Metagenome Family F091818

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091818
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	66 residues
Representative Sequence	MTDEAEILFALIRARYAARLDAAQLEDLRKTVEGLVRDVATLRAAAIPDDAEPAQPFIPFRATP
Number of Associated Samples	87
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	36.45 %
% of genes near scaffold ends (potentially truncated)	22.43 %
% of genes from short scaffolds (< 2000 bps)	80.37 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.981 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (15.888 % of family members)
Environment Ontology (ENVO)	Unclassified (30.841 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.729 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.57% β-sheet: 0.00% Coil/Unstructured: 55.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01425	Amidase	55.14
PF00528	BPD_transp_1	10.28
PF00496	SBP_bac_5	8.41
PF01266	DAO	7.48
PF00773	RNB	2.80
PF01039	Carboxyl_trans	2.80
PF02771	Acyl-CoA_dh_N	0.93
PF02200	STE	0.93
PF07726	AAA_3	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	55.14
COG0557	Exoribonuclease R	Transcription [K]	2.80
COG0777	Acetyl-CoA carboxylase beta subunit	Lipid transport and metabolism [I]	2.80
COG0825	Acetyl-CoA carboxylase alpha subunit	Lipid transport and metabolism [I]	2.80
COG4776	Exoribonuclease II	Transcription [K]	2.80
COG4799	Acetyl-CoA carboxylase, carboxyltransferase component	Lipid transport and metabolism [I]	2.80
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.98 %
Unclassified	root	N/A	14.02 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.98 %
Unclassified	root	N/A	14.02 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.98 %
Unclassified	root	N/A	14.02 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	25.23 %
Unclassified	root	N/A	14.02 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	12.15 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	15.89 %
Unclassified	root	N/A	14.02 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	12.15 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4.67 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.87 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	14.95 %
Unclassified	root	N/A	14.02 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	12.15 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	1.87 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.87 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	14.95 %
Unclassified	root	N/A	14.02 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	12.15 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	1.87 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.87 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.93 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	14.95 %
Unclassified	root	N/A	14.02 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	12.15 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	1.87 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.87 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	14.95 %
Unclassified	root	N/A	14.02 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	12.15 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	1.87 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.87 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0765393	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300000955\|JGI1027J12803_101714080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	1170	Open in IMG/M
3300000956\|JGI10216J12902_102371610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	1702	Open in IMG/M
3300002908\|JGI25382J43887_10048484	Not Available	2308	Open in IMG/M
3300003203\|JGI25406J46586_10264668	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	507	Open in IMG/M
3300003267\|soilL1_10006652	All Organisms → cellular organisms → Bacteria	3117	Open in IMG/M
3300003319\|soilL2_10001635	All Organisms → cellular organisms → Bacteria	2043	Open in IMG/M
3300003998\|Ga0055472_10005170	All Organisms → cellular organisms → Bacteria	2266	Open in IMG/M
3300004013\|Ga0055465_10236828	Not Available	611	Open in IMG/M
3300004156\|Ga0062589_100675470	Not Available	912	Open in IMG/M
3300004267\|Ga0066396_10028660	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300004463\|Ga0063356_100447582	All Organisms → cellular organisms → Bacteria	1684	Open in IMG/M
3300004463\|Ga0063356_105654500	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300004480\|Ga0062592_102054662	Not Available	566	Open in IMG/M
3300004643\|Ga0062591_100741857	Not Available	895	Open in IMG/M
3300005184\|Ga0066671_10093051	All Organisms → cellular organisms → Bacteria	1654	Open in IMG/M
3300005332\|Ga0066388_100281012	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2307	Open in IMG/M
3300005332\|Ga0066388_103851880	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300005332\|Ga0066388_104367410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	720	Open in IMG/M
3300005332\|Ga0066388_106452751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	591	Open in IMG/M
3300005445\|Ga0070708_100442761	All Organisms → cellular organisms → Bacteria	1225	Open in IMG/M
3300005467\|Ga0070706_100936181	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300005529\|Ga0070741_10034951	All Organisms → cellular organisms → Bacteria	6768	Open in IMG/M
3300005566\|Ga0066693_10424656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	542	Open in IMG/M
3300005569\|Ga0066705_10167491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1359	Open in IMG/M
3300005713\|Ga0066905_100599687	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300005764\|Ga0066903_102895594	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	931	Open in IMG/M
3300006049\|Ga0075417_10036686	All Organisms → cellular organisms → Bacteria	2060	Open in IMG/M
3300006755\|Ga0079222_10964793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	727	Open in IMG/M
3300006844\|Ga0075428_100647928	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300006845\|Ga0075421_100043841	All Organisms → cellular organisms → Bacteria	5665	Open in IMG/M
3300006845\|Ga0075421_101169588	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	860	Open in IMG/M
3300006852\|Ga0075433_10112243	All Organisms → cellular organisms → Bacteria	2418	Open in IMG/M
3300006852\|Ga0075433_11034018	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300006853\|Ga0075420_100375176	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1231	Open in IMG/M
3300006876\|Ga0079217_10067551	All Organisms → cellular organisms → Bacteria	1500	Open in IMG/M
3300006876\|Ga0079217_11228320	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300006880\|Ga0075429_101288830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	637	Open in IMG/M
3300006894\|Ga0079215_10456819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	779	Open in IMG/M
3300006894\|Ga0079215_10781265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	662	Open in IMG/M
3300006904\|Ga0075424_101070212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	860	Open in IMG/M
3300006904\|Ga0075424_102687642	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300006918\|Ga0079216_10044330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1883	Open in IMG/M
3300007004\|Ga0079218_10680608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	960	Open in IMG/M
3300009100\|Ga0075418_10061228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4020	Open in IMG/M
3300009147\|Ga0114129_10008759	All Organisms → cellular organisms → Bacteria	14429	Open in IMG/M
3300009147\|Ga0114129_12348112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	639	Open in IMG/M
3300009162\|Ga0075423_11417692	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300009792\|Ga0126374_11274034	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300010046\|Ga0126384_12297063	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	521	Open in IMG/M
3300010358\|Ga0126370_10989536	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	767	Open in IMG/M
3300010359\|Ga0126376_10424879	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300010359\|Ga0126376_12601252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	555	Open in IMG/M
3300010360\|Ga0126372_10137350	All Organisms → cellular organisms → Bacteria	1926	Open in IMG/M
3300010360\|Ga0126372_10534830	Not Available	1109	Open in IMG/M
3300010362\|Ga0126377_13265751	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	524	Open in IMG/M
3300010400\|Ga0134122_12577270	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	559	Open in IMG/M
3300012203\|Ga0137399_10100253	All Organisms → cellular organisms → Bacteria	2238	Open in IMG/M
3300012685\|Ga0137397_10188871	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1531	Open in IMG/M
3300012685\|Ga0137397_11085413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	584	Open in IMG/M
3300012918\|Ga0137396_10082690	All Organisms → cellular organisms → Bacteria	2265	Open in IMG/M
3300012922\|Ga0137394_10127670	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2155	Open in IMG/M
3300012930\|Ga0137407_10303164	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1461	Open in IMG/M
3300012971\|Ga0126369_11170484	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	858	Open in IMG/M
3300014254\|Ga0075312_1100416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	601	Open in IMG/M
3300014265\|Ga0075314_1036850	Not Available	925	Open in IMG/M
3300014267\|Ga0075313_1011524	All Organisms → cellular organisms → Bacteria	1988	Open in IMG/M
3300014268\|Ga0075309_1002800	All Organisms → cellular organisms → Bacteria	3321	Open in IMG/M
3300014272\|Ga0075327_1299459	Not Available	535	Open in IMG/M
3300014302\|Ga0075310_1012042	All Organisms → cellular organisms → Bacteria	1540	Open in IMG/M
3300014310\|Ga0075331_1150024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	570	Open in IMG/M
3300015241\|Ga0137418_10201230	All Organisms → cellular organisms → Bacteria	1721	Open in IMG/M
3300018431\|Ga0066655_10254296	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300020202\|Ga0196964_10659617	Not Available	517	Open in IMG/M
3300025567\|Ga0210076_1105242	All Organisms → cellular organisms → Bacteria → Terrabacteria group	618	Open in IMG/M
3300025791\|Ga0210115_1047512	Not Available	919	Open in IMG/M
3300026029\|Ga0208002_1010148	Not Available	906	Open in IMG/M
3300026301\|Ga0209238_1022609	All Organisms → cellular organisms → Bacteria	2388	Open in IMG/M
3300026305\|Ga0209688_1098245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	542	Open in IMG/M
3300026530\|Ga0209807_1116505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1110	Open in IMG/M
3300026542\|Ga0209805_1049957	All Organisms → cellular organisms → Bacteria	2086	Open in IMG/M
3300026550\|Ga0209474_10330736	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300027637\|Ga0209818_1196813	Not Available	587	Open in IMG/M
3300027691\|Ga0209485_1162476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	675	Open in IMG/M
3300027765\|Ga0209073_10258505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	679	Open in IMG/M
3300027787\|Ga0209074_10396824	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300027873\|Ga0209814_10011475	Not Available	3491	Open in IMG/M
3300027886\|Ga0209486_10061930	All Organisms → cellular organisms → Bacteria	1901	Open in IMG/M
3300027886\|Ga0209486_10386204	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300027909\|Ga0209382_10169107	All Organisms → cellular organisms → Bacteria	2522	Open in IMG/M
3300027909\|Ga0209382_10215882	All Organisms → cellular organisms → Bacteria	2192	Open in IMG/M
3300028536\|Ga0137415_10171885	All Organisms → cellular organisms → Bacteria	1996	Open in IMG/M
3300031548\|Ga0307408_100087620	All Organisms → cellular organisms → Bacteria	2343	Open in IMG/M
3300031548\|Ga0307408_101060943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	750	Open in IMG/M
3300031548\|Ga0307408_101729528	All Organisms → cellular organisms → Bacteria → Terrabacteria group	596	Open in IMG/M
3300031740\|Ga0307468_100071185	All Organisms → cellular organisms → Bacteria	1932	Open in IMG/M
3300031820\|Ga0307473_10202880	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300031824\|Ga0307413_10644032	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300031824\|Ga0307413_12115140	Not Available	509	Open in IMG/M
3300031901\|Ga0307406_10363437	Not Available	1135	Open in IMG/M
3300031911\|Ga0307412_12031229	All Organisms → cellular organisms → Bacteria → Terrabacteria group	533	Open in IMG/M
3300031995\|Ga0307409_100594455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1093	Open in IMG/M
3300031995\|Ga0307409_101101151	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300032002\|Ga0307416_100251392	All Organisms → cellular organisms → Bacteria	1721	Open in IMG/M
3300032005\|Ga0307411_10976955	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300032126\|Ga0307415_101402085	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300032126\|Ga0307415_102014655	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.16%
Host-Associated	Host-Associated	30.84%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.42%
Plants	Host-Associated → Plants	30.84%
Aquatic	Environmental → Aquatic	3.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.04%
Marine	Environmental → Aquatic → Marine	3.74%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	28.04%
Loam	Environmental → Terrestrial → Soil → Loam	8.41%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.48%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.80%
Sand	Environmental → Terrestrial → Soil → Sand	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	28.04%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.76%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	16.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.15%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.54%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.87%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.93%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	15.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	12.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	12.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.41%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.48%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	7.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.54%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.80%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.93%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300014265	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D2	Environmental	Open in IMG/M
3300014267	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1	Environmental	Open in IMG/M
3300014268	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1	Environmental	Open in IMG/M
3300014272	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1	Environmental	Open in IMG/M
3300014302	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2	Environmental	Open in IMG/M
3300014310	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300020202	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10	Environmental	Open in IMG/M
3300025567	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025791	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026029	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_07653932	3300000033	Soil	MTEXADILFXLIRARYAARLDAGQLEELRKAVEGIVRDVATLRAATIPEDAEPGQPFTPFRAAP*
JGI1027J12803_1017140802	3300000955	Soil	VAAVDEAEILFALIRHRYANRLDAAQLDDLRKTVEGLVRDLAALRAVKMADDEEPAQPFIPYRADSYPQGGHK*
JGI10216J12902_1023716102	3300000956	Soil	VAAVDEAEILFALIRHRYADRLDAAQLDDLRKTVEGLVRDLAALRAVKMADDEEPAQPFIPYRADSYPQGGHK*
JGI25382J43887_100484842	3300002908	Grasslands Soil	MSTPPPVPEAEVLFALIRHRYAERLDAAQLEELRKTVEGLVRDLAVLRAVAIPDDAEPAQRFIPFRAD*
JGI25406J46586_102646681	3300003203	Tabebuia Heterophylla Rhizosphere	VAAVNEAEILFALIRERYGARLDAAQLDELRKTIEGLVRDIATLRAAEIPDDAEPAQPFIPFRANS*
soilL1_100066524	3300003267	Sugarcane Root And Bulk Soil	MTDEAEILFALIRARYAGRLDAAQLQDLQKTVEGLVRDVATLRAAAIPDDAEPGQPFIPFRATP*
soilL2_100016352	3300003319	Sugarcane Root And Bulk Soil	MTDEAEILFALIRARYAARLDAEQLEELRKTVEGIVRDVTTLRAATIPEDAEPGQPFIPFRAAK*
Ga0055472_100051703	3300003998	Natural And Restored Wetlands	VTDEADEAEILFALIRARYGARLDPAQLADVRATVAGIVRDVAALRAAAIPDGAEPAQPFIPYRSDA*
Ga0055465_102368282	3300004013	Natural And Restored Wetlands	RGLRCGAVTDEADEAEILFALIRARYGARLDPAQLADVRATVTGIVRDVAALRAAAIPDGAESAQPFVPYRSDA*
Ga0062589_1006754701	3300004156	Soil	MTEEADILFELIRARYAARLDAGQLEELRKAVEGIVRDVATLRAATIPEDAEPGQPFTPFRAVP*
Ga0066396_100286602	3300004267	Tropical Forest Soil	VAAVDEAEILFALIRQRYADRLDAAQLDDLRKTVEGLVRDLAALRAVKMADDEEPAQPFIPYRADP*
Ga0063356_1004475822	3300004463	Arabidopsis Thaliana Rhizosphere	MTDEADIVFALIRARYAARLDAGQLEELRETVEGIVGDVATLRAATIPEDAEPGQPFIPFRAAP*
Ga0063356_1056545002	3300004463	Arabidopsis Thaliana Rhizosphere	MTDEAEILFALIRARYAARLDAAQLEDLRKTVEGLVRDVATLRAAAIPDDAEPAQPFIPFRATP*
Ga0062592_1020546621	3300004480	Soil	MTEEADILFALIRARYAARLDAGQLEELRKAVEGIVRDVATLRAATIPEDAEPGQPFTPFRAVP*
Ga0062591_1007418572	3300004643	Soil	MTEEADILFELIRARYAARLDAGQLEELRKAVEGIVRDVATLRAATIPEDAEPGQPFTPFRA
Ga0066671_100930512	3300005184	Soil	MSGPPEAEILFALIRERYAARLDAAQLEELRKTVEGIVRDLAALRAVAIPEDAEPAQPFTPFRANA*
Ga0066388_1002810123	3300005332	Tropical Forest Soil	VAAVDEAEILFALIRHRYADRLDAAQLDDLRKTVEGLVRDLAALRAVKMADDEEPAQPFIPYRADP*
Ga0066388_1038518802	3300005332	Tropical Forest Soil	VAAVDEAEILFALIRHRYADRLDPAQLDELRKTVEGLVRDLAALRAVTMADDEEPAQPFIPYRADP*
Ga0066388_1043674102	3300005332	Tropical Forest Soil	RAHAGVATVSEAEILFGLIRQRYADRLDAAQLEELRKTVDGLVRDLAALRAAEIADDAEPAQPFIPFRADE*
Ga0066388_1064527512	3300005332	Tropical Forest Soil	RAHAGVATVSEAEILFGLIRQRYADRLDAAQLEELRKTVDGLVRDLGALRAADIPDDAEPAQPFIPFRADE*
Ga0070708_1004427612	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSGTPEAELLFALIRERYASRLDAAQLEELRKTVEGIVRDLAALRAVAIPDDAEPGQPFIAFRADA*
Ga0070706_1009361812	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSGTPEAEILFALIRERYASRLDAVQLEELRKTVEGIVRDLAALRAVAIPDDAEPGQPFIAFRADA*
Ga0070741_100349516	3300005529	Surface Soil	MTSEAEILFALIRSRYGSRLDAAQLEELRTVVDGLVRDVAVLRAAVIPDDAEPAQGFTPYRSDS*
Ga0066693_104246561	3300005566	Soil	ILFALIRERYAARLDAAQLEELRKTVEGIVRDLAALRAVAIPDDAEPAQPFIPFRADA*
Ga0066705_101674912	3300005569	Soil	MSGPPEAEILFALIRERYAARLDAAQLEELRKTVEGIVRDLAALRAVAIPDDAEPAQPFIPFRADA*
Ga0066905_1005996872	3300005713	Tropical Forest Soil	MSTTAPISEAEILFALIRQRYADRLDAAQLDDLRKTVEGLVRDLAALRAVKMADDEEPAQPFIPYRADPPPQGEPK*
Ga0066903_1028955942	3300005764	Tropical Forest Soil	VAAVDEAEILFALIRHRYADRLDATQLDDLRKTVEGLVRDLTALRAVTMADDEEPAQPFI
Ga0075417_100366861	3300006049	Populus Rhizosphere	MSSIASVPEAEILFELIRLRYADRLNAEQLDELRKTVEGLVRDLAALRAAEIPDDAEPAQPFIPFRADR*
Ga0079222_109647932	3300006755	Agricultural Soil	SRSAAGPTMSTAPVPEAEILFALIRHRYADRLDAAQLEDVRKTVEGLIRDLAALRAATIPDDVEPAQPFIPFRADS*
Ga0075428_1006479282	3300006844	Populus Rhizosphere	MTDEAEILFALIRARYGARLDEAQREDVKKVVEAIVRDVTTLRAFVLPDDAEPGQPFVPYRAES*
Ga0075421_1000438412	3300006845	Populus Rhizosphere	MTDEADILFALIRARYAARLDAAQLEELRKTVEGIVRDVATLRAASIPDDAEPGQPFVPFRAAS*
Ga0075421_1011695882	3300006845	Populus Rhizosphere	VAAVDEAEILFALIRHRYADRLDAAQLDDLRKTVEGLVRDLAALRAVKMADDQEPAQPFIPYRADS*
Ga0075433_101122434	3300006852	Populus Rhizosphere	MSSIASVPEAEILFELIRLRYADRLKAEQLDELRKTVEGLVRDLAALRAAEIPDDAEPAQPFIPFRADR*
Ga0075433_110340182	3300006852	Populus Rhizosphere	MPSIPGYDEDDMTDEAEILFALIRARYAARLDPAQLEDLRKTVEGLVRDVATLRAATIPDDAEPAQSFIPFRATP*
Ga0075420_1003751761	3300006853	Populus Rhizosphere	VAAVDEAEILFALIRHRYADRLDAAQLEELRKTVDGLVRDLAALRAVTMADDEEPAQPFIPY
Ga0079217_100675512	3300006876	Agricultural Soil	MTDEADILFALIRARYAARLDAVQLEELHKTVEGIVRDVAALRAASIPDDAEPGQPFMPFRAAS*
Ga0079217_112283202	3300006876	Agricultural Soil	VTDEAEILFALIRARYGARLDPAQLEDVRATVAGIVRDVAALRAAAIPDGAEPAQPFVPYRSDA*
Ga0075429_1012888302	3300006880	Populus Rhizosphere	EDDMTDEAEILFALIRARYAARLDPAQLEDLRKTVEGLVRDVATLRAATIPDDAEPAQSFIPFRATP*
Ga0079215_104568192	3300006894	Agricultural Soil	MTDESDILFALIRARYAARLDTAQIEDLRKTVDGIVRDVAALRAAAIPDDAEPGQPFVPFRAVP*
Ga0079215_107812651	3300006894	Agricultural Soil	RPRPPLAMRTPMTDEAEILFALIRARYATRLDAAQLEELRKTVEGLVRDVATLRAAAIPDDAEPGQPFVPFRAAP*
Ga0075424_1010702122	3300006904	Populus Rhizosphere	VAAVTEAEILFALIRERYGARLHAAQLDDLRKTVEGLVRDLAALRAAEIPDDAEPAQPFIPFRADR*
Ga0075424_1026876421	3300006904	Populus Rhizosphere	RVQGGMEAGSRSAAGPTMSTPPVPEAEILFALIHHRYADRLDAAQLDELRKTVEGLIRDLAALRAAAIPDDVEPAQPFIPFRADS*
Ga0079216_100443302	3300006918	Agricultural Soil	MTDEVDILFALIRARYAARLDAVQLEELQKTVEGIVRDVAALRAASIPDDAEPGQPFMPFRAAS*
Ga0079218_106806082	3300007004	Agricultural Soil	MTHDAQILFALVSQRYGARLDAAQLEDVKRIVEALVRDAAALRAASIPDDAEPGQPFIPFRADP*
Ga0075418_100612282	3300009100	Populus Rhizosphere	MRSTPACDEETMTDEAEILFALIRARYGARLDEAQREDVKKVVEAIVRDVTILRAFVLPDDAEPGQPFVPYRAES*
Ga0114129_1000875911	3300009147	Populus Rhizosphere	VAAVDEAEILFALIRHRYADRLDAAQLDDLRKTVEGLVRDLAALRAVNMADDQEPAQPFIPYRADS*
Ga0114129_123481122	3300009147	Populus Rhizosphere	YAARLDAGQLEELRKAVEGIVRDVATLRAATIPEDAEPGQPFTPFRAVP*
Ga0075423_114176922	3300009162	Populus Rhizosphere	MRSTPACDEETMTDEAEILFALIRARYGARLDEAQREDVKKVVEAIVRDVTTLRAFVLPDDAEPGQPFVPYRAES*
Ga0126374_112740342	3300009792	Tropical Forest Soil	VAAVDEAEILFGLIRQRYADRLDAAQLEELRKTVDGLVRDLAALRAVKIADDEEPAQPFIPYRADP*
Ga0126384_122970632	3300010046	Tropical Forest Soil	VAAVDEAEILFALIRQRYADRLDAAQLDDLRKTVEGLVRDLAALRAVTMAEDEEPAQPFIPYRADP*
Ga0126370_109895362	3300010358	Tropical Forest Soil	VAAVDEAEILFALIRHRYADRLDAAQLDDLRKTVEGLVRDLAALRAVKMADDAEPAQPFIPYRADP*
Ga0126376_104248792	3300010359	Tropical Forest Soil	VAAVDEAEILFALIRHRYADRLDAAQLDDLRKIVGGLVRDLAALRAVKMADDEEPAQPFIPYRADPPPQGEPK*
Ga0126376_126012521	3300010359	Tropical Forest Soil	LIRHRYADRLDAAQLDDLRKTVEGLVRDLAALRAVKMADDAEPAQPFIPYRADP*
Ga0126372_101373503	3300010360	Tropical Forest Soil	ALIRHRYADRLDAAQLDDLRKTVEGLVRDLAALRAVKMADDAEPAQPFIPYRADP*
Ga0126372_105348301	3300010360	Tropical Forest Soil	ALIRHRYADRLDAAQLDDLRKTVEGLVRDLAALRAVKMADDEEPAQPFIPYRADP*
Ga0126377_132657512	3300010362	Tropical Forest Soil	VAAVDEAEILFALMRHRYADRLDAAQLDDLRKTVEGLVRDLAALRAVKMADDEEPAQPFIPYRADP*
Ga0134122_125772702	3300010400	Terrestrial Soil	VAAVDEAEILFALIRQRYADRLDAAQLEEVRKIVEGLVRDLAALRAAEIPDDAEPAQPFIPYRADRYPQGGHT*
Ga0137399_101002532	3300012203	Vadose Zone Soil	VNGTPEAEILFALIRERYASRLDAAQLEELRTTVEGIVRDLAALRAVAIPDDAEPAQPFIPFRADA*
Ga0137397_101888712	3300012685	Vadose Zone Soil	MSTPPCVPEAEILFALIRHRYADRLNAEQLAELQKTVEGLVRDLAALRAVAIPDDAEPAQPFIPFRAD*
Ga0137397_110854132	3300012685	Vadose Zone Soil	PMSGTPEAEILFALIRERYASRLDAAQLEELRTTVEGIVRDLAALRAVAIPDDAEPAQPFIPFRADA*
Ga0137396_100826903	3300012918	Vadose Zone Soil	MSGTPEAEILFALIRERYASRLDAAQLEELRTTVEGIVRDLAALRAVAIPDDAEPAQPFIPFRADA*
Ga0137394_101276704	3300012922	Vadose Zone Soil	MSTPPCVPEAEILFALIRHRYADRLNAEQLAELQKIVEGLVRDLAALRAVAIPDDAEPAQPFIPFRA
Ga0137407_103031643	3300012930	Vadose Zone Soil	MSTPPCVPEAEILFALIRHRYADRLNAEQLAELQKTVEGLVRDLGALRAVAIPDDAEPAQPFIPFRAD*
Ga0126369_111704842	3300012971	Tropical Forest Soil	VAAVDEAEILFALIRHRYADRLDAAQLDDLRKTVEGLVRDLTALRAVTMADDEEPAQPFIPYRADP*
Ga0075312_11004162	3300014254	Natural And Restored Wetlands	VTDEAEILFALIRARYGARLDPAQLEDVRATVAGIVRDVAALRAASIPDGAEPAQPFVPYRSDA*
Ga0075314_10368502	3300014265	Natural And Restored Wetlands	VTDEAELLFALIRGRDGARLDPAQLEDVRATVAGIVRDVTALRAAAIPDGAESAQPFVPYRSDA*
Ga0075313_10115242	3300014267	Natural And Restored Wetlands	VTDEADEAEILFALIRARYGARLDPAQLADVRATVAGIVRDVAALRAAAIPDGAEPAQPFVPYRSDA*
Ga0075309_10028004	3300014268	Natural And Restored Wetlands	VTDEAEILFALIRARYGARLDPAQLADVRATVAGIVRDVAALRAAAIPDGAEPAQPFIPYRSDA*
Ga0075327_12994592	3300014272	Natural And Restored Wetlands	VVYDVGAVSDEAEILFTLIRARYGARLDAAQREEVRRAVDGIVRDVAALRAAAIPDDAEPAQPFRPYRAEA*
Ga0075310_10120422	3300014302	Natural And Restored Wetlands	VTDEAEILFALIRARYGARLDPAQLEDVRATVAGIVRDVAALRAAAIPDGAEPAQPFIPYRSDA*
Ga0075331_11500242	3300014310	Natural And Restored Wetlands	VTDEADEAEILFALIRARYGARLDPAQLADVRATVAGIVRDVTALRAAAIPDGAESAQPFVPYRSDA*
Ga0137418_102012302	3300015241	Vadose Zone Soil	MSGTPEAEILFALIRERYASRLDAAQLEELRTTVEGMVRDLAALRAVAIPDDVEPAQPFIPFRADA*
Ga0066655_102542962	3300018431	Grasslands Soil	MSGPPEAEILFALIRERYAARLDAAQLEELRKTVEGIVRDLAALRAVAIPDDAEPAQPFTPFRANA
Ga0196964_106596172	3300020202	Soil	MTDEADILFALIRARYAARLDAAQLEELRKTVEGIVRDVATLRTATIPADVEPAQPFIPFRAGP
Ga0210076_11052422	3300025567	Natural And Restored Wetlands	RGLRCGAVTDEADEAEILFALIRARYGARLDPAQLADVRATVTGIVRDVAALRAAAIPDGAESAQPFVPYRSDA
Ga0210115_10475121	3300025791	Natural And Restored Wetlands	VTDEADEAEILFALIRARYGARLDPAQLADVRATVAGIVRDVAALRAAAIPDGAEPAQPFIPYRSDA
Ga0208002_10101482	3300026029	Natural And Restored Wetlands	VTDEADEAEILFALIRARYGARLDPAQLADVRATVAGIVRDVAALRAAAIPDGAEPAQPFVPYRSDA
Ga0209238_10226092	3300026301	Grasslands Soil	MSGPPEAEILFALIRERYAARLDAAQLEELRKTVEGIVRDLAALRAVAIPDDAEPAQPFSPFRADA
Ga0209688_10982451	3300026305	Soil	ILFALIRERYAARLDAAQLEELRKTVEGIVRDLAALRAVAIPDDAEPAQPFIPFRADA
Ga0209807_11165052	3300026530	Soil	MSGPPEAEILFALIRERYAARLDAAQLEELRKTVEGIVRDLAALRAVAIPDDAEPAQPFIPFRADA
Ga0209805_10499573	3300026542	Soil	MTGPPEAEILYAARLDAAQLEELRKTVEGIVRDLAALRAVAIPDDAEPAQPFIPFRANA
Ga0209474_103307362	3300026550	Soil	MSGPPEAEILFALIRERYAARLDAAQLEELRKTVEGIVRDLAALRAVAIPEDAEPAQPFTPFRANA
Ga0209818_11968132	3300027637	Agricultural Soil	VTDEAEILFALIRARYGARLDPAQLEDVRATVAGIVRDVAALRAAAIPDGAEPAQPFVPYRSDA
Ga0209485_11624761	3300027691	Agricultural Soil	ADILFALIRARYAARLDAVQLEELQKTVEGIVRDVAALRAASIPDDAEPGQPFMPFRAAS
Ga0209073_102585051	3300027765	Agricultural Soil	MSTAPVPEAEILFALIRHRYADRLDAAQLEDVRKTVEGLIRDLAALRAATIPDDVEPAQPFMPFRADS
Ga0209074_103968242	3300027787	Agricultural Soil	RGLEAGSRSAAGPTMSTAPVPEAEILFALIRHRYADRLDAAQLEDVRKTVEGLIRDLAALRAATIPDDVEPAQPFIPFRADS
Ga0209814_100114753	3300027873	Populus Rhizosphere	MSSIASVPEAEILFELIRLRYADRLNAEQLDELRKTVEGLVRDLAALRAAEIPDDAEPAQPFIPFRADR
Ga0209486_100619302	3300027886	Agricultural Soil	MTDEADILFALIRARYAARLDAVQLEELHKTVEGIVRDVAALRAASIPDDAEPGQPFMPFRAAS
Ga0209486_103862042	3300027886	Agricultural Soil	MTDETDILFALIRARYAARLDATQLEELRKIVEGIVRDVATLRAASIPDDAEPGQPFVPFRAAS
Ga0209382_101691072	3300027909	Populus Rhizosphere	MTDEAEILFALIRARYGARLDEAQREDVKKVVEAIVRDVTILRAFVLPDDVEPGQPFVPYRAES
Ga0209382_102158822	3300027909	Populus Rhizosphere	MTDEADILFALIRARYAARLDAAQLEELRKTVEGIVRDVATLRAASIPDDAEPGQPFVPFRAAS
Ga0137415_101718852	3300028536	Vadose Zone Soil	MSGTPEAEILFALIRERYASRLDAAQLEELRTTVEGIVRDLAALRAVAIPDDAEPAQPFIPFRADA
Ga0307408_1000876203	3300031548	Rhizosphere	MTDEAEILFALIRARYAARLDAAQLEDLRKTVEGMVRDVAALRAATIPEDAEPGQPFSPFRAAP
Ga0307408_1010609432	3300031548	Rhizosphere	RMTDEADILFALIRARYAARLDAAQLEELRKTVEGIVRDVATLRAASIPDDAEPGQPFMPFRAAS
Ga0307408_1017295282	3300031548	Rhizosphere	MTDEAEILFTLIRTRYAARLDAAQLDELRTTVEGMVRDVAAIRAATIPEDAEPGQAFVAFRAAP
Ga0307468_1000711852	3300031740	Hardwood Forest Soil	MTDEAEILFALIRARYAARLDAAQLEELRKTVDGLVRDVATLRAATIPDDAEPGQPFVPFRAAP
Ga0307473_102028802	3300031820	Hardwood Forest Soil	MSGTPEAEILFALIRERYASRLDAAQLEELRKTVEGIVRDLAALRAVAIPDDAEPGQPFIAFRADA
Ga0307413_106440322	3300031824	Rhizosphere	MTDEAEILFTLIRARYAARLDAAQLDELRTTVEGMVRDVAAIRAATIPEDAEPGQAFVAFRAAP
Ga0307413_121151402	3300031824	Rhizosphere	VTDEAEILFALIRARYGARLDPAQLEDARATVAGIVRDVAALRAASIPDGAEPAQPFVPYRSDA
Ga0307406_103634371	3300031901	Rhizosphere	IRTRYAARLDAAQLDELRTTVEGMVRDVAAIRAATIPEDAEPGQAFVAFRAAP
Ga0307412_120312291	3300031911	Rhizosphere	MTDEAEILFALIRARYAARLDAAQLEDLRKTVEGLVRDVATLRAAAIPDDAEP
Ga0307409_1005944552	3300031995	Rhizosphere	MTDEAEILFALIRARYVTRLDAAQLEDLRKTVEGIVRDVATLRAAAIPDDAEPGQPFIPFRAAP
Ga0307409_1011011512	3300031995	Rhizosphere	VTDEAEILFALIRARYGARLDPAQLADVRATVAGIVRDVAALRAAAIPDGAEPAQPFVPYRSDA
Ga0307416_1002513922	3300032002	Rhizosphere	MSDEAEILFALIRARYATRLDAAQLEDLRKTVEGIVRDVATLRAATIPDDAEPGQPFIPFRAAP
Ga0307411_109769552	3300032005	Rhizosphere	MTDEAEILFALIRARYAERLDAAQLEDLRKTVEGIVRDVATLRAATLPDDAEPGQPFVPFRAAP
Ga0307415_1014020852	3300032126	Rhizosphere	MTDEVEILFALIRARYAERLDAAQLEDLRKTVEGIVRDVATLRAAAIPDDAEPGQPFIPFRAAP
Ga0307415_1020146552	3300032126	Rhizosphere	MRTVPETMTDEAEILFALIRARYGARLDAAQLEDVKKTVEGLVRDVMALRAAPIPDDAEPAQPFIPFRAES

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F091818

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences