Metagenome / Metatranscriptome Family F091725

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091725
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	56 residues
Representative Sequence	GTKVKFLEDQFGRIVLQPITEDYIDRVMGCLADGPDLLANWEVEHREEGEQES
Number of Associated Samples	97
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	16.04 %
% of genes near scaffold ends (potentially truncated)	78.50 %
% of genes from short scaffolds (< 2000 bps)	85.98 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.196 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil (10.280 % of family members)
Environment Ontology (ENVO)	Unclassified (17.757 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.551 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.16% β-sheet: 12.35% Coil/Unstructured: 60.49%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01850	PIN	67.29
PF01293	PEPCK_ATP	1.87
PF01750	HycI	1.87
PF00291	PALP	1.87
PF04014	MazE_antitoxin	1.87
PF01797	Y1_Tnp	0.93
PF01728	FtsJ	0.93
PF00082	Peptidase_S8	0.93
PF02779	Transket_pyr	0.93
PF03745	DUF309	0.93
PF03030	H_PPase	0.93
PF01638	HxlR	0.93
PF03447	NAD_binding_3	0.93
PF13581	HATPase_c_2	0.93
PF01300	Sua5_yciO_yrdC	0.93
PF04191	PEMT	0.93
PF03544	TonB_C	0.93
PF13180	PDZ_2	0.93
PF05598	DUF772	0.93
PF08281	Sigma70_r4_2	0.93
PF00891	Methyltransf_2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0680	Ni,Fe-hydrogenase maturation factor	Energy production and conversion [C]	1.87
COG1866	Phosphoenolpyruvate carboxykinase, ATP-dependent	Energy production and conversion [C]	1.87
COG0293	23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ	Translation, ribosomal structure and biogenesis [J]	0.93
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1189	Predicted rRNA methylase YqxC, contains S4 and FtsJ domains	Translation, ribosomal structure and biogenesis [J]	0.93
COG1547	Predicted metal-dependent hydrolase	Function unknown [S]	0.93
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.93
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.93
COG3808	Na+ or H+-translocating membrane pyrophosphatase	Energy production and conversion [C]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.20 %
Unclassified	root	N/A	2.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.20 %
Unclassified	root	N/A	2.80 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.20 %
Unclassified	root	N/A	2.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	73.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.74 %
Unclassified	root	N/A	2.80 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	64.49 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	8.41 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3.74 %
Unclassified	root	N/A	2.80 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	64.49 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	8.41 %
Unclassified	root	N/A	2.80 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1.87 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	64.49 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7.48 %
Unclassified	root	N/A	2.80 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1.87 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	64.49 %
Unclassified	root	N/A	2.80 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.87 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1.87 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.93 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	64.49 %
Unclassified	root	N/A	2.80 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.87 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1.87 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	0.93 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	64.49 %
Unclassified	root	N/A	2.80 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.87 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1.87 %
Acidobacterium sp. S8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	0.93 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101132417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300002568\|C688J35102_118600659	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300003219\|JGI26341J46601_10097049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	863	Open in IMG/M
3300003368\|JGI26340J50214_10105533	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720	Open in IMG/M
3300004080\|Ga0062385_10862506	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300004139\|Ga0058897_10469661	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	887	Open in IMG/M
3300004152\|Ga0062386_100030737	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3985	Open in IMG/M
3300004152\|Ga0062386_100321709	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300004152\|Ga0062386_101206515	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300004152\|Ga0062386_101676483	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300004152\|Ga0062386_101835802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300005187\|Ga0066675_11178525	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300005436\|Ga0070713_101516254	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300005557\|Ga0066704_10725636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	624	Open in IMG/M
3300005568\|Ga0066703_10523590	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	701	Open in IMG/M
3300005994\|Ga0066789_10335489	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	632	Open in IMG/M
3300005995\|Ga0066790_10041906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1987	Open in IMG/M
3300006031\|Ga0066651_10199543	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300006794\|Ga0066658_10770740	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300006796\|Ga0066665_10588387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	897	Open in IMG/M
3300009012\|Ga0066710_100421338	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1995	Open in IMG/M
3300009012\|Ga0066710_102295779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	785	Open in IMG/M
3300009522\|Ga0116218_1006099	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5605	Open in IMG/M
3300009522\|Ga0116218_1225010	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	844	Open in IMG/M
3300009552\|Ga0116138_1179386	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300009623\|Ga0116133_1021748	All Organisms → cellular organisms → Bacteria	1588	Open in IMG/M
3300009635\|Ga0116117_1121284	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300009639\|Ga0116122_1066992	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300009683\|Ga0116224_10078856	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1602	Open in IMG/M
3300009698\|Ga0116216_10001800	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14516	Open in IMG/M
3300009698\|Ga0116216_10892268	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300010304\|Ga0134088_10506216	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595	Open in IMG/M
3300010337\|Ga0134062_10437074	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300010341\|Ga0074045_10347563	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	967	Open in IMG/M
3300010341\|Ga0074045_10547944	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	741	Open in IMG/M
3300010379\|Ga0136449_100751627	All Organisms → cellular organisms → Bacteria	1623	Open in IMG/M
3300011271\|Ga0137393_11709731	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300012096\|Ga0137389_11432752	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300012205\|Ga0137362_10709016	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	864	Open in IMG/M
3300012582\|Ga0137358_10961937	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300012929\|Ga0137404_10264777	Not Available	1480	Open in IMG/M
3300012930\|Ga0137407_10541549	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300012975\|Ga0134110_10399589	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300012976\|Ga0134076_10205792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	827	Open in IMG/M
3300014152\|Ga0181533_1073738	All Organisms → cellular organisms → Bacteria	1627	Open in IMG/M
3300014199\|Ga0181535_10254282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1059	Open in IMG/M
3300014499\|Ga0182012_10009392	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9584	Open in IMG/M
3300015052\|Ga0137411_1253063	All Organisms → cellular organisms → Bacteria	1933	Open in IMG/M
3300016270\|Ga0182036_11342450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300017822\|Ga0187802_10140685	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	919	Open in IMG/M
3300017955\|Ga0187817_10563951	Not Available	726	Open in IMG/M
3300017999\|Ga0187767_10182078	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300018006\|Ga0187804_10602423	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300018038\|Ga0187855_10710365	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	586	Open in IMG/M
3300018085\|Ga0187772_11479739	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300018088\|Ga0187771_10527108	All Organisms → cellular organisms → Bacteria → Acidobacteria	1000	Open in IMG/M
3300018433\|Ga0066667_10682911	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	860	Open in IMG/M
3300021478\|Ga0210402_11179724	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300022557\|Ga0212123_10021676	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7245	Open in IMG/M
3300024176\|Ga0224565_1026209	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	646	Open in IMG/M
3300025412\|Ga0208194_1040053	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M
3300025910\|Ga0207684_10507360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1034	Open in IMG/M
3300026294\|Ga0209839_10165915	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300026315\|Ga0209686_1023614	All Organisms → cellular organisms → Bacteria	2421	Open in IMG/M
3300026547\|Ga0209156_10406414	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300026555\|Ga0179593_1031471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2048	Open in IMG/M
3300026555\|Ga0179593_1245634	All Organisms → cellular organisms → Bacteria	2503	Open in IMG/M
3300026869\|Ga0207821_1001449	All Organisms → cellular organisms → Bacteria	3155	Open in IMG/M
3300026934\|Ga0207816_1042346	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300027024\|Ga0207819_1019544	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300027604\|Ga0208324_1008978	All Organisms → cellular organisms → Bacteria	3312	Open in IMG/M
3300027667\|Ga0209009_1037910	All Organisms → cellular organisms → Bacteria	1196	Open in IMG/M
3300027773\|Ga0209810_1301192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300027812\|Ga0209656_10109884	All Organisms → cellular organisms → Bacteria	1435	Open in IMG/M
3300027812\|Ga0209656_10496820	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300027824\|Ga0209040_10262841	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300027853\|Ga0209274_10053950	All Organisms → cellular organisms → Bacteria	1913	Open in IMG/M
3300027875\|Ga0209283_10925245	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	525	Open in IMG/M
3300028748\|Ga0302156_10422033	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300028792\|Ga0307504_10479155	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300028866\|Ga0302278_10078763	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1907	Open in IMG/M
3300028874\|Ga0302155_10416018	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300029636\|Ga0222749_10413265	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	717	Open in IMG/M
3300029883\|Ga0311327_10816129	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300029989\|Ga0311365_10045563	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3748	Open in IMG/M
3300029999\|Ga0311339_11927458	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300030002\|Ga0311350_11196731	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300030053\|Ga0302177_10157054	All Organisms → cellular organisms → Bacteria	1277	Open in IMG/M
3300030114\|Ga0311333_10171438	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1671	Open in IMG/M
3300030399\|Ga0311353_11256881	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300030943\|Ga0311366_10064130	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3161	Open in IMG/M
3300031446\|Ga0170820_12134164	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1366	Open in IMG/M
3300031681\|Ga0318572_10557764	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300031708\|Ga0310686_106805350	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2282	Open in IMG/M
3300031754\|Ga0307475_10386115	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1125	Open in IMG/M
3300031823\|Ga0307478_10106266	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2182	Open in IMG/M
3300031879\|Ga0306919_11274081	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300031962\|Ga0307479_10648419	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300032174\|Ga0307470_11180784	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	620	Open in IMG/M
3300032783\|Ga0335079_11923223	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300032828\|Ga0335080_10671528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1083	Open in IMG/M
3300032892\|Ga0335081_10625111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1323	Open in IMG/M
3300032893\|Ga0335069_12697929	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300032954\|Ga0335083_10227772	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1683	Open in IMG/M
3300034091\|Ga0326724_0662870	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300034282\|Ga0370492_0310928	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.50%
Aquatic	Environmental → Aquatic	21.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.36%
Freshwater	Environmental → Aquatic → Freshwater	20.56%
Peat	Environmental → Terrestrial → Peat	11.21%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.06%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	20.56%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.02%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.21%
Loam	Environmental → Terrestrial → Soil → Loam	10.28%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.43%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	13.08%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.21%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.28%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.28%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.54%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.67%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.74%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.87%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	10.28%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.35%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.54%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.74%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	3.74%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.80%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.87%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.93%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024176	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU1	Environmental	Open in IMG/M
3300025412	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026869	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 53 (SPAdes)	Environmental	Open in IMG/M
3300026934	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 10 (SPAdes)	Environmental	Open in IMG/M
3300027024	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 42 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027773	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300028874	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029989	III_Fen_N1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030943	III_Fen_N2 coassembly	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1011324172	3300002245	Forest Soil	VRFLEDQFGRIVLQPITEQYVDRVMGCLASGPDLLEKWEKEHREEGERDR*
C688J35102_1186006591	3300002568	Soil	VPAELRRKHGIEAGTKVKFLEDQFGRIVLQPVSDEYIDRLMGCLANGPDLLGAWEKEHREEK*
JGI25617J43924_100018646	3300002914	Grasslands Soil	KHGIEAGTRVKFLEDHFGRIILQPITEGYISRVRGCLASAGLNLLESWEAEHRAEGEKDKF*
JGI26341J46601_100970491	3300003219	Bog Forest Soil	EAGTRVKFLEDQFGRIVLQPITEEYIDRVMGCLAEGADLLADWEKEHRAESKGER*
JGI26340J50214_101055332	3300003368	Bog Forest Soil	TRVKFLEDQFGRIVLQPVTEEYIDRVMGCLAEGADLLADWEREHRAEGKGER*
Ga0062385_108625062	3300004080	Bog Forest Soil	VIPAELRRKHRIQAGTRVKLLEDGLGRIVLQPMTEEHIDRALGLLAGGPDLLATWENEHRDEGEHDK*
Ga0058897_104696613	3300004139	Forest Soil	HGIAAGTRVKLLEDQFGRIVLQPLTEEYVDRVMGCLADGPDLLANWEKEHREEGEHDR*
Ga0062386_1000307374	3300004152	Bog Forest Soil	VELRRKHKIRAGTKVMFLEDQLGRIVLQPLTEDYIDRVMGMFADGPDLLASWEKEHREEGKHDK*
Ga0062386_1003217091	3300004152	Bog Forest Soil	HGIQAGTKVKFLEDQFGRIVLQPLTDEYIDRVMGFLADGPDLLANWEKEHREEGERDK*
Ga0062386_1012065152	3300004152	Bog Forest Soil	FLEDEFGRIVLQPITGDYVDRVMGCLAEGADLLANWEEEHHREGKREK*
Ga0062386_1016764832	3300004152	Bog Forest Soil	FLEDEFGRIILQPVTEECIRRARGYLAGGPDYLAIWEKEHRAEGKRRK*
Ga0062386_1018358022	3300004152	Bog Forest Soil	KIEAGTKVKFLEDQFGRIVLQPITEEFIDRVRGFLADGPDLLAIWEKEHREEGKHDK*
Ga0066675_111785252	3300005187	Soil	ICAGTKVKFLEDQFGRIVLQPVTDEYVDRIMGVLADGPDLLAGWEAEHRKEGEVEP*
Ga0070713_1015162542	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LEDQFGRIVLQPVTDEYIDRLMGCLDEGPDLLANWEKEHREEK*
Ga0066704_107256361	3300005557	Soil	KHGIEAGTKVKFLEDQFGRIVLQPITEDYVDRVMGCLAEGPDLLAKWEKEHREEGKHEP*
Ga0066703_105235902	3300005568	Soil	MKNFVLVYVEAPPVIPAALRRKHEIEAGILEDQFGRIVLQPITEDYIEGVMGCLVGRDDLLASWEKEHRAEGKHDR*
Ga0066789_103354891	3300005994	Soil	LEDQFGRIVLQPITADYIDRIMGCLAEGPDLLAAWEREHREEGKRAK*
Ga0066790_100419061	3300005995	Soil	VPVELRRKHKIKAGTKVNFLEDQYGRIILQPITDDYIDRVMGMLADGPDMLASWEKEHREEGKHDK*
Ga0066651_101995431	3300006031	Soil	KVKFLEDQFGRIVLQPITEAYIDRVMGCLADGPDLLEKWRDEHRREGKREP*
Ga0066658_107707401	3300006794	Soil	KVKFLEDQFGRIVLQPITEDYIDRVMGCLADGPDLLEKWRDEHRQEGKREP*
Ga0066665_105883872	3300006796	Soil	VVPAELRRKHGIAAGTKVKFLEDQFGRIVLQPISEAYIDRVMGCLADGPDLLEKWRDEHRREGKREP*
Ga0066710_1004213383	3300009012	Grasslands Soil	IAAGTKVRFLEDDFGRIILQPITEDYIDRVMGCLAGSNLLETWEVEHRREGKRRG
Ga0066710_1022957793	3300009012	Grasslands Soil	EDQFGRIVLQPITEAYIDRVMGCLADGPDLLEKWRDEHRQEGKRKP
Ga0116218_10060993	3300009522	Peatlands Soil	VIPAALRRKHKIEAGTRVKFLEDQFGRIVLQPLTEEYIDRVMGFLADGPDLLAGWEKEHREEGKRDK*
Ga0116218_12250101	3300009522	Peatlands Soil	VELRRKHKIEAGTKVKFLEDQFGPIVLQPITEEFIGRVRGFLADGPDQLAIWEKEHREE
Ga0116138_11793862	3300009552	Peatland	QLVIPVELRRKHKIKAGTKIQLLEDQFGRIVLQPLTEDYIDKVMGMLADGPDLLASWEKEHREEGKHDK*
Ga0116133_10217482	3300009623	Peatland	VLPAALRRKHKIEAGTKVKFLEDQFGRIVLQPLTEDYINRVRGLLADGPDLLAIWEKEHREEGKHDK*
Ga0116117_11212841	3300009635	Peatland	KHKIEAGTKVKILEDQFGRIVLQPITGEYIDRVQGLLADGPDLLALWKKEHREEGKRDK*
Ga0116122_10669921	3300009639	Peatland	LRRKHKIQAGTKVKFLEDQLGRIVLQPLTEDYIDRVMGLFADGPDLLASWEKEHREEGKHDK*
Ga0116224_100788563	3300009683	Peatlands Soil	DQFGRIVLQPVTEEYIDRVMGCLANGPDLQANWQREHREEDERDR*
Ga0116216_100018001	3300009698	Peatlands Soil	FLEDQFGRIVLQPVTEEYIDRVMGCLANGPDLQANWQREHREEDERDR*
Ga0116216_108922682	3300009698	Peatlands Soil	LEDQFGRIVLQPITEEYIDRVMGLFACGPDLLASWKKEHREEGKRDK*
Ga0134088_105062161	3300010304	Grasslands Soil	VIPAELRRRHRIEAGTKVRFLEDQFGRIALQPITEAYVDRIMGCLADGPDLLAKWEIEHREEGEREL*
Ga0134062_104370741	3300010337	Grasslands Soil	DQFGRIVLQPITEAYIDRVMGCLADGPDLLEKWRDEHRREGKREP*
Ga0074045_103475633	3300010341	Bog Forest Soil	KFLEDEFGRIVLQPITGDYVDRVMGCLAEGADLLANWEEEHHREGKREK*
Ga0074045_105479443	3300010341	Bog Forest Soil	RRKHGIEAGTKVKFLEDQFGRIVLQPLTEDYIDRVMGCLAEGADLLADWEKEHRAEGKRQR*
Ga0136449_1007516273	3300010379	Peatlands Soil	VELRRKHKIEAGTKVKFLEDQFGRIVLQPITEEFIDRVRGFLADGPDLLAIWEKEHREEGKHDK*
Ga0137393_117097311	3300011271	Vadose Zone Soil	LRRKHKIQAGTKVKILEDQFGRIVLQPLTVEYNDRVRGLLADGPDLLALWEKEHREEGEHDK*
Ga0137389_114327521	3300012096	Vadose Zone Soil	DQFGRIILQPITEDYVDRVMGCLASGPDLLANWEKEHQGEGDEDR*
Ga0137362_107090163	3300012205	Vadose Zone Soil	GTKVKFLEDQFGRIVLQPITEDYIDRVMGCLADGPDLLANWEVEHREEGEQES*
Ga0137358_109619371	3300012582	Vadose Zone Soil	KFLEDQFGRIVLQPITEDYIDRVMGCLADGPDLLANWEVEHREEGEQES*
Ga0137404_102647772	3300012929	Vadose Zone Soil	MSAMKGFLEDQFGTRSAAIAEDYVDRVMGYLAEGPDLLAKWEIEHREEGEREL*
Ga0137407_105415491	3300012930	Vadose Zone Soil	KFLEDQFGRIVLQPVTEDYVDRVMGCLSEGPDLLGKWEVEHRKEGEHK*
Ga0134110_103995892	3300012975	Grasslands Soil	EAGTKVRFLEDEFGRIILQPVTEDYIHRIRGCLAGGHLLETWETEHRLEGKRRG*
Ga0134076_102057921	3300012976	Grasslands Soil	GTKVKFLEDQFGRIVLQPITEAYIDRVMGCLADGPDLLEKWRDEHRREGKREP*
Ga0181533_10737384	3300014152	Bog	EDQFGRIVLQPITEEYIDRVMGLFAGGPDLLASWEKEHRKEGEHDK*
Ga0181535_102542823	3300014199	Bog	IEAGTRVKFIEDQFGRIVLQPITEDYIDRVMGCLADGTDLTAIWEKEHREEGKRAK*
Ga0182012_100093926	3300014499	Bog	VIPAELRRKHKIEAGTKVKFLEDQFGRIVLLPVTEDYIDRVRGFLAEGPDLLAIWEKEHRLEDERDK*
Ga0137411_12530632	3300015052	Vadose Zone Soil	VKFLEDQFGRIVLQPITEDYVDRVMGCLADGADLLAKWEIEHREEGERES*
Ga0182036_113424501	3300016270	Soil	AGTKVKFLEDAFGRIVLQPITENYIDRVMGCLEEGPDLLAEWEKDHRSEGRRER
Ga0187802_101406851	3300017822	Freshwater Sediment	RRKHGIEAGTKVKFLEDQFGRIVLQPITEAYIDRVMGLFADGPDLLAIWEKEHRKAGKHD
Ga0187817_105639511	3300017955	Freshwater Sediment	PAELRRKHKIAAGTKVKVLEDRFSRIVLQPVAEDYVDRVMGLLADGPDLLAIWEKEHREEDKRDK
Ga0187767_101820783	3300017999	Tropical Peatland	RRKHRISAGTKVKFLEDQFGRIVLQPITEDYVDRVMGCLSDGPDLFAQWQSEHRREDKFE
Ga0187804_106024231	3300018006	Freshwater Sediment	QAGTKVKFLEDQFGRIVLQPITDEYIGRVRGLLADGPDLLAIWEREHRKEGKHDR
Ga0187855_107103652	3300018038	Peatland	VIPAELRRKHKIEAGTKVKFLEDQFGRIMLQPITEDYIDRVMGMLSDGPDLLAMWEKEHR
Ga0187772_114797392	3300018085	Tropical Peatland	VPAALRRKHGIEAGTKVKFLEDQFGRIILQPITESYVDRVMGCLADGPDLLAEWESEHRREGGQQP
Ga0187771_105271082	3300018088	Tropical Peatland	VRFLEDRFGRIVLQPVTEDYVDRVMGCLAEGPDLLAKWEKEHRREGER
Ga0066667_106829112	3300018433	Grasslands Soil	RKHGIQAGTRVKFLEDEFGRIILQPITDEYIDRLMGCLADGPDLLAEWTKEHRREGKRDR
Ga0210402_111797241	3300021478	Soil	LQPITEDYVDRVQGCLADGPNLLAKWEVEHRKEGAGDGAGKHQL
Ga0212123_100216768	3300022557	Iron-Sulfur Acid Spring	AGTKVRMLEDQFGRIVPQPLTEDYVDRVMGLLADGPDLLAIWEKEYREEGEHDK
Ga0224565_10262091	3300024176	Plant Litter	KILEDQFGRIVLQPITDEYIDRVRGLLADGPDLLASWEKDHREEGEHDK
Ga0208194_10400531	3300025412	Peatland	IKAGTKVCFLEDQFGRIILQPITEDYIARVRGCLAGGPELVKSWLREHREEGERRG
Ga0207684_105073601	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	TKVKFLEDQFGRIVLQPITEAYIDRVMGCLADGPDLLEKWRDEHRQEGKREP
Ga0209839_101659152	3300026294	Soil	LVIPVELRRKHKIEAGTKVRFLEDQFGRIILQPITEEYIDRVMGMFAGGPDLLAIWEKEHREEGKHDK
Ga0209686_10236144	3300026315	Soil	HGIAAGTKVKFLEDQFGRIVLQPITEAYIDRVMGCLADGPDLLEKWRDEHRREGKREP
Ga0209156_104064141	3300026547	Soil	ICAGTKVKFLEDQFGRIVLQPVTDEYVDRIMGVLADGPDLLAGWEAEHRKEGEVEP
Ga0179593_10314711	3300026555	Vadose Zone Soil	QAGTKVRFLEDQFGRIVLQPITEDYVDRVMGCLADGPDLLARWEIEHREEGERES
Ga0179593_12456343	3300026555	Vadose Zone Soil	LRRKHRIEAGTKVKILEDQFGRIVLQPITDEYIDRVRGLLAHGPDLQAVWEKEHREEGKHDK
Ga0207821_10014494	3300026869	Tropical Forest Soil	GTRVKFLEDAFGRIVLQPITEDYIDRVMGCLAEGPDLLADWQKEHRLEGER
Ga0207816_10423462	3300026934	Tropical Forest Soil	AGTRVKFLEDAFGRIVLQPITEDYIDRVMGCLAEGPDLLVEWQKEHRREDKRDR
Ga0207819_10195441	3300027024	Tropical Forest Soil	AGTRVKFLEDAFGRIVLQPITEDYIDRVMGCLAEGPDLLADWQKEHRLEGER
Ga0208324_10089785	3300027604	Peatlands Soil	VIPAALRRKHKIEAGTRVKFLEDQFGRIVLQPLTEEYIDRVMGFLADGPDLLAGWEKEHREEGKRDK
Ga0209009_10379103	3300027667	Forest Soil	KHKIEAGTKVHILEDQFGRIVLQPITDDYIDRVRGLLAHGPDLLAMWEKEHREEGKHDK
Ga0209810_13011921	3300027773	Surface Soil	AELRRKHGIEAGTRVNFLEDQFGRIVLQPVTEEYVDRVRGCLADGPDLAASWEQEHREEREHER
Ga0209656_101098841	3300027812	Bog Forest Soil	EAGTRVKFLEDEFGRIVLQPITGDYVDRVMGCLADGADLLANWEEEHRREGKREK
Ga0209656_104968201	3300027812	Bog Forest Soil	EDEFGRIVLQPITGDYVDRVMGCLAEGADLLANWEEEHHREGKREK
Ga0209040_102628413	3300027824	Bog Forest Soil	AGTRVKFLEDQFGRIVLQPITEEYIDRVMGCLAEGADLLADWEKEHRAESKGER
Ga0209274_100539502	3300027853	Soil	LEDQFGRIVLQFLTEDYVDRVMGMLANGRDLLASWEKEHREEGKHDK
Ga0209283_109252453	3300027875	Vadose Zone Soil	AGTRVKFLEDHFGRIILQPITEEYIDRVMGCLASGPDMLANWEKEHRSEGEHDR
Ga0302156_104220332	3300028748	Bog	AKIIEDQFGRIVLQPLTVDYIDRVRGLLADGPDLPALWEKEHREEGETRPTWGRQS
Ga0307504_104791551	3300028792	Soil	KFLEDQFGRIVLQPITEDYVDRVMGCLAEGPDLLPKWENEHRKEGEREP
Ga0302278_100787634	3300028866	Bog	VIPAALRRKHKIQAGTKAKIIEDQFGRIVLQPLTVDYIDRVRGLLADGPDLPALWEKEHREEGETRPTWGRQS
Ga0302155_104160181	3300028874	Bog	ELRRKHKIEAGTKVRILEDHLGRIVLQPITVDYIDRVRGMLADGPDLLALWEKEHREEGKHDK
Ga0222749_104132651	3300029636	Soil	KVKILEDQFGRIVLQPLTDDYIDRVMGLLADGPDLLALWEKEHREEGEHDK
Ga0311327_108161291	3300029883	Bog	GTKVKILEDQFGRIVLQPITGEYIDRVQGLLADGPDLLALWEKEHREEGKRDK
Ga0311365_100455635	3300029989	Fen	FSEDQFGRIVLQPITEEYLDRVMGCLAGGPDLVSEWAREHRAEGEHEK
Ga0311339_119274581	3300029999	Palsa	KVCFLEDQFGRIILQPITEEYIARVRGCLAGGPELVKSWLREHREEGERRG
Ga0311350_111967312	3300030002	Fen	RAGTKVRFSEDQFGRIVLQPITEEYLDRVMGCLAGGPDLVSEWAREHRAEGEHEK
Ga0302177_101570543	3300030053	Palsa	IEAGTKVKFLEDQLGRIVLQPITEEYIDRVMGMFADGPDLLASWEKEHREEGKHDK
Ga0311333_101714383	3300030114	Fen	IEAGTRVKFLEDQFGRIVLQPITVDYVDRVMGCLEEGADLLANWEKEHRAEGKREK
Ga0311353_112568811	3300030399	Palsa	VIPAALRRKHGIQAGTKVRFLEDQFGRIILQPITEQYIDRVMGCLAGGPDLLESWEKEHREEGEHDS
Ga0311366_100641301	3300030943	Fen	RKHGIEAGTRVKFLEDQFGRIVLQPITEDYVDRVRGCLSSGVDLLEKWNVEHREEGEREP
Ga0170820_121341642	3300031446	Forest Soil	VRKHGIEAGTRVRFLEDRFGRIVLQRITHDYIDRVMGCLAECPDLVGEWQREHRAEGKRE
Ga0318572_105577641	3300031681	Soil	LEDEFGRIVLQPITEDYIDRLMGCLQEGPDLLAEWERDHRSEGRRER
Ga0310686_1068053504	3300031708	Soil	VIPVELRRKHKIKAGTKIRLLEDQFGRIVLLPLTEDYIDRVRGMLADGPDLLASWEKEHREEGKHDK
Ga0307475_103861151	3300031754	Hardwood Forest Soil	VITAALRREHEIEAGIKVKILEDQFGRIVLQPITEDYIDGVMGCLVGREDLLANWEKEHRAEGKHDR
Ga0307478_101062663	3300031823	Hardwood Forest Soil	AGTKVTILEDQFGRIVLQPVTDEYIDRVMGMLADGPDLLAKWEKEHREEGEHDK
Ga0306919_112740812	3300031879	Soil	AGTKVQFLEDQFGRIVLQPITEEYINRVMGCLAGGPDYLAIWEREHRTEGRRDK
Ga0307479_106484193	3300031962	Hardwood Forest Soil	RRKHGIAAGTRVKLLEDQFGRIVLQPLTEEYVDRVMGCLADGPDLLANWEKEHREEGEHD
Ga0307470_111807841	3300032174	Hardwood Forest Soil	ILEDQFGRIVLQPVTDEYIDRVMGMLADGPDLLAHWEKEHREEGEHDK
Ga0335079_119232231	3300032783	Soil	FLEDQFGRIVLQPITEEYIDRVMGCLADGPDLLAAWEKDHREEGARNK
Ga0335080_106715281	3300032828	Soil	VKFLEDQFGRIVLQPITEEYIDRVMGCLADGPDLLAAWEKDHREEGARNK
Ga0335081_106251113	3300032892	Soil	FLEDQFGRIVLQPITEDYVDRVKGCLAEGSDLLAARGKEHRKEGEHDR
Ga0335069_126979292	3300032893	Soil	HRIKAGTKVKFLEDQYGRIVLQPISEEYIDRVMGCLQGGRDLVAEWTHEHREEGEHDL
Ga0335083_102277723	3300032954	Soil	KFLEDEFGRIVLQPITEVYIDRVMGCLEEGPDLLAEWEKEHRSEGRRER
Ga0326724_0662870_352_495	3300034091	Peat Soil	LEDQFGRIVLLPVTEDYIDRVRGFLAEGPDLLAIWEKEHRLEGERDK
Ga0370492_0310928_491_637	3300034282	Untreated Peat Soil	ICEDQFGRIVLQPITDDYIDRVMGLLADGPDLLAIWEMEHREEGKHDK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091725

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences