Metagenome / Metatranscriptome Family F091946

Basic Information
Family ID	F091946
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	43 residues
Representative Sequence	MTSTPARSGMPGHFGIRITDADKDKLVGELDVDDRHLNNSGHVHG
Number of Associated Samples	96
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	13.21 %
% of genes near scaffold ends (potentially truncated)	94.39 %
% of genes from short scaffolds (< 2000 bps)	95.33 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Most Common Taxonomy
Group	Bacteria (71.963 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.579 % of family members)
Environment Ontology (ENVO)	Unclassified (34.579 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.206 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 23.29% Coil/Unstructured: 76.71%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF02515	CoA_transf_3	10.28
PF13302	Acetyltransf_3	6.54
PF01977	UbiD	4.67
PF00293	NUDIX	3.74
PF07369	DUF1488	2.80
PF07978	NIPSNAP	2.80
PF00296	Bac_luciferase	2.80
PF01545	Cation_efflux	2.80
PF12973	Cupin_7	1.87
PF00300	His_Phos_1	1.87
PF02518	HATPase_c	1.87
PF04828	GFA	1.87
PF13419	HAD_2	0.93
PF03773	ArsP_1	0.93
PF13231	PMT_2	0.93
PF07690	MFS_1	0.93
PF02896	PEP-utilizers_C	0.93
PF13358	DDE_3	0.93
PF08002	DUF1697	0.93
PF02796	HTH_7	0.93
PF00239	Resolvase	0.93
PF03435	Sacchrp_dh_NADP	0.93
PF01323	DSBA	0.93
PF02586	SRAP	0.93
PF00043	GST_C	0.93
PF04226	Transgly_assoc	0.93
PF02441	Flavoprotein	0.93
PF05239	PRC	0.93
PF00106	adh_short	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	10.28
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	4.67
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	2.80
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	2.80
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	2.80
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	2.80
COG3791	Uncharacterized conserved protein	Function unknown [S]	1.87
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	0.93
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG0701	Uncharacterized membrane protein YraQ, UPF0718 family	Function unknown [S]	0.93
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.93
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.93
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.93
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.93
COG3797	Uncharacterized conserved protein, DUF1697 family	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.96 %
Unclassified	root	N/A	28.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.96 %
Unclassified	root	N/A	28.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.96 %
Unclassified	root	N/A	28.04 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	58.88 %
Unclassified	root	N/A	28.04 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.74 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	55.14 %
Unclassified	root	N/A	28.04 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.04 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	20.56 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	13.08 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.67 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	3.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.56 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	7.48 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	3.74 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.87 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	0.93 %
Zavarziniaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Zavarziniaceae	0.93 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.56 %
unclassified Ktedonobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → unclassified Ktedonobacterales	2.80 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	1.87 %
Chelativorans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans	0.93 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	0.93 %
Belnapia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia	0.93 %
Zavarzinia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Zavarziniaceae → Zavarzinia	0.93 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.56 %
Ktedonobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → unclassified Ktedonobacterales → Ktedonobacterales bacterium	2.80 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1.87 %
unclassified Reyranella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella	0.93 %
unclassified Chelativorans	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans	0.93 %
Belnapia arida	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → Belnapia arida	0.93 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.93 %
Zavarzinia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Zavarziniaceae → Zavarzinia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.56 %
Ktedonobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → unclassified Ktedonobacterales → Ktedonobacterales bacterium	2.80 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1.87 %
Reyranella sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	0.93 %
Chelativorans sp. J32	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp. J32	0.93 %
Belnapia arida	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → Belnapia arida	0.93 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.93 %
Zavarzinia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Zavarziniaceae → Zavarzinia	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2035918004\|FACENC_F56XM5W01BUOZA	Not Available	524	Open in IMG/M
3300003223\|JGI26343J46809_1006503	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300004082\|Ga0062384_101286957	Not Available	535	Open in IMG/M
3300004092\|Ga0062389_101740271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp. J32	804	Open in IMG/M
3300005332\|Ga0066388_100920840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1449	Open in IMG/M
3300005439\|Ga0070711_100958225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	733	Open in IMG/M
3300005536\|Ga0070697_101808717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	547	Open in IMG/M
3300005569\|Ga0066705_10405872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	853	Open in IMG/M
3300005576\|Ga0066708_10725004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	628	Open in IMG/M
3300005602\|Ga0070762_10771289	All Organisms → cellular organisms → Bacteria → Proteobacteria	649	Open in IMG/M
3300006028\|Ga0070717_11377721	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300006638\|Ga0075522_10383462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	667	Open in IMG/M
3300006800\|Ga0066660_10612217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	909	Open in IMG/M
3300009143\|Ga0099792_10605670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	699	Open in IMG/M
3300009162\|Ga0075423_11813949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	658	Open in IMG/M
3300010048\|Ga0126373_10807612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1000	Open in IMG/M
3300010361\|Ga0126378_10504983	All Organisms → cellular organisms → Bacteria	1324	Open in IMG/M
3300010366\|Ga0126379_13061129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	560	Open in IMG/M
3300010376\|Ga0126381_100474552	All Organisms → cellular organisms → Bacteria	1759	Open in IMG/M
3300011269\|Ga0137392_10828538	Not Available	763	Open in IMG/M
3300011271\|Ga0137393_11710756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M
3300012207\|Ga0137381_11432039	Not Available	583	Open in IMG/M
3300012361\|Ga0137360_11119203	Not Available	680	Open in IMG/M
3300012917\|Ga0137395_10680049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	744	Open in IMG/M
3300012927\|Ga0137416_11540977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	604	Open in IMG/M
3300012971\|Ga0126369_10178764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2025	Open in IMG/M
3300012985\|Ga0164308_10638879	Not Available	910	Open in IMG/M
3300016270\|Ga0182036_11356302	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300016294\|Ga0182041_10620065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	952	Open in IMG/M
3300016357\|Ga0182032_10946454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	734	Open in IMG/M
3300016371\|Ga0182034_11191589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	662	Open in IMG/M
3300016387\|Ga0182040_10873652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	744	Open in IMG/M
3300016404\|Ga0182037_11200480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300020579\|Ga0210407_11106384	Not Available	600	Open in IMG/M
3300020580\|Ga0210403_10119750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2142	Open in IMG/M
3300020580\|Ga0210403_10857620	All Organisms → cellular organisms → Bacteria → Proteobacteria	719	Open in IMG/M
3300020581\|Ga0210399_10548769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → unclassified Ktedonobacterales → Ktedonobacterales bacterium	958	Open in IMG/M
3300020581\|Ga0210399_11023051	Not Available	664	Open in IMG/M
3300020583\|Ga0210401_11153067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → Belnapia arida	634	Open in IMG/M
3300021170\|Ga0210400_10988465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	684	Open in IMG/M
3300021384\|Ga0213876_10509184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	641	Open in IMG/M
3300021388\|Ga0213875_10591396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Zavarziniaceae → Zavarzinia	536	Open in IMG/M
3300021401\|Ga0210393_10430150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1077	Open in IMG/M
3300021405\|Ga0210387_11817021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300021406\|Ga0210386_10872645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	771	Open in IMG/M
3300021420\|Ga0210394_11122224	Not Available	677	Open in IMG/M
3300021559\|Ga0210409_10331475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → unclassified Ktedonobacterales → Ktedonobacterales bacterium	1369	Open in IMG/M
3300021560\|Ga0126371_11564881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	786	Open in IMG/M
3300021560\|Ga0126371_11580962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	782	Open in IMG/M
3300021560\|Ga0126371_11682394	Not Available	759	Open in IMG/M
3300022512\|Ga0242676_1035650	Not Available	577	Open in IMG/M
3300022715\|Ga0242678_1034247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	681	Open in IMG/M
3300025915\|Ga0207693_10881360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	687	Open in IMG/M
3300025915\|Ga0207693_11216704	Not Available	567	Open in IMG/M
3300025929\|Ga0207664_10973553	Not Available	761	Open in IMG/M
3300026319\|Ga0209647_1265926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	574	Open in IMG/M
3300027069\|Ga0208859_1020641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	749	Open in IMG/M
3300027381\|Ga0208983_1104657	Not Available	521	Open in IMG/M
3300027603\|Ga0209331_1023417	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300027667\|Ga0209009_1039501	Not Available	1172	Open in IMG/M
3300027889\|Ga0209380_10005559	Not Available	7644	Open in IMG/M
3300027889\|Ga0209380_10006380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7095	Open in IMG/M
3300027903\|Ga0209488_10409437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1003	Open in IMG/M
3300028047\|Ga0209526_10357962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	976	Open in IMG/M
3300028536\|Ga0137415_10943704	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300029910\|Ga0311369_10642453	Not Available	879	Open in IMG/M
3300031057\|Ga0170834_111211822	Not Available	1008	Open in IMG/M
3300031231\|Ga0170824_119880684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	977	Open in IMG/M
3300031446\|Ga0170820_11690491	Not Available	550	Open in IMG/M
3300031474\|Ga0170818_109895799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1850	Open in IMG/M
3300031543\|Ga0318516_10527600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	677	Open in IMG/M
3300031546\|Ga0318538_10158881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1197	Open in IMG/M
3300031572\|Ga0318515_10224947	Not Available	1006	Open in IMG/M
3300031573\|Ga0310915_10256656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1230	Open in IMG/M
3300031668\|Ga0318542_10463905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	657	Open in IMG/M
3300031708\|Ga0310686_100941312	All Organisms → cellular organisms → Bacteria → Proteobacteria	591	Open in IMG/M
3300031713\|Ga0318496_10256241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	965	Open in IMG/M
3300031736\|Ga0318501_10536900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	639	Open in IMG/M
3300031744\|Ga0306918_10418238	Not Available	1045	Open in IMG/M
3300031748\|Ga0318492_10097883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1439	Open in IMG/M
3300031753\|Ga0307477_10282512	Not Available	1147	Open in IMG/M
3300031764\|Ga0318535_10530913	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300031770\|Ga0318521_10198055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1159	Open in IMG/M
3300031780\|Ga0318508_1242891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M
3300031796\|Ga0318576_10428915	Not Available	625	Open in IMG/M
3300031845\|Ga0318511_10147157	Not Available	1028	Open in IMG/M
3300031845\|Ga0318511_10269437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	766	Open in IMG/M
3300031879\|Ga0306919_11279442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	556	Open in IMG/M
3300031945\|Ga0310913_10782885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	673	Open in IMG/M
3300031954\|Ga0306926_10722823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1206	Open in IMG/M
3300031962\|Ga0307479_10340928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → unclassified Ktedonobacterales → Ktedonobacterales bacterium	1482	Open in IMG/M
3300031981\|Ga0318531_10472777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	568	Open in IMG/M
3300032001\|Ga0306922_12094203	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300032001\|Ga0306922_12094724	Not Available	548	Open in IMG/M
3300032041\|Ga0318549_10086973	All Organisms → cellular organisms → Bacteria → Proteobacteria	1347	Open in IMG/M
3300032055\|Ga0318575_10620865	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300032059\|Ga0318533_10599101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	809	Open in IMG/M
3300032059\|Ga0318533_11085986	Not Available	586	Open in IMG/M
3300032065\|Ga0318513_10488569	Not Available	602	Open in IMG/M
3300032068\|Ga0318553_10778504	Not Available	501	Open in IMG/M
3300032076\|Ga0306924_11223601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	811	Open in IMG/M
3300032076\|Ga0306924_11355115	Not Available	761	Open in IMG/M
3300032090\|Ga0318518_10399329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	705	Open in IMG/M
3300032174\|Ga0307470_10824882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	721	Open in IMG/M
3300032205\|Ga0307472_102766594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300032261\|Ga0306920_101079372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1165	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.20%
Host-Associated	Host-Associated	2.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.39%
Aquatic	Environmental → Aquatic	2.80%
Plants	Host-Associated → Plants	2.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.46%
Freshwater	Environmental → Aquatic → Freshwater	2.80%
Roots	Host-Associated → Plants → Roots	1.87%
Peat	Environmental → Terrestrial → Peat	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.44%
Loam	Environmental → Terrestrial → Soil → Loam	14.02%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.80%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	55.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.80%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.87%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.74%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035918004	Soil microbial communities from sample at FACE Site 2 North Carolina CO2-	Environmental	Open in IMG/M
3300003223	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022512	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300027069	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002 (SPAdes)	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091946

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCA_1582870	2035918004	Soil	MTSTPARSGMPEHFGIRITDAAKDKLVGELDVDDRHLNNSG
JGI26343J46809_10065032	3300003223	Bog Forest Soil	MPGHFGIRITDADKDKLVGELDVDDRHLNNSGHVHGGALA
Ga0062384_1012869571	3300004082	Bog Forest Soil	MTSIPTRSGMPGHFGIRIAKADKDKLVGELDVDDRHLNNS
Ga0062389_1017402711	3300004092	Bog Forest Soil	MTLASARSGMPGHFGIRITQAEKDKLVGELDVDDRHLNNSGHVHGGAL
Ga0066388_1009208404	3300005332	Tropical Forest Soil	MTSILVRSGMPQHFGIRIIEADKDKLVGELDVDDRHLNNSGHVHG
Ga0070711_1009582251	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTSIPARSGMPEHFGIRITDADNDKLVGELDVDDRHLNNSGHVHGGALA
Ga0070697_1018087171	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTPIRSGMPGHFGIRITDADKDKLVGELDVDDRHLNNSGHVHGGALAA
Ga0066705_104058723	3300005569	Soil	MTSTPSRSGMPGHFGIRITDADKDKLVGELDVDDRHLNNSGHVHGGA
Ga0066705_107289142	3300005569	Soil	MTSDTPRSGMPGHLGIRITDATKDRLTGEMDADERHLNAGGVVHGGALAAF
Ga0066708_107250042	3300005576	Soil	MTSASARSGMPGHFGIRITSADKDKLVGELDVDDRHLNNS
Ga0070762_107712891	3300005602	Soil	MTSTPGPSGMPEHFGIRITSAEKDKLVGELDVDHRHLNRS
Ga0070717_113777211	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTPARSGMPGHFGIRIVEAAKDKLVGEMDADDRHLNNSGHV
Ga0075522_103834623	3300006638	Arctic Peat Soil	MTSAVPTAGMPEHFGIRVTSTGKDKLVGEIDTDHRHLN
Ga0066660_106122171	3300006800	Soil	MTATSHRPGMPEHFGIRVTSAEKDKLVGEFDVDDRHLNNGGHVHGGA
Ga0099792_106056702	3300009143	Vadose Zone Soil	MTSTPSRSGVPGHFGIRITDAAKDKLVGELDVDDRHLNNSGHVHGG
Ga0075423_118139492	3300009162	Populus Rhizosphere	MTSTSDRSGMPGYFGIRIVDADKDKLVGELDADDR
Ga0126373_108076121	3300010048	Tropical Forest Soil	MTSFAVRSGMPGHFGIRITEADKDRLVGELDVDDRHLNNS
Ga0126378_105049831	3300010361	Tropical Forest Soil	MPAHFGIRIADANKDKLVGELDVDERHLNNSDHVHGVSGIS
Ga0126379_130611292	3300010366	Tropical Forest Soil	MTSTPARSGMPGHFGIRITDANKDRLVGELDVDDRHLNNSGHVHGGALA
Ga0126381_1004745523	3300010376	Tropical Forest Soil	MTSSPARSGMPGHFGIRIADANKDKLVGELDVDDRQQ*
Ga0137392_108285381	3300011269	Vadose Zone Soil	TMISILPRSGMPEHFGIRITSADKDKLVGEIDVDHRHLNVL*
Ga0137393_117107561	3300011271	Vadose Zone Soil	MTSTPARSGMPGHFGIRITDADKDKLVGELDVDDRHLNNSGHVH
Ga0137381_114320392	3300012207	Vadose Zone Soil	MTSLLARSGMPEHFGIRITSAEQDKLVGEIDVDQRHLNRGGCWRS*
Ga0137360_111192031	3300012361	Vadose Zone Soil	MISILPRSGMPEHFGIRITSADKDKLVGEIDVDHRHLNVL*
Ga0137395_106800491	3300012917	Vadose Zone Soil	MPGHFGIRVVEAAKDRLVGEMDADDRHLNNSGHVHG
Ga0137416_115409771	3300012927	Vadose Zone Soil	MPGHFGIRITDANKDRLVGELDVNDRHLNNSGHVHGGALAAFGEPPRD
Ga0126369_101787643	3300012971	Tropical Forest Soil	MTSASARSGMPAHFGIRIADANKDKLVGELDVDDHQQ*
Ga0164308_106388791	3300012985	Soil	MSSNPRRPGMPGHFGIRITDAGKDRLVGELDVNDRHLNNSGHVH
Ga0182036_113563021	3300016270	Soil	MTSTPARSGMPGHFGIRITDADKDKLVGELDVDDRHLNNSGHVHG
Ga0182041_106200651	3300016294	Soil	MTSNTAHSGMSGHFGIRIPDANKDRLVGELDVDDRH
Ga0182032_109464541	3300016357	Soil	MTSTPARSGMPGHFGIRITNANKDKLVGELDVDDRHLNNGGHVHGGAL
Ga0182034_111915891	3300016371	Soil	MTSNTAHSGMSGHFGIRIPDANKDRLVGELDVDDRHLNNSGHVHGGALAAFAD
Ga0182040_108736521	3300016387	Soil	MTSNTAHYGMSGHFGIRITDANKDRLVGELDVDDRHLNNSSH
Ga0182037_112004802	3300016404	Soil	MTSNTAHSGMSGHFGIRIPDANKDRLVGELDVDDRHLNNSSHVHGGALAA
Ga0210407_111063841	3300020579	Soil	MTSTPAPSGMPEHFGIRITDSHRDKLVGELDVDDRHLNNSGHVHGG
Ga0210403_101197501	3300020580	Soil	MPGHFGIRITDADKDKLVGELDVDDRHLNNSGHVHGG
Ga0210403_108576201	3300020580	Soil	MTSTPARSGMPEHFGIRTTDAKKDKLVGELDVDDRHLNNSGHVHGGA
Ga0210399_105487691	3300020581	Soil	MTFTPAPSGMPGHFGIRITDADKDKLVGELDVDDRHLNNSGHVHGGALAAFA
Ga0210399_110230511	3300020581	Soil	VLVDDLDPTRSGMPERFGIRITDAQKDKLVGELDVDDRHLNNSGHVHGGALA
Ga0210401_111530672	3300020583	Soil	MTSTPARSGMPQHFGIRITDANKDRLVGELDVDDRHLNNSGHVH
Ga0210400_109884652	3300021170	Soil	MTSTPARSGMPEHFGIRITDADKDKLVGELDVDDRHLNN
Ga0213876_105091842	3300021384	Plant Roots	MSELSRPGMPGHFGIRIVSADKDKLTAEMEAGDRHVNNSGHVHGGALAAFA
Ga0213875_105913962	3300021388	Plant Roots	MTSTPDRLGMPGHFGIRITAADKHQLVGELDADDRHLNNS
Ga0210393_104301503	3300021401	Soil	MPGHFGIRITDADKDKLVGELDVDDRHLNNGGHVHGGALAAF
Ga0210387_118170211	3300021405	Soil	MPGHFGIRITDADKDKLVGELDVDDRHLNNSGHVHG
Ga0210386_108726451	3300021406	Soil	MTSTSDRSGMPGHFGIRITDADKDKLVGELDADDRHLNNSGHVHGGALAAFADD
Ga0210394_111222241	3300021420	Soil	MTSTPARSGMPEHFGIRITDAAKDKLVGELDVDDRHLNNSGHAHG
Ga0210409_103314753	3300021559	Soil	MPEHFGIRITDADKDKLVGELDVDDRHLNNSGHVHGGALAAFA
Ga0126371_115648811	3300021560	Tropical Forest Soil	MTSASARSGMPAHFGIRITNAERDKLVGELDVDDRHLNNSGHVHGGA
Ga0126371_115809622	3300021560	Tropical Forest Soil	MPGHFGIRIIDANKDKLVGELDVDDRHLNNSGHVHG
Ga0126371_116823942	3300021560	Tropical Forest Soil	MTSAPSRSGMPEYFGIRITQTDKDKLVGELDVDDRHLNNSGHVHGGALAAFA
Ga0242676_10356503	3300022512	Soil	MTSTPARSGMPGHFGIRITDADKDKLVGELDVDDR
Ga0242678_10342471	3300022715	Soil	MPQHFGIRITDANKDRLVGELGVDDRHLNNSGHVHGGA
Ga0207693_108813601	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MPGHFGIRVIEAAKDRLVGEMDADDRHLNNSGHVHG
Ga0207693_112167041	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTPAHSGMPEHFGIRITDADRDKLVGELDVDDRHLNNSGHVHGGALA
Ga0207664_109735532	3300025929	Agricultural Soil	MTSTPARSGMTGHFGIRVTDAAKDKLVGELDVDDRHLNNSGHV
Ga0209647_12659262	3300026319	Grasslands Soil	MTTAPARRGMPGHFGIRIVSAEKDKLVGELDVDERHLNNSG
Ga0208859_10206411	3300027069	Forest Soil	MTSTPARSGMPEHFGIRITDAAKDKLVGELDVDDRHLNNSGHVHGGALAAFADDL
Ga0208983_11046572	3300027381	Forest Soil	MTSTPARSGMPEHFGIRITDSHRDKLVGELDVDDRHLNNSGHVHG
Ga0209331_10234173	3300027603	Forest Soil	MTSTPTRSGMPGHFGIRITDAAKDKLVGELDVDDRHLNNSGHAHGGAL
Ga0209009_10395014	3300027667	Forest Soil	MAADSTRSGMPGHFGIRITDAGKEKLVGELDVDDRHLNNSGH
Ga0209380_100055591	3300027889	Soil	MTSTPARSGMPEHFGIRITDAAKDKLVGELDVDDRHLNNSGHVHGGALA
Ga0209380_100063801	3300027889	Soil	MTSTPARSGMPGHFGIRITDAAKDKLVGELDVDDRHLNNSGHVHGGALA
Ga0209488_104094371	3300027903	Vadose Zone Soil	MTETLPHTGMPEHFGIRITSLDKDKLVGELDVDHRHINNSGNVHGGALLAFADDLGG
Ga0209526_103579622	3300028047	Forest Soil	MTSIPARSGMPGHFGIRITDSHKDKLVGELDVDDRHLNNSG
Ga0137415_109437042	3300028536	Vadose Zone Soil	MTSTPPRSGMPGHFGIRVVEAAKDRLVGEMDADDRHLNN
Ga0311369_106424531	3300029910	Palsa	MTAPYTNPGMPEYFGIRITSAEKDKLVGELDADHRHVNRGGHVHGGTL
Ga0170834_1112118223	3300031057	Forest Soil	MTSNPARSGMPEHFGIRITDADKDKLVGELDVDDRHLNNSGHVPILQQM
Ga0170824_1198806842	3300031231	Forest Soil	MTSTPARSGMPGHFGIRITDADKDKLVGELDVDDRHLNN
Ga0170820_116904911	3300031446	Forest Soil	MTSTPAHSGMPEHFGIRITDADKDKLVGELDVDDRHLNNS
Ga0170818_1098957994	3300031474	Forest Soil	MTSTPARSGMPEHFGIRITDADKDKLVGELDVDDRHLNNSGHVHGGALA
Ga0318516_105276003	3300031543	Soil	MTSTAARSGMPGHFGIRVTEADKDKLVGELDVDDRHLNNSGRVHGGAMAAF
Ga0318538_101588812	3300031546	Soil	MTSTPARFGMPGHFGIRITDAGKDKLVGELDVDDRHLNN
Ga0318515_102249472	3300031572	Soil	MTSTAARSGMPGHFGIRVTEADKDKLVGELDVDDRHLNNSGHVHGGA
Ga0310915_102566561	3300031573	Soil	MTSTPARFGMPGHFGIRITDAGKDKLVGELDVDDRHLNNS
Ga0318542_104639051	3300031668	Soil	MTSTPARSGMPGHFGIRITDADKDKLVGELDVDDRHLNNSGHVHGGA
Ga0310686_1009413121	3300031708	Soil	MISDPARSGMPGHFGIRITDADKDKLVGELDADDRHVNNSGHVHGGALA
Ga0318496_102562411	3300031713	Soil	MPGYFGIRITDANKDKLVGELDADDRHLNNSGPVHGGALAAFADDLGGA
Ga0318501_105369001	3300031736	Soil	MPGHFGIRITDADKDKLVGELDVDDRHLNNSGHVHGGALAAF
Ga0306918_104182382	3300031744	Soil	MPGHFGIRVTEADKDKLVGELDVDDRHLNNSGRVHGG
Ga0318492_100978831	3300031748	Soil	MTSTRTRSGMPGHFGIRITDANKDKLVGELDVDDRHLNNGGHVHGG
Ga0307477_102825121	3300031753	Hardwood Forest Soil	MTSTPARSGMPEHFGIRITDANKDKLVGELDVDDRHLNNSGHVHGGALAAFA
Ga0318535_105309131	3300031764	Soil	MTSTAARSGMPGHFGIRVTEADKDKLVGELDVDDRHLNNSGHVH
Ga0318521_101980552	3300031770	Soil	MTSTPERSGMPGYFGIRITDANKDKLVGELDADDRHLNNSGPVH
Ga0318508_12428911	3300031780	Soil	MPGYFGIRITDANKDKLVGELDADDRHLNNSGHVHGGALAAFADDLG
Ga0318576_104289152	3300031796	Soil	MTSIPARSGMPVRFGIRITEADKDKLVGELDIDDRHLDNSDHVHGGALAAF
Ga0318511_101471571	3300031845	Soil	MTSTAARSGMPGHFGIRVTEADKDKLVGELDVDDRHLNNSGHVHGG
Ga0318511_102694371	3300031845	Soil	MTSTAARSGMPGHFGIRVTEADKDKLVGELDVDDRHLNNSGRVHGGA
Ga0306919_112794421	3300031879	Soil	MTSTPARSGMPGHFGIRITNANKDKLVGELDVDDRHLNNS
Ga0310913_107828851	3300031945	Soil	MTSTPARSGMPGHFGIRITDANKDKLVGELDVDDRHLNNSGHV
Ga0306926_107228231	3300031954	Soil	MTSTLARSGMPAHFGIRIADADKDKLVGELDVDDRHLNNSGHVHGGALAA
Ga0307479_103409281	3300031962	Hardwood Forest Soil	MPEHFGIRITDADKDKLVGELDVDDRHLNNSGHVHGGALA
Ga0318531_104727771	3300031981	Soil	MTSTPARSGMPGHFGIRITDANKDKLVGELDVDDRHLNNSGHVHGGA
Ga0306922_120942032	3300032001	Soil	MTSTAARSGMPGHFGIRVTEADKDKMVGELDVDDRHLNN
Ga0306922_120947242	3300032001	Soil	MTSTPARSGMPGHFGIRIAKADKDKLVGELDVDDR
Ga0318549_100869731	3300032041	Soil	MPVRFGIRITEADKDKLVGELDIDDRHLDNSDHVH
Ga0318575_106208652	3300032055	Soil	MPGHFGIRVTEADKDKLVGELDVDDRHLNNSGRVHG
Ga0318533_105991012	3300032059	Soil	MTSTPARSGMPGHFGIRITDANKDKLVGELDVDDRHLNNSGHVHG
Ga0318533_110859862	3300032059	Soil	MTSTSVRSGMPGHFGIRVTEADKDRLVGELDVDDRHLNNSGHVHGGA
Ga0318513_104885692	3300032065	Soil	MTFTAARSGMPGHFGIRVTEADKDKLVGELDVDDR
Ga0318553_107785042	3300032068	Soil	MTSIPARSGMPVRFGIRITEADKDKLVGELDIDDRHLD
Ga0306924_112236012	3300032076	Soil	MTSNTAHYGMSGHFGIRITDANKDRLVGELDVDDRHLNNSSHV
Ga0306924_113551152	3300032076	Soil	MTSTAARSGMPGHFGIRVTEAEKDKLVGELDVDDRHLNNSGRVHG
Ga0318518_103993292	3300032090	Soil	MTSTPARFGMPGHFGIRITDAGKDKLVGELDVDDRHLNNSGHVHG
Ga0307470_108248821	3300032174	Hardwood Forest Soil	MTSIPVRSGMPGHFGIRITDANKDRLVGELDVNDR
Ga0307472_1027665942	3300032205	Hardwood Forest Soil	MTSTPARSGMPGHFGIRITDAGKDRLVGELDVNDR
Ga0306920_1010793721	3300032261	Soil	MTSTPARSGMPGHFGIRITDANKDKLVGELDVDDRHLNNSGHVHGGALA

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign