Metagenome Family F091700

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091700
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	64 residues
Representative Sequence	KSLMAKALQGDVRATTALLALYARVISEPPEDESGSVEEHELLILRRFGPRLLKSLAKKEAGK
Number of Associated Samples	90
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.41 %
% of genes near scaffold ends (potentially truncated)	85.05 %
% of genes from short scaffolds (< 2000 bps)	94.39 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.243 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.626 % of family members)
Environment Ontology (ENVO)	Unclassified (28.972 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.551 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.65% β-sheet: 0.00% Coil/Unstructured: 48.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF03237	Terminase_6N	14.95
PF01555	N6_N4_Mtase	3.74
PF02195	ParBc	1.87
PF00575	S1	0.93
PF00107	ADH_zinc_N	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0863	DNA modification methylase	Replication, recombination and repair [L]	3.74
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	3.74
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	3.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.18 %
Unclassified	root	N/A	16.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.24 %
Unclassified	root	N/A	16.82 %
Viruses	superkingdom	All Organisms → Viruses	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.24 %
Unclassified	root	N/A	16.82 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.93 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.07 %
Unclassified	root	N/A	16.82 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	51.40 %
Unclassified	root	N/A	16.82 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.93 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.56 %
Unclassified	root	N/A	16.82 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	2.80 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	2.80 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.87 %
Hyphomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales	1.87 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.82 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	14.95 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	2.80 %
Hyphomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae	1.87 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.87 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.87 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.93 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.93 %
unclassified Sphingomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales	0.93 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.82 %
Variibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter	5.61 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	4.67 %
Asticcacaulis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis	2.80 %
unclassified Hyphomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → unclassified Hyphomonadaceae	1.87 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.87 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Aquisediminimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Aquisediminimonas	0.93 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.93 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	0.93 %
Sphingomonadales bacterium EhC05	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium EhC05	0.93 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.82 %
Variibacter gotjawalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	5.61 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	4.67 %
Asticcacaulis tiandongensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis → Asticcacaulis tiandongensis	2.80 %
Hyphomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → unclassified Hyphomonadaceae → Hyphomonadaceae bacterium	1.87 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.87 %
unclassified Nitrobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter	0.93 %
Aquisediminimonas profunda	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Aquisediminimonas → Aquisediminimonas profunda	0.93 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.93 %
Roseomonas lacus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas lacus	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.93 %
Sphingomonadales bacterium EhC05	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium EhC05	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.82 %
Variibacter gotjawalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	5.61 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	4.67 %
Asticcacaulis tiandongensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis → Asticcacaulis tiandongensis	2.80 %
Hyphomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → unclassified Hyphomonadaceae → Hyphomonadaceae bacterium	1.87 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.87 %
Mesorhizobium sp. AR02	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. AR02	0.93 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.93 %
Aquisediminimonas profunda	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Aquisediminimonas → Aquisediminimonas profunda	0.93 %
Roseomonas lacus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas lacus	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.93 %
Sphingomonadales bacterium EhC05	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium EhC05	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02HE241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	507	Open in IMG/M
3300002245\|JGIcombinedJ26739_100390448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1271	Open in IMG/M
3300004080\|Ga0062385_10013378	All Organisms → cellular organisms → Bacteria → Proteobacteria	2883	Open in IMG/M
3300004080\|Ga0062385_10843781	Not Available	603	Open in IMG/M
3300004092\|Ga0062389_103920395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	559	Open in IMG/M
3300005167\|Ga0066672_10501205	Not Available	789	Open in IMG/M
3300005174\|Ga0066680_10879648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → unclassified Hyphomonadaceae → Hyphomonadaceae bacterium	533	Open in IMG/M
3300005177\|Ga0066690_10604931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	732	Open in IMG/M
3300005332\|Ga0066388_100071634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3777	Open in IMG/M
3300005454\|Ga0066687_10645944	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
3300005471\|Ga0070698_102243375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	500	Open in IMG/M
3300005536\|Ga0070697_100501852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	1061	Open in IMG/M
3300005552\|Ga0066701_10209477	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300005557\|Ga0066704_10998099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	517	Open in IMG/M
3300005569\|Ga0066705_10737775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	591	Open in IMG/M
3300005575\|Ga0066702_10624376	Not Available	646	Open in IMG/M
3300005614\|Ga0068856_102659507	Not Available	506	Open in IMG/M
3300005764\|Ga0066903_100584154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1929	Open in IMG/M
3300005764\|Ga0066903_102764348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	952	Open in IMG/M
3300005764\|Ga0066903_104652533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	731	Open in IMG/M
3300006796\|Ga0066665_10586541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	899	Open in IMG/M
3300006797\|Ga0066659_11546110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	556	Open in IMG/M
3300009012\|Ga0066710_101875174	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300009137\|Ga0066709_100472196	Not Available	1760	Open in IMG/M
3300009137\|Ga0066709_101719546	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300009143\|Ga0099792_10428235	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300009792\|Ga0126374_11108920	Not Available	628	Open in IMG/M
3300010046\|Ga0126384_11024456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	753	Open in IMG/M
3300010046\|Ga0126384_11707466	All Organisms → cellular organisms → Bacteria → Proteobacteria	595	Open in IMG/M
3300010047\|Ga0126382_11648527	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300010048\|Ga0126373_10025414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5057	Open in IMG/M
3300010343\|Ga0074044_11066597	Not Available	530	Open in IMG/M
3300010359\|Ga0126376_10179992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1729	Open in IMG/M
3300010359\|Ga0126376_12167544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis → Asticcacaulis tiandongensis	600	Open in IMG/M
3300010360\|Ga0126372_10801651	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300010360\|Ga0126372_11259982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	766	Open in IMG/M
3300010361\|Ga0126378_10461113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	1385	Open in IMG/M
3300010361\|Ga0126378_13041408	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300010362\|Ga0126377_12837705	Not Available	559	Open in IMG/M
3300010366\|Ga0126379_10408953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1407	Open in IMG/M
3300010376\|Ga0126381_100815358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Aquisediminimonas → Aquisediminimonas profunda	1340	Open in IMG/M
3300010397\|Ga0134124_12193581	Not Available	592	Open in IMG/M
3300010398\|Ga0126383_10180868	All Organisms → cellular organisms → Bacteria	2004	Open in IMG/M
3300010398\|Ga0126383_11832198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. AR02	695	Open in IMG/M
3300012189\|Ga0137388_10293873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	1488	Open in IMG/M
3300012202\|Ga0137363_10168058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	1737	Open in IMG/M
3300012203\|Ga0137399_10312707	Not Available	1299	Open in IMG/M
3300012207\|Ga0137381_10829133	All Organisms → cellular organisms → Bacteria → Proteobacteria	801	Open in IMG/M
3300012208\|Ga0137376_10564464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	986	Open in IMG/M
3300012356\|Ga0137371_10647153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	810	Open in IMG/M
3300012357\|Ga0137384_11117041	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300012361\|Ga0137360_10428884	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300012361\|Ga0137360_11815506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → unclassified Hyphomonadaceae → Hyphomonadaceae bacterium	515	Open in IMG/M
3300012508\|Ga0157315_1059502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	535	Open in IMG/M
3300012918\|Ga0137396_10212052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	1425	Open in IMG/M
3300012918\|Ga0137396_10532926	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300012927\|Ga0137416_11117206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	708	Open in IMG/M
3300016270\|Ga0182036_10083667	All Organisms → cellular organisms → Bacteria	2121	Open in IMG/M
3300016270\|Ga0182036_11050293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	673	Open in IMG/M
3300016294\|Ga0182041_10654846	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300016319\|Ga0182033_10447310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1101	Open in IMG/M
3300016341\|Ga0182035_11303456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis → Asticcacaulis tiandongensis	650	Open in IMG/M
3300016357\|Ga0182032_10930215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium EhC05	740	Open in IMG/M
3300016357\|Ga0182032_11225653	Not Available	646	Open in IMG/M
3300016422\|Ga0182039_10427302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1130	Open in IMG/M
3300016445\|Ga0182038_10620569	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300017955\|Ga0187817_10579114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	716	Open in IMG/M
3300020580\|Ga0210403_11131780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	606	Open in IMG/M
3300020583\|Ga0210401_10932230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	727	Open in IMG/M
3300020583\|Ga0210401_11163429	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300021088\|Ga0210404_10133798	All Organisms → cellular organisms → Bacteria	1285	Open in IMG/M
3300021168\|Ga0210406_10554544	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300021178\|Ga0210408_10058727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3005	Open in IMG/M
3300021403\|Ga0210397_10482447	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300021406\|Ga0210386_10743466	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300021406\|Ga0210386_10838964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis → Asticcacaulis tiandongensis	789	Open in IMG/M
3300021407\|Ga0210383_10162121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1904	Open in IMG/M
3300021420\|Ga0210394_10315045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1373	Open in IMG/M
3300021420\|Ga0210394_10697714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	890	Open in IMG/M
3300025906\|Ga0207699_10416020	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300025939\|Ga0207665_10860805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	718	Open in IMG/M
3300026550\|Ga0209474_10720748	Not Available	518	Open in IMG/M
3300026557\|Ga0179587_10388265	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300027703\|Ga0207862_1201165	Not Available	591	Open in IMG/M
3300027903\|Ga0209488_10170216	All Organisms → cellular organisms → Bacteria	1645	Open in IMG/M
3300028536\|Ga0137415_11121233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	600	Open in IMG/M
3300028819\|Ga0307296_10407726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	743	Open in IMG/M
3300031446\|Ga0170820_17082383	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300031469\|Ga0170819_18005747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas lacus	616	Open in IMG/M
3300031474\|Ga0170818_104588722	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300031680\|Ga0318574_10951570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	503	Open in IMG/M
3300031744\|Ga0306918_10225245	All Organisms → cellular organisms → Bacteria	1423	Open in IMG/M
3300031754\|Ga0307475_11265318	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	572	Open in IMG/M
3300031771\|Ga0318546_10334352	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300031777\|Ga0318543_10127186	All Organisms → cellular organisms → Bacteria	1110	Open in IMG/M
3300031819\|Ga0318568_10956066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	529	Open in IMG/M
3300031912\|Ga0306921_10573691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	1307	Open in IMG/M
3300031945\|Ga0310913_11277939	Not Available	509	Open in IMG/M
3300031947\|Ga0310909_10499382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1020	Open in IMG/M
3300032001\|Ga0306922_11653436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300032010\|Ga0318569_10331150	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300032065\|Ga0318513_10683069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	503	Open in IMG/M
3300032066\|Ga0318514_10767764	Not Available	513	Open in IMG/M
3300032076\|Ga0306924_11580181	Not Available	692	Open in IMG/M
3300032174\|Ga0307470_11903480	Not Available	506	Open in IMG/M
3300032180\|Ga0307471_103442803	Not Available	560	Open in IMG/M
3300032180\|Ga0307471_103665200	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.13%
Host-Associated	Host-Associated	1.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.39%
Aquatic	Environmental → Aquatic	3.74%
Plants	Host-Associated → Plants	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.39%
Freshwater	Environmental → Aquatic → Freshwater	3.74%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.11%
Loam	Environmental → Terrestrial → Soil → Loam	9.35%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	38.32%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.02%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.74%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.87%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.63%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.28%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_00699880	2170459010	Grass Soil	VREGGQARRVTKQRALIKSLTAQALQGDVRATTALLALYARVMSEPSEAEINPVEEDELLILRRFGPRLVNALGKKGSK
JGIcombinedJ26739_1003904481	3300002245	Forest Soil	RRISKQRALIKSLMAKALQGDVRATTALLALYARVISEPPEDEGRPIEDDELMIIRRFGPGLLKSLGKKVTRHED*
Ga0062385_100133781	3300004080	Bog Forest Soil	MAKALQGDVRATTAVLTLYARLITEPPEDEGRAIEDDELLIIRRFGPRLL
Ga0062385_108437812	3300004080	Bog Forest Soil	VIVRATTALLALYARIISEPPEDDGGSVEEHELLILRRFGPRLLKSLTRKEAVK*
Ga0062389_1039203951	3300004092	Bog Forest Soil	KQRALIKSLMAKALQGDVRATTALLALYARVISEPPEDESAAVEEDELLILRRFGPRLLKSLGKKEPRG*
Ga0066672_105012051	3300005167	Soil	GDVRATTALLGLYARVISEPVEGEIDRVEEDELLILRRFGPRLADALRKKGARK*
Ga0066680_108796481	3300005174	Soil	LTAQALQGDVRATTALLALYARVMSEPTEAEINPVEEDELLILRRFGPRLVNTLGKKGAKK*
Ga0066690_106049312	3300005177	Soil	HISKQRALIKSLMAKALQGDVRATTALLALYARVISEPPEDESGSVEDHELLILQRFGPRLLKSLTKETGK*
Ga0066388_1000716347	3300005332	Tropical Forest Soil	ATTALLALSARVISEPPEDESAAVEEDELLILRRFGPRLLKSFGKKEPRT*
Ga0066687_106459442	3300005454	Soil	MAKALQGDVRATTALLALYARSMPESPEDEGSVVEEDELLILRRFGPRLIKSLGKKEPRR
Ga0070698_1022433752	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LNEQITVREGGQEHRVTKQRALIKSLTAQALQGDVRATTALLALYARVMSEPAEAEINPVEEDELLILRRFGPRLVNALGKKGARK*
Ga0070697_1005018522	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	RVTKQRALIKSLTAQALKGDVRATTALLALYARVMSEPSASELNPVEEDELLILRRFGPRLVNALGNRGARK*
Ga0066701_102094771	3300005552	Soil	LTAQALQGDVRATTALLALYARVMSEPTVAEINPVEEDELLILRRFGPRLVNALGKKGARK*
Ga0066704_109980991	3300005557	Soil	GQARRVTKQRALIKSLTAQALQGDVRATTALLALYARVMSEPAETEINPVEEDELLILRRFGPRLVNTLGKKGAKK*
Ga0066705_107377752	3300005569	Soil	GQARRVTKQRALIKSLTAQALQGDVRATTALLALYARVMSDPSETEITPVEDDELLILRRFGPRLVNSLGKRAAKK*
Ga0066702_106243761	3300005575	Soil	GDVRATTALLALYARVISEPPEDESGSVEDHELLILQRFGPRLLKSLFKETGK*
Ga0068856_1026595071	3300005614	Corn Rhizosphere	ATTALLALYARVISEPPEDESGSVEDHELLILQRFGPRLLKSLTKETGK*
Ga0066903_1005841544	3300005764	Tropical Forest Soil	SKQRALIKSLMAKALQGDVRATAALLALYARVITEVPEDQNEPIHTEELQILRHFAPRLLRSIVSK*
Ga0066903_1027643483	3300005764	Tropical Forest Soil	LLQGDVRATTALLALYARVISEPPEDESGPIGEDELLILRRFGPRLLKSLGKKEPGI*
Ga0066903_1046525332	3300005764	Tropical Forest Soil	EGGQTRRVTKQRALVKSLTAQALKGDVRATTALLALYARIMSEPAEAEINPVEEDELLILRRFGPRLVRTLGKKGARK*
Ga0066665_105865413	3300006796	Soil	ALYARIIAEPGDGEDRPIEDDELLIIRRFGPRLLKSLSNGKRHED*
Ga0066659_115461102	3300006797	Soil	VTKQRALIKSLTAQALQGDVRATTALLALYARVMSEPSATEINPVEEDELLILRRFGPRLVNALGKKGAKK*
Ga0066710_1018751742	3300009012	Grasslands Soil	RRVTKQRALIKSLTAQALQGDVRATTALLALYARVMSESSEAEINPVEEDELLILRRFGPRLVNTLGKKGAKK
Ga0066709_1004721962	3300009137	Grasslands Soil	LMAKALQGDVRATTALLALYARIIAEPGDDEDRPIEDDELLIIRRFGPRLLKSLGKKGKRHDD*
Ga0066709_1017195462	3300009137	Grasslands Soil	RRVTKQRALIKSLMAQALQGDVRATTALLSLYARVISEPSAAEINPVEEDELLILRRFGPRLVNALGKKGARK*
Ga0099792_104282351	3300009143	Vadose Zone Soil	TAQALQGDVRASTALLALYARVMSEPSEAEINPVEEDELLILRRFGPRLVNALGKKGAKK
Ga0126374_111089201	3300009792	Tropical Forest Soil	KALQGDVRATTALLALYARVISEAPEDDNGSVEEHELLILRRFGPRLLKSLTKEAGK*
Ga0126384_110244562	3300010046	Tropical Forest Soil	MAKALQGDVRATTALLALYARVISEPPDDDSGSVAEDELLILRRFGPRLLKSLARNDTER
Ga0126384_117074662	3300010046	Tropical Forest Soil	VREGGQARRVTKQRALIKSLTAQALQGDVRATTALLALYARVMSEPAEAEINPVEEDELLILRRFGP
Ga0126382_116485271	3300010047	Tropical Forest Soil	VREGGQARRVTKQRALIKSLTAQALQGDVRATTALLALYARVMSEPAEAEINPVEEDELLILRRFGPRLVNTLVKKGAKK*
Ga0126373_100254142	3300010048	Tropical Forest Soil	MAKALQGDVRATTALLALYARVISEPPEDESGSVEEHELLILRRFGPRLVKSLAKKEARK
Ga0074044_110665971	3300010343	Bog Forest Soil	ATTAVLTLYARLITEPPEDEGRAIEDDELLIIRRFGPRLLKSLSKKETRDED*
Ga0126376_101799922	3300010359	Tropical Forest Soil	VSKQRALIKSLMAKALQGDVRANAAVLALYARVITDLPDDQDNIVDEKEFQILRRFAPRLISPLRQQNVEL*
Ga0126376_121675442	3300010359	Tropical Forest Soil	LIKSLLAKALQGDVRATTAVLALYARVITETPEDHNDSIEADELQILRRFAPRLLKSIRAK*
Ga0126372_108016512	3300010360	Tropical Forest Soil	QGDVRATTALLALYARVISEPPEDESAAVEEDELLILRRFGPRLLKSFGKKEPRT*
Ga0126372_112599823	3300010360	Tropical Forest Soil	VRATTALLALYARVISEPSEGEIDRVEEDELLILQRFGPRLGN
Ga0126378_104611131	3300010361	Tropical Forest Soil	TALLALYARVISEPPEDESGLIAEDELLVLRRFGPRLLKSLAKKEAAK*
Ga0126378_130414082	3300010361	Tropical Forest Soil	GDVRATTALLALYARVITEPPEDESGSVGEHELLILRRFGPRLLKSLTKETGK*
Ga0126377_128377051	3300010362	Tropical Forest Soil	IKSLTAQALQGDVRATTALLALYARVISEPAEAEINPVEEDELLILRRFGPRLVNTLVKKGAKK*
Ga0126379_104089533	3300010366	Tropical Forest Soil	VRATTALLALYARVISEPPEDESGPIGEDELLILRRFGPRLLKSLGKKEPGI*
Ga0126381_1008153582	3300010376	Tropical Forest Soil	KQRALIKSLMAKALQGDVRATTALLALYARVISEPPEDDSGSVQEHELLILRRFAPRLVKSLAKKEAVK*
Ga0134124_121935812	3300010397	Terrestrial Soil	QARHISKQRALIKSLMAKALQGDVRATTALLALYARVISEPPEDESGSVEDHELLILQRFGPRLLKSLTKETGK*
Ga0126383_101808683	3300010398	Tropical Forest Soil	SLTAKALQGDVRATTAMLALYARVISEPPEDESAAVEEDELLILRRFGPRLLKSFGKKEPRT*
Ga0126383_118321983	3300010398	Tropical Forest Soil	MAKALQGDVRATTALLALYARVISEPPDDDSGSVPEDELLILRRFGPRLLKSLAQNETER
Ga0137388_102938731	3300012189	Vadose Zone Soil	ALQGDVRATTALLALARVMSEPAEAEINPVEEDELLILRRFGPRLVNALGKKGARK*
Ga0137363_101680581	3300012202	Vadose Zone Soil	ISKQRALIKSLMAKALQGDVRAMTSLWALYARVITEPPHDDNQPIDTDELQVLRRFAPRLLRSVNRQ*
Ga0137399_103127071	3300012203	Vadose Zone Soil	RPRRISKQRALVKSLMAKALQGDVRATTALLALYARVISEPPEDEGRPIEDDELLIIRRFGPRLLKSLGKKETRHED*
Ga0137381_108291332	3300012207	Vadose Zone Soil	LIKALTAQALQGDVRATTVLLALYARVMSEPTVAEINPVEEDELLILRRFGPRLVNALGKKGARK*
Ga0137376_105644642	3300012208	Vadose Zone Soil	GQARRVTKQRALIKSLTAQALQGDVRATTALLALYARVMSEPTVAEINPVEEDELLILRRFGPRLVNALGKKGARK*
Ga0137371_106471531	3300012356	Vadose Zone Soil	KQRALIKSLTAQALQGDVRATTALLALYARVMSEPAEAEINPVQEDELLILRRFGPRLVNALGKKGAKK*
Ga0137384_111170411	3300012357	Vadose Zone Soil	RALIKSLTAQALQGDVRATTALLALYARVMSEPSEAEINPVEEDELLILRRFGPRLVNTLGKKGAKK*
Ga0137360_104288841	3300012361	Vadose Zone Soil	QARRVTKQRALIKSLTAQALQGDVRATTALLALYARVMSEPSEAEINPVEEDELLILRRFGPRLVNALGKQGVRK*
Ga0137360_118155061	3300012361	Vadose Zone Soil	LMARALQGDVRATTALLALYARILAEPGDDEDRPIEDDELLIIRRFGPRLLKSLGKKGKRHDD*
Ga0157315_10595021	3300012508	Arabidopsis Rhizosphere	QRALIKSLMAKALQGDVRATASLLALYARVITEPASDENEPIEGDELQVLRRFAPRLLRSMNK*
Ga0137396_102120521	3300012918	Vadose Zone Soil	ALQGDVRATTALLALYARVMSEPAEAEINPVEEDELLILRRFGPRLVNALGKKGARK*
Ga0137396_105329262	3300012918	Vadose Zone Soil	VKSLMAKALQGDVRATTALLALYARVISEPPEDEGRPIEDDELLIIRRFGPRLLKSLGKKETRHED*
Ga0137416_111172061	3300012927	Vadose Zone Soil	LLALYARVISEPPEDEGRPIEDDELLIIRRFGPRLLKSLGKKETRHED*
Ga0182036_100836671	3300016270	Soil	KALQGDVRATSALLALYARVISEPPEDENGSVEEHELLILRRFGPRLLRSLAKKEAVK
Ga0182036_110502933	3300016270	Soil	LIKSLMAKALQGDVRAMTSLLALYARVITEPPHDDDQPIDADELQVLRRFAPRLLRSVNRRNRR
Ga0182041_106548461	3300016294	Soil	SKQRALIKSLMAKALQGDVRATTALLALYARVISEPPEDESGSVEEHELLILRRFGPRLLKSLAKKEAGK
Ga0182033_104473101	3300016319	Soil	KSLMAKALQGDVRATTALLALYARVISEPPEDESGSVEEHELLILRRFGPRLLKSLAKKEAGK
Ga0182035_113034561	3300016341	Soil	ALQGDVRATSALLALYARVISEPPEDENGSVEEHELLILRRFGPRLLRSLAKKEAVK
Ga0182032_109302151	3300016357	Soil	GDVRATTALLALYARVICEPPEDESGSVEEHELLILRRFGPHLLKSLARKETGK
Ga0182032_112256532	3300016357	Soil	AKALQGDVRATTALLALHARVISESPEDDSGLIAEDELLVLRRFGPRLLKSLAKMEPGK
Ga0182039_104273023	3300016422	Soil	KSLTAQALKGDVRATSALLALYARVISEPAAAENASIEEDELLILRRFGPRLLASLGKKGSIA
Ga0182038_106205691	3300016445	Soil	KALQGDVRATTALLALYARVISEPPEDESGSVEEHELLILRRFGPRLLKSLAKKEAGK
Ga0187817_105791142	3300017955	Freshwater Sediment	REHGRQRQLSKQRALIRSLMSKALEGDVRASTAVLALYARVISEPSEDEGRPIDDDELLIIRRFGPRLLKALGKKGIKS
Ga0210403_111317802	3300020580	Soil	EGGQARYISKQRALIKSLMAKALQGDVRATTALLALYARVISEPPEDESGSVEEHELLILRRFAPRLVKSLAKKGAVK
Ga0210401_109322301	3300020583	Soil	LMGKALDGDVRASTAVLALYARVISEPPEDEGRPIDEDELLIIRRFGPRLVKSLGKKGIK
Ga0210401_111634291	3300020583	Soil	VREGGQARRVTKQRALIKSLTAQALQGDVRATTALLSLYARVISEPTEAETNPVEEDELLILRRFGPRLVNSLGKKAARK
Ga0210404_101337981	3300021088	Soil	ALLALYARVISEPPEDENGSVEEHELLILRRFGPRLLRSLAKKEAVK
Ga0210406_105545441	3300021168	Soil	RATTALLALYARVISEPPEDESGSVEQHELLIRRRFGPRLLKSLAKKEAGI
Ga0210408_100587271	3300021178	Soil	ADAKALQGDVRATTAVLALYARVITETPEAEGQPIEDDELLIIRRFGPRLLKSLGKKETRDED
Ga0210397_104824471	3300021403	Soil	ITALLGLYARVLSEPTEAETNPVEDDELLILRRFGPRLVNSLGKRAAKK
Ga0210386_107434661	3300021406	Soil	MAKALQGDVRATTALLALYARVITEPPEDDSGSVEEHELLVLRRFGPRLLKSLTKETRK
Ga0210386_108389642	3300021406	Soil	ALIKSLTAQALQGDVRAITALLGLYARVLSEPTEAETNPVEDDELLILRRFGPRLVNSLGKRAAKK
Ga0210383_101621211	3300021407	Soil	MAKALQGDVRATTALLALYARVITEPPEDDSGLVEEHELLVLRRFGPRLLKSLTKETRK
Ga0210394_103150452	3300021420	Soil	MAKALQGDVRATTAVLALYARVITETPEAEGQPIEDDELLIIRRFGPRLLKSLGKKETRDED
Ga0210394_106977141	3300021420	Soil	RADHRARGGPSAPRHQQRALIKSLTAQALQGDVRAITALLGLYARVLSEPTEAETNPVEDDELLILRRFGPRLVNSLGKRAAKK
Ga0207699_104160202	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	QGDVRATTAVLALYARVITETPEAEGQPIEDDELLIIRRFGPRLLKSLGKKETRDED
Ga0207665_108608052	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LQGDVRATTAVLALYARVITETPEAEGQPIEDDELLIIRRFGPRLLKSLGKKETRDED
Ga0209474_107207481	3300026550	Soil	SEQITVREGGQARRVTKQRALVKSLMAQALQGDVRATTALLALYARVMSEPSEAEINPVEEDELLILRRFGPRLVNTLVKKGAKR
Ga0179587_103882652	3300026557	Vadose Zone Soil	PLALYARVMSEPAEAEINPVEEDELLILRRFGPRLVNAFGKKGARK
Ga0207862_12011652	3300027703	Tropical Forest Soil	SLTAKALQGDVRATTALLALHARVISESPEDDSGLIAQDELLVLRRFGPRLLKSLAKMEPGK
Ga0209488_101702161	3300027903	Vadose Zone Soil	EGGQARRVTKQRALIKSLTAQALQGDVRATTALLALYARVMSEPSEAEINPVEEDELLILRRFGPRLVNALGKKGAKK
Ga0137415_111212332	3300028536	Vadose Zone Soil	QHRISKQRALVKSLMAKALQGDVRATTAVLALYARVISEPEEEGRPIEEDELLIIRRFGPRLLKSLGKKGTQRED
Ga0307296_104077262	3300028819	Soil	KQRALIKSLMARALQGDVRAMASLLALYARVITEPPHDDNQPIDTDELQVLRRFAPRLLRSVNRR
Ga0170820_170823832	3300031446	Forest Soil	TAQARQGDVRATTALLALYARVISEPTEAEINPVEEDELLILRRFGPRLISALGKKGARK
Ga0170819_180057472	3300031469	Forest Soil	GGQARRVTKQRALIKSLTAQALQGDVRATTALLALYARVMSEPAEAEINPVEEDELLILRRFGPRLVNTLGKKGAKK
Ga0170818_1045887221	3300031474	Forest Soil	PVREGGQARRVTKQRALIKSLTAQALQGDVRATTALLALYARVMSEPSEAEINPVEEDELLILRRFGPRLVNALDKKGAKK
Ga0318574_109515702	3300031680	Soil	MAKALQGDVRATTALLALYARVISEPPEDESGSVEEHELLILRRFGPRLLKSLAKKEAGK
Ga0306918_102252453	3300031744	Soil	VSKQRALIKSLMAKALQGDVRATTAVLALYARVITEPPEDESGSVEEHELLILRRFGPRLLKSLTKETGK
Ga0307475_112653182	3300031754	Hardwood Forest Soil	KALQGDVRATSALLALYARVISEPAEDESGSVEEHELLILRRFAPRLVKSLEKKEAVK
Ga0318546_103343522	3300031771	Soil	VRATSALLALYARVIAEPAAAENASIEEDELLILRRFGPRLLASLGKKGRTA
Ga0318543_101271862	3300031777	Soil	LTAQALKGDVRATSALLALYARVIAEPAAAENASIEEDELLILRRFGPRLLASLGKKGRT
Ga0318568_109560662	3300031819	Soil	MAKALQGDVRATTALLALYARVITEPPEDESGSVEEHELLILRRFGPRLLKSLTKETGK
Ga0306921_105736912	3300031912	Soil	TAKALQGDVRATTALLALHARVISESPEDDSGLIAEDELLVLRRFGPRLLKSLAKMEPGK
Ga0310913_112779392	3300031945	Soil	QRALIKSLMAKALQGDVRAMTSLLALYARVITEPPHDDNQPIDTDELQVLRRFAPRLLRSVNRR
Ga0310909_104993822	3300031947	Soil	MAKALQGDVRATTALLALYARVITEPPEDESGSVEEHELVILRRFGPRLLKSLTKETEK
Ga0306922_116534362	3300032001	Soil	GQARHISKQRALIKSLMAKALQGDVRATTALLALYARVISEPPEDESGSVEEHELLILRRFGPRLVKSLAKKEAAK
Ga0318569_103311501	3300032010	Soil	QRALIKSLTAQALKGDVRATSALLALYARVIAEPAAAENASIEEDELLILRRFGPRLLASLGKKGRTA
Ga0318513_106830691	3300032065	Soil	EGGQARHISKQRALIKSLMAKALQGDVRATTALLALYARVISEPPEDESGSVEEHELLILRRFGPHLVKSLAKKEAAK
Ga0318514_107677641	3300032066	Soil	AKALQGDVRATTVLLALYARVISEPPEDESGSVEEHELLILRRFGPRLLKSLAKKEAGK
Ga0306924_115801811	3300032076	Soil	ISKQRALIKSLTQKAMNGDVRAIAAVLALYSRVITEPPPDENQPVDADELQIVRRFAPGLLRKIKQQ
Ga0307470_119034802	3300032174	Hardwood Forest Soil	QRALIKSLTAQALQGDVRATTALLGLHARVMSEPAAAEINPVEEDELLILRRFGPRLVNALGKKGAKK
Ga0307471_1034428032	3300032180	Hardwood Forest Soil	RVTKQRALIKSLTAQALQGDVRATTALLALYARVMSEPSEAEINPVEEDELLILRRFGPRLVNALGKKGAKK
Ga0307471_1036652002	3300032180	Hardwood Forest Soil	VRATTALLALYARVMSEPTEAEINPVEEDELLILRRFGPRLVNTLGKKGTKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F091700

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences