NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F091855

Metagenome Family F091855

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F091855
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 54 residues
Representative Sequence MEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISDLKN
Number of Associated Samples 78
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 30.84 %
% of genes from short scaffolds (< 2000 bps) 71.96 %
Associated GOLD sequencing projects 64
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (68.224 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(26.168 % of family members)
Environment Ontology (ENVO) Unclassified
(78.505 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(98.131 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 74.07%    β-sheet: 0.00%    Coil/Unstructured: 25.93%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF13662Toprim_4 18.69
PF01555N6_N4_Mtase 18.69
PF12684DUF3799 3.74
PF08774VRR_NUC 3.74
PF00145DNA_methylase 2.80
PF13730HTH_36 1.87
PF06199Phage_tail_2 1.87
PF02195ParBc 0.93
PF08299Bac_DnaA_C 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG0863DNA modification methylaseReplication, recombination and repair [L] 18.69
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 18.69
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 18.69
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 2.80
COG0593Chromosomal replication initiation ATPase DnaAReplication, recombination and repair [L] 0.93


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A68.22 %
All OrganismsrootAll Organisms31.78 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573025|GS310G0146KB_1113212467893Not Available908Open in IMG/M
3300000101|DelMOSum2010_c10017090All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes4367Open in IMG/M
3300000928|OpTDRAFT_10191246Not Available845Open in IMG/M
3300001344|JGI20152J14361_10027557All Organisms → Viruses → Predicted Viral1923Open in IMG/M
3300001344|JGI20152J14361_10027784All Organisms → Viruses → Predicted Viral1910Open in IMG/M
3300001344|JGI20152J14361_10058019All Organisms → Viruses963Open in IMG/M
3300001348|JGI20154J14316_10192735Not Available505Open in IMG/M
3300001351|JGI20153J14318_10044524Not Available1699Open in IMG/M
3300001352|JGI20157J14317_10197894Not Available576Open in IMG/M
3300003580|JGI26260J51721_1040663All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage770Open in IMG/M
3300004457|Ga0066224_1325601Not Available916Open in IMG/M
3300006025|Ga0075474_10017189Not Available2667Open in IMG/M
3300006029|Ga0075466_1039839All Organisms → cellular organisms → Bacteria1427Open in IMG/M
3300006752|Ga0098048_1000330Not Available23959Open in IMG/M
3300006793|Ga0098055_1011127All Organisms → cellular organisms → Bacteria4030Open in IMG/M
3300006874|Ga0075475_10004036Not Available7531Open in IMG/M
3300006920|Ga0070748_1001485Not Available10940Open in IMG/M
3300006920|Ga0070748_1028249Not Available2314Open in IMG/M
3300006920|Ga0070748_1141634All Organisms → cellular organisms → Bacteria → Proteobacteria898Open in IMG/M
3300007229|Ga0075468_10005740All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes5095Open in IMG/M
3300007229|Ga0075468_10084648Not Available1024Open in IMG/M
3300007229|Ga0075468_10159008All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes680Open in IMG/M
3300007276|Ga0070747_1306000All Organisms → Viruses546Open in IMG/M
3300007344|Ga0070745_1204621Not Available728Open in IMG/M
3300007539|Ga0099849_1091009Not Available1223Open in IMG/M
3300007540|Ga0099847_1016166Not Available2447Open in IMG/M
3300007640|Ga0070751_1193573Not Available794Open in IMG/M
3300009074|Ga0115549_1031378Not Available2002Open in IMG/M
3300009074|Ga0115549_1049422Not Available1505Open in IMG/M
3300009074|Ga0115549_1099624Not Available973Open in IMG/M
3300009076|Ga0115550_1066774Not Available1412Open in IMG/M
3300009076|Ga0115550_1075095Not Available1304Open in IMG/M
3300009423|Ga0115548_1057787All Organisms → Viruses1357Open in IMG/M
3300009423|Ga0115548_1085837Not Available1046Open in IMG/M
3300009434|Ga0115562_1267655Not Available592Open in IMG/M
3300009495|Ga0115571_1059115Not Available1749Open in IMG/M
3300009496|Ga0115570_10002606Not Available13710Open in IMG/M
3300009497|Ga0115569_10430532Not Available566Open in IMG/M
3300009507|Ga0115572_10631916Not Available589Open in IMG/M
3300010368|Ga0129324_10363882Not Available562Open in IMG/M
3300011258|Ga0151677_1008050Not Available10997Open in IMG/M
3300017721|Ga0181373_1025751Not Available1094Open in IMG/M
3300017725|Ga0181398_1066471Not Available866Open in IMG/M
3300017729|Ga0181396_1044385All Organisms → Viruses886Open in IMG/M
3300017749|Ga0181392_1082117All Organisms → Viruses970Open in IMG/M
3300017770|Ga0187217_1068026Not Available1229Open in IMG/M
3300020165|Ga0206125_10012043Not Available5942Open in IMG/M
3300020165|Ga0206125_10035970Not Available2604Open in IMG/M
3300020165|Ga0206125_10053947Not Available1927Open in IMG/M
3300020165|Ga0206125_10116706Not Available1108Open in IMG/M
3300020166|Ga0206128_1014161Not Available4851Open in IMG/M
3300020166|Ga0206128_1253659All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Anaerotruncus646Open in IMG/M
3300020166|Ga0206128_1267475Not Available621Open in IMG/M
3300020169|Ga0206127_1151176Not Available897Open in IMG/M
3300020182|Ga0206129_10034406Not Available3509Open in IMG/M
3300020595|Ga0206126_10033582All Organisms → cellular organisms → Bacteria3059Open in IMG/M
3300020595|Ga0206126_10166592Not Available1041Open in IMG/M
3300021085|Ga0206677_10303217Not Available638Open in IMG/M
3300021371|Ga0213863_10003390Not Available11006Open in IMG/M
3300021957|Ga0222717_10203540Not Available1173Open in IMG/M
3300021957|Ga0222717_10453035Not Available699Open in IMG/M
3300021958|Ga0222718_10004788Not Available11151Open in IMG/M
3300021958|Ga0222718_10005248Not Available10556Open in IMG/M
3300021959|Ga0222716_10134694Not Available1629Open in IMG/M
3300021960|Ga0222715_10111130Not Available1755Open in IMG/M
3300022069|Ga0212026_1064595Not Available555Open in IMG/M
3300022072|Ga0196889_1062818Not Available707Open in IMG/M
(restricted) 3300023210|Ga0233412_10076324Not Available1387Open in IMG/M
3300024180|Ga0228668_1054062Not Available789Open in IMG/M
3300024313|Ga0228624_1042677Not Available929Open in IMG/M
3300024319|Ga0228670_1039750Not Available1105Open in IMG/M
3300024413|Ga0233393_1013240Not Available2214Open in IMG/M
3300024413|Ga0233393_1045183All Organisms → cellular organisms → Bacteria1057Open in IMG/M
3300024413|Ga0233393_1054817All Organisms → Viruses936Open in IMG/M
3300025070|Ga0208667_1000370Not Available20052Open in IMG/M
3300025084|Ga0208298_1035850Not Available1018Open in IMG/M
3300025085|Ga0208792_1047853Not Available808Open in IMG/M
3300025483|Ga0209557_1006836Not Available4749Open in IMG/M
3300025483|Ga0209557_1105421Not Available573Open in IMG/M
3300025508|Ga0208148_1053128All Organisms → cellular organisms → Bacteria993Open in IMG/M
3300025508|Ga0208148_1128800Not Available514Open in IMG/M
3300025543|Ga0208303_1009415Not Available3072Open in IMG/M
3300025543|Ga0208303_1010440All Organisms → cellular organisms → Bacteria2888Open in IMG/M
3300025570|Ga0208660_1064789All Organisms → cellular organisms → Bacteria870Open in IMG/M
3300025577|Ga0209304_1026752Not Available1752Open in IMG/M
3300025620|Ga0209405_1050857All Organisms → Viruses1415Open in IMG/M
3300025621|Ga0209504_1016869All Organisms → cellular organisms → Bacteria2955Open in IMG/M
3300025645|Ga0208643_1007300All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes4521Open in IMG/M
3300025645|Ga0208643_1058279All Organisms → cellular organisms → Bacteria1160Open in IMG/M
3300025645|Ga0208643_1080739All Organisms → Viruses927Open in IMG/M
3300025654|Ga0209196_1097008Not Available882Open in IMG/M
3300025668|Ga0209251_1172553Not Available545Open in IMG/M
3300025696|Ga0209532_1093069All Organisms → cellular organisms → Bacteria → Proteobacteria1052Open in IMG/M
3300025806|Ga0208545_1093579All Organisms → Viruses798Open in IMG/M
3300025806|Ga0208545_1108982Not Available712Open in IMG/M
3300025809|Ga0209199_1145582All Organisms → Viruses893Open in IMG/M
3300025840|Ga0208917_1111317All Organisms → cellular organisms → Bacteria989Open in IMG/M
3300025849|Ga0209603_1033289All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2969Open in IMG/M
3300026479|Ga0228622_1007169All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3768Open in IMG/M
3300026479|Ga0228622_1045876Not Available1039Open in IMG/M
3300028297|Ga0228617_1056624Not Available1081Open in IMG/M
3300028416|Ga0228614_1106059Not Available504Open in IMG/M
3300028598|Ga0265306_10255640All Organisms → Viruses937Open in IMG/M
3300028599|Ga0265309_10167048Not Available1358Open in IMG/M
3300028599|Ga0265309_10388549Not Available912Open in IMG/M
3300028599|Ga0265309_10888705All Organisms → Viruses612Open in IMG/M
3300034418|Ga0348337_000721Not Available28883Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous26.17%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine16.82%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater10.28%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater10.28%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine6.54%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine5.61%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water5.61%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine3.74%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater3.74%
SedimentEnvironmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment3.74%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.93%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.93%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.93%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.93%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.93%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine0.93%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine0.93%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.93%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573025Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-FOS-0p8-Hyp-75mEnvironmentalOpen in IMG/M
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000928Marine plume microbial communities from the Columbia River - 25 PSUEnvironmentalOpen in IMG/M
3300001344Pelagic Microbial community sample from North Sea - COGITO 998_met_02EnvironmentalOpen in IMG/M
3300001348Pelagic Microbial community sample from North Sea - COGITO 998_met_04EnvironmentalOpen in IMG/M
3300001351Pelagic Microbial community sample from North Sea - COGITO 998_met_03EnvironmentalOpen in IMG/M
3300001352Pelagic Microbial community sample from North Sea - COGITO 998_met_07EnvironmentalOpen in IMG/M
3300003580Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNAEnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006874Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007640Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28EnvironmentalOpen in IMG/M
3300009074Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430EnvironmentalOpen in IMG/M
3300009076Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511EnvironmentalOpen in IMG/M
3300009423Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423EnvironmentalOpen in IMG/M
3300009434Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300009497Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300011258Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeateEnvironmentalOpen in IMG/M
3300017721Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaGEnvironmentalOpen in IMG/M
3300017725Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29EnvironmentalOpen in IMG/M
3300017729Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300020165Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300020169Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1EnvironmentalOpen in IMG/M
3300020182Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2EnvironmentalOpen in IMG/M
3300020595Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300022069Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300024180Seawater microbial communities from Monterey Bay, California, United States - 82DEnvironmentalOpen in IMG/M
3300024313Seawater microbial communities from Monterey Bay, California, United States - 29DEnvironmentalOpen in IMG/M
3300024319Seawater microbial communities from Monterey Bay, California, United States - 85DEnvironmentalOpen in IMG/M
3300024413Seawater microbial communities from Monterey Bay, California, United States - 21DEnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025483Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025508Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025570Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025577Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)EnvironmentalOpen in IMG/M
3300025620Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)EnvironmentalOpen in IMG/M
3300025621Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025654Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509 (SPAdes)EnvironmentalOpen in IMG/M
3300025668Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025696Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)EnvironmentalOpen in IMG/M
3300025806Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025809Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)EnvironmentalOpen in IMG/M
3300025840Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025849Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)EnvironmentalOpen in IMG/M
3300026479Seawater microbial communities from Monterey Bay, California, United States - 26DEnvironmentalOpen in IMG/M
3300028297Seawater microbial communities from Monterey Bay, California, United States - 18DEnvironmentalOpen in IMG/M
3300028416Seawater microbial communities from Monterey Bay, California, United States - 15DEnvironmentalOpen in IMG/M
3300028598Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160420 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300028599Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160524 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300034418Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GS310G0146KB_002004002189573025Marine EstuarineMEETLKEIERYLEVTYPDDWFLPSKLDILRLKFLSELKQQKIDDLKKQISKLKN
DelMOSum2010_1001709033300000101MarineMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISDLKN*
OpTDRAFT_1019124613300000928Freshwater And MarineMEETLKEIERYLEVTYPDDWFLPSKLDILRLKFLSELKQQKIDDLKKQILDLNK*
JGI20152J14361_1002755723300001344Pelagic MarineMEEALKEIQKYIEITYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLDKLK*
JGI20152J14361_1002778413300001344Pelagic MarineFKEIENYIKVNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLDKL*
JGI20152J14361_1005801933300001344Pelagic MarineMEETXKEIENYIKLNYPDDWFLPKKLDILRLKFLSELKQQKIDDLKKQI
JGI20154J14316_1019273513300001348Pelagic MarineMEETLKEIERYLEVTYPDDWFLPGKLNILRLKFLSELKQQKIDDLKKQISDLK
JGI20153J14318_1004452423300001351Pelagic MarineMEETLKEIENYIKLNYPDDWFLPKKLDILRLKFLSELKQQKIDDLKKQISKLDKLK*
JGI20157J14317_1019789413300001352Pelagic MarineMEETLKEIQRYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISDLKN*
JGI26260J51721_104066333300003580MarineMEETLREIERYLEVTYPDDWFLPSKLDILRLKFLAELKQQKIDDLKKQISKLKN*
Ga0066224_132560123300004457MarineMEETLKEIENYIKVNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLKN*
Ga0075474_1001718943300006025AqueousMEETLKEIQNYIEVNYPDDWFLPGKLEILRLKFLAELKQQKIDQLKKEILELK*
Ga0075466_103983923300006029AqueousMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQILDLNKL*
Ga0098048_1000330223300006752MarineMEETLKEIEKYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLDKLK*
Ga0098055_101112773300006793MarineMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLDKLK*
Ga0075475_10004036103300006874AqueousMEETLKEIQNYIKVNYPDDWFLPVKLEILKLKFLAELKQQKINQLKKEILELK*
Ga0070748_100148593300006920AqueousMEETLKEIQNYIKLNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLDKLK*
Ga0070748_102824933300006920AqueousMEETLKEIERYLEVTYPDDWFLPSKLDILRLKFLSELKQQKIDDLKKQISKLKN*
Ga0070748_114163423300006920AqueousMEETLKEIERYLEVTYPDDWFLPSKLEILRLKFLSELKQLQLDQLKKEILELKN*
Ga0075468_1000574013300007229AqueousETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQILDLNKL*
Ga0075468_1008464823300007229AqueousIKTIKVMEETLKEIQNYIKLNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLDKLK*
Ga0075468_1015900823300007229AqueousMEEALKEIQNYINLNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQIKDLNKL*
Ga0070747_130600023300007276AqueousMEETLKEIQKYIEITYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQIKDLNKL*
Ga0070745_120462123300007344AqueousMEETLKEIERYLEVTYPDDWFLPSKLDILRFKFLAELKQQKIDDLKKQISKLDKLK*
Ga0099849_109100943300007539AqueousMEETLKEIQKYIEVTYPDEWYLPNKLEILRLKFLAELKQQKIDQLKKEILELKN*
Ga0099847_101616633300007540AqueousMEETLKEIQRYLEVTYPDDWFLTSKLDILRLKFLAELKQQKIDDLKKQISKLKN*
Ga0070751_119357323300007640AqueousMEETLKEIQNYIKVNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLDKLK*
Ga0115549_103137823300009074Pelagic MarineMEETFKEIQKYIEITYPDDWFLPGKLDILKLKFLSELKQQKIDDLKKQISKLDKLK*
Ga0115549_104942223300009074Pelagic MarineMEETFKEIENYIKVNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKTISKLQELK*
Ga0115549_109962433300009074Pelagic MarineENYIKLNYPDDWFLPKKLDILRLKFLSELKQQKIDDLKKQIKDLNKL*
Ga0115550_106677413300009076Pelagic MarineMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSALKQQKIDDLKKQISDLKN*
Ga0115550_107509543300009076Pelagic MarineMEETLKEIENYIKLNYPDDWFLPKKLDILRLKFLSELKQQKIDDLKKQI
Ga0115548_105778733300009423Pelagic MarineMEETLKEIENYIKLNYPDDWFLPKKLDILRLKFLSELKQQKIDDLKKQIKDLNKL*
Ga0115548_108583713300009423Pelagic MarineKTIKVMEETFKEIENYIKVNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLDKL
Ga0115562_126765523300009434Pelagic MarineMEETLKEIERYLEVTYPDDWFIPGKLNILRLKFLSELKQQKIDDLKKQISDLKN*
Ga0115571_105911533300009495Pelagic MarineMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQITDLNKL*
Ga0115570_10002606183300009496Pelagic MarineMEETLKEIERYLEVTYPDDWFIPAKLDILRLKFLSELKQQKIDDLKKQITDLNKL*
Ga0115569_1043053223300009497Pelagic MarineMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQI
Ga0115572_1063191613300009507Pelagic MarineEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSALKQQKIDDLKKQISDLKN*
Ga0129324_1036388223300010368Freshwater To Marine Saline GradientMEETLKEIQNYIEVNYPDDWFLPVKLEILRLKFLAELKQQKIDQLKKEILELK*
Ga0151677_1008050173300011258MarineMEEALKEIENYIKVNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLDKLK*
Ga0181373_102575113300017721MarineMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQILDLNK
Ga0181398_106647123300017725SeawaterMEEAFKEIENYIKVNYPDDWFLPGKLYILRLKFLSELKQQKIDDLKKTISKLQELKKLF
Ga0181396_104438533300017729SeawaterMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDL
Ga0181392_108211733300017749SeawaterMEETLKEIERYLEVTYPDDWFLPSKLDILRLKFLSELKQQKIDDLKKQILDLNK
Ga0187217_106802633300017770SeawaterMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKK
Ga0206125_1001204343300020165SeawaterMEETLKEIQNYIKLNYPDDWFLLGKLDILRLKFLSELKQQKIDDLKKQISKLDKL
Ga0206125_1003597033300020165SeawaterMEETFKEIENYIKVNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKTISKLQELK
Ga0206125_1005394733300020165SeawaterMEETFKEIENYIKVNYPDDWFLPGKLDVLRLKFLSELKQQKIDDLKKQISDLNK
Ga0206125_1011670623300020165SeawaterMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQITDLNKL
Ga0206128_101416183300020166SeawaterMEETLKEIERYLEVTYPDDWFLPVKLDILRLKFLLELKQQKIDDSKKQITDLNKL
Ga0206128_125365923300020166SeawaterETLKEIENYIKLNYPDDWFLPKKLDILRLKFLSELKQQKIDDLKKQIKDLNKL
Ga0206128_126747523300020166SeawaterIQRYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISDLKN
Ga0206127_115117623300020169SeawaterMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSALKQQKIDDLKKQISDLKN
Ga0206129_1003440623300020182SeawaterMEETLKEIENYIKLNYPDDWFLPKKLDILRLKFLSELKQQKIDDLKKQISKLDKL
Ga0206126_1003358283300020595SeawaterMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSALKQQKIDDLKKQI
Ga0206126_1016659233300020595SeawaterIKTIKVMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQITDLNK
Ga0206677_1030321713300021085SeawaterMEETLKEIERYLEVTYPDDWFLPSKLDILRLKFLSELKQQKIDDLKKQISDLKN
Ga0213863_1000339023300021371SeawaterMEETLKVIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISDLKN
Ga0222717_1020354033300021957Estuarine WaterMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISDLKN
Ga0222717_1045303523300021957Estuarine WaterMEETLKEIERYLEVTYPDDWFLPGKLDILRLKLLSELKQQKIDDLKKQISKLKN
Ga0222718_1000478873300021958Estuarine WaterMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQILKLNK
Ga0222718_1000524843300021958Estuarine WaterMEETLKEIQRYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQILDLNK
Ga0222716_1013469423300021959Estuarine WaterMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSKLKQQKIDDLKKQISDLKN
Ga0222715_1011113023300021960Estuarine WaterMEETLKEIERYLEVTYPDDWFIPGKLDILRLKFLSELKQQKIDDLKKQITDLNKLKYFF
Ga0212026_106459523300022069AqueousMEETLKEIQNYIEVNYPDDWFLPGKLEILRLKFLAELKQQKIDQLKKEILELK
Ga0196889_106281813300022072AqueousVMEETLKEIQNYIKLNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLDKLK
(restricted) Ga0233412_1007632443300023210SeawaterMEETLREIERYLEVTYPDDWFLPSKLDILRLKFLAELKQQKIDDLKKQISKLKN
Ga0228668_105406233300024180SeawaterMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLKN
Ga0228624_104267733300024313SeawaterMEETLKEIERYLEVTYPDDWFLPSKLDILRLKFLSELKQQKIDDLKKQISKFKN
Ga0228670_103975023300024319SeawaterMEEILKEIERYLEVTYPDDWFLPSKLDILRLKFLSELKQQKIDDLKKQISDLKN
Ga0233393_101324013300024413SeawaterMEETLKEIERYLEVTYPDDWFLPSKLDILRLKFLSELKQQKIDDLK
Ga0233393_104518333300024413SeawaterLKEIERYLEVTYPDDWFLPSKLDILRLKFLSELKQQKIDDLKKQISDLKN
Ga0233393_105481713300024413SeawaterMEEILKEIERYLEVTYPDDWFLPSKLDILRLKFLSELKQQKIDDLK
Ga0208667_100037063300025070MarineMEETLKEIEKYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLDKLK
Ga0208298_103585013300025084MarineKMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLDKLK
Ga0208792_104785323300025085MarineMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLDKLK
Ga0209557_100683613300025483MarineMEETLKEIERYLEVTYPDDWFLPSKLDILRLKFLAELKQQKIDDLKKQ
Ga0209557_110542113300025483MarineMEETLREIERYLEVTYPDDWFLPSKLDILRLKFLAELKQQKIDDLKKQ
Ga0208148_105312833300025508AqueousKTIKVMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQILDLNKL
Ga0208148_112880013300025508AqueousMEETLKEIQNYIKLNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLD
Ga0208303_100941543300025543AqueousMEETLKEIQRYLEVTYPDDWFLTSKLDILRLKFLAELKQQKIDDLKKQISKLKN
Ga0208303_101044023300025543AqueousMEEALKEIQNYINLNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQIKDLNKL
Ga0208660_106478923300025570AqueousMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQILDLNKL
Ga0209304_102675233300025577Pelagic MarineMEETLKEIENYIKLNYPDDWFLPKKLDILRLKFLSELKQQKIDDLKKQIKDLNKL
Ga0209405_105085723300025620Pelagic MarineMEETLKEIQRYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISDLKN
Ga0209504_101686983300025621Pelagic MarineMEETLKEIENYIKLNYPDDWFLPKKLDILRLKFLSELKQQKIDDLKKQISKLDKLK
Ga0208643_100730033300025645AqueousMEETLKEIQNYIKLNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLDKLK
Ga0208643_105827933300025645AqueousMEETLKEIQKYIEITYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQIKDLNKL
Ga0208643_108073923300025645AqueousMEETLKEIERYLEVTYPDDWFLPSKLEILRLKFLSELKQLQLDQLKKEILELKN
Ga0209196_109700813300025654Pelagic MarineMEETLKEIERYLEVTYPDDWFIPGKLNILRLKFLSELKQQKIDDLKKQIS
Ga0209251_117255323300025668MarineMEETLKEIERYLEVTYPDDWFLPSKLDILRLKFLAELKQQKIDDLKKQISKLKN
Ga0209532_109306933300025696Pelagic MarineIKTIKVMEETFKEIENYIKVNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKLDK
Ga0208545_109357933300025806AqueousMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDD
Ga0208545_110898213300025806AqueousMEETLKEIQNYIKLNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISK
Ga0209199_114558233300025809Pelagic MarineMEETLKEIERYLEVTYPDDWFIPGKLNILRLKFLSELKQQKIDDLKKQISDLKN
Ga0208917_111131723300025840AqueousMEETLKEIQNYIKVNYPDDWFLPVKLEILKLKFLAELKQQKINQLKKEILELK
Ga0209603_103328923300025849Pelagic MarineMEETLKEIERYLEVTYPDDWFIPAKLDILRLKFLSELKQQKIDDLKKQITDLNKL
Ga0228622_100716963300026479SeawaterKEIERYLEVTYPDDWFLPSKLDILRLKFLSELKQQKIDDLKKQISKLKN
Ga0228622_104587623300026479SeawaterMEEAFKEIENYVKVNYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQILDLNKL
Ga0228617_105662423300028297SeawaterMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKFKN
Ga0228614_110605913300028416SeawaterMEETLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQISKL
Ga0265306_1025564013300028598SedimentMEETFKEIQKYIEITYPDDWSLPGKLDILRLKFLSELKQQKIDDLKKQISKLDKLK
Ga0265309_1016704823300028599SedimentMEETLKEIQRYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQILDLKN
Ga0265309_1038854923300028599SedimentTLKEIERYLEVTYPDDWFLPGKLDILRLKFLSELKQQKIDDLKKQITDLNKL
Ga0265309_1088870513300028599SedimentMEETLKEIQNYIKLNYPDDWFLLGKLDILRLKFLSELKQQKIDDLKKQISK
Ga0348337_000721_13868_140293300034418AqueousMEETLKEIQNYIEVNYPDDWFLPGKLEILKLKFLAELKQQKINQLKKEILELK


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.