Metagenome / Metatranscriptome Family F091827

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091827
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	102 residues
Representative Sequence	GRRSFELNFVDGSPRGAVRAWYAGGQPSMTGETRPDNGTLVLWDERGRKRAQVDVRDRQVVTRAWDEEGREERYQEAKLAKAMPANRNLGFIMQLWAVGIGIQ
Number of Associated Samples	98
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.80 %
% of genes near scaffold ends (potentially truncated)	94.39 %
% of genes from short scaffolds (< 2000 bps)	88.79 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.523 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (9.346 % of family members)
Environment Ontology (ENVO)	Unclassified (33.645 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (31.776 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.39% β-sheet: 27.18% Coil/Unstructured: 52.43%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01425	Amidase	73.83
PF02321	OEP	2.80
PF00528	BPD_transp_1	2.80
PF00496	SBP_bac_5	1.87
PF13487	HD_5	0.93
PF07721	TPR_4	0.93
PF00873	ACR_tran	0.93
PF00296	Bac_luciferase	0.93
PF00583	Acetyltransf_1	0.93
PF00512	HisKA	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	73.83
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	5.61
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.52 %
Unclassified	root	N/A	7.48 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.52 %
Unclassified	root	N/A	7.48 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.52 %
Unclassified	root	N/A	7.48 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	68.22 %
Unclassified	root	N/A	7.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.54 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	68.22 %
Unclassified	root	N/A	7.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.80 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	68.22 %
Unclassified	root	N/A	7.48 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	51.40 %
Unclassified	root	N/A	7.48 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	51.40 %
Unclassified	root	N/A	7.48 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_100343625	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	557	Open in IMG/M
3300000559\|F14TC_104464042	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	571	Open in IMG/M
3300003347\|JGI26128J50194_1000807	All Organisms → cellular organisms → Bacteria	1860	Open in IMG/M
3300004025\|Ga0055433_10153318	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	559	Open in IMG/M
3300004058\|Ga0055498_10013238	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1119	Open in IMG/M
3300004157\|Ga0062590_100554312	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	996	Open in IMG/M
3300005093\|Ga0062594_102955490	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300005333\|Ga0070677_10293594	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300005340\|Ga0070689_100981717	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	750	Open in IMG/M
3300005444\|Ga0070694_100022899	All Organisms → cellular organisms → Bacteria	4010	Open in IMG/M
3300005458\|Ga0070681_11189753	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	684	Open in IMG/M
3300005549\|Ga0070704_100308749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1321	Open in IMG/M
3300005549\|Ga0070704_100432198	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1130	Open in IMG/M
3300005616\|Ga0068852_102655033	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300005843\|Ga0068860_102654384	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300005878\|Ga0075297_1013108	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300006041\|Ga0075023_100218479	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300006755\|Ga0079222_10190405	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1221	Open in IMG/M
3300006806\|Ga0079220_12109343	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	505	Open in IMG/M
3300006847\|Ga0075431_100557450	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300006852\|Ga0075433_10008156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	8341	Open in IMG/M
3300007076\|Ga0075435_100988748	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	734	Open in IMG/M
3300009078\|Ga0105106_11159147	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300009087\|Ga0105107_10916466	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300009094\|Ga0111539_10625318	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1254	Open in IMG/M
3300009147\|Ga0114129_10102251	All Organisms → cellular organisms → Bacteria	3963	Open in IMG/M
3300009176\|Ga0105242_11643951	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	677	Open in IMG/M
3300009553\|Ga0105249_10560010	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1195	Open in IMG/M
3300009806\|Ga0105081_1023325	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	777	Open in IMG/M
3300010371\|Ga0134125_12644629	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	546	Open in IMG/M
3300010400\|Ga0134122_12508682	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	565	Open in IMG/M
3300011270\|Ga0137391_10013857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	6521	Open in IMG/M
3300012582\|Ga0137358_10647658	Not Available	707	Open in IMG/M
3300012685\|Ga0137397_10257502	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1300	Open in IMG/M
3300012923\|Ga0137359_11733583	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	512	Open in IMG/M
3300012927\|Ga0137416_10870307	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	800	Open in IMG/M
3300014877\|Ga0180074_1136657	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	549	Open in IMG/M
3300014878\|Ga0180065_1168567	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	504	Open in IMG/M
3300014881\|Ga0180094_1007007	All Organisms → cellular organisms → Bacteria	2023	Open in IMG/M
3300014884\|Ga0180104_1017989	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1723	Open in IMG/M
3300015054\|Ga0137420_1053955	Not Available	544	Open in IMG/M
3300015241\|Ga0137418_11060229	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	580	Open in IMG/M
3300015374\|Ga0132255_100350546	All Organisms → cellular organisms → Bacteria → Proteobacteria	2138	Open in IMG/M
3300017959\|Ga0187779_10883896	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	614	Open in IMG/M
3300017974\|Ga0187777_10059978	All Organisms → cellular organisms → Bacteria	2454	Open in IMG/M
3300018028\|Ga0184608_10425148	Not Available	574	Open in IMG/M
3300018053\|Ga0184626_10058899	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1613	Open in IMG/M
3300018056\|Ga0184623_10375413	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	632	Open in IMG/M
3300018063\|Ga0184637_10056603	All Organisms → cellular organisms → Bacteria	2396	Open in IMG/M
3300018071\|Ga0184618_10184849	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300018075\|Ga0184632_10062331	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1618	Open in IMG/M
3300018075\|Ga0184632_10455312	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	530	Open in IMG/M
3300019487\|Ga0187893_10624924	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	678	Open in IMG/M
3300019789\|Ga0137408_1306952	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	825	Open in IMG/M
3300019881\|Ga0193707_1013114	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2797	Open in IMG/M
3300019886\|Ga0193727_1178817	Not Available	547	Open in IMG/M
3300020018\|Ga0193721_1040628	Not Available	1228	Open in IMG/M
3300020082\|Ga0206353_11760240	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	566	Open in IMG/M
3300021078\|Ga0210381_10410733	Not Available	501	Open in IMG/M
3300021086\|Ga0179596_10057847	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1637	Open in IMG/M
3300021344\|Ga0193719_10087885	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300021559\|Ga0210409_10343205	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1342	Open in IMG/M
3300022534\|Ga0224452_1073565	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1031	Open in IMG/M
3300025521\|Ga0210083_1065911	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	559	Open in IMG/M
3300025558\|Ga0210139_1099935	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	596	Open in IMG/M
3300025916\|Ga0207663_10166513	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1561	Open in IMG/M
3300025934\|Ga0207686_11668280	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300025961\|Ga0207712_10233115	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1479	Open in IMG/M
3300025999\|Ga0208417_108014	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	548	Open in IMG/M
3300026015\|Ga0208286_1011430	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	666	Open in IMG/M
3300026142\|Ga0207698_12052319	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	586	Open in IMG/M
3300026285\|Ga0209438_1119469	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	743	Open in IMG/M
3300026360\|Ga0257173_1037366	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	661	Open in IMG/M
3300026480\|Ga0257177_1051584	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	638	Open in IMG/M
3300026499\|Ga0257181_1038864	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	767	Open in IMG/M
3300027378\|Ga0209981_1041115	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	691	Open in IMG/M
3300027384\|Ga0209854_1056138	Not Available	682	Open in IMG/M
3300027384\|Ga0209854_1073350	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	603	Open in IMG/M
3300027583\|Ga0209527_1091203	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	684	Open in IMG/M
3300027651\|Ga0209217_1119876	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	742	Open in IMG/M
3300027731\|Ga0209592_1336512	Not Available	512	Open in IMG/M
3300027787\|Ga0209074_10557131	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	505	Open in IMG/M
3300028381\|Ga0268264_12369147	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	537	Open in IMG/M
3300028536\|Ga0137415_10675486	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	845	Open in IMG/M
3300028608\|Ga0247819_10758987	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	597	Open in IMG/M
3300028792\|Ga0307504_10271648	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	628	Open in IMG/M
3300028828\|Ga0307312_10399127	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	903	Open in IMG/M
3300030336\|Ga0247826_10352229	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1073	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1051727	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	866	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1135080	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	544	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1012841	All Organisms → cellular organisms → Bacteria → Proteobacteria	2002	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1051314	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	988	Open in IMG/M
3300031720\|Ga0307469_10636553	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	958	Open in IMG/M
3300031720\|Ga0307469_11402331	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	666	Open in IMG/M
3300031820\|Ga0307473_10733336	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	697	Open in IMG/M
3300031854\|Ga0310904_11308464	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	525	Open in IMG/M
3300031908\|Ga0310900_10327197	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1138	Open in IMG/M
3300031944\|Ga0310884_10286074	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	914	Open in IMG/M
3300032122\|Ga0310895_10361318	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	702	Open in IMG/M
3300032180\|Ga0307471_100529338	All Organisms → cellular organisms → Bacteria	1330	Open in IMG/M
3300032180\|Ga0307471_102270422	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	684	Open in IMG/M
3300032211\|Ga0310896_10624891	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	603	Open in IMG/M
3300033407\|Ga0214472_10728834	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	899	Open in IMG/M
3300033433\|Ga0326726_10154771	All Organisms → cellular organisms → Bacteria → Proteobacteria	2092	Open in IMG/M
3300033433\|Ga0326726_11561998	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	642	Open in IMG/M
3300033475\|Ga0310811_10080122	All Organisms → cellular organisms → Bacteria → Proteobacteria	4284	Open in IMG/M
3300033502\|Ga0326731_1065089	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	847	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.11%
Host-Associated	Host-Associated	15.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.49%
Aquatic	Environmental → Aquatic	19.63%
Plants	Host-Associated → Plants	15.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.75%
Sediment	Environmental → Aquatic → Sediment	12.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.54%
Freshwater	Environmental → Aquatic → Freshwater	3.74%
Marine	Environmental → Aquatic → Marine	3.74%
Peat	Environmental → Terrestrial → Peat	2.80%
Cave	Environmental → Terrestrial → Cave	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	12.15%
Loam	Environmental → Terrestrial → Soil → Loam	9.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.41%
Sand	Environmental → Terrestrial → Soil → Sand	6.54%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.61%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.67%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.74%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.80%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	12.15%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.41%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.54%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	6.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.35%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.67%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.74%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	3.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.80%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	2.80%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.80%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.87%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300003347	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM	Host-Associated	Open in IMG/M
3300004025	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1	Environmental	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005878	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_104	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009806	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014877	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT366_16_10D	Environmental	Open in IMG/M
3300014878	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200A_16_10D	Environmental	Open in IMG/M
3300014881	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_1Da	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025521	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1 (SPAdes)	Environmental	Open in IMG/M
3300025558	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025999	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_201 (SPAdes)	Environmental	Open in IMG/M
3300026015	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401 (SPAdes)	Environmental	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026480	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300027378	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027384	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027731	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033502	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF9FY SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1003436252	3300000559	Soil	GGTPRGSIRAWYEGGQPSMTGETRPDNGTLILWDERGRRRAQIDVRERQVVTQAWDEQGREERYDEKKLAKAFPSNRNLPFIMNLFAVGIGIQ*
F14TC_1044640421	3300000559	Soil	ELTFVDGTPRGSIRAWYEGGQPSMTGETRPDNGTLILWDERGRRRAQIDVRERQVVTQAWDEQGREERYDEKKLAKAFPTNRNLPFIMNLFAVGIGIQ*
JGI26128J50194_10008072	3300003347	Arabidopsis Thaliana Rhizosphere	CEQSAPGGMIRQGPMVGFHPNGRRSFELTFVDGTPRGSIRAWYEGGQPSMTGDTRPDNGTLILWDERGRRRAQIDVRERQVLTQAWDEQGREERYDEKKLARAFPNNRNLPFIMNLFAVGIGIQ*
Ga0055433_101533182	3300004025	Natural And Restored Wetlands	AFHPNGRRSFELTFVDGTPRGPVGAWYEGGQPSMTGETRPDNGTLVLWDERGRKRAQIDVRERQIVTRAWDEQGREERYEEAKLAKAMPTNRNLGFIMLLWAVGIGIQ*
Ga0055498_100132381	3300004058	Natural And Restored Wetlands	PSMTGETRPDNGTLVLWDERGRRRAQVDVRDRQVVTRAWDEEGREERYQEAKLAKAMPANRNLGFIMQLWAVGIGIQ*
Ga0062590_1005543121	3300004157	Soil	GETRPDNGTLVLWDEGGRKRAQIDVRDRQVVTRAWTEEGREERYEEAKLAKAMPTNRNLGFLMQLWAVGIGIQ*
Ga0062594_1029554901	3300005093	Soil	GKFQWCEQSAPGGMIRQGPMVGFHPNGRRSFELTFVDGTPRGSIRAWYEGGQPSMTGDTRPDNGTLILWDERGRRRAQIDVRERQVLTQAWDEQGREERYDEKKLARAFPNNRNLPFIMNLFAVGIGIQ*
Ga0070677_102935942	3300005333	Miscanthus Rhizosphere	GTLQWCERSGSGGSIRHGPMLGSYPSGRRRIEIYFVDGTPRGPIRAWYDSGQASAIGETRPDNGTLTLRDEAGRRRAQIDVRARQVVTQAWDADGREEKYEETKLAKTLAANRDLSFIMNIFAVGIGIQ*
Ga0070689_1009817172	3300005340	Switchgrass Rhizosphere	DGTPRGPIRAWYDSGQASAIGETRPDNGTLTLRDEAGRRRAQIDVRARQVVTQAWDADGREEKYEETKLAKTLAANRDLSFIMNIFAVGIGIQ*
Ga0070694_1000228994	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	NGRRSFELTFVDGTPRGSIRAWYEGGQPSMTGDTRPDNGTLILWDERGRRRAQIDVRERQVLTQAWDEQGREERYDEKKLARAFPNNRNLPFIMNLFAVGIGIQ*
Ga0070681_111897532	3300005458	Corn Rhizosphere	PNGRRSFELNFVDGSPRGSVRAWYEGGQPSMTGETRPDNGTLVLWDEGGRKRAQIDVRDRQVVTRAWTEEGREERYEEAKLAKAMPTNRNLGFLMQLWAVGIGIQ*
Ga0070704_1003087491	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	GPIRQGPMVGFHPNGRRSFELNFVDGSPRGTVRAWYESGQPSMTGETRPDNGTLVLWDLGGRKRAQVDVRDRQVVTRAWDEDGREQRYEEAKLVKAMPANRNLGFIMQLWAVGIGIQ*
Ga0070704_1004321982	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	SAIGETRPDNGTLTLRDENGRKRAQIDVRDRQLVTQAWDADGKEERYEEAKLAKSLAANRELALIMNLFAVGIGIQ*
Ga0068852_1026550331	3300005616	Corn Rhizosphere	GPMLGSYPSGRRRIEIYFVDGTPRGPIRAWYDSGQASAIGETRPDNGTLTLRDEAGHRRAQIDVRARQVVTQAWDADGREEKYEETKLAKTLAANRDLSFIMNIFAVGIGIQ*
Ga0068860_1026543841	3300005843	Switchgrass Rhizosphere	RAWYESGQPSMTGETRPDNGTLVLWDLGGRKRAQVDVRDRQVVTRAWDEDGREQRYEEAKLVKAMPANRNLGFIMQLWAVGIGIQ*
Ga0075297_10131082	3300005878	Rice Paddy Soil	DPGGPIRHGPMVAFYPSGRKSFEVAFVDGTPRGSIRAWYDNGEASAIGETRPDNGTLTLRDEQGRKRAQIDVRERQVVTQAWDAEGREERYEEKKLAKTLSANRNLPFIMNLFAVGIGIQ
Ga0075023_1002184792	3300006041	Watersheds	NRRLELHFVDGTPRGPIRAWYDNGQASAIGETRPDNGTLTLRDENGRKRAQIDVRDRQVATQAWDADGKEERYEEAKLAKSLAANRELALIMNLFAVGIGIQ*
Ga0079222_101904051	3300006755	Agricultural Soil	YFVDGTPRGPIRAWYDNGQASAIGETRPDNGTLTLRDEAGRRRAQIDVRSRQVATQAWDAEGREEKYEEAKLAKTLAANRDLSFIMNIFAIGIGIQ*
Ga0079220_121093432	3300006806	Agricultural Soil	PSASGDTRPDNGTLTLWDERGRRRALIEVRAREVVTRAWDEQGKGEPYQEARLAKVLAANRDLSFIMTLFAVGIGIQ*
Ga0075431_1005574501	3300006847	Populus Rhizosphere	IRQGPMVGFHPNGRRSFELNFVDGSPRGAVRAWYEGGQPSMTGETRPDNGTLVLWDERGRKRAQVDVRERQVVTRAWNEEGREERYEEAKLAKAMPTNRNLGFIMQLWAVGIGIQ*
Ga0075433_100081561	3300006852	Populus Rhizosphere	AWYDNGQISAIGETRPDNGTLTLRDEQGRRRAQIDVRDRQLVTQAWDAEGREERYEEKKLAKSLAANRELPFIMNLFAVGIGIQ*
Ga0075435_1009887482	3300007076	Populus Rhizosphere	PIRAWYDNGQISAIGETRPDNGTLTLRDEQGRRRAQIDVRDRQLVTQAWDAQGREERYEEAKLAKSLAANRELPFIMNLFAVGIGIQ*
Ga0105106_111591472	3300009078	Freshwater Sediment	GRRSFELNFVDGSPRGAVRAWYAGGQPSMTGETRPDNGTLVLWDERGRKRAQVDVRDRQVVTRAWDEEGREERYQEAKLAKAMPANRNLGFIMQLWAVGIGIQ*
Ga0105107_109164662	3300009087	Freshwater Sediment	RGAVRAWYAGGQPSMTGETRPDNGTLVLWDERGRKRAQVDVRDRQVVTRAWDEEGREERYQEAKLAKAMPANRNLGFIMQLWAVGIGIQ*
Ga0111539_106253181	3300009094	Populus Rhizosphere	RSGSGGSIRHGPMLGSYPSGRRRIEIYFVDGTPRGPIRAWYDSGQASAIGETRPDNGTLTLRDEAGRRRAQIDVRARQVVTQAWDADGREEKYEETKLAKTLAANRDLSFIMNIFAVGIGIQ*
Ga0114129_101022516	3300009147	Populus Rhizosphere	VDGTPRGPIRAWYDSGQASAIGETRPDNGTLTLRDEAGRRRAQIDVRARQVVTQAWDADGREEKYEETKLAKTLAANRDLSFIMNIFAVGIGIQ*
Ga0105242_116439511	3300009176	Miscanthus Rhizosphere	ERSGSGGSIRHGPMLGSYPSGRRRIEIYFVDGTPRGPIRAWYDSGQASAIGETRPDNGTLTLRDEAGHRRAQIDVRARQVVTQAWDADGREEKYEETKLAKTLAANRDLSFIMNIFAVGIGIQ*
Ga0105249_105600101	3300009553	Switchgrass Rhizosphere	NGRRSFELNFVDGSPRGSVRAWYEGGQPSMTGETRPDNGTLILWDERGRRRAQVDVRDRVVATRAWDEQGREERYQEAKLVKAMPANRNLGFLMQLWAVGIGIQ*
Ga0105081_10233252	3300009806	Groundwater Sand	MVGFHSTGRRSIELNFVEGTPQGTIRAWYESGELSASGETRPDNGTLTLWDERGRKRAQVDVRNRQVVTQAWDEQGRAERYEEAKLAKTLSANRDLPFVMNLFAVGIGIQ*
Ga0134125_126446292	3300010371	Terrestrial Soil	NFVDGSPRGSVRAWYEGGQPSMTGETRPDNGTLILWDERGRRRAQVDVRDRVVATRAWDEEGREERYQEAKLVKAMPANRNLGFLMQLWAVGIGIQ*
Ga0134122_125086822	3300010400	Terrestrial Soil	WCEQAAPGGTIRQGPMVAFHPNGRRSFELNFVDGSPRGSVRAWYDGGQPSMTGETRPDNGTLVLWDERGRKRAQIDVRDRQVVTRAWDETGREERYEEAKLAKAMPANRNLGFLMQLWAVGIGIQ*
Ga0137391_100138571	3300011270	Vadose Zone Soil	PMVGFHPNGRRSFELNFVDGSPRGAVHAWYEGGQPSMTGETRPDNGTLVLWDERGRKRAQVDVRERQVVTRAWAEDGREERYEETKLAKAMPTNRNLGFIMQLWAVGIGIQ*
Ga0137358_106476583	3300012582	Vadose Zone Soil	RPDNGTLVLWDLGGRKRAQVDVRDRQVVTRAWDEDGREQRYEEAKLAKAMPANRNLGFIMQLWAVGIGIQ*
Ga0137397_102575021	3300012685	Vadose Zone Soil	GRRSFELNFVDGSPRGSVRAWYEGGQPSMTGETRPDNGTLILWDERGRRRAQVDVRDRVVATRAWDEEGREERYQEAKLVKAMPANRNLGFLMQLWAVGIGIQ*
Ga0137359_117335831	3300012923	Vadose Zone Soil	LHFVDGTPRGPIRAWYDNGQISAIGETRPDNGTLTLRDENGRRRAQIDVRDRQLVTQAWDAEGREERYEEAKLAKSLAANRELAFIMNLFAVGIGIQ*
Ga0137416_108703072	3300012927	Vadose Zone Soil	VGRRSFELNFVDGSPRGTVRAWYEGGQPSMTGETRPDNGTLVLWDLGGRKRAQVDVRDRQVVTRAWDEDGREQRYEEAKLAKAMPANRNLGFIMQLWAVGIGIQ*
Ga0180074_11366571	3300014877	Soil	GPMVAFHPNGRRSFELTFVDGSPRGAVRAWYEDGQPSMTGETRPDNGTLVLWDERGRKRAQIDVRERQVVTRAWDAEGREERYEEAKLVKAMPANRNLGFIMQLWAVGIGIQ*
Ga0180065_11685672	3300014878	Soil	NGRRRVDLNFVDGSPRGAVRAWYAAGQPSMTGETRPDNGTLVLWDERGRKRAQVDVRDRQVVTRAWDEEGREERYEETKLAKAMPTNRNLGFIMQLWAVGIGMQ*
Ga0180094_10070073	3300014881	Soil	GDTRPDNGTLVLWDERGRKRAQVDVRARQVVTRAWDEEGREERYEEAKLAKAMPTNRSLGFIMQLWAVGIGMQ*
Ga0180104_10179892	3300014884	Soil	GGQPSMTGDTRPDNGTLVLWDERGRKRAQVDVRARQVVTRAWDEEGREERYEEAKLAKAMPTNRSLGLIMQLWAVGIGMQ*
Ga0137420_10539551	3300015054	Vadose Zone Soil	MVGFHPNGRRSFELNFVDGSPRGTVRAWYEGGQPSMTGETRPDNGTLVLWDLGGRKRAQVDVRDRQVVTRAWDEDGREQRYEEAKLAKAMPANRNLGFIMQLWAVGIGIQ*
Ga0137418_110602292	3300015241	Vadose Zone Soil	ESEAGKFHWCEQTSPGGTIRQGPMVGFHPNGRRSFELNFVDGSPRGSVRAWYEGGQPSMTGETRPDNGTLILWDERGRRRAQVDVRDRVVATRAWDEEGREERYQEAKLVKAMPANRNLGFLMQLWAVGIGIQ*
Ga0132255_1003505463	3300015374	Arabidopsis Rhizosphere	GKFQWCEQSAPGGTIRQGPMVGFHPNGRRSFEISFVDGTPRGSIRAWYEGGQPSMTGETRPDNGTLILWDERGRRRAQIDVRDRQVVTQAWDEQGREERYDEKKLAKAFPTNRNLPFIMNMFAVGIGIQ*
Ga0187779_108838962	3300017959	Tropical Peatland	ETRPDNGVLTLRDERGRRRAQIDVRDREIVAQAWDEQGRAEPYDRAKLARAMPANRDLLFIMSLWAAGIGIP
Ga0187777_100599783	3300017974	Tropical Peatland	RGPIRAWYESGEVSASGETRPDNGALTLRDERGRRRAQIDVRDREIAAQAWDEQGRAEPYDRTRLARVMPANRDLLFIMSLWAAGIGIP
Ga0184608_104251481	3300018028	Groundwater Sediment	SMTGETRPDNGTLVLWDLGGRKRAQVDVRDRQVVTRAWDEDGREQRYEEAKLAKAMPANRNLGFIMQLWAVGIGIQ
Ga0184626_100588991	3300018053	Groundwater Sediment	TIRQGPMVAFHPNGRRSFELNFVDGSPRGPIRAWYEGGQPSMTGETRPDNGTLVLWDERGRKRAQVDVRDRQVVTRAWAEDGREERYEETKLAKAMPTNRNLGFIMQLWAVGIGIQ
Ga0184623_103754131	3300018056	Groundwater Sediment	VRAWYEGGQPSMTGETRPDNGTLVLWDERGRKRAQVDVRERQVVTRAWAEDGREERYEETKLAKAMPTNRNLGFIMQLWAVGIGIQ
Ga0184637_100566031	3300018063	Groundwater Sediment	SEAGKFHWCEQAAPGGTIRQGPMVGFHPNGRRSFELNFVDGSPRGAVHAWYEGGQPSMTGETRPDNGTLVLWDERGRKRAQVDVRERQVVTRAWAEDGREERYEETKLAKAMPTNRNLGFIMQLWAVGIGIQ
Ga0184618_101848492	3300018071	Groundwater Sediment	RAWYEGGQPSMTGETRPDNGTLVLWDLGGRKRAQVDVRERQVVTRAWDEDGREQRYEEAKLAKAMPANRNLGFIMQLWAVGIGIQ
Ga0184632_100623312	3300018075	Groundwater Sediment	MVGFHPNGRRSFELNFVDGSPRGAVRAWYEGGQPSMTGETRPDNGTLVLWDERGRKRAQVDVRDRQVVTRAWNEEGSEERYEEAKLAKAMPTNRNLGFIMQLWAVGIGIQ
Ga0184632_104553121	3300018075	Groundwater Sediment	KFHGWEQPAPGGTTRQGPMVGFHPNGRRSFELNFVDGSPRGAVHAWYEGGQPSMTGETRPDNGTLVLWDERGRKRAQVDVRERQVVTRAWAEDGREERYEETKLAKAMPTNRNLGFIMQLWAVGIGIQ
Ga0187893_106249241	3300019487	Microbial Mat On Rocks	IRQGPMVGFHPNGRRSFELNFVDGSPRGAVRAWYEGGQPSMTGETRPDNGTLVLWDESGRKRAQVDVRERQVVTRAWNEEGREERYEEAKLAKAMPTNRNLGFIMQLWAVGIGIQ
Ga0137408_13069522	3300019789	Vadose Zone Soil	PRGSVRAWYEGGQPSMTGETRPDNGTLILWDERGRRRAQVDVRDRVVATRAWDEEGREERYQEAKLVKAMPANRNLGFLMQLWAVGIGIQ
Ga0193707_10131143	3300019881	Soil	NFVDGSPRGTVRAWYEGGQPSMTGETRPDNGTLVLWDLGGRKRAQVDVRDRQVVTRAWDEDGREQRYEEAKLAKAMPANRNLGFIMQLWAVGIGIQ
Ga0193727_11788172	3300019886	Soil	GSPRGTVRAWYEGGQPSMTGETRPDNGTLVLWDLGGRKRAQVDVRERQVVTRAWDEDGREQRYEEAKLAKAMPANRNLGFIMQLWAVGIGIQ
Ga0193721_10406282	3300020018	Soil	MVGFHPNGRRSFELNFVDGSPRGTVRAWYEGGQPSMTGETRPDNGTLVLWDLGGRKRAQVDVRDRQVVTRAWDEDGREQRYEEAKLAKAMPANRNLGFIMQLWAVGIGIQ
Ga0206353_117602402	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	YFVDGTPRGPIRAWYDSGQASAIGETRPDNGTLTLRDEAGRRRAQIDVRARQVVTQAWDADGREEKYEETKLAKTLAANRDLSFIMNIFAVGIGIQ
Ga0210381_104107331	3300021078	Groundwater Sediment	VGFHPNGRRSFELNFVDGSPRGTVRAWYEGGQPSMTGETRPDNGTLVLWDLGGRKRAQVDVRERQVVTRAWDEDGREQRYEEAKLAKAMPANRNLGFIMQLWAVGIGIQ
Ga0179596_100578472	3300021086	Vadose Zone Soil	PIRAWYENGQASAIGETRPDNGTLTLRDENGRRRAQIDVRDRQLVTQAWDAEGREERYEEAKLAKSLAANRELAFIMNLFAVGIGIQ
Ga0193719_100878852	3300021344	Soil	ELNFVDGSPRGTVRAWYEGGQPSMTGETRPDNGTLVLWDLGGRKRAQVDVRERQVVTRAWDEDGREQRYEEAKLAKAMPANRNLGFIMQLWAVGIGIQ
Ga0210409_103432051	3300021559	Soil	FVDGTPRGPIRAWYDNGQISAIGETRPDNGTLTLRDEQGRRRAQIDVRDRQLVTQAWDAQGREERYEEAKLAKSLAANRELPFIMNLFAVGIGIQ
Ga0224452_10735652	3300022534	Groundwater Sediment	RGPVRAWYEGGQPSMTGETRPDNGTLVLWDERGRKRAQVDVRDRQVVTRAWNEEGSEERYEEAKLAKAMPTNRNLGFIMQLWAVGIGIQ
Ga0210083_10659112	3300025521	Natural And Restored Wetlands	AFHPNGRRSFELTFVDGTPRGPVGAWYEGGQPSMTGETRPDNGTLVLWDERGRKRAQIDVRERQIVTRAWDEQGREERYEEAKLAKAMPTNRNLGFIMLLWAVGIGIQ
Ga0210139_10999351	3300025558	Natural And Restored Wetlands	QPSMTGETRPDNGTLVLWDERGRKRAQIDVRERQIVTRAWDEQGREERYEEAKLAKAMPTNRNLGFIMLLWAVGIGIQ
Ga0207663_101665132	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	GPIRAWYDNGQISAIGETRPDNGTLTLRDEQGRRRAQIDVRDRQLVTQAWDAEGHEERYEEAKLAKSLAANRELPFIMNLFAVGIGIQ
Ga0207686_116682802	3300025934	Miscanthus Rhizosphere	IRHGPMLGSYPSGRRRIEIYFVDGTPRGPIRAWYDSGQAGAIGETRPDNGTLTLRDEAGHRRAQIDVRARQVVTQAWDADGREEKYEETKLAKTLAANRDLSFIMNIFAVGIGIQ
Ga0207712_102331151	3300025961	Switchgrass Rhizosphere	LNFVDGSPRGSVRAWYEGGQPSMTGETRPDNGTLILWDERGRRRAQVDVRDRVVATRAWDEQGREERYQEAKLVKAMPANRNLGFLMQLWAVGIGIQ
Ga0208417_1080141	3300025999	Rice Paddy Soil	IRHGPMVAFYPSGRKSFEVAFVDGTPRGAIRAWYDNGEASAIGETRPDNGTLTLRDEQGRKRAQIDVRERQVVTQAWDAEGREERYEEKKLAKTLSANRNLPFIMNLFAVGIGIQ
Ga0208286_10114301	3300026015	Rice Paddy Soil	GETGPDNGTLILRDEQGRKRAQVEVRNRQVVTQAWDAEGREETYDEAKLVRALPANRDLGFIMRLFAVGVGIQ
Ga0207698_120523192	3300026142	Corn Rhizosphere	GSGGSIRHGPMLGSYPSGRRRIEIYFVDGTPRGPIRAWYDSGQASAIGETRPDNGTLTLRDEAGHRRAQIDVRARQVVTQAWDADGREEKYEETKLAKTLAANRDLSFIMNIFAVGIGIQ
Ga0209438_11194692	3300026285	Grasslands Soil	EGGQPSMTGETRPDNGTLILWDERGRRRAQVDVRDRVVATRAWDEEGREERYQEAKLVKAMPANRNLGFLMQLWAVGIGIQ
Ga0257173_10373662	3300026360	Soil	AWYENGQASAIGETRPDNGTLTLRDENGRKRAQIDVRDRQLVTQAWDADGKEERYEEAKLAKSLAANRELALIMNLFAVGIGIQ
Ga0257177_10515841	3300026480	Soil	EQAAPGGTIRQGPMVGFHPNGRRSFELNFVDGSPRGAVHAWYEGGQPSMTGETRPDNGTLVLWDERGRKRAQVDVRERQVVTRAWAEDGREERYEETKLAKAMPTNRNLGFIMQLWAVGIGIQ
Ga0257181_10388641	3300026499	Soil	HWCEQAAPGGTIRQGPMVGFHPNGRRSFELNFVDGSPRGAVHAWYEGGQPSMTGETRPDNGTLVLWDERGRKRAQVDVRERQVVTRAWAEDGREERYEETKLAKAMPTNRNLGFIMQLWAVGIGIQ
Ga0209981_10411152	3300027378	Arabidopsis Thaliana Rhizosphere	EVGKFQWCEQSAPGGMIRQGPMVGFHPNGRRSFELTFVDGTPRGSIRAWYEGGQPSMTGDTRPDNGTLILWDERGRRRAQIDVRERQVLTQAWDEQGREERYDEKKLARAFPNNRNLPFIMNLFAVGIGIQ
Ga0209854_10561381	3300027384	Groundwater Sand	QPSMTGETRPDNGTLVLWDERGRKRAQVDVRDRQVVTRAWDEEGREERYQEAKLAKAMPANRNLGFIMQLWAVGIGIQ
Ga0209854_10733501	3300027384	Groundwater Sand	LNFVEGTPQGTIRAWYESGELSASGETRPDNGTLTLWDERGRKRAQVDVRNRQVVTQAWDEQGRAERYEEAKLAKTLSANRDLPFVMNLFAVGIGIQ
Ga0209527_10912032	3300027583	Forest Soil	RRLELHFVDGTPRGPIRAWYESGQASAIGETRPDNGTLTLRDENGRKRAQIDVRDRQLVTQAWDASGKEERYEEAKLAKSLAANRELALIMNLFAVGIGIQ
Ga0209217_11198762	3300027651	Forest Soil	LRDKRKASAIGETRPDNGTLTLRDENGRKRAQIDVRDRQLVTHAWDANGKEERYEEAKLAKSLAANRELPFIMNLFAVGIGIQ
Ga0209592_13365122	3300027731	Freshwater Sediment	LHWCEEATPAGPIRQGPMVGFHPNGRRSFELNFVDGSPRGAVRAWYEGGQPSMTGETRPDNGTLVLWDERGRKRAQVDVRDRQVVTRAWDEEGREERYQEAKLAKAMPANRNLGFIMQLWAVGIGIQ
Ga0209074_105571312	3300027787	Agricultural Soil	RRRLEVYFVDGTPRGPIRAWYDNGQASAIGETRPDNGTLTLRDEAGRRRAQIDVRSRQVATQAWDAEGREEKYEEAKLAKTLAANRDLSFIMNIFAIGIGIQ
Ga0268264_123691471	3300028381	Switchgrass Rhizosphere	EAGKFHWCEQTSPGGPIRQGPMVGFHPNGRRSFELNFVDGSPRGSVRAWYEGGQPSMTGETRPDNGTLILWDERGRRRAQVDVRDRVVATRAWDEQGREERYQEAKLVKAMPANRNLGFLMQLWAVGIGIQ
Ga0137415_106754862	3300028536	Vadose Zone Soil	RQGPMVGFHPNGRRSFELNFVDGSPRGTVRAWYEGGQPSMTGETRPDNGTLVLWDLGGRKRAQVDVRDRQVVTRAWDEDGREQRYEEAKLAKAMPANRNLGFIMQLWAVGIGIQ
Ga0247819_107589872	3300028608	Soil	IYFVDGTPRGPIRAWYDSGQASAIGETRPDNGTLTLRDEAGRRRAQIDVRARQVVTQAWDADGREEKYEETKLAKTLAANRDLSFIMNIFAVGIGIQ
Ga0307504_102716481	3300028792	Soil	AGKFHWCEQTSPSGPIRQGPMVGFHPNGRRSFELNFVDGSPRGSVRAWYEGGQPSMTGETRPDNGTLILWDERGRRRAQVDVRDRVVATRAWDEEGREERYQEAKLVKAMPANRNLGFLMQLWAVGIGIQ
Ga0307312_103991272	3300028828	Soil	YPNGNRRLELHFVDGTPRGPIRAWYESGQASAIGETRPDNGTLTLRDENGRKRAQVDVRDRQLVTQAWDANGKEERYEEAKLAKSLAANRELALIMNLFAVGIGIQ
Ga0247826_103522292	3300030336	Soil	MVGFHPNGRRSFELNFVDGSPRGSVRAWYEGGQPSMTGETRPDNGTLILWDERGRRRAQVDVRDRVVATRAWDEEGREERYQEAKLVKAMPANRNLGFLMQLWAVGIGIQ
(restricted) Ga0255311_10517272	3300031150	Sandy Soil	ESENAGGKMKWCERSEPGGPIRHGPMVAFYPSGRRSFEIAFVDGTPRGPIRAWYDNGEISAIGETRPDNGTLTLRDERGRKRAQIDVLARQVVTQAWDADGRQERYEEAKLAKALVANRDLSFIMNVFAVGIGIQ
(restricted) Ga0255311_11350802	3300031150	Sandy Soil	ESEAGKFQWCEQAAPGGTIRQGPMVGFHPNGRRSFELSFVDGTPRGAVRAWYEGGQPSMTGETRPDNGTLVLWDERGRKRAQIDVRQRQIVTRAWDEQGREERYEEAKLAKAMPANRDLGFLMQLWAVGIGIQ
(restricted) Ga0255312_10128413	3300031248	Sandy Soil	CEQATPGGPIRQGPMVGFHPNGRRSFELNFVDGSPRGAVRAWYEGGQPSMTGETRPDNGTLVLWDERGRRRAQVDVRDRVVATRAWDEEGREERYQEAKLVKAMPANRNLGFLMQLWAVGIGIQ
(restricted) Ga0255312_10513141	3300031248	Sandy Soil	RPDNGTLTLRDERGRKRAQIDVRARQVVTQAWDADGREERYEEAKLAKALVANRDLSFIMNVFAVGIGIQ
Ga0307469_106365531	3300031720	Hardwood Forest Soil	GETRPDNGTLTLRDEQGRRRAQIDVRDRQLVTQAWDAEGREERYEEAKLAKSLAANRELPFIMNLFAVGIGIQ
Ga0307469_114023312	3300031720	Hardwood Forest Soil	RSLEVNFVDGTPRGPIRAWYESGEVSASGETRPDNGILTLRDERGRKRAQIDVRDRAIVAQAWDEQGREEPYEKAKLAQALPANRDLLFIMNLWAVGIGIP
Ga0307473_107333361	3300031820	Hardwood Forest Soil	IGETRPDNGTLTLRDENGRKRAQIDVRDRQVATQAWDADGKEERYEEAKLAKSLAANRELALIMNLFAVGIGIQ
Ga0310904_113084642	3300031854	Soil	PSGRRRIEIYFVDGTPRGPIRAWYDSGQASAIGETRPDNGTLTLRDEAGRRRAQIDVRARQVVTQAWDADGREEKYEETKLAKTLAANRDLSFIMNIFAVGIGIQ
Ga0310900_103271971	3300031908	Soil	MTGDTRPDNGTLILWDERGRRRAQIDVRERQVLTQAWDEQGREERYDEKKLARAFPNNRNLPFIMNLFAVGIGIQ
Ga0310884_102860741	3300031944	Soil	DSGQASAIGETRPDNGTLTLRDEAGRRRAQIDVRARQVVTQAWDADGREEKYEETKLAKTLAANRDLSFIMNIFAVGIGIQ
Ga0310895_103613181	3300032122	Soil	DGTPRGPIRAWYDSGQASAIGETRPDNGTLTLRDEAGRRRAQIDVRARQVVTQAWDADGREEKYEETKLAKTLAANRDLSFIMNIFAVGIGIQ
Ga0307471_1005293382	3300032180	Hardwood Forest Soil	IRAWYENGDLSASGETRPDNGTLTLWDERGRKRAQIDVLERQVVSQAWDEQGRAERYEEAKLAKTLSANRDLAFIMNLFAVGIGIQ
Ga0307471_1022704221	3300032180	Hardwood Forest Soil	TPTGKYEWCERPAPGTPVRHGPLVGFHPNGRRSLEVNFVDGTPRGPIRAWYESGEVSASGETRPDNGILTLRDERGRKRAQIEVRDRAIVAQAWDEQGREEPYEKAKLAQALPANRDLLFIMNLWAVGIGIP
Ga0310896_106248912	3300032211	Soil	CERSGSGGSIRHGPMLGSYPSGRRRIEIYFVDGTPRGPIRAWYDSGQASAIGETRPDNGTLTLRDEAGRRRAQIDVRARQVVTQAWDADGREEKYEETKLAKTLAANRDLSFIMNIFAVGIGIQ
Ga0214472_107288341	3300033407	Soil	TFVDGSPRGAVRAWYEGGQPSMTGDTRPDHGTLVLWDERGRKRAQVDVRARQVVTRAWDEEGREERYEEAKLAKAMPTNRNLVLIMQLWAVGIGIQ
Ga0326726_101547713	3300033433	Peat Soil	YDNGEISAIGETRPDNGTLTLRDERGRKRAQIDVRARQVVTQAWDADGREERYEEAKLAKALAANRDLSFIMNIFAVGIGIQ
Ga0326726_115619981	3300033433	Peat Soil	WCERSDPGGPIRHGPMVAFYPSGRRSFEIAFVDGTPRGPIRGWYDNGEISAIGETRPDNGTLTLRDERGRKRAQIDVRARQVVTQAWDADGREERYEEAKLAKVLAANRDLSFIMNIFAVGIGIQ
Ga0310811_100801226	3300033475	Soil	YDSGQASAIGETRPDNGTLTLRDEAGRRRAQIDVRARQVVTQAWDADGREEKYEETKLAKTLAANRDLSFIMNIFAVGIGIQ
Ga0326731_10650892	3300033502	Peat Soil	MVAFYPSGRRSFEVAFVDGTPRGPIRAWYDNGETSAIGETRPDNGTLTLRDERGRKRAQIDVRDRQVVTQAWDAEGREERYEEAKLAKALSANRNLSFIMNVFAVGIGIQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters