Metagenome / Metatranscriptome Family F091779

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091779
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	66 residues
Representative Sequence	LEPVDKDETFSWKAATVIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSILFARTKRSS
Number of Associated Samples	82
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	22.64 %
% of genes near scaffold ends (potentially truncated)	14.95 %
% of genes from short scaffolds (< 2000 bps)	64.49 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Archaea (92.523 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil (29.907 % of family members)
Environment Ontology (ENVO)	Unclassified (60.748 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.355 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.57% β-sheet: 0.00% Coil/Unstructured: 40.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00583	Acetyltransf_1	35.51
PF01192	RNA_pol_Rpb6	30.84
PF00118	Cpn60_TCP1	10.28
PF02737	3HCDH_N	3.74
PF04471	Mrr_cat	2.80
PF00589	Phage_integrase	1.87
PF03297	Ribosomal_S25	0.93
PF00958	GMP_synt_C	0.93
PF00004	AAA	0.93
PF01171	ATP_bind_3	0.93
PF04126	Cyclophil_like	0.93
PF05362	Lon_C	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1758	DNA-directed RNA polymerase, subunit K/omega	Transcription [K]	30.84
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	10.28
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	3.74
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	3.74
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	3.74
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	3.74
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	3.74
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	3.74
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	3.74
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	1.87
COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	0.93
COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain	Translation, ribosomal structure and biogenesis [J]	0.93
COG1067	Predicted ATP-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG0466	ATP-dependent Lon protease, bacterial type	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1606	ATP-utilizing enzyme, PP-loop superfamily	General function prediction only [R]	0.93
COG0301	Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	0.93
COG1750	Predicted archaeal serine protease, S18 family	General function prediction only [R]	0.93
COG0037	tRNA(Ile)-lysidine synthase TilS/MesJ	Translation, ribosomal structure and biogenesis [J]	0.93
COG3480	Predicted secreted protein YlbL, contains PDZ domain	Signal transduction mechanisms [T]	0.93
COG4901	Ribosomal protein S25e	Translation, ribosomal structure and biogenesis [J]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.52 %
Unclassified	root	N/A	7.48 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.52 %
Unclassified	root	N/A	7.48 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	92.52 %
Unclassified	root	N/A	7.48 %

Name	Rank	Taxonomy	Distribution
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	22.43 %
Unclassified	root	N/A	7.48 %

Name	Rank	Taxonomy	Distribution
Crenarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota	7.48 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	7.48 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	7.48 %
Unclassified	root	N/A	7.48 %

Name	Rank	Taxonomy	Distribution
Thermoprotei	class	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	7.48 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	7.48 %
Unclassified	root	N/A	7.48 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	5.61 %

Name	Rank	Taxonomy	Distribution
Thermoprotei	class	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	7.48 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	7.48 %
Unclassified	root	N/A	7.48 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	5.61 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002557\|JGI25381J37097_1004829	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2354	Open in IMG/M
3300002558\|JGI25385J37094_10019604	All Organisms → cellular organisms → Archaea	2416	Open in IMG/M
3300002558\|JGI25385J37094_10037158	All Organisms → cellular organisms → Archaea	1691	Open in IMG/M
3300002558\|JGI25385J37094_10134624	Not Available	680	Open in IMG/M
3300002560\|JGI25383J37093_10031017	All Organisms → cellular organisms → Archaea	1788	Open in IMG/M
3300002561\|JGI25384J37096_10079317	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	1190	Open in IMG/M
3300002562\|JGI25382J37095_10185727	Not Available	637	Open in IMG/M
3300002562\|JGI25382J37095_10195042	All Organisms → cellular organisms → Archaea	615	Open in IMG/M
3300002908\|JGI25382J43887_10000605	All Organisms → cellular organisms → Archaea	12619	Open in IMG/M
3300002908\|JGI25382J43887_10000937	All Organisms → cellular organisms → Archaea	11048	Open in IMG/M
3300002908\|JGI25382J43887_10243744	All Organisms → cellular organisms → Archaea	831	Open in IMG/M
3300002908\|JGI25382J43887_10294996	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	714	Open in IMG/M
3300002909\|JGI25388J43891_1003474	All Organisms → cellular organisms → Archaea	3242	Open in IMG/M
3300002911\|JGI25390J43892_10023249	All Organisms → cellular organisms → Archaea	1493	Open in IMG/M
3300002911\|JGI25390J43892_10089332	All Organisms → cellular organisms → Archaea	691	Open in IMG/M
3300002911\|JGI25390J43892_10172257	All Organisms → cellular organisms → Archaea	508	Open in IMG/M
3300002916\|JGI25389J43894_1023177	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	1075	Open in IMG/M
3300005166\|Ga0066674_10257892	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	825	Open in IMG/M
3300005174\|Ga0066680_10678479	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	635	Open in IMG/M
3300005178\|Ga0066688_10867014	All Organisms → cellular organisms → Archaea	559	Open in IMG/M
3300005181\|Ga0066678_10832823	Not Available	608	Open in IMG/M
3300005468\|Ga0070707_100077557	All Organisms → cellular organisms → Archaea	3206	Open in IMG/M
3300005536\|Ga0070697_100025561	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	4710	Open in IMG/M
3300005552\|Ga0066701_10187433	All Organisms → cellular organisms → Archaea	1263	Open in IMG/M
3300005552\|Ga0066701_10293830	All Organisms → cellular organisms → Archaea	1007	Open in IMG/M
3300005552\|Ga0066701_10594798	All Organisms → cellular organisms → Archaea	674	Open in IMG/M
3300005552\|Ga0066701_10610218	All Organisms → cellular organisms → Archaea	663	Open in IMG/M
3300005553\|Ga0066695_10849763	All Organisms → cellular organisms → Archaea	523	Open in IMG/M
3300005554\|Ga0066661_10001816	All Organisms → cellular organisms → Archaea	8791	Open in IMG/M
3300005555\|Ga0066692_10003351	All Organisms → cellular organisms → Archaea	6749	Open in IMG/M
3300005574\|Ga0066694_10004700	All Organisms → cellular organisms → Archaea	5521	Open in IMG/M
3300005598\|Ga0066706_11286595	All Organisms → cellular organisms → Archaea	553	Open in IMG/M
3300006791\|Ga0066653_10063766	All Organisms → cellular organisms → Archaea	1574	Open in IMG/M
3300006797\|Ga0066659_11724551	All Organisms → cellular organisms → Archaea	529	Open in IMG/M
3300006804\|Ga0079221_10209728	All Organisms → cellular organisms → Archaea	1075	Open in IMG/M
3300006806\|Ga0079220_10616981	All Organisms → cellular organisms → Archaea	775	Open in IMG/M
3300007255\|Ga0099791_10187814	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	972	Open in IMG/M
3300007258\|Ga0099793_10028406	All Organisms → cellular organisms → Archaea	2356	Open in IMG/M
3300007258\|Ga0099793_10109441	All Organisms → cellular organisms → Archaea	1284	Open in IMG/M
3300009038\|Ga0099829_10007921	All Organisms → cellular organisms → Archaea	6694	Open in IMG/M
3300009090\|Ga0099827_10827656	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	801	Open in IMG/M
3300009090\|Ga0099827_11883245	All Organisms → cellular organisms → Archaea	521	Open in IMG/M
3300009137\|Ga0066709_104096545	All Organisms → cellular organisms → Archaea	530	Open in IMG/M
3300010099\|Ga0127450_1088888	All Organisms → cellular organisms → Archaea	1623	Open in IMG/M
3300010134\|Ga0127484_1140800	All Organisms → cellular organisms → Archaea	1027	Open in IMG/M
3300010321\|Ga0134067_10064531	Not Available	1202	Open in IMG/M
3300010333\|Ga0134080_10012589	All Organisms → cellular organisms → Archaea	3036	Open in IMG/M
3300010335\|Ga0134063_10462508	Not Available	630	Open in IMG/M
3300010336\|Ga0134071_10027381	All Organisms → cellular organisms → Archaea	2464	Open in IMG/M
3300011269\|Ga0137392_10627885	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	891	Open in IMG/M
3300012096\|Ga0137389_11126411	All Organisms → cellular organisms → Archaea	672	Open in IMG/M
3300012198\|Ga0137364_10083031	All Organisms → cellular organisms → Archaea	2220	Open in IMG/M
3300012199\|Ga0137383_11364648	All Organisms → cellular organisms → Archaea	503	Open in IMG/M
3300012201\|Ga0137365_10747675	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	714	Open in IMG/M
3300012206\|Ga0137380_10157037	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2074	Open in IMG/M
3300012206\|Ga0137380_11611874	All Organisms → cellular organisms → Archaea	533	Open in IMG/M
3300012209\|Ga0137379_10723013	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	901	Open in IMG/M
3300012209\|Ga0137379_11208405	All Organisms → cellular organisms → Archaea	663	Open in IMG/M
3300012351\|Ga0137386_11022506	All Organisms → cellular organisms → Archaea	587	Open in IMG/M
3300012355\|Ga0137369_10840300	All Organisms → cellular organisms → Archaea	622	Open in IMG/M
3300012357\|Ga0137384_10052649	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	3370	Open in IMG/M
3300012359\|Ga0137385_10005707	All Organisms → cellular organisms → Archaea	10946	Open in IMG/M
3300012362\|Ga0137361_10482919	All Organisms → cellular organisms → Archaea	1138	Open in IMG/M
3300012373\|Ga0134042_1039722	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	724	Open in IMG/M
3300012400\|Ga0134048_1072862	All Organisms → cellular organisms → Archaea	2077	Open in IMG/M
3300012402\|Ga0134059_1382767	All Organisms → cellular organisms → Archaea	537	Open in IMG/M
3300012918\|Ga0137396_10019501	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	4324	Open in IMG/M
3300012972\|Ga0134077_10094203	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1153	Open in IMG/M
3300012976\|Ga0134076_10041587	All Organisms → cellular organisms → Archaea	1711	Open in IMG/M
3300012977\|Ga0134087_10403884	All Organisms → cellular organisms → Archaea	666	Open in IMG/M
3300018433\|Ga0066667_10022860	All Organisms → cellular organisms → Archaea	3368	Open in IMG/M
3300018433\|Ga0066667_11198253	All Organisms → cellular organisms → Archaea	660	Open in IMG/M
3300018468\|Ga0066662_10446903	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	1156	Open in IMG/M
3300018468\|Ga0066662_10553863	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	1063	Open in IMG/M
3300021046\|Ga0215015_10580022	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1224	Open in IMG/M
3300021046\|Ga0215015_11044892	All Organisms → cellular organisms → Archaea	1276	Open in IMG/M
3300021086\|Ga0179596_10455030	Not Available	648	Open in IMG/M
3300021088\|Ga0210404_10428089	Not Available	742	Open in IMG/M
3300026277\|Ga0209350_1000611	All Organisms → cellular organisms → Archaea	18808	Open in IMG/M
3300026295\|Ga0209234_1238791	All Organisms → cellular organisms → Archaea	595	Open in IMG/M
3300026296\|Ga0209235_1000201	All Organisms → cellular organisms → Archaea	28583	Open in IMG/M
3300026296\|Ga0209235_1082757	All Organisms → cellular organisms → Archaea	1427	Open in IMG/M
3300026298\|Ga0209236_1001737	All Organisms → cellular organisms → Archaea	13222	Open in IMG/M
3300026298\|Ga0209236_1045485	All Organisms → cellular organisms → Archaea	2227	Open in IMG/M
3300026309\|Ga0209055_1059145	All Organisms → cellular organisms → Archaea	1626	Open in IMG/M
3300026310\|Ga0209239_1028004	All Organisms → cellular organisms → Archaea	2705	Open in IMG/M
3300026313\|Ga0209761_1008848	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	6568	Open in IMG/M
3300026313\|Ga0209761_1328216	All Organisms → cellular organisms → Archaea	521	Open in IMG/M
3300026317\|Ga0209154_1013349	All Organisms → cellular organisms → Archaea	3955	Open in IMG/M
3300026317\|Ga0209154_1292267	All Organisms → cellular organisms → Archaea	539	Open in IMG/M
3300026325\|Ga0209152_10120851	All Organisms → cellular organisms → Archaea	996	Open in IMG/M
3300026332\|Ga0209803_1027033	All Organisms → cellular organisms → Archaea	2762	Open in IMG/M
3300026499\|Ga0257181_1094959	All Organisms → cellular organisms → Archaea	524	Open in IMG/M
3300026524\|Ga0209690_1001606	All Organisms → cellular organisms → Archaea	12793	Open in IMG/M
3300026551\|Ga0209648_10013498	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	7137	Open in IMG/M
3300027643\|Ga0209076_1000902	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	5694	Open in IMG/M
3300027643\|Ga0209076_1017796	All Organisms → cellular organisms → Archaea	1909	Open in IMG/M
3300027655\|Ga0209388_1216033	All Organisms → cellular organisms → Archaea	528	Open in IMG/M
3300027846\|Ga0209180_10029028	All Organisms → cellular organisms → Archaea	2971	Open in IMG/M
3300027846\|Ga0209180_10044781	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2427	Open in IMG/M
3300027882\|Ga0209590_10058882	All Organisms → cellular organisms → Archaea	2172	Open in IMG/M
3300031753\|Ga0307477_10218095	All Organisms → cellular organisms → Archaea	1325	Open in IMG/M
3300031820\|Ga0307473_10047798	All Organisms → cellular organisms → Archaea	2004	Open in IMG/M
3300031962\|Ga0307479_10324735	All Organisms → cellular organisms → Archaea	1521	Open in IMG/M
3300032180\|Ga0307471_100112514	All Organisms → cellular organisms → Archaea	2510	Open in IMG/M
3300032205\|Ga0307472_100881640	All Organisms → cellular organisms → Archaea	826	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	98.13%
Loam	Environmental → Terrestrial → Soil → Loam	1.87%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	49.53%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.19%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.54%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.87%

Habitat	Taxonomy	Distribution
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	29.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	27.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	19.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	11.21%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010099	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010134	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012373	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012400	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25381J37097_10048293	3300002557	Grasslands Soil	LEPVDTDETFSWKAATVIMLLLSLFALTMTLLGMNPFTLLFNVALVYLPTVILVGSTLFKRTK
JGI25385J37094_100196042	3300002558	Grasslands Soil	LEPVDTDETFSWKAATVIMLLLSLFALTMTLLGMNPFTLLFNVALVYLPTVILVGSTLFKRTKQSS*
JGI25385J37094_100371582	3300002558	Grasslands Soil	LDPVDKDEAFSWKAATIIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTAILLGSTLFERTTRSS*
JGI25385J37094_101346241	3300002558	Grasslands Soil	MSGSNLEPVDRDETFSWKAATVIMLLFSLFALTMTVLGMNPFTLLFNVALVYLPTVILLGSTLFERTNRSP*
JGI25383J37093_100310173	3300002560	Grasslands Soil	LEPVDKDEXYSWNAATAIMFLVSLFALTMTLLGMNPFTLLFNIALVYLPAVXXLGSALFERTKRSS*
JGI25384J37096_100793172	3300002561	Grasslands Soil	LDPVDKDEAFSWKAATIIMLLFSLFALTMTLLGMNPFTILFNVALVYLPTAILLGSTLFERTTRSS*
JGI25382J37095_101857272	3300002562	Grasslands Soil	DERYSWNAATAIMFLVSLFALTMTLLGMNPFTLLFNIALVYLPAVILLGSALFERTKRSS
JGI25382J37095_101950421	3300002562	Grasslands Soil	LEPVDKDEAFSWKAATVIMLLFSLFALTMMVLGMNPFTLLFNATLVYLPTVILLGSSLFARNKRSS*
JGI25382J43887_100006051	3300002908	Grasslands Soil	NLEPVDKDEAFSWKAATVIMLLFSLFALTMMVLGMNPFTLLFNATLVYLPTVILLGSSLFARNKRSS*
JGI25382J43887_100009372	3300002908	Grasslands Soil	LEPVDKDEXYSWNAATAIMFLVSLFALTMTLLGMNPFTLLFNIALVYLPAVILLGSALFERTKRSS*
JGI25382J43887_102437442	3300002908	Grasslands Soil	VSGRNLEPVDTDEAFSWNAATVIMLLFSLFALTMTFLAMNPFTLLFNVALVYLPAVILLGSAIFERTRRPS*
JGI25382J43887_102949962	3300002908	Grasslands Soil	LEPTDKDDVFSWQAATVIMLLFSLLALTTGLLGLNPFSILFNVALVYVPTLVLLSSTVFERSKGPS*
JGI25388J43891_10034744	3300002909	Grasslands Soil	LDPVDKDEAFSWKAATITMLLFALFALTMTLLGMNPFTLLFNVALVYLPAAILLGSTLFERTTRSS*
JGI25390J43892_100232492	3300002911	Grasslands Soil	LEPVDKDETYSWNAATAIMFLVSLFALTMTLLGMNPFTLLFNIALVYLPAVILLGSALFERTKRSS*
JGI25390J43892_100893322	3300002911	Grasslands Soil	LDPVDKDEAFSWKAATIIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPAAILLGSILFERTTRSS*
JGI25390J43892_101722572	3300002911	Grasslands Soil	LEPVDKDEKFSWNAATVIMLLFALFAMTTTLLTMNPFTLLFNVALVYLPTVILLGSAILERNKRPS*
JGI25389J43894_10231772	3300002916	Grasslands Soil	LEPVDKEETFSSKAATVIMLLVSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSTLFKRTKQSP*
Ga0066674_102578922	3300005166	Soil	LDPVDKDEAFSWKAATIIMLLFSSFAVTMTLLGMNPFTLLFNVALVYLPTAILLGSTLFERTTRSL*
Ga0066680_106784792	3300005174	Soil	LEPVDKEETFSGKAATVIMLLLSLFALTMTLLGMNPFTLLFNVALVYLPTVILVGSTLFKRTKQSS*
Ga0066688_108670142	3300005178	Soil	LEPVDKEETFSWKVATVIMLLLSLFALTMTLLGMNPFTLLFNVALVYLPTVILVGSTLFKRTKQSS*
Ga0066678_108328231	3300005181	Soil	LEPVDKDEAFSWKAATVIMLLFSLFALTMMVLGMNPFTLLFNATLVYLPTVILLGSSLFARNKRSW*
Ga0070707_1000775574	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LEPVDTDETFSWKAATVIMLLFSLFALTMSLLAMNPFTLLFNVALVYFPTVILLGSAIFERTTRPS*
Ga0070697_1000255614	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LEPVDTDETFSWNAATVIMLLFSLFALTMSLLAMNPFSLLFNVALVYLPTVILLGSAILERTRRAS*
Ga0066701_101874332	3300005552	Soil	VSNQNLDPVDKDEAFSWKAATIIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTAILLGSTLFERTTRSS*
Ga0066701_102938302	3300005552	Soil	LEPVDKDERYSWNAATAIMFLVSLFALTMTLLGMNPFTLLFNIALVYLPAVILLGSALFERTKRSS*
Ga0066701_105947982	3300005552	Soil	LEPVDKEETFSWKSATVIMLLLSLFALTMTLLGMNPFTLLFNVALVYLPTVILVGSTLFKRTKQSS*
Ga0066701_106102182	3300005552	Soil	LEPVDKEETFSRKAATVIMLLVSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSTLFKRTKQSP*
Ga0066695_108497632	3300005553	Soil	LDPVDKDEAFSWKAATIIMLLFSSFALTMTLLGMNPFTLLFNVALVYLPTAILLGSTLFERATRSS*
Ga0066661_100018169	3300005554	Soil	LEPVDKDETFSWKAATVIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSILFARTKRSS*
Ga0066692_100033511	3300005555	Soil	LEPVDRDETFSWKAATVIMLLFSLFALTMTVLGMNPFTLLFNVALVYLPTVILLGSTLFERTNRSP*
Ga0066694_100047001	3300005574	Soil	LDPVDKDEAFSWKAATIIMLLFSSFAVTMTLLGMNPFTLLFNVALVYLPTAILLGSTLFERTTRSS*
Ga0066706_112865951	3300005598	Soil	LEPVDTDETFSWKAATVIMLLLSLFALTMTLLGMNPFTLLFNVALVYLPTVILVGSTL
Ga0066653_100637662	3300006791	Soil	LDPVDKDEAFSWKAATIIMLLFSLFDLTMTLLGMNPFTLLFNVALVYLPAAILLGSTLFERTTRSS*
Ga0066659_117245512	3300006797	Soil	LEPVDKEETFSSKAATVIMLLVSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSTLFKRTKQS
Ga0079221_102097283	3300006804	Agricultural Soil	LEPIDKDDVFSWQAATVIMLLFSLLALTTGLLGLNPFSILFNVALVYVPTLVLVGSTVFERNKRPS*
Ga0079220_106169813	3300006806	Agricultural Soil	LEPIDKDDVFSWQAATVIMLLFSLLALTTGLLGLNPFSILFNVALVYAPTLVLLGSTVFERNKR
Ga0099791_101878142	3300007255	Vadose Zone Soil	LEPVEKDEKFSWNAATVIMLLFALFALTTTLLAMNPFTLLFNIALVYLPTVILLGSAIIERNKGLP*
Ga0099793_100284063	3300007258	Vadose Zone Soil	LEPVDKDEKFSWNAATVIMLLFSLFALTMTLFAMNPFTLLFNVALVYLPTVILLGSAILERNKRPS*
Ga0099793_101094412	3300007258	Vadose Zone Soil	LEPVDKDEKFSWNAATVIMLLFALFALTTTLLAMNPFTLLFNIALVYLPTVILLGSAIIERNKGLP*
Ga0099829_100079212	3300009038	Vadose Zone Soil	LEPVDRDETFSWKAATVIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSTLFGRTKR*
Ga0099829_115957901	3300009038	Vadose Zone Soil	SWRAATVIMLLFSLFALTMSVLGMNPFTLLFNVALVYLPTVILLGTAVFKRTEQSS*
Ga0099827_108276562	3300009090	Vadose Zone Soil	LEPVDKDEKFSWNAATVIMLLFALFALTTTLLAMNPFTLLFNVALVYLPTVILVGSAIIERNKRPS*
Ga0099827_118832452	3300009090	Vadose Zone Soil	VYEQNLEPVDKDEKFSWNAATVIMLLFALFALTTTLLAMNPFTLLFNVALVYLPTVILLGSAILERNK
Ga0066709_1040965452	3300009137	Grasslands Soil	LEPVDKEETFSWKAATVIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSTLFKRTKQSS*
Ga0127450_10888881	3300010099	Grasslands Soil	VSDYNLEPVDKEERFSWKAATVIMLLLSLFALTMTMLGMNPFTLVFNVALVYLPTVILLGSTLFKRTKQSS*
Ga0127484_11408003	3300010134	Grasslands Soil	LDPVDKDEAFSWKAATIIMLLFSSFALTMTLLGMNPFTLLFNVALVYLPTAILL
Ga0134067_100645312	3300010321	Grasslands Soil	MSDYNLEPIDREETFSWKAATVIMLLLSLFALTMTLLGMNPFTLLFNVALVYLPTVILVGSTLFKRTKQSS*
Ga0134080_100125895	3300010333	Grasslands Soil	LDSVDKDEALSWKAATIIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTAILLGSTLFERTTRSS*
Ga0134063_104625082	3300010335	Grasslands Soil	LEPVDKEETFSWKAATVIMLLLSLFALTMTLLGMNPFTLLFNVALVYLPTVILVGSTLFKRTKQSS*
Ga0134071_100273813	3300010336	Grasslands Soil	LEPVDKDDAFSWKAATIIMLLFSLLALTMTLLGMNPFSLMFNVALVYLPTVILLGSTVFKRTKHAS*
Ga0137392_106278852	3300011269	Vadose Zone Soil	LEPVDKDEKFSWNAATVIMLLFALFALTTTLLAMNPFTLLFNVALVYLPTVILLGSAIIERNKLSS*
Ga0137389_111264111	3300012096	Vadose Zone Soil	VSNQNLEPIDKDETFSWNAATVIMLLFALFALTMTLLASNPFTLLFNVALIYLPTVILLGSAILEKNK*
Ga0137364_100830312	3300012198	Vadose Zone Soil	LEPVDKDETLSWKAATVIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSILFGRTKRSS*
Ga0137383_113646481	3300012199	Vadose Zone Soil	VSGSNLEPVDKDETFSWKAATIIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSILFGRTKRSS*
Ga0137365_107476752	3300012201	Vadose Zone Soil	LEPVDKDETFSWKAATVIMLLFSLFALTMTLLGMNPFTLLFNAALVYLPTVILLGSILFARTKRSS*
Ga0137380_101570373	3300012206	Vadose Zone Soil	LEPVDKDETFSWKAATIIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSILFGRTKRSS*
Ga0137380_116118741	3300012206	Vadose Zone Soil	LDPVDKDEAFSWKTATIIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTAILLGSALFERTTRSS*
Ga0137379_107230132	3300012209	Vadose Zone Soil	LEHVDKDEACTWKAVTVIMLLVSLFALTMMVLGMNPFTLLFNATLVYLPTVILLGSSLFARNKRSW*
Ga0137379_112084052	3300012209	Vadose Zone Soil	LDPVDKDEAFSWKAATIIMLLFSLFALTMTLLEMNPFTLLFNVALVYLPTAILLGSTLFERTTRSS*
Ga0137386_110225062	3300012351	Vadose Zone Soil	LDPVDKDEAFSCKAATIIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTAILLGSTLFERTTRS
Ga0137369_108403001	3300012355	Vadose Zone Soil	LDPVDKDEAFSWKAATVIMLLFSLFALTMTFLGMNPFTLLFNVALVYLPTAILLGF
Ga0137384_100526492	3300012357	Vadose Zone Soil	VSGSNLEPVDKDETFSWKAATIIMLLFSLFALTMTLLGMNPFTLLFNAALVYLPTVILLGSILFARTKRSS*
Ga0137385_1000570712	3300012359	Vadose Zone Soil	VSGSNLEPVDKDETFSWKAATIIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSILFARTKRSS*
Ga0137361_104829192	3300012362	Vadose Zone Soil	LEPVDKDEKFSWNAATVIMLLFALFALTTTLLAMNPFTLLFNVALVYLPTVILVGSAILERNKRPS*
Ga0134042_10397221	3300012373	Grasslands Soil	NLDPVDKDEAFSWKAATIIMLLFSSFALTMTLLGMNPFTLLFNVALVYLPTAILLGSTLFERATRSS*
Ga0134048_10728623	3300012400	Grasslands Soil	LDPVDKDEAFSWKAATITMLLFALFALTMTLLGMNPFTLLFNVALVYLPAAILLGSILFE
Ga0134059_13827671	3300012402	Grasslands Soil	LEPVDKDETYSWNAATAIMFLVSLFALTMTLLGMNPFTLLFNIALVYLPAVILLGSALFERTKRS
Ga0137396_100195014	3300012918	Vadose Zone Soil	VSNQNLEPVDKDEKISWNAATVIMLLFSLFAVTMTLLAINPFTLLFNVALVYLPTVILLGSAIIERNKRPS*
Ga0134077_100942032	3300012972	Grasslands Soil	LQPVDKEETFSWKAATVIMLLVSLFALTMTLLGMNPFTLLFNIALVYLPAVILLGSALFERTKRSS*
Ga0134076_100415873	3300012976	Grasslands Soil	LDPVDKDEAFSWKAATITMLLFALFALTMTLLGMNPFTLLFNVALVYLPAAILLGSILFERTTRSS*
Ga0134087_104038841	3300012977	Grasslands Soil	LEPIDREETFSWKAATVIMLLVSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSTLFKRTKQSP*
Ga0066667_100228605	3300018433	Grasslands Soil	LDPVDKDEAFSWKAATIIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPAAILLGSILFERTTRSS
Ga0066667_111982531	3300018433	Grasslands Soil	LEPVDKEETFSSKAATVIMLLVSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSTLFKRTKQSP
Ga0066662_104469032	3300018468	Grasslands Soil	LEPVDKDERYSWNAATAIMFLVSLFALTMTLLGMNPFTLLFNIALVYLPAVILLGSALFERTKRSS
Ga0066662_105538632	3300018468	Grasslands Soil	LEPVDKEETFSWKVATVIMLLLSLFALTMTLLGMNPFTLLFNVALVYLPTVILVGSTLFKRTKQSS
Ga0215015_105800223	3300021046	Soil	LEPVDKDEKFSWNAATVIMLLFSLFVLTMTLSAMNPFTLLFNVALVYLPTVMLLGSAIFERTKRPA
Ga0215015_110448922	3300021046	Soil	MSDYNLEPVEKAESFSWNAATVIMLLFSLLALTMTVLGMNPFTLLFNVSLVYLPTVILLGSGIFERSKRAS
Ga0179596_104550302	3300021086	Vadose Zone Soil	NLEPVDKDEKFSWNAATVIMLLFALFALTTTLLAMNPFTLLFNVALVYLPTIILLGSAILERSKRSS
Ga0210404_104280892	3300021088	Soil	LEPVDKDEKFSWSAATVIMLLFSFFALTMTLFAMNPFTLLFNVALVYLPTIVLLGSAIFERTKPPS
Ga0209350_10006114	3300026277	Grasslands Soil	LDPVDKDEAFSWKAATITMLLFALFALTMTLLGMNPFTLLFNVALVYLPAAILLGSTLFERTTRSS
Ga0209234_12387911	3300026295	Grasslands Soil	LEPVVNEETFSSKAATVIMLLVSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSTLFKRTKQSS
Ga0209235_100020114	3300026296	Grasslands Soil	LEPVDKDETYSWNAATAIMFLVSLFALTMTLLGMNPFTLLFNIALVYLPAVILLGSALFERTKRSS
Ga0209235_10827572	3300026296	Grasslands Soil	LEPVDTDETFSWKAATVIMLLLSLFALTMTLLGMNPFTLLFNVALVYLPTVILVGSTLFKRTKQSS
Ga0209236_100173715	3300026298	Grasslands Soil	LEPVDKDEAFSWKAATVIMLLFSLFALTMMVLGMNPFTLLFNATLVYLPTVILLGSSLFARNKRSS
Ga0209236_10454852	3300026298	Grasslands Soil	LEPVDRDETFSWKAATVIMLLFSLFALTMTVLGMNPFTLLFNVALVYLPTVILLGSTLFERTNRSP
Ga0209055_10591452	3300026309	Soil	LEPVDKDETFSWKAATVIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSILFARTKRSS
Ga0209239_10280042	3300026310	Grasslands Soil	LEPVDKEETFSWKAATVIMLLLSLFALTMTLLGMNPFTLLFNVALVYLPTVILVGSTLFKRTKQSS
Ga0209761_10088483	3300026313	Grasslands Soil	LDPVDKDEAFSWKAATIIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTAILLGSTLFERTTRSS
Ga0209761_13282162	3300026313	Grasslands Soil	MSGSNLEPVDRDETFSWKAATVIMLLFSLFALTMTVLGMNPFTLLFNVALVYLPTVILLGSTLFERTNRSP
Ga0209154_10133496	3300026317	Soil	LEPVDKEETFSGKAATVIMLLLSLFALTMTLLGMNPFTLLFNVALVYLPTVILVGSTLFKRTKQSS
Ga0209154_12922672	3300026317	Soil	VSGSNLEPVDKDETFSWKAATVIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTAILLGSTYVERTKR
Ga0209152_101208511	3300026325	Soil	LEPVDKEETFSWKAATVIMLLVSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSTLFKRTKQSP
Ga0209803_10270334	3300026332	Soil	LEPVDKDEAFSWKAATVIMLLFSLFALTMMVLGMNPFTLLFNATLVYLPTVILLGSSLFARNKRSW
Ga0257181_10949592	3300026499	Soil	LEPVDKDEKFSWNAATVIMLLFSLFALTMTLLAMNPFTLLFNVALVYLPTVILVGSAIIERNKRPS
Ga0209690_100160610	3300026524	Soil	LEPVDKEETFSWKSATVIMLLLSLFALTMTLLGMNPFTLLFNVALVYLPTVILVGSTLFKRTKQSS
Ga0209648_100134984	3300026551	Grasslands Soil	LEPVDKDEKFSWNAATVIMLLFALFALTTTLLAMNPFSLLFNVALVYLPTVILLGSAILKRNKRPS
Ga0209076_10009026	3300027643	Vadose Zone Soil	LEPVDKDEKFSWNAATVIMLLFALFALTTTLLAMNPFTLLFNIALVYLPTVILLGSAIIERNKGLP
Ga0209076_10177962	3300027643	Vadose Zone Soil	LEPVDKDEKFSWNAATVIMLLFSLFALTMTLFAMNPFTLLFNVALVYLPTVILLGSAILERNKRPS
Ga0209388_12160331	3300027655	Vadose Zone Soil	LEPVEKDEKFSWNAATVIMLLFALFALTTTLLAMNPFTLLFNIALVYLPTVILLGSAIIERNKG
Ga0209180_100290285	3300027846	Vadose Zone Soil	LGSVFNQNLEPIDKDETFSWNAATVIMLLFALFALTTTLLAMNPFTLLFNVALVYLPTVILVGSAIIERNKRPS
Ga0209180_100447813	3300027846	Vadose Zone Soil	LEPVDRDETFSWKAATVIMLLFSLFALTMTLLGMNPFTLLFNVALVYLPTVILLGSTLFGRTKR
Ga0209590_100588823	3300027882	Vadose Zone Soil	VFNQNLEPIDKDETFSWNAATVIMLLFALFALTMTLLAMNPFTLLFNVALVYLPTVILVGSAIIERNKRPS
Ga0307477_102180952	3300031753	Hardwood Forest Soil	LEPTDKDDAFSWQAATVIMLLFSLLALTTGLLGLNPFSILFNVALVYVPTLVLVGSTVFERNKKRS
Ga0307473_100477983	3300031820	Hardwood Forest Soil	LEPIDKDDVFSWQAATVIMLLFSLLALTTGLLGLNPFSILFSVALVYVPTLVLVGSTVFERNKRPS
Ga0307479_103247352	3300031962	Hardwood Forest Soil	LEPIDKDDVFSWQAATVIMLLFSLLALTTGLLGLNPFSILFNVALVYVPTLVLAGSTVFERNKRPS
Ga0307471_1001125144	3300032180	Hardwood Forest Soil	LEPTDKDDVFSWHAATVIMLLFSLLALTTGLLGVNPFSILFNVALVYVPTLVLVGSTVFERNKRTS
Ga0307472_1008816402	3300032205	Hardwood Forest Soil	LEPIDKDDVFSWQAATVIMLLFSLLALTAGLLGLNPFSILFNVALVYVPTLVLVGSTVFERNKRPS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091779

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences