NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F091732

Metagenome / Metatranscriptome Family F091732

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091732
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 47 residues
Representative Sequence MGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFL
Number of Associated Samples 92
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 98.11 %
% of genes near scaffold ends (potentially truncated) 47.66 %
% of genes from short scaffolds (< 2000 bps) 49.53 %
Associated GOLD sequencing projects 92
AlphaFold2 3D model prediction Yes
3D model pTM-score0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (50.467 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(29.907 % of family members)
Environment Ontology (ENVO) Unclassified
(27.103 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(60.748 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74
1A2065W1_102378303
2Ga0055455_101536873
3Ga0062589_1003346331
4Ga0062595_1014259343
5Ga0062592_1023990062
6Ga0066683_102175633
7Ga0066684_109247711
8Ga0066676_111700022
9Ga0068868_1013629121
10Ga0070675_1018709641
11Ga0066689_104696293
12Ga0066681_106416951
13Ga0068867_1015253423
14Ga0068859_1005577631
15Ga0075291_10428831
16Ga0075289_10125433
17Ga0066696_103400951
18Ga0066652_1005424441
19Ga0066658_104580613
20Ga0066665_114452873
21Ga0079219_103722631
22Ga0104324_1135163
23Ga0066710_1045428561
24Ga0105249_106433623
25Ga0126313_102057373
26Ga0134070_100943111
27Ga0134088_103429303
28Ga0134088_103556051
29Ga0134084_102113803
30Ga0134086_104150133
31Ga0134080_100207491
32Ga0134127_127223543
33Ga0120157_10970261
34Ga0137365_101712981
35Ga0137365_102830193
36Ga0137381_109196713
37Ga0137381_110966901
38Ga0137376_100607604
39Ga0137376_106824261
40Ga0137370_104791781
41Ga0137386_101759303
42Ga0137367_103267203
43Ga0137367_104495973
44Ga0137371_109429933
45Ga0137384_101011334
46Ga0137384_115811471
47Ga0137375_102985891
48Ga0137360_102065801
49Ga0157302_100654591
50Ga0137407_102518493
51Ga0162651_1000384511
52Ga0164300_101850303
53Ga0164300_111045501
54Ga0164303_103750713
55Ga0164299_111813153
56Ga0164302_109372341
57Ga0134110_101815531
58Ga0157371_102946991
59Ga0120111_10056815
60Ga0134079_103080873
61Ga0173478_107371272
62Ga0137412_108813893
63Ga0137403_103339581
64Ga0134083_103483921
65Ga0184608_102602141
66Ga0184620_100251033
67Ga0184640_103519211
68Ga0066667_107867051
69Ga0066667_120312722
70Ga0066669_119344053
71Ga0193701_10957471
72Ga0222625_14816793
73Ga0247791_10275581
74Ga0207710_107566801
75Ga0207671_102988071
76Ga0207709_115638843
77Ga0209236_12672423
78Ga0209057_11867761
79Ga0209156_102103771
80Ga0209156_103337911
81Ga0208475_10124601
82Ga0207636_10069751
83Ga0209983_10568861
84Ga0307276_100749903
85Ga0307322_101578463
86Ga0307311_101877921
87Ga0307311_102123363
88Ga0307301_100278683
89Ga0307301_100822253
90Ga0307301_100827443
91Ga0307317_101149031
92Ga0307315_101329773
93Ga0307315_101865813
94Ga0307319_103136203
95Ga0307282_100375824
96Ga0307282_103500211
97Ga0307284_101601043
98Ga0307284_102582563
99Ga0307289_100597313
100Ga0307300_101815913
101Ga0307277_102492113
102Ga0307308_100992481
103Ga0308198_10102143
104Ga0308189_101013891
105Ga0308187_100878091
106Ga0307500_102549463
107Ga0308175_1020947881
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.95%    β-sheet: 0.00%    Coil/Unstructured: 54.05%
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Variant

51015202530354045MGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFLSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
49.5%50.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater Sediment
Natural And Restored Wetlands
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Serpentine Soil
Grasslands Soil
Soil
Soil
Agricultural Soil
Permafrost
Soil
Grasslands Soil
Soil
Rice Paddy Soil
Soil
Soil
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
2.8%29.9%16.8%8.4%3.7%2.8%11.2%4.7%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
A2065W1_1023783033300001537PermafrostMGMPSGDSPQHAQQYYHYLQAHQETMQRAATWHVRWIDLAWLW
Ga0055455_1015368733300003990Natural And Restored WetlandsMGMPSGDTPEKAEQFYHYLNAHQQTMQRAATWEVRWLDLAWLW
Ga0062589_10033463313300004156SoilMGMPSGDSPQTAQSYYHYLQAHQETMQRAATWHVRWVDLAWLWGFVIVLSLIAI
Ga0062595_10142593433300004479SoilMSLVPTSMPSGESPSKALQFYNYLQAHQQTQYKPDTWHVRWLDLAWLWGFLLALALV
Ga0062592_10239900623300004480SoilMGIPSGDSPQKAQQYYHYLQGHQETLQRADTWHVHWIDLAWLWGFLIVLILTILLWI
Ga0066683_1021756333300005172SoilMGMPSGDSPAKAHQYYEYLQSHQQTFQAPATWHVHWLDLAWLWGFLLALAVIILW
Ga0066684_1092477113300005179SoilMGMPKGDSPAKAQQYYHYIQGHSQTLQEPATWHVRWLDLAWLWGFLIVMALLIVWWIWQN
Ga0066676_1117000223300005186SoilMGMPRGDSPAKAHQYYEYLQSHDQTFQAPATWHVHWLDLAWLWGFLVALALIILWWL
Ga0068868_10136291213300005338Miscanthus RhizosphereMGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFVIAL
Ga0070675_10187096413300005354Miscanthus RhizosphereMGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFL
Ga0066689_1046962933300005447SoilMGMPRGDSPAKAHQYYEYLQSHDQTFQPPATWHVHWLDLAWLWGFLIALALI
Ga0066681_1064169513300005451SoilMPSGDSPQHARAYYHYLQAHQQTLHVPATWQVDYLALAWLWGF
Ga0068867_10152534233300005459Miscanthus RhizosphereMRMPSGDTPAKAQAYYHYLNAHQLTMQRPATWEVRWLDLAWLW
Ga0068859_10055776313300005617Switchgrass RhizosphereMGMPSGDSPAKAQAYYHYLQAHQLSMQRPATWEVRWVDLAWLWGFVI
Ga0075291_104288313300005884Rice Paddy SoilMEMPSGDSPATAQAYYHYLQAHQLTLQRPATWEVRW
Ga0075289_101254333300005888Rice Paddy SoilMGMPSGDSPATAQAYYHYLNAHQLSMQRPATWEVRWLDLAWLWGFAIALSVITLLWV*
Ga0066696_1034009513300006032SoilMGMPKGDTPQKAQQYYHYLQGHQETMQRAATWHVHWLDLAWLWGFLIALA
Ga0066652_10054244413300006046SoilMGIPNGDSPAKAHRYYEYLQSHQQTMQEPATWHVRWLDLAWLWGF
Ga0066658_1045806133300006794SoilMGMPSGDSPAHAHAYYQYLQAHQQTMQEPATWHVRWLDLAWMWGFVLVLALT
Ga0066665_1144528733300006796SoilMGMPSGDSPQKANEYYHYLQSHQLTMQRAATWHVRWLDLAWLWG
Ga0079219_1037226313300006954Agricultural SoilMGMPRGSSPDKAQAYYHYLNAHQLSMQRAGTWHVRWIDLAWLWGFMLVLALLILLWVW
Ga0104324_11351633300007820SoilMPSGDSPQHAQQYYHYLQAHQETMQRAATWHVRWIDLAWLWGFVI
Ga0066710_10454285613300009012Grasslands SoilMSMPSGNSPAQVERYYHYLQGHQETMQAAATWHVKWV
Ga0105249_1064336233300009553Switchgrass RhizosphereMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFVIA
Ga0126313_1020573733300009840Serpentine SoilMPSGDSPEDVRQYYDYLQGHEETMQAPATWHVHWLDLAWLWGFLIVLVLAILLWIW
Ga0134070_1009431113300010301Grasslands SoilMPSGDSPAKAHQYYEYLQSHDQTFQAPATWHVHWLDLAWLW
Ga0134088_1034293033300010304Grasslands SoilMAMPRGDSPAKAHQYYEYLQSHDQTLQVPATWHVHWLDLAWLWGFLLALAVIILWWLGQ
Ga0134088_1035560513300010304Grasslands SoilMPSGDSPAKAHQYYEYLQSHDQTLQVPATWHVHWLD
Ga0134084_1021138033300010322Grasslands SoilMPSGDSPQKANEYYHYLQSHQLTMQRAATWHVRWLDLAWLWG
Ga0134086_1041501333300010323Grasslands SoilMGIPSGDSPQKAQQYYHYLQGHSETHYRAATWQVHWLDLAWLWGFVIA
Ga0134080_1002074913300010333Grasslands SoilMGMPSGDSPEKAQQYYHYLQGHQETYYRAATWHVHWLDLAWLWGFL
Ga0134127_1272235433300010399Terrestrial SoilMGLPFMGMPSGDTPDKAQRYYHYLQGHQETMQRAATWHV
Ga0120157_109702613300011994PermafrostMPSGDSPQHAQQYYHYLQAHQETMQRAATWHVRWIDLAWLWGFVIALTLMLLLW
Ga0137365_1017129813300012201Vadose Zone SoilMPSGDSPQHAQQYYHYLQGHQETLQVPATWHVHWLDLAWLWGFL
Ga0137365_1028301933300012201Vadose Zone SoilMPSGDSPAKAHQYYEYLQSHDQTLQVPATWHVHWLDLAWLWGF
Ga0137381_1091967133300012207Vadose Zone SoilMPRGDSPAKAHQYYEYLQSHQQTWQVPATWHVKWLDLA
Ga0137381_1109669013300012207Vadose Zone SoilMGIPSGDTPQKAQAYYHYLQSHQESLQAPNTWTVRWLDL
Ga0137376_1006076043300012208Vadose Zone SoilMPSGDSPQKAQQIVHYLQGHDQTYYRAATWQVRWLDLAWLWGFAIALTAAILLWV
Ga0137376_1068242613300012208Vadose Zone SoilMPRGDSPAKAHQYYEYLQSHQQTLQPPATWHVHWLDLAWLWGFL
Ga0137370_1047917813300012285Vadose Zone SoilMGLPMMGMPSGDTPDKARQYYLYLQGHQETMQRAATWHVRWL
Ga0137386_1017593033300012351Vadose Zone SoilMGMPSGDSPAKAHQYYEYLQSHDQTLQVPATWHVHWIDLAWLWGFLLALAVIILWWLRQ*
Ga0137367_1032672033300012353Vadose Zone SoilMPSGESPSKAHQYYEYLQSHQQTQQVPATWHVRWLD
Ga0137367_1044959733300012353Vadose Zone SoilMGLPMMAMPGGDTPDKARQYYLYLQGHQETMQRAATWHVRWLDLAWLWGFL
Ga0137371_1094299333300012356Vadose Zone SoilMPSGDTPDKAQRYYHYLQGHQETMQRAATWHVHWLDLAWLWGFLIALALA
Ga0137384_1010113343300012357Vadose Zone SoilMPSGDSPAKAHQYYEYLQSHDQTLQVPATWHVHWLDLAWLWGFLLAL
Ga0137384_1158114713300012357Vadose Zone SoilMGMPSGDSPAKAHQYYEYLQSHDQTLQVPATWHVHWLDLAWLWGFLL
Ga0137375_1029858913300012360Vadose Zone SoilMPSGDTPQKVQDYYQYLQAHQETVHAPATWHVRWLDLAWLWGFLIVLA
Ga0137360_1020658013300012361Vadose Zone SoilMPRGDSPAKAHQYYEYLQSHQQTWQVPATWHVKWLDLAWLWGFLVALGLIILWW
Ga0157302_1006545913300012915SoilMPSGSSPEKAEQFYHYLQSHQLTMQRAATWHVRWLD
Ga0137407_1025184933300012930Vadose Zone SoilMPSGDSPAKAHQYYEYLQSHQQTLEAPATWHVHWLDLAWLWGFLLALAVIILWWLGQYR
Ga0162651_10003845113300012938SoilMPSGESPEHAQQYYQYLQGHKETMYRADTWHVHWIDLAWLWG
Ga0164300_1018503033300012951SoilMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLW
Ga0164300_1110455013300012951SoilMPSGDSPAKAQAYYHYLNAHQLSMQRPATWEVRWVDLAWLWGFVIVLSLVLILW
Ga0164303_1037507133300012957SoilMPSGDSPAKAQAYYHYLNAHQLTMQRPATWEVRWLDLAWLWGFAIALSVVILPWD*
Ga0164299_1118131533300012958SoilMPSGDSPAKAQAYYHYLNAHQLTMQRPATWEVRWHDLAWLWGFAIALSVI
Ga0164302_1093723413300012961SoilMTRRSGPMGMPSCDSPAKAHQYYEYLQSHDQTMQVPATWHVH
Ga0134110_1018155313300012975Grasslands SoilMGIPSGDSPHKAQQYYHYLQGHQETMQRPDTWHVHWLDLAWL
Ga0157371_1029469913300013102Corn RhizosphereMPSGSSPEKSQQFYHYLQAHQLTMQKADTWHVRWMDLAWLWGFVIVLSLAIRFGLGFDAP
Ga0120111_100568153300013764PermafrostMPSGDSPQHAQQYYHYLQAHQESMQRPATWHVHWIDLAWLWGFVIALSLLL*
Ga0134079_1030808733300014166Grasslands SoilMGMPSGDSPAKAHQYYEYLQSHQQTQQVPATWHVRWLDLAWLWGFLIVLSLIII*
Ga0173478_1073712723300015201SoilMGIPSGDSPQKAQQYYHYLQGHQETLQRADTWHVHWIDLAWLWGFLIVLILTILLW
Ga0137412_1088138933300015242Vadose Zone SoilMPRGDSPAKAHQYYEYLQSHQQTWQAPATWHIKWLDLAWLW
Ga0137403_1033395813300015264Vadose Zone SoilMPSGDSPAKAHQYYEYLQSHQQTFQAPATWHVHWLDLAWLWG
Ga0134083_1034839213300017659Grasslands SoilMGMPSGDSPEKAQQYYHYLQGHQETFYRAATWHVHWLDLAWLWGFLIVLTLAILLWMWQ
Ga0184608_1026021413300018028Groundwater SedimentMGMPSGESPEHAQQYYQYLQAHKETMYRADTWHVHWIDLA
Ga0184620_1002510333300018051Groundwater SedimentMGMPSGESPEHAQQYYQYLQAHKETMYRADTWHVHWIDLAWLWGFAIALVVVILL
Ga0184640_1035192113300018074Groundwater SedimentMGMPSGESPQHAHQYYQYLQAHKETMQRADTWHVQWIQLAWLW
Ga0066667_1078670513300018433Grasslands SoilMGMPSGDSPAKAHQYYEYLQSHSQTMQPPATWHVRWLDLAWLWGFLVALALI
Ga0066667_1203127223300018433Grasslands SoilMGMPSGESPEKAQQYYNYLQGHSETHYRAATWHVHWLDLAWLWGFLIVLALATLLWIWQY
Ga0066669_1193440533300018482Grasslands SoilMGLPSASLTSGDTPDKAQRFYHYLQGHQETPERAATWHVRWVDLAWLWGFMIVI
Ga0193701_109574713300019875SoilMGMPSGESPEHAQQYYQYLQAHKETMYRADTWHVHWIDLAWLWGFAIAL
Ga0222625_148167933300022195Groundwater SedimentMGMPSGGSPEDVRQYYLYLQGHQETMQRAATWHVHWV
Ga0247791_102755813300023062SoilMRMPSGDSPQKAQAYYHYLQAHQETMQRAATWEVRWIDLAWLWGFAI
Ga0207710_1075668013300025900Switchgrass RhizosphereMGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFLIAL
Ga0207671_1029880713300025914Corn RhizosphereMGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLNWLWG
Ga0207709_1156388433300025935Miscanthus RhizosphereMGMPSGDSPAKAQAYYHYLNAHQLTMQRPATWEVRWLDLAWLWGFAIA
Ga0209236_126724233300026298Grasslands SoilMGMPSGDSPAKAHQYYEYLQSHDQTLQVPATWHVHWLDLAWLWGFLLALAVIIL
Ga0209057_118677613300026342SoilMGLPMMGMPSGDTPDKARQYYLYLQGHQETMQRAATWHVRWLDLA
Ga0209156_1021037713300026547SoilMGIPSGDTPSKAQAYYHYLQAHQESLQAPNTWTVRWLDLAWLWGFVAVLCVVVLL
Ga0209156_1033379113300026547SoilMGMPSGDSPGKAQAYYDYLQAHQQTMQHPDTWHVRWVDLAWLWGFVIV
Ga0208475_101246013300027018SoilMAMPSGDFDSPAKVTKYYDYLQAHSQTFQKPDTWHVHWLDLAWLWGFLIV
Ga0207636_100697513300027479SoilMRMPSGDSPQKAQAYYHYLQAHQETMQRAATWEVRWIDLAWLWG
Ga0209983_105688613300027665Arabidopsis Thaliana RhizosphereMGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWG
Ga0307276_1007499033300028705SoilMGMPSGEAPAKAHQYYEYLQSHQQTMQDPATWHVRWLDLAWL
Ga0307322_1015784633300028710SoilMGMPSGDSPAKAQAYYHYLNAHQLSMQRPATWEVRWLDLAWLWGFAIALSVITLLWI
Ga0307311_1018779213300028716SoilMGMPSGESPQHAQQYYQYLQAHKETMQHADTWHVQWIQL
Ga0307311_1021233633300028716SoilMGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFLVALVVIILW
Ga0307301_1002786833300028719SoilMGMPSGDSPAKAHQYYEYLQSHQQTMQVPATWHVHWLDLAWLWGFLVALAVI
Ga0307301_1008222533300028719SoilMRMPSGESPEHARQYYLYLQGHQETMQRAASWHVHWLDLAWLWGFLIALALAT
Ga0307301_1008274433300028719SoilMGMPSGDSPATARHYYEYLQAHQQSMQDPATWHVRWI
Ga0307317_1011490313300028720SoilMGMPSGDSPAKAHQYYEYLQSHQQTMQVPATWHVHWLDLAWLWGFLVALA
Ga0307315_1013297733300028721SoilMGMPSGDSPAKAHQYYEYLQSHQQTMQVPATWHVHWLDLAWLWGFLLAL
Ga0307315_1018658133300028721SoilMGMPSGDSPAKAQAYYHYLNAHQLSMQRPATWEVRWLDLA
Ga0307319_1031362033300028722SoilMGMPSGESPQHALQYYHYLQGHQETQYRAATWHVHWLD
Ga0307282_1003758243300028784SoilMGMPSGESPEHAQQYYQYLQAHKETMYRADTWHVHWIDLAWLWGFAIALVVIGR
Ga0307282_1035002113300028784SoilMGMPSGESPAKAHQYYEYLQSHQQTMQAPATWHVRWLDLAW
Ga0307284_1016010433300028799SoilMGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFLVAL
Ga0307284_1025825633300028799SoilMGMPNGESPAKAHQYYEYLQSHQQTLQSPATWHVRW
Ga0307289_1005973133300028875SoilMGMPSGDSPAKAQAYYHYLNAHQLTMQRPATWEVRWHD
Ga0307300_1018159133300028880SoilMGMPSGESPQHAQQYYQYLQAHKETMQRADTWHVQWIQLAWLWGFVIALVVVI
Ga0307277_1024921133300028881SoilMGMPSGESPAKAHQYYEYLQSHQQTMQDPATWHVRWLDL
Ga0307308_1009924813300028884SoilMPIPSGDSPQQVDRYYNYLQGHQETMQSAATWHVHWVDLAWLW
Ga0308198_101021433300030904SoilMGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLA
Ga0308189_1010138913300031058SoilMGMPSGESPQHAQQYYQYLQAHKETMQRADTWHVQWIQLAWLWGFVIALVV
Ga0308187_1008780913300031114SoilMGMPSGESPQHAQQYYQYLQAHKETMQRADTWHVQWIQL
Ga0307500_1025494633300031198SoilMGMPSGESPQHAQQYYQYLQAHKETMQRADTWHVQWIQLAWLWG
Ga0308175_10209478813300031938SoilMTRAPSSMPSGESPQHARRFYDYLQSHQETMYRPDTWHVRWVDLAWLWGFLIVLAAVLLW


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