEKSFAKATTKLGLATAIAALWLTAVPITGAVAEVQISAARAQALQQCNRLA
Ga0210386_1102054113300021406SoilMAPKSEKSFAKATTKLGLATAIAALWLTAVPITGAVAEVQISAARAQAL
Ga0207646_1078603033300025922Corn, Switchgrass And Miscanthus RhizosphereMAPKSNKSFAKATTKLGLATAIAALWMTAIPITGAVADVQISAARAQALQQCNRLAQRYPIHE
Ga0207700_1178947613300025928Corn, Switchgrass And Miscanthus RhizosphereMAPKSNKSFAKATTKLGLATVIAALWMTAVPITGAVADVQISAARAQAIQQCNRLA
Ga0209378_123972013300026528SoilMAPKSNKSFAKATTKLGLATVIAALWMTAVPITGAVADVQISAARAQALQQCNRLAQRY
Ga0209214_101830413300027071Forest SoilMAQKQNKSFAKATTKFGLATAIAALWLIVVPIAGAAADVQISAAR
Ga0209466_105490613300027646Tropical Forest SoilMAPKPGKLFAKATTKFGLATAVAALWLTAVPITGAVANEQISAARAAAIHQCNLLASRYPLHDWGNT
Ga0209466_112565513300027646Tropical Forest SoilMAPKPNKSFAKATTKLGLATAIAALWLTAIPITGAVADVQISGARATAIQQCNRLASRYPLH
Ga0318534_1019275313300031544SoilMAPKSDKLFAKATTKLGLATTIAALWLTVVPITGAVANEQISAA
Ga0318573_1003279813300031564SoilMAPKPGKLFAKATTKFGLATAVAALWLTAVPITGAVANEQISAARAVA
Ga0310915_1013250353300031573SoilMAPKPNKSFAKATTKLGLATTIAALWMTAVPITGAVADVQISAARA
Ga0310915_1032002333300031573SoilMAPKSEKSFAKAATKLGLATTIAALWLTSVPISNAAADVQISAARAQAIQQCN
Ga0310915_1093139523300031573SoilMAPKSEKSFAKATTKLGLATAIAALWLTAVPITGAVAEVQISAARAQALQQCNRLAARF
Ga0318561_1047804613300031679SoilMAPKSDKSFAKATTKLGLATTIAALWLTAAVPITGAVANEQISAARAAAIHECNLLAARY
Ga0318574_1075896113300031680SoilMAPKSDKSFAKATTKLGLATTIAALWLTAAVPITGAVANEQISAARAAAIHECNLLAARYPLHDWGN
Ga0306917_1014675613300031719SoilMAPKPDKSFAKAATKLGLATTIAALWLTAIPITGAVADVQISAARAAAL
Ga0306917_1113768413300031719SoilMAPKSNKSFAKATTKFGLATVIAALWMTAVPITGAVADVQI
Ga0318500_1026993513300031724SoilMAPKSDKLFAKATTKLGLATTIAALWLTVVPITGAVANEQISAARAAAIHECNLLAS
Ga0318501_1045374023300031736SoilMAPKPDKSFAKAATKLGLATTIAALWLTAIPITGAVAD
Ga0318521_1048284113300031770SoilMAPKSDKLFAKATTKLGLATTIAALWLTVVPITGAVAN
Ga0318503_1003004113300031794SoilMAPKSERSFAKATTKLGLATTIAALLFTAAPMTDAVADVQISAA
Ga0318576_1016985213300031796SoilMAPKPGKLFAKATTKFGLATAVAALWLTAVPITGAVANEQISAARA
Ga0318523_1036868313300031798SoilMAPKSNKSFAKATTKLGLATAIAALWLTAVPITGAVADVQVSAARAA
Ga0318517_1006368113300031835SoilMAPKPGKLFAKATTKFGLATAIAALWLTAVPITGAVANEQ
Ga0318520_1033120413300031897SoilMAPKSDKSFAKATTKLGLATTIAALWLTAAVPITGAVANEQISAARAAAIHECNL
Ga0318520_1087730313300031897SoilMAPKPDKSFAKAATKLGLATTIAALWLTAIPITGAVADVQISAARAAALQQ
Ga0306923_1026528713300031910SoilMAPKSNKSFAKATTKVGLATAIAALWMTAIPITGAVADVQISAARAQALQQCNRLAQR
Ga0306921_1021752813300031912SoilMAPKPNKSFAKATTKLGLATTIAALWMTAVPITGAVADVQISAARAAALQQCNRLAARFPLHDWGN
Ga0306921_1252713313300031912SoilMAPKSNKSFAKATTKLGLATVIAALLFATAPITGAVADVQISAARAQ
Ga0310916_1003751153300031942SoilMAPKSEKSFAKATTKLGLATTIAALLFTAAPMTDAVAD
Ga0310916_1101105923300031942SoilMAPKSNKSFAKATTKFGLATVIAALWMTAVPITGAVADVQISPARAQA
Ga0310909_1014143663300031947SoilMAPKPNKSFAKATTKLGLATTIAALWMTAVPITGAVADVQISAARAAALQQCNRLAARFPLHDCG
Ga0306926_1026024443300031954SoilMAPKSERSFAKATTKLGLATTIAALLFTAAPMTDAVADVQISAARAAAI
Ga0306926_1269778313300031954SoilMAPKSDKLFAKATTKLGLATTIAALWLTVVPITGAVANEQISAGRAAAI
Ga0306922_1025857453300032001SoilMAPKPGKLFAKATTKFGLATAVAALWLTAVPITGAVANEQISAARAAAIHQCNLLASRYPLHD
Ga0310911_1021726423300032035SoilMAPKSDKSFAKATTKLGLATTIAALWLTAAVPITGAVANEQISAARAAAIH
Ga0318559_1050174013300032039SoilMAPKSNKSFAKATTKLGLATVIAALWMTAVSITGAVADVQISPARAQAIQQ
Ga0318545_1035612713300032042SoilMAPKPNKSFAKATTKLGLATAIAALLFTAAPITGAVADVQISSAR
Ga0318545_1037307013300032042SoilMAPKPDKSFAKAATKLGLATAIAALWLSAVPIAGA
Ga0318558_1024197933300032044SoilMAPKSEKSFAKATTKLGLATTIAALLFTAAPMTDAVADVQISAARAAAIQQCN
Ga0318558_1027885413300032044SoilMAPKSDKSFAKATTKLGLATTIAALWLTAAVPITGAVANEQISAARAAAIHECNLLAARYPLHD
Ga0318533_1033521413300032059SoilMAPKPNKSFAKATTKLGLATAIAALLFTAAPITGAVADVQI
Ga0318504_1049160523300032063SoilMAPKPGKLFAKATTKFGLATAVAALWLTAVPITGAVANE
Ga0318553_1014893223300032068SoilMAPKSDKLFAKATTKLGLATTIAALWLTVVPITGAVANEQISAARAAAIHECN
Ga0307472_10197973413300032205Hardwood Forest SoilMAPKSDKSFAKATTKLGPAPAIAALWFTAVPLAGAVADVQISPARA
Ga0306920_10035113913300032261SoilMAPKSNKSFAKATTKFGLATVIAALWMTAVPITGAVADVQISPARA
Ga0306920_10359347313300032261SoilMAPKPNKSFAKATTKLGLTTTIAALLFTAVPLASAVADVQISAARAAALQQCNRLAAR
Ga0310914_1182449813300033289SoilMAPKSEKSFAKATTKLGLATAIAALWLTAVPITGAVAEVQISAARAQALQQCNRLAVRFPTND


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.