Metagenome / Metatranscriptome Family F091764

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F091764
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	65 residues
Representative Sequence	MSIYEALGMGYVVAATAAFTAEVIYFAVKGLIYLQRLVQRAQTEEILDLERSLSIKRELANTEYSG
Number of Associated Samples	80
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	87.85 %
% of genes near scaffold ends (potentially truncated)	22.43 %
% of genes from short scaffolds (< 2000 bps)	88.79 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (86.916 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (27.103 % of family members)
Environment Ontology (ENVO)	Unclassified (59.813 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (87.850 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 67.02% β-sheet: 0.00% Coil/Unstructured: 32.98%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00083	Sugar_tr	4.72
PF00072	Response_reg	2.83
PF13030	DUF3891	2.83
PF01292	Ni_hydr_CYTB	2.83
PF04273	BLH_phosphatase	2.83
PF12697	Abhydrolase_6	2.83
PF01738	DLH	1.89
PF01610	DDE_Tnp_ISL3	0.94
PF00311	PEPcase	0.94
PF05958	tRNA_U5-meth_tr	0.94
PF02518	HATPase_c	0.94
PF02687	FtsX	0.94
PF01548	DEDD_Tnp_IS110	0.94
PF02012	BNR	0.94
PF04073	tRNA_edit	0.94
PF00448	SRP54	0.94
PF14236	DUF4338	0.94
PF03065	Glyco_hydro_57	0.94
PF00296	Bac_luciferase	0.94
PF01258	zf-dskA_traR	0.94
PF14559	TPR_19	0.94
PF13570	PQQ_3	0.94
PF00174	Oxidored_molyb	0.94
PF13689	DUF4154	0.94
PF13115	YtkA	0.94
PF00873	ACR_tran	0.94
PF09957	VapB_antitoxin	0.94
PF00033	Cytochrome_B	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	2.83
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	2.83
COG3038	Cytochrome b561	Energy production and conversion [C]	2.83
COG3453	Predicted phosphohydrolase, protein tyrosine phosphatase (PTP) superfamily, DUF442 family	General function prediction only [R]	2.83
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	2.83
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	2.83
COG1290	Cytochrome b subunit of the bc complex	Energy production and conversion [C]	0.94
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	0.94
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.94
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.94
COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	Translation, ribosomal structure and biogenesis [J]	0.94
COG2352	Phosphoenolpyruvate carboxylase	Energy production and conversion [C]	0.94
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.94
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.94
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.92 %
Unclassified	root	N/A	13.08 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.92 %
Unclassified	root	N/A	13.08 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.92 %
Unclassified	root	N/A	13.08 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	66.36 %
Unclassified	root	N/A	13.08 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.74 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	22.43 %
Unclassified	root	N/A	13.08 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.87 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.08 %
Unclassified	root	N/A	13.08 %
Acidobacteria bacterium 13_1_20CM_2_55_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_55_15	7.48 %
Acidobacteria bacterium 13_1_40CM_3_56_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	1.87 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.87 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.08 %
Unclassified	root	N/A	13.08 %
Acidobacteria bacterium 13_1_20CM_2_55_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_55_15	7.48 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1.87 %
Acidobacteria bacterium 13_1_40CM_3_56_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	1.87 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.08 %
Unclassified	root	N/A	13.08 %
Acidobacteria bacterium 13_1_20CM_2_55_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_55_15	7.48 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1.87 %
Acidobacteria bacterium 13_1_40CM_3_56_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	1.87 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.93 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.08 %
Unclassified	root	N/A	13.08 %
Acidobacteria bacterium 13_1_20CM_2_55_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_55_15	7.48 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1.87 %
Acidobacteria bacterium 13_1_40CM_3_56_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	1.87 %
Paraburkholderia solitsugae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia solitsugae	0.93 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10025987	All Organisms → cellular organisms → Bacteria → Acidobacteria	2081	Open in IMG/M
3300002558\|JGI25385J37094_10169831	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300002561\|JGI25384J37096_10165409	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_55_15	684	Open in IMG/M
3300002562\|JGI25382J37095_10015957	All Organisms → cellular organisms → Bacteria	2873	Open in IMG/M
3300005166\|Ga0066674_10010674	All Organisms → cellular organisms → Bacteria → Acidobacteria	3787	Open in IMG/M
3300005166\|Ga0066674_10025645	All Organisms → cellular organisms → Bacteria	2578	Open in IMG/M
3300005166\|Ga0066674_10067358	Not Available	1636	Open in IMG/M
3300005166\|Ga0066674_10070290	All Organisms → cellular organisms → Bacteria	1602	Open in IMG/M
3300005167\|Ga0066672_10177907	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1347	Open in IMG/M
3300005171\|Ga0066677_10502207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_55_15	697	Open in IMG/M
3300005172\|Ga0066683_10150968	All Organisms → cellular organisms → Bacteria → Acidobacteria	1426	Open in IMG/M
3300005172\|Ga0066683_10242149	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300005175\|Ga0066673_10214787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1103	Open in IMG/M
3300005177\|Ga0066690_10524220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia solitsugae	795	Open in IMG/M
3300005178\|Ga0066688_10941135	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300005186\|Ga0066676_10503748	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	822	Open in IMG/M
3300005332\|Ga0066388_100778096	All Organisms → cellular organisms → Bacteria	1553	Open in IMG/M
3300005446\|Ga0066686_10198616	All Organisms → cellular organisms → Bacteria → Acidobacteria	1343	Open in IMG/M
3300005446\|Ga0066686_11127769	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300005529\|Ga0070741_11601820	Not Available	533	Open in IMG/M
3300005531\|Ga0070738_10375299	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	568	Open in IMG/M
3300005540\|Ga0066697_10080793	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1876	Open in IMG/M
3300005540\|Ga0066697_10542762	Not Available	653	Open in IMG/M
3300005552\|Ga0066701_10766660	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300005558\|Ga0066698_10753427	All Organisms → cellular organisms → Bacteria → Acidobacteria	636	Open in IMG/M
3300005561\|Ga0066699_11057807	All Organisms → cellular organisms → Bacteria → Acidobacteria	560	Open in IMG/M
3300005574\|Ga0066694_10316009	All Organisms → cellular organisms → Bacteria → Acidobacteria	743	Open in IMG/M
3300005574\|Ga0066694_10477656	Not Available	582	Open in IMG/M
3300005576\|Ga0066708_10581723	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_55_15	719	Open in IMG/M
3300005764\|Ga0066903_101442097	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300005764\|Ga0066903_105604202	Not Available	661	Open in IMG/M
3300006032\|Ga0066696_10893865	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300006046\|Ga0066652_100984816	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	801	Open in IMG/M
3300006791\|Ga0066653_10407537	All Organisms → cellular organisms → Bacteria → Acidobacteria	695	Open in IMG/M
3300006806\|Ga0079220_11510750	All Organisms → cellular organisms → Bacteria → Acidobacteria	577	Open in IMG/M
3300006806\|Ga0079220_11510750	All Organisms → cellular organisms → Bacteria → Acidobacteria	577	Open in IMG/M
3300006904\|Ga0075424_102727605	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300006914\|Ga0075436_101029675	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300006954\|Ga0079219_11422869	All Organisms → cellular organisms → Bacteria → Acidobacteria	621	Open in IMG/M
3300006954\|Ga0079219_12438703	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300009012\|Ga0066710_101148927	All Organisms → cellular organisms → Bacteria → Acidobacteria	1202	Open in IMG/M
3300009012\|Ga0066710_102422666	All Organisms → cellular organisms → Bacteria → Acidobacteria	761	Open in IMG/M
3300009012\|Ga0066710_102549698	All Organisms → cellular organisms → Bacteria → Acidobacteria	737	Open in IMG/M
3300009137\|Ga0066709_102427442	All Organisms → cellular organisms → Bacteria → Acidobacteria	711	Open in IMG/M
3300010046\|Ga0126384_10192370	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	1608	Open in IMG/M
3300010303\|Ga0134082_10116113	Not Available	1067	Open in IMG/M
3300010303\|Ga0134082_10387315	All Organisms → cellular organisms → Bacteria → Acidobacteria	597	Open in IMG/M
3300010304\|Ga0134088_10000534	All Organisms → cellular organisms → Bacteria	13328	Open in IMG/M
3300010304\|Ga0134088_10070763	All Organisms → cellular organisms → Bacteria → Acidobacteria	1621	Open in IMG/M
3300010304\|Ga0134088_10122897	All Organisms → cellular organisms → Bacteria → Acidobacteria	1228	Open in IMG/M
3300010322\|Ga0134084_10408824	Not Available	531	Open in IMG/M
3300010329\|Ga0134111_10117924	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1030	Open in IMG/M
3300010333\|Ga0134080_10121238	All Organisms → cellular organisms → Bacteria → Acidobacteria	1091	Open in IMG/M
3300010335\|Ga0134063_10272144	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	810	Open in IMG/M
3300010336\|Ga0134071_10007681	All Organisms → cellular organisms → Bacteria	4217	Open in IMG/M
3300010398\|Ga0126383_12339789	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_55_15	620	Open in IMG/M
3300010401\|Ga0134121_11053270	Not Available	802	Open in IMG/M
3300011120\|Ga0150983_11333189	Not Available	839	Open in IMG/M
3300011120\|Ga0150983_11974035	Not Available	557	Open in IMG/M
3300012206\|Ga0137380_10878939	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_55_15	771	Open in IMG/M
3300012206\|Ga0137380_11111014	All Organisms → cellular organisms → Bacteria → Acidobacteria	673	Open in IMG/M
3300012206\|Ga0137380_11117520	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_55_15	671	Open in IMG/M
3300012212\|Ga0150985_122511441	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1465	Open in IMG/M
3300012351\|Ga0137386_10250607	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300012351\|Ga0137386_10665785	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300012351\|Ga0137386_10753711	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_55_15	699	Open in IMG/M
3300012373\|Ga0134042_1224850	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_55_15	623	Open in IMG/M
3300012379\|Ga0134058_1148220	Not Available	596	Open in IMG/M
3300014154\|Ga0134075_10029961	All Organisms → cellular organisms → Bacteria → Acidobacteria	2208	Open in IMG/M
3300016341\|Ga0182035_11202328	All Organisms → cellular organisms → Bacteria → Acidobacteria	677	Open in IMG/M
3300016387\|Ga0182040_11083042	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300016404\|Ga0182037_11468610	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300017654\|Ga0134069_1017428	All Organisms → cellular organisms → Bacteria	2135	Open in IMG/M
3300017656\|Ga0134112_10129554	All Organisms → cellular organisms → Bacteria → Acidobacteria	962	Open in IMG/M
3300017659\|Ga0134083_10014037	All Organisms → cellular organisms → Bacteria	2742	Open in IMG/M
3300018431\|Ga0066655_10001418	All Organisms → cellular organisms → Bacteria → Acidobacteria	8628	Open in IMG/M
3300018431\|Ga0066655_10006922	All Organisms → cellular organisms → Bacteria → Acidobacteria	4711	Open in IMG/M
3300018431\|Ga0066655_10085251	All Organisms → cellular organisms → Bacteria	1732	Open in IMG/M
3300018431\|Ga0066655_10410866	All Organisms → cellular organisms → Bacteria → Acidobacteria	893	Open in IMG/M
3300018433\|Ga0066667_10262133	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1318	Open in IMG/M
3300018433\|Ga0066667_10449141	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1053	Open in IMG/M
3300018433\|Ga0066667_11152526	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300018482\|Ga0066669_10623052	Not Available	947	Open in IMG/M
3300020581\|Ga0210399_10990156	All Organisms → cellular organisms → Bacteria → Acidobacteria	678	Open in IMG/M
3300021168\|Ga0210406_10380632	All Organisms → cellular organisms → Bacteria → Acidobacteria	1134	Open in IMG/M
3300022507\|Ga0222729_1065074	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300022533\|Ga0242662_10317458	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300022724\|Ga0242665_10142299	Not Available	751	Open in IMG/M
3300022726\|Ga0242654_10162349	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300026296\|Ga0209235_1007691	All Organisms → cellular organisms → Bacteria → Proteobacteria	6032	Open in IMG/M
3300026298\|Ga0209236_1091168	All Organisms → cellular organisms → Bacteria → Acidobacteria	1391	Open in IMG/M
3300026306\|Ga0209468_1118310	All Organisms → cellular organisms → Bacteria → Acidobacteria	796	Open in IMG/M
3300026307\|Ga0209469_1069020	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300026313\|Ga0209761_1192460	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	909	Open in IMG/M
3300026314\|Ga0209268_1036282	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300026332\|Ga0209803_1076448	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	1409	Open in IMG/M
3300026536\|Ga0209058_1141293	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1152	Open in IMG/M
3300026540\|Ga0209376_1105056	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1436	Open in IMG/M
3300027965\|Ga0209062_1280504	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	569	Open in IMG/M
3300031719\|Ga0306917_10383540	All Organisms → cellular organisms → Bacteria → Acidobacteria	1096	Open in IMG/M
3300031879\|Ga0306919_11504468	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300031910\|Ga0306923_11855272	All Organisms → cellular organisms → Bacteria → Acidobacteria	617	Open in IMG/M
3300031962\|Ga0307479_10683805	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1006	Open in IMG/M
3300032180\|Ga0307471_102489513	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300032180\|Ga0307471_103528539	Not Available	554	Open in IMG/M
3300032205\|Ga0307472_100381570	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1171	Open in IMG/M
3300032261\|Ga0306920_102341644	All Organisms → cellular organisms → Bacteria → Acidobacteria	739	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.20%
Host-Associated	Host-Associated	2.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.20%
Plants	Host-Associated → Plants	2.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.20%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.65%
Loam	Environmental → Terrestrial → Soil → Loam	6.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	44.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	27.10%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	17.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	14.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.54%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.74%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012373	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012379	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027965	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_100259873	3300002558	Grasslands Soil	MSIYEALGMGYVVAATAAFTAEVIYFAVKGLIYLQRLVQRAQTEEILDLERSLSIKRELANTEYSGASAGK*
JGI25385J37094_101698312	3300002558	Grasslands Soil	MSIYEALGIGYVLASTAIVTAEMIYFGAKGVSYMHRLVQRAQTEENLDLQRSLSIKRDLADVGKFER*
JGI25384J37096_101654091	3300002561	Grasslands Soil	MSIYEALGMGYVVAATAAFTAEVIYFAVKGLIYXQRLVXRAQTEEILDLERSLSIKRELANTEYSGASAGK*
JGI25382J37095_100159573	3300002562	Grasslands Soil	MSIYEALGMGYVVAATAAFTAEVIYFAVKGLIYLQRLVQRAQTXEIXDLERSLSIKRELANTEYSGASAGK*
Ga0066674_100106743	3300005166	Soil	MSIYEVLGMGYVVAATATFTAEVIYFAAKGLIYLQRLVQRAQEEEILDLERSLSIKRELANSEYSGAVSAK*
Ga0066674_100256455	3300005166	Soil	MSFYEALGIAYVIGGTTVFTAEVIYCATKGLAYMQRLIQRAQTEETLDLQRSLSIKRELASTD*
Ga0066674_100673583	3300005166	Soil	MSIYEALGIGYVLASTAILTAEMIYFGAKGVSYMHRLVQRAQTEENLDLQRSLSIKRELADVGKFER*
Ga0066674_100702902	3300005166	Soil	MSIYEALGMGYVVAATAAFTAEVIYFAVKGLIYLQRLVQRAQTEEVLDLERSLSIKRELANTEYSGASAGK*
Ga0066672_101779071	3300005167	Soil	MSIYEAVGIGYVIIGTAAFTVQVIYCAAKGLGYIQRLIQRAQAEETLDLQRSLSIKRELANAE*
Ga0066677_105022071	3300005171	Soil	MSIYEALGMGYVVAATAAFTAEVIYFAVKGLIYLQRLVQRAQTEEILDLERSVSIKRELANTEYSGASAGK*
Ga0066683_101509683	3300005172	Soil	MSIYEALGMGYVVAATAAFTAEVIYFAAKGLIYLQRLVQRAQAEEILDLERSLSIKRELANTEYSGAATGK*
Ga0066683_102421492	3300005172	Soil	MSIYEALGMGYVVAATAAFTAEVIYFAVKGLIYLQRLVQRAQTEEILDLERSLSIKRELANTEYSGVSAGK*
Ga0066673_102147871	3300005175	Soil	MSIYEAVGIGYVIIGTAAFTVQAIYCAAKGLGYIQRLIQRAQAEETLDLQRSLSIKRELASTD*
Ga0066690_105242202	3300005177	Soil	ENNEMSIYEALGIGYVLASTAILTAEMIYFGAKGVSYMHRLVQRAQTEENLDLQRSLSIKRELADVGKFER*
Ga0066688_109411352	3300005178	Soil	NEMSIYEALGIGYVLASTAIFTAEMIYFGAKGVSYMHRLVQRAQTEENLDLQRSLSIKRDLADVGKFER*
Ga0066676_105037482	3300005186	Soil	VSIYEALGIGYVIASTTIFSAQIIYFAIKGLNYIHRLIMRAQTEESLDLQRSLSIKQELAKVD*
Ga0066388_1007780962	3300005332	Tropical Forest Soil	MSFYEALGIAYVIGATTVFTAEVIYCATKGLAFMQRLIQRAQTEETLDLQRSLSIKRELASTD*
Ga0066686_101986161	3300005446	Soil	MSIYEVLGTGYVIAGTAVFTVQLIYCAVKGLAYMQRLIQRAQAEEALDLQRSLSIKRELVNAE*
Ga0066686_111277691	3300005446	Soil	MSIYEALGIGYVLASTAIVTAEMIYFGARGVSYMHRLVQRAQTEENLDLQRSLSIKRELADVGKFER*
Ga0070741_116018202	3300005529	Surface Soil	MSIYEALGIGYVIAGTAAFTVQIIYFSSKGLAYVQRLIQRAQAEETLDLQRSLSIKEEIASTMRD*
Ga0070738_103752991	3300005531	Surface Soil	GIGYVLICTTMFTAQLVYFGIKGVNYMHRLVQRAQAEETLDLQRTLSIKRELAKVD*
Ga0066697_100807934	3300005540	Soil	MSIYEALGMGYVVAATAAFTAEVIYFAAKGLIYLQRLVQRAQEEEILDLERSLSIKRELANSEYSGAVSAK*
Ga0066697_105427622	3300005540	Soil	MSFYEALGIAYVIGGTTVFTAEVIYCATKGLAYMQRLIQRAKTEETLDLQRSLSIKRELASTD*
Ga0066701_107666601	3300005552	Soil	MSIYEVLGTGYVIAGTAVFTVQLIYCAVKGLAYTQRLIQRAQAEEALDLQRSLSIKRELVNAE*
Ga0066698_107534271	3300005558	Soil	MSIYEALGIGYVLASTAILTAEMIYFGAKGVSYMHRLVQRAQTEENLDLQRSLSIKRELADV
Ga0066699_110578071	3300005561	Soil	MSIYEALGIGYVLASTAILTAEMIYFGAKGVSYMHRLVQRAQTEENLDLQRSLSIKRDLADVAKFER*
Ga0066694_103160092	3300005574	Soil	MSFYEALGIAYVIGGTTVFTAEVIYCATKGLAYMQRLIQRAQTEETLDLQRSLSIKRELANAE*
Ga0066694_104776562	3300005574	Soil	MSIYEAVGIGYVIIGTAAFTVQVIYCAAKGLGYIQRLIQRAQAEETLDLQ
Ga0066708_105817232	3300005576	Soil	MSIYEALGMGYVVAATAAFTAEAIYFAVKGLIYLQRLVQRAQTEEILDLERSLSIKRELANTEYSGASAGK*
Ga0066903_1014420972	3300005764	Tropical Forest Soil	MSIYEALGIAYVLVSTTIFTAEVIYFSLKGVSYLQRLVQRAQTEESLDLQRSLSIKRELAKVDQTS*
Ga0066903_1056042021	3300005764	Tropical Forest Soil	MSFYEALGIAYVIGATTVFTAEVIYCATKGLAFMQRLIQRAQTEETLDLQRSISIKRELASTD
Ga0066696_108938652	3300006032	Soil	MSIYEALGIGYVLASTAILTAEMIYFGAKGVSYMHRLVQRAQTEENLDLQRSLSIKRELADVAKFDR*
Ga0066652_1009848161	3300006046	Soil	MSFYEALGIAYVIGGTTVFTAEVIYCATKGLAYMQRLIQRAKTEETLDLQRSLSI
Ga0066653_104075371	3300006791	Soil	YEALGIAYVIGGTTVFTAEVIYCATKGLAYMQRLIQRAQTEETLDLQRSLSIKRELASTD
Ga0079220_115107501	3300006806	Agricultural Soil	GYVLASTAFFTVQVIYFAAKGVRYVHRLVQRAQVEETLDLQRSLSIKRELADIDE*
Ga0079220_115107502	3300006806	Agricultural Soil	MNIYEPLGIGYLVASTAVFTAELTFLAAKGLGHTHRLIQRAQAEKNLDRERSLSTKGELANVDKNR*
Ga0075424_1027276051	3300006904	Populus Rhizosphere	VSIYEALGIGYVVAGTTIFSAQLIYFAIKGLNYVHRLVQRAQTEENIDIQRSLSIKRELAEVDQA*
Ga0075436_1010296752	3300006914	Populus Rhizosphere	FEALGVGYVLASTAFFTVQVIYFAAKGVRYVHRLVQRAQVEETLDLQRSLSIKRELADIDE*
Ga0079219_114228691	3300006954	Agricultural Soil	MSIYEPLGIGYLVVSTAVFTAEVIYLAAKGVGHMHRLVQRAQAEETLDLQRSLSIKRELAEIDEIER*
Ga0079219_124387031	3300006954	Agricultural Soil	MSIYEVFGMGYVIAGTTFFTAQVIYFSAKGVSYMYRLVQRAQTEETLDLQRSLSIKRELANVEEETVADRRAH*
Ga0066710_1011489272	3300009012	Grasslands Soil	MSIYEVLGTGYVIAGTAVFTVQLIYCAVKGLAYMQRLIQRAQAEEALDLQRSLSIKRELVNAE
Ga0066710_1024226662	3300009012	Grasslands Soil	MSLYETLGIVYVIVGTVLFTSEVIYCATKGLAYMQRLIQRAQTEETLDLQRSLSIKRELANDDNAD
Ga0066710_1025496981	3300009012	Grasslands Soil	MSVYEVLGIGYVIASTAVFTAEVIYFGAKGVSYMHRLVQRAQTEENLDLQRSLSIKRELADVDKFER
Ga0066709_1024274421	3300009137	Grasslands Soil	MSIYEALGMGYVVAATAAFTAEVIYFTAKGLIYLQRLVQRAQAEEILDLERSLSIKRELANTEYSGAATGK*
Ga0126384_101923702	3300010046	Tropical Forest Soil	MSIYEALGMGYVVAATAAFTAEVIYFAAKGLIYLQRLIQRAQEEEILDLERSLSIKRELANTEYSGAASAK*
Ga0134082_101161132	3300010303	Grasslands Soil	MSIYEAVGICYVIIGTAAFTVQVIYCAAKGLGYIQRLIQRAQAEETLDLQRSLSIKRELANAE*
Ga0134082_103873152	3300010303	Grasslands Soil	MSFYEALGIAYVIGGTTVFTAEVIYCATKGLAYMQRLIQRAQTEETLDLQRSLSIKRELAST
Ga0134088_100005344	3300010304	Grasslands Soil	MSIYEVLGIGYVVAGTAAFTVQLIYCSIKGLAYIQRLIQRAQAEEALDLQRSLSIKRELANAD*
Ga0134088_100707632	3300010304	Grasslands Soil	MSVYEAIGLGYVLAGTTVFTAEVIYFGAKGVGYMHRLFLRAQTEENLDLQRS
Ga0134088_101228973	3300010304	Grasslands Soil	MSIYEALGIGYVLASTAIVTAEMIYFGAKGVSYMHRLVQRAQTEENLDLQRSLSIKRELADVAKFER*
Ga0134084_104088241	3300010322	Grasslands Soil	MSIYEVLGMGYVVAATATFTAEVIYFAAKGLIYLQRLVQRAQAEEILDLERSLSIKRELANTEYSGAATGK*
Ga0134111_101179244	3300010329	Grasslands Soil	YVIGGTTVFTAEVIYCPTKGLAYMQRLIQRAQTEETLDLQRSLSIKRELASTD*
Ga0134080_101212383	3300010333	Grasslands Soil	MSLYETLGIVYVIVGTVLFTSEVIYCATKGLAYMQRLIQRAQTEETLDLQRSLSIKRELANADNAD*
Ga0134063_102721442	3300010335	Grasslands Soil	MSIYEVLGIGYVVAGTAAFTVQLIYCSIKGLAYIQRLIQRAQAEEALDLQRSLSIKREL
Ga0134071_100076814	3300010336	Grasslands Soil	MSVYEAIGLGYVLAGTTVFTAEVIYFGAKGVGYMHRLFLRAQTEENLDLQRSLSIKRELADVAKFER*
Ga0126383_123397891	3300010398	Tropical Forest Soil	MSIYEALGMGYVVAATAAFTAEVIYFAAKGLIYLQRLIQRAQEEEILDLERSLSIKR
Ga0134121_110532702	3300010401	Terrestrial Soil	MDVQCEGRMKIRERIMNIFEVLGIGYVIAGTAAFTIQVVYFAAKGLAYMQRLIQRAEAEETLDLRRSLSIKREMAEAMPRD*
Ga0150983_113331891	3300011120	Forest Soil	MSIYEVLGIGYVIAGTTFFTAQVIYFGVKGVSYVHRLVQRAQTEENLDLQRSLSIKRELAAVD*
Ga0150983_119740351	3300011120	Forest Soil	MSIYEVLGIGYVIAGTAAFTVQVVYFAAKGLAYIQRLIQRAEAEESLDLQRSLSIKRELAETAPRD*
Ga0137380_108789391	3300012206	Vadose Zone Soil	MTIYEALGMGYVVAATAAFTAEVIYFAAKGLIYLQRLIQRAQEEEILDLERSLSIKRELANT
Ga0137380_111110142	3300012206	Vadose Zone Soil	MSIYEVLGTGYVIAGTAVFTVQLIYCAVKGLAYMQRLIQRAQAEEALDLQRSLSIK
Ga0137380_111175201	3300012206	Vadose Zone Soil	MSIYEALGMGYVVAATAAFTAEVIYFAVKGLIYLQRLVQRAQTEEILDLERSLSIKRELANTEYSG
Ga0150985_1225114413	3300012212	Avena Fatua Rhizosphere	MSIYEALGIGYVIAGTAIFTVQVIYFSAKGVRYMHRLVERAETEETLDLKRSLSIKRELAEIDE*
Ga0137386_102506071	3300012351	Vadose Zone Soil	ALGMGYVVAATAAFTAEVIYFAVKGLIYLQRLVQRAQTEEILDLERSLSIKRELANTEYSGVSAGK*
Ga0137386_106657852	3300012351	Vadose Zone Soil	VAATAAFTAEVIYFAVKGLIYLQRLVQRAQTEEILDLERSLSIKRELANTEYSGASAGK*
Ga0137386_107537112	3300012351	Vadose Zone Soil	MSIYEALGMGYVVAATAAFTAEVIYFAVKGLIYLQRLVQRAQEEEILDLERSLSIKRELANSEYSGAVSAK
Ga0134042_12248501	3300012373	Grasslands Soil	MSIYEVLGIGYVVAATATFTAEVIYFAAKGLIYLQRLVQRAQEEEILDLERSLSIKRELANSEYSGAVSAK*
Ga0134058_11482201	3300012379	Grasslands Soil	MSIYEVLGMGYVVAATATFTAELIYFAAKGLIYLQRLVQRAQEEEILDLERSLSIKRELANSEYSGAVSAK*
Ga0134075_100299612	3300014154	Grasslands Soil	MSVYEAIGLGYVLAGTTVFTAEVIYFGAKGVGYMHRLFLRAQTEENLDLQRSLSIKRELADVTKFER*
Ga0182035_112023281	3300016341	Soil	VSIYEALGFAYVVVSTTFFTGQVVYFGIKGLTYMHRLVQRAQTEESLDLQRSLSIRRELAKVD
Ga0182040_110830422	3300016387	Soil	VSIYEALGFAYVVVSTTFFTGQVVYFGIKGVTYMHRLVEREQTEECLDLQRSMSIKRELAKVD
Ga0182037_114686101	3300016404	Soil	VSIYEALGIGYVVLCTAVFSAEMIYFALKGLNYVHRLINRAQTEENIDLQRTLSIKQELAKVD
Ga0134069_10174282	3300017654	Grasslands Soil	MSFYEALGIAYVIGGTTVFTAEVIYCATKGLAYMQRLIQRAKTEETLDLQRSLSIKRELASTD
Ga0134112_101295542	3300017656	Grasslands Soil	MSFYEALGIAYVIGGTTVFTAEVIYCATKGLAYMQRLIQRAQTEETLDLQRSLSIKRELASTE
Ga0134083_100140372	3300017659	Grasslands Soil	MSIYEVLGIGYVVAGTAAFTVQLIYCSIKGLAYIQRLIQRAQAEEALDLQRSLSIKRELANAD
Ga0066655_1000141812	3300018431	Grasslands Soil	MSIYEVLGMGYVVAATATFTAEVIYFAAKGLIYLQRLVQRAQEEEILDLERSLSIKRELANSEYSGAVSAK
Ga0066655_100069225	3300018431	Grasslands Soil	MSFYEALGIAYVIGGTTVFTAEVIYCATKGLAYMQRLIQRAQTEETLDLQRSLSIKRELASTD
Ga0066655_100852511	3300018431	Grasslands Soil	MSIYEALGMGYVVAATAAFTAEVIYFAVKGLIYLQRLVQRAQTEEILDLERSLSIKRELANTEYSGVTAGK
Ga0066655_104108661	3300018431	Grasslands Soil	MSIYEALGIGYVLASTAIVTAEMIYFGAKGVSYMHRLVQRAQTEENLDLQRSLSIKRELADVGKFER
Ga0066667_102621331	3300018433	Grasslands Soil	MSIYEAVGIGYVIIGTAAFTVQVIYCAAKGLGYIQRLIQRAQAEETLDLQRSLSIKRELANAE
Ga0066667_104491411	3300018433	Grasslands Soil	MSIYEALGIGYVLASTAILTAEMIYFGAKGVSYMHRLVQRAQTEENLDLQRSLSIKRELADVGKFER
Ga0066667_111525261	3300018433	Grasslands Soil	VVAATAAFTAEVIYFAVKGLIYLQRLVQRAQTEEILDLERSVSIKRELANTEYSGASAGK
Ga0066669_106230522	3300018482	Grasslands Soil	MSIYEAVGICYVIIGTAAFTVQVIYCAAKGLGYIQRLIQRAQAEETLDLQRSLSIKRELANAE
Ga0210399_109901561	3300020581	Soil	MSIYEVFGMGDVIAGTTFFTAQVIYFSAKGVSYMHRLVERAQTEETLDLQRSLSIKRELANVEEETVADRRAH
Ga0210406_103806322	3300021168	Soil	MSIYEALGVGYVVISTAFFTAQVIYFGIKGLDYMHRLVERAQAEEGLDLQRSLSIRRELAKVK
Ga0222729_10650741	3300022507	Soil	MSIYEALGIGYVIAGTSFFTAQVVYFGAKGVGYMQRLIHRAQAEETLDLQRTLSIKRDLANVD
Ga0242662_103174581	3300022533	Soil	MSIYEALGIGYVIAGTSFFTAQVIYFGAKGVGYMQRLIHRAQAEETLDLQRTLSIKRDLANVD
Ga0242665_101422991	3300022724	Soil	MSIYEVFGMGYVIAGTTFFTAQVIYFGVKGVSYVHRLVQRAQTEENLDLQRSLSIKRELAAVD
Ga0242654_101623492	3300022726	Soil	MSIYEVFGMGYVIAGTTFFTAQVIYFSAKGVSYMHRLVQRAQTEETLDLQRSLSIKRELSKVD
Ga0209235_10076915	3300026296	Grasslands Soil	MSIYEALGMGYVVAATAAFTAEVIYFAVKGLIYLQRLVQRAQTEEILDLERSLSIKRELANTEYSGASAGK
Ga0209236_10911682	3300026298	Grasslands Soil	MSIYEALGIGYVLASTAIVTAEMIYFGAKGVSYMHRLVQRAQTEENLDLQRSLSIKRDLADVGKFER
Ga0209468_11183102	3300026306	Soil	MSIYEALGMGYVVAATAAFTAEVIYFAAKGLIYLQRLVQRAQAEEILDLERSLSIKRELANTEYSGAATGK
Ga0209469_10690202	3300026307	Soil	MSIYEALGMGYVVAATAAFTAEVIYFAVKGLIYLQRLVQRAQTEEILDLERSVSIKRELANTEYSGASAGK
Ga0209761_11924602	3300026313	Grasslands Soil	MSIYEVLGIGYVVAGTATFTVQVIYCAVKGLAYVQRLIQRAQAEETLDLQRSLSIKRELANAD
Ga0209268_10362822	3300026314	Soil	MGYVVAATATFTAEVIYFAAKGLIYLQRLVQRAQEEEILDLERSLSIKRELANSEYSGAVSAK
Ga0209803_10764481	3300026332	Soil	MSIYEALGMGYVVAATAAFTAEVIYFAVKGLIYLQRLVQRAQTEEILDLERSLSIKRELANTEYSGVSAGK
Ga0209058_11412932	3300026536	Soil	MSVYEAIGLGYVLAGTTVFTAEVIYFGAKGVGYMHRLFLRAQTEENLDLQRSLSIKRELADVAKFER
Ga0209376_11050564	3300026540	Soil	MSIYEALGIGYVLASTAIVTAEMIYFGARGVSYMHRLVQRAQTEENLDLQRSLSIKRELADVGKFER
Ga0209062_12805042	3300027965	Surface Soil	LGIGYVLICTTMFTAQLVYFGIKGVNYMHRLVQRAQAEETLDLQRTLSIKRELAKVD
Ga0306917_103835403	3300031719	Soil	VSIYEALGIGYVVVSATFFTGQVVYFGIKGVTYMHRLVERAQTEESLDLQRSMSIKRELAKVD
Ga0306919_115044681	3300031879	Soil	VSIYEALGFAYVVVSATFFTGQVVYFGVKGLTYMHRLVERAQTEESLDLQRSMSIKRELAKVD
Ga0306923_118552721	3300031910	Soil	VSIYEALGFAYVVVSATFFTGQVVYFGVKGLTYMHRLVERAQTEESLDLQRSLSIRRELAKVD
Ga0307479_106838051	3300031962	Hardwood Forest Soil	MSIYEVLGIGYAIAGTTAFTVQVVYFAAKGLAYVQRLIQRAEAEESLDLQRSLSIKRELAETAPRD
Ga0307471_1024895132	3300032180	Hardwood Forest Soil	MSIYEVLGIGYVVAGTATFTVQLIYCAVKGLSYIQRLIQRAQAEEALDLQRSLSIKRELANAD
Ga0307471_1035285391	3300032180	Hardwood Forest Soil	MSFYEALGIAYVIGGTTVFTAEVIYCATKGLAFMQRLIQRAQTEETLDLQRSLSIKRELASTD
Ga0307472_1003815702	3300032205	Hardwood Forest Soil	MSFYEALGIAYVIGGTTVFTAEVIYCATKGLAFMQRLIQRAQTEETLDLQRSLSIKRELASTE
Ga0306920_1023416441	3300032261	Soil	MSIYEALGIGYVLVSTTVFTAQAAYFAIKGVNYMHRLVQRAQTEETLDLQRTLSIKRELAKVD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091764

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences