Metagenome / Metatranscriptome Family F091670

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091670
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	48 residues
Representative Sequence	AIDTRAFRVAADAVRLVPPGLGRDVGMLGAVISARERLAGRGEWFL
Number of Associated Samples	86
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.93 %
% of genes near scaffold ends (potentially truncated)	97.20 %
% of genes from short scaffolds (< 2000 bps)	88.79 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (18.692 % of family members)
Environment Ontology (ENVO)	Unclassified (37.383 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.075 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.89% β-sheet: 0.00% Coil/Unstructured: 58.11%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF02800	Gp_dh_C	48.60
PF00044	Gp_dh_N	41.12
PF00162	PGK	5.61
PF01326	PPDK_N	0.93
PF13883	Pyrid_oxidase_2	0.93
PF03952	Enolase_N	0.93
PF00480	ROK	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0057	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	Carbohydrate transport and metabolism [G]	89.72
COG0126	3-phosphoglycerate kinase	Carbohydrate transport and metabolism [G]	5.61
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.87
COG0148	Enolase	Carbohydrate transport and metabolism [G]	0.93
COG0574	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	Carbohydrate transport and metabolism [G]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	71.96 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	71.03 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	63.55 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	63.55 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → environmental samples	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	63.55 %
uncultured Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → environmental samples → uncultured Thermoleophilia bacterium	0.93 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000574\|JGI1357J11328_10195065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	549	Open in IMG/M
3300000956\|JGI10216J12902_100277064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1016	Open in IMG/M
3300000956\|JGI10216J12902_103028496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	789	Open in IMG/M
3300000956\|JGI10216J12902_115739967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	799	Open in IMG/M
3300001661\|JGI12053J15887_10053405	All Organisms → cellular organisms → Bacteria	2257	Open in IMG/M
3300002561\|JGI25384J37096_10228826	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300002908\|JGI25382J43887_10278453	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300004480\|Ga0062592_101189480	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300005172\|Ga0066683_10030243	All Organisms → cellular organisms → Bacteria	3113	Open in IMG/M
3300005293\|Ga0065715_10775066	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300005364\|Ga0070673_100587244	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300005450\|Ga0066682_10065288	All Organisms → cellular organisms → Bacteria	2237	Open in IMG/M
3300005450\|Ga0066682_10869294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	539	Open in IMG/M
3300005451\|Ga0066681_10335411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	928	Open in IMG/M
3300005467\|Ga0070706_100036359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4548	Open in IMG/M
3300005468\|Ga0070707_100549119	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300005546\|Ga0070696_101533935	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300005553\|Ga0066695_10664790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	615	Open in IMG/M
3300005560\|Ga0066670_10174012	All Organisms → cellular organisms → Bacteria	1277	Open in IMG/M
3300005568\|Ga0066703_10152384	All Organisms → cellular organisms → Bacteria	1389	Open in IMG/M
3300005568\|Ga0066703_10785072	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300005569\|Ga0066705_10838241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	547	Open in IMG/M
3300005578\|Ga0068854_102067143	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300005719\|Ga0068861_100633531	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300006797\|Ga0066659_10521441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	956	Open in IMG/M
3300006797\|Ga0066659_11402106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	583	Open in IMG/M
3300006846\|Ga0075430_101420486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	570	Open in IMG/M
3300009012\|Ga0066710_100203529	All Organisms → cellular organisms → Bacteria	2820	Open in IMG/M
3300009012\|Ga0066710_103770228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	569	Open in IMG/M
3300009038\|Ga0099829_10335367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1243	Open in IMG/M
3300009053\|Ga0105095_10271836	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300009088\|Ga0099830_10783382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	786	Open in IMG/M
3300009090\|Ga0099827_10601292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	948	Open in IMG/M
3300009090\|Ga0099827_11215579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	655	Open in IMG/M
3300009147\|Ga0114129_10676506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1329	Open in IMG/M
3300009147\|Ga0114129_12868011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	571	Open in IMG/M
3300010304\|Ga0134088_10042377	All Organisms → cellular organisms → Bacteria	2078	Open in IMG/M
3300010329\|Ga0134111_10506692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	530	Open in IMG/M
3300010335\|Ga0134063_10125359	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300010335\|Ga0134063_10182736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	982	Open in IMG/M
3300012045\|Ga0136623_10136612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1065	Open in IMG/M
3300012092\|Ga0136621_1032291	All Organisms → cellular organisms → Bacteria	2154	Open in IMG/M
3300012184\|Ga0136610_1157947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	786	Open in IMG/M
3300012198\|Ga0137364_10521506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	894	Open in IMG/M
3300012198\|Ga0137364_10986845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	637	Open in IMG/M
3300012209\|Ga0137379_10864436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	809	Open in IMG/M
3300012209\|Ga0137379_10872637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	804	Open in IMG/M
3300012210\|Ga0137378_10427638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1227	Open in IMG/M
3300012211\|Ga0137377_11396849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	629	Open in IMG/M
3300012349\|Ga0137387_10380586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1023	Open in IMG/M
3300012353\|Ga0137367_10964767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	584	Open in IMG/M
3300012530\|Ga0136635_10071236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1073	Open in IMG/M
3300012532\|Ga0137373_10412041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1047	Open in IMG/M
3300012668\|Ga0157216_10018907	All Organisms → cellular organisms → Bacteria	3618	Open in IMG/M
3300012684\|Ga0136614_10102354	All Organisms → cellular organisms → Bacteria	2172	Open in IMG/M
3300012684\|Ga0136614_10168262	All Organisms → cellular organisms → Bacteria	1658	Open in IMG/M
3300012917\|Ga0137395_11188203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	535	Open in IMG/M
3300012972\|Ga0134077_10201007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	812	Open in IMG/M
3300012972\|Ga0134077_10251545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	732	Open in IMG/M
3300012972\|Ga0134077_10458724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	559	Open in IMG/M
3300013770\|Ga0120123_1101282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	657	Open in IMG/M
3300014745\|Ga0157377_11129238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → environmental samples → uncultured Thermoleophilia bacterium	602	Open in IMG/M
3300015241\|Ga0137418_10504410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	967	Open in IMG/M
3300015358\|Ga0134089_10082200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1215	Open in IMG/M
3300015359\|Ga0134085_10426597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	598	Open in IMG/M
3300017654\|Ga0134069_1315510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	557	Open in IMG/M
3300017656\|Ga0134112_10397905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	569	Open in IMG/M
3300017789\|Ga0136617_10212497	All Organisms → cellular organisms → Bacteria	1626	Open in IMG/M
3300017789\|Ga0136617_10925587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	664	Open in IMG/M
3300018061\|Ga0184619_10131045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1138	Open in IMG/M
3300018061\|Ga0184619_10366677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	656	Open in IMG/M
3300018433\|Ga0066667_10087916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2026	Open in IMG/M
3300018433\|Ga0066667_11494942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	597	Open in IMG/M
3300018482\|Ga0066669_10381873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1185	Open in IMG/M
3300019279\|Ga0184642_1520820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	596	Open in IMG/M
3300019883\|Ga0193725_1065605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	904	Open in IMG/M
3300020002\|Ga0193730_1143379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	638	Open in IMG/M
3300020018\|Ga0193721_1011176	All Organisms → cellular organisms → Bacteria	2356	Open in IMG/M
3300021078\|Ga0210381_10270321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	608	Open in IMG/M
3300021080\|Ga0210382_10125313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1087	Open in IMG/M
3300021080\|Ga0210382_10432619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	583	Open in IMG/M
3300021363\|Ga0193699_10368850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	597	Open in IMG/M
3300023058\|Ga0193714_1041917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	665	Open in IMG/M
3300025918\|Ga0207662_10510598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	829	Open in IMG/M
3300026285\|Ga0209438_1222145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	509	Open in IMG/M
3300026300\|Ga0209027_1161930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	750	Open in IMG/M
3300026300\|Ga0209027_1178610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	696	Open in IMG/M
3300026301\|Ga0209238_1114011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	900	Open in IMG/M
3300026310\|Ga0209239_1090286	All Organisms → cellular organisms → Bacteria	1312	Open in IMG/M
3300026334\|Ga0209377_1226541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	615	Open in IMG/M
3300026335\|Ga0209804_1100027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1335	Open in IMG/M
3300026523\|Ga0209808_1065285	All Organisms → cellular organisms → Bacteria	1607	Open in IMG/M
3300026523\|Ga0209808_1166613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	813	Open in IMG/M
3300026529\|Ga0209806_1317568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	523	Open in IMG/M
3300026537\|Ga0209157_1065999	All Organisms → cellular organisms → Bacteria	1838	Open in IMG/M
3300027846\|Ga0209180_10169176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1260	Open in IMG/M
3300027875\|Ga0209283_10499163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	783	Open in IMG/M
3300027882\|Ga0209590_10183278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1316	Open in IMG/M
3300027882\|Ga0209590_10378879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	913	Open in IMG/M
3300028536\|Ga0137415_10018005	All Organisms → cellular organisms → Bacteria	7007	Open in IMG/M
3300028673\|Ga0257175_1082144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	619	Open in IMG/M
3300028771\|Ga0307320_10265345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	678	Open in IMG/M
3300028807\|Ga0307305_10052612	All Organisms → cellular organisms → Bacteria	1874	Open in IMG/M
3300028811\|Ga0307292_10081914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1249	Open in IMG/M
3300028819\|Ga0307296_10139079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1309	Open in IMG/M
3300028878\|Ga0307278_10485944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	540	Open in IMG/M
3300031720\|Ga0307469_11249075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	704	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.52%
Host-Associated	Host-Associated	7.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.57%
Aquatic	Environmental → Aquatic	14.95%
Plants	Host-Associated → Plants	7.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.57%
Freshwater	Environmental → Aquatic → Freshwater	13.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.80%
Sediment	Environmental → Aquatic → Sediment	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.90%
Ice	Environmental → Aquatic → Freshwater → Ice	7.48%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.67%
Loam	Environmental → Terrestrial → Soil → Loam	4.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.87%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.25%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	29.91%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	7.48%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.87%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	18.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	11.21%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	10.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.35%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	7.48%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.93%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.93%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000574	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300012045	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)	Environmental	Open in IMG/M
3300012092	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ445A (23.06)	Environmental	Open in IMG/M
3300012184	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ134 (22.06)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012530	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ85 (21.06)	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300023058	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028673	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1357J11328_101950652	3300000574	Groundwater	AAAVRVVPASLGPDVGLVGAALAACERAAGRGEWFL*
JGI10216J12902_1002770641	3300000956	Soil	KGAAAAVRVVPAALGRDVGMLGAVIYARERLAGRDEWFR*
JGI10216J12902_1030284961	3300000956	Soil	TRAFRVAADAVRLVPPGLGRDVGMLGAVISVRERLAGRAEWFL*
JGI10216J12902_1157399671	3300000956	Soil	DRAFRAPASAVRVVPAALGRDVGMLGAVVAARERLSGRGEWFL*
JGI12053J15887_100534053	3300001661	Forest Soil	RAFRAPASAVRLVPSALGGDVGMLGAVFGARDRLAGRGEWFL*
JGI25384J37096_102288262	3300002561	Grasslands Soil	PAHTLEPMRRAIASRAFRVAADAVRLVPPGLGRDVGMLGAVISVRERLAGRAEWFL*
JGI25382J43887_102784532	3300002908	Grasslands Soil	RAIASRAFRVAADAVRLVPPGLGRDVGMLGAVISVRERLAGRAEWFL*
Ga0062592_1011894802	3300004480	Soil	MRRAIMARAFKVPGAAANVVPAALGRDVGMLGAVFAARERLSGRGEWFL*
Ga0066683_100302431	3300005172	Soil	SLIVIGGSVAEHEPAHTIEPMRRAIATRAFRVAADAVRLVPPGLGRDVGMLGAVISVRERLAGRAEWFL*
Ga0065715_107750661	3300005293	Miscanthus Rhizosphere	AFRAPAGAVRVVPAELGGDVGMLGAVFAARERLSGRGEWFL*
Ga0070673_1005872442	3300005364	Switchgrass Rhizosphere	RAIAERAFRAPAGAVRVVPAELGGDVGMLGAVFAARERLSGRGEWFL*
Ga0066682_100652881	3300005450	Soil	TLEPMRRAIAARAFRVAAEAVRIVPPGLGRDVGMLGAVLSVRERLAGRAEWFI*
Ga0066682_108692942	3300005450	Soil	FRAPASAVRVVPAALGGDVGMLGAVFAARERLSGRGEWFL*
Ga0066681_103354112	3300005451	Soil	FKVPALAVRVEPAALGADVGMLGAVLEARERAASRGAWFL*
Ga0070706_1000363591	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	EHEPSHTIELMRRAIAARAFKVAAAAVRVVPAALGRDVGMLGAVIYARERLAGRDGWFR*
Ga0070707_1005491192	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	PAHTIEPMRRAIDTRAFRVAADAVRLVPPGLGRDVGMLGAVISARERLAGRGGWFL*
Ga0070696_1015339351	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MRRAIAARAFKVAADAVRVVPAALGRDVGMLGAVISVRERLAGRADWFL*
Ga0066695_106647901	3300005553	Soil	VGGSIADNQPGHVLEPMRRAIAERAFRAPASAVRVVPAALGGDVGMLGAVFAARERLSGRGEWFL*
Ga0066670_101740122	3300005560	Soil	IAERAFRVAAEAVRVVPAGLGRDVGMLGAVISVRERLAGRAEWFL*
Ga0066703_101523841	3300005568	Soil	GSIADNQPGHVLEPMRRAIAERAFRAPASAVRVVPAALGGDVGMLGAVFAARERLSGRGEWFL*
Ga0066703_107850721	3300005568	Soil	AHTLEPMRRAIDTRAFRVAADAVRLVPPGLGRDVGMLGAVISARERLAGRGEWFL*
Ga0066705_108382412	3300005569	Soil	LAVRVEPAALGADVGMLGAVLEARERAATRGAWFL*
Ga0068854_1020671431	3300005578	Corn Rhizosphere	PMRRAITERAFRAPAGAVRVVPAELGGDVGMLGAVFAARERLSGRGEWFL*
Ga0068861_1006335312	3300005719	Switchgrass Rhizosphere	KQPAHVLEPMRLAIAERAFRAPAGAVRVVPAELGGDVGMLGAVFAARERLSGRGEWFL*
Ga0066659_105214411	3300006797	Soil	AEHEPARTLEPMRRGIAERAFKVPRDAVRVVPAALGRDVGMLGAAIAARERSSGRGEWFL
Ga0066659_114021061	3300006797	Soil	RVAADAVRLVPPGLGRDVGMLGAVISVRERLAGRSGWFL*
Ga0075430_1014204861	3300006846	Populus Rhizosphere	RAVRLVPAALGADVGMHGAVLEARERAAGRGDWFL*
Ga0066710_1002035294	3300009012	Grasslands Soil	VGGSIADNQPGHVLEPMRRAIAERAFRAPASAVRVVPAALGGDVGMLGAVFAARERLSGRGEWFL
Ga0066710_1037702282	3300009012	Grasslands Soil	DAVRLVPPGLGRDVGMLGAVISVRERLAGRAEWFL
Ga0099829_103353671	3300009038	Vadose Zone Soil	FRVAADAVRLVPPGLGRDVGMLGAVISARERLAGRGEWFL*
Ga0105095_102718363	3300009053	Freshwater Sediment	RAPADAVQVVPAALGADVGMLGAVFAARERLSGRGEWFL*
Ga0099830_107833822	3300009088	Vadose Zone Soil	PAAAVRLVPAALGADVGMHGAVLEARERASGRGDWFL*
Ga0099827_106012921	3300009090	Vadose Zone Soil	EPGHTLEPMRKAIIARAFKVAAAAVRVVPAALGRDVGMLGAVIYARERLAGRDEWFR*
Ga0099827_112155792	3300009090	Vadose Zone Soil	AFRVAANAVQVVPAALGRDVGMLGAVIAARERLAGRGEWFL*
Ga0114129_106765062	3300009147	Populus Rhizosphere	AFRAPAAAVRLVPAALGADVGMHGAVLEAQERVAGRGDWFL*
Ga0114129_128680111	3300009147	Populus Rhizosphere	LEPMRRAIDTRAFRVAADAVRVVPAALGRDVGMLGAVISLRERLAGRAEWFL*
Ga0134088_100423771	3300010304	Grasslands Soil	GHVLEPMRRAIAERAFRAPAAAVRVVPAALGGEVGMIGAVFAARERLSGRGEWFL*
Ga0134111_105066921	3300010329	Grasslands Soil	KVAAAAVRVVPAALGRDVGMLGAVIYARERLAGRDEWFR*
Ga0134063_101253592	3300010335	Grasslands Soil	MRRAIVTRAFRVAADAVRLVPPGLGRDVGMLGAVISARERLAGRGEWFL*
Ga0134063_101827361	3300010335	Grasslands Soil	HTLEPMRRAIDTRAFRVAADAVRLVPPGLGRDVGMLGAVISARERLAGRGEWFL*
Ga0136623_101366122	3300012045	Polar Desert Sand	LEPMRRAIQARAFRVPAASVTVVPAALGADVGLIGSVLAARERGAGRGDWFL*
Ga0136621_10322911	3300012092	Polar Desert Sand	RAIQARAFRVPAASVTVVPAALGADVGLIGSVLAARERGAGRGEWFL*
Ga0136610_11579471	3300012184	Polar Desert Sand	VPAASVRVVRADLGADVALLGSVLAARERAAGRGEWFL*
Ga0137364_105215061	3300012198	Vadose Zone Soil	ETLGIAAEAVRVVPAGLGRDVGMLGAVISVRERLAGRAEWFL*
Ga0137364_109868452	3300012198	Vadose Zone Soil	AIAARAFKVAAAAVRIVPAALGRDVGMLGAVIYARERRAGRDEWFR*
Ga0137379_108644361	3300012209	Vadose Zone Soil	IADNQPGHVLEPMRRAIAERAFRAPAAAVRVVPAALGGDVGMLGAVFAARERLSGRGEWFL*
Ga0137379_108726371	3300012209	Vadose Zone Soil	VLTPMRAAIAARAFKAPAAAVRLVPAALGQDVGMHGAVLEARERAAGRGEWFL*
Ga0137378_104276381	3300012210	Vadose Zone Soil	MRRAIATRAFRVAADAVRLVPPGLGRDVGMLGAVISVRERLAGRAEWFL*
Ga0137377_113968491	3300012211	Vadose Zone Soil	RVAADAVRLVPPGLGRDVGMLGAVISARERLAGRAEWFL*
Ga0137387_103805861	3300012349	Vadose Zone Soil	TIEPMRQAIATRAFRVAADAVRLVPPGLGRDVGMLGAVISARERLAGRAEWFL*
Ga0137367_109647672	3300012353	Vadose Zone Soil	AAVRVEPAALGGDVGMVGAVLAARERVSGKGEWFL*
Ga0136635_100712362	3300012530	Polar Desert Sand	IVVGGSVAEHQPVHVLEPMRRAIAMRAFRVPAASVTVVPAALGADVALLGSVLAARERAAGRGEWFL*
Ga0137373_104120411	3300012532	Vadose Zone Soil	RAIAERAFRAPAAAVRVVPSALGGDVGMLGAALAARERLSGRGEWFL*
Ga0157216_100189071	3300012668	Glacier Forefield Soil	EHQPAHVLEPMRRAIEARAFRVPAASVRVVPAGLGADVSLLGAVLAARERAAGRGEWFL*
Ga0136614_101023543	3300012684	Polar Desert Sand	AASVTVVPAALGADVGLIGSVLAARERGAGRGDWFL*
Ga0136614_101682623	3300012684	Polar Desert Sand	PMRRAIGARAFRVPAGSVRVVPAALGPDVALLGSVLAARERSAGLGEWFL*
Ga0137395_111882032	3300012917	Vadose Zone Soil	RVAADAVRLVPPGLGRDVGMLGAVISVRERLAGRAEWFL*
Ga0134077_102010071	3300012972	Grasslands Soil	TIEPMRRAIAERAFRVAANAVQVVPAALGHDVGMLGAVIAARERSSGRGEWFR*
Ga0134077_102515452	3300012972	Grasslands Soil	RRAIATRAFRVAADAVRLVPPGLGRDVGMLGAVISVRERLAGRAEWFL*
Ga0134077_104587241	3300012972	Grasslands Soil	HTIEPMRRAIATRAFRVAADAVRLVPPGLGRDVGMLGAVISVRERLAGRGEWFL*
Ga0120123_11012822	3300013770	Permafrost	MSRPRIRPAIDARAFRVAADAVRVVPAALGRDVGMLGAVISVRERLAGRGEWFL*
Ga0157377_111292381	3300014745	Miscanthus Rhizosphere	APAAAVRIVPATLGGDVGMLGAVLEARERAAGRGDWFL*
Ga0137418_105044101	3300015241	Vadose Zone Soil	ASAVRLVPSALGGDVGMLGAVFGARERLAGRGEWFL*
Ga0134089_100822001	3300015358	Grasslands Soil	IADRAFRAPAAAVRVVPAALGADVGMHGAVLEARERASGRGDWFL*
Ga0134085_104265971	3300015359	Grasslands Soil	IATRAFRVAADAVRLVPPGLGRDVGMLGAVISVRERLAGRAEWFL*
Ga0134069_13155101	3300017654	Grasslands Soil	AERAFRAPAAAVRVVPAALGGEVGMIGAVFAARERLSGRGEWFL
Ga0134112_103979052	3300017656	Grasslands Soil	FKVPRDAVRVVQAALGRDVGMLGAAIAARERSSGRGEWFL
Ga0136617_102124971	3300017789	Polar Desert Sand	VAEHQPVHVLEPMRRAIAARAFRVPASSVTVVPAALGADVGLLGSVLAARERAAGRGEWF
Ga0136617_109255871	3300017789	Polar Desert Sand	VAEHQPVHVLEPMRRAIAARAFRVPASSVTVVPAALGADVALLGSVLAARERAAGRGEWF
Ga0184619_101310451	3300018061	Groundwater Sediment	RVAADAVRVVPAALGRDVGMLGAVISVRERLAGRAEWFL
Ga0184619_103666772	3300018061	Groundwater Sediment	RAPAAAVRVVPAALGGDVGMLGAVFAARERLSGRGEWFL
Ga0066667_100879161	3300018433	Grasslands Soil	IADRAFKVAAAAVKIVPAALGRDVGMLGAVIYGRERVAGRDEWFR
Ga0066667_114949421	3300018433	Grasslands Soil	VAADAVRIVPPGLGRDVGMLGAVISVRERLAGRAEWFL
Ga0066669_103818731	3300018482	Grasslands Soil	AHTLEPMRRAIAARAFRVAAEAVRVVPAGLGRDVGMLGAVISVRERLAGRAEWFL
Ga0184642_15208202	3300019279	Groundwater Sediment	AIAARAFKVAAAAVRVVPASLGRDVGMLGAVIYAKERLSGRDEWFR
Ga0193725_10656052	3300019883	Soil	VAADAVRLVPPGLGRDVGMLGAVISVRERLAGRAEWFL
Ga0193730_11433791	3300020002	Soil	PMRRAIATRAFRVAADAVRLVPPGLGRDVGMLGAVISVRERLAGRAEWFL
Ga0193721_10111761	3300020018	Soil	VVGGSVAEHEPAHTLEPMRRAIAARAFKVAADAVRVVPAALGRDVGMLGAVISVRERLAGRAEWFL
Ga0210381_102703211	3300021078	Groundwater Sediment	EHEPAHTIEPMRRAIATRAFRVAADAVRLVPPRLGRDVGMLGAVISVRERLAGRAEWFL
Ga0210382_101253131	3300021080	Groundwater Sediment	RRAIAERAFRAPAAAVRVVPAALGGDVGMLGAVFAARERLSGRGEWFL
Ga0210382_104326191	3300021080	Groundwater Sediment	HTLEPMRRSIAERAFRVAAEAVRVVPASLGRDVGMLGAVISVRERLAGRAEWFL
Ga0193699_103688501	3300021363	Soil	ETMRRAITERAFRAPAAAVRVVPAALGGDVGMLGAVFAARERLSGRGEWFL
Ga0193714_10419171	3300023058	Soil	IVVGGSVAQHEPAHTLEPMRRAIAARAFKVAADAVRVVPAALGRDVGMLGAVISVRERLAGRADWFL
Ga0207662_105105982	3300025918	Switchgrass Rhizosphere	RAFKVAADAVRVVPAALGRDVGMLGAVISVRERLAGRADWFL
Ga0209438_12221452	3300026285	Grasslands Soil	IEPMRRAIATRAFRVAADAVRLVPPGLGRDVGMLGAVISVRERLAGRAEWFL
Ga0209027_11619301	3300026300	Grasslands Soil	AARAFRVAAEAVRVVPAGLGRDVGMLGAVISVRERLAGRAEWFL
Ga0209027_11786102	3300026300	Grasslands Soil	RVAAEAVRVVPAGLGRDVGMLGAVISVRERLAGRAEWFL
Ga0209238_11140112	3300026301	Grasslands Soil	MRRSIAERAFRVAAEAVRVVPAGLGRDVGMLGAVISVRERLAGRAEWFL
Ga0209239_10902861	3300026310	Grasslands Soil	RVAADAVRLVPPGLGRDVGMLGAVISARERLAGRGEWFL
Ga0209377_12265411	3300026334	Soil	AIDTRAFRVAADAVRLVPPGLGRDVGMLGAVISARERLAGRGEWFL
Ga0209804_11000273	3300026335	Soil	LEPMRRAIDTRAFRVAADAVRLVPPGLGRDVGMLGAVISARERLAGRGEWFL
Ga0209808_10652853	3300026523	Soil	PEHTLEVMRRAIAARAFKVAAAAVRILPAALGRDVGMLGAVIYARERRAGRDEWFR
Ga0209808_11666131	3300026523	Soil	DTRAFRVAADAVRLEPPGLGRDVGMLGAVISARERLAGRGEWFL
Ga0209806_13175682	3300026529	Soil	RAIDTRAFRVAADAVRLVPPGLGRDVGMLGAVISARERLAGRGEWFL
Ga0209157_10659993	3300026537	Soil	AFRVAADAVRLVPPGLGRDVGMLGAVISARERLAGRGEWFL
Ga0209180_101691762	3300027846	Vadose Zone Soil	DAVRLVPPGLGRDVGMLGAVISARERLAGRGEWFL
Ga0209283_104991632	3300027875	Vadose Zone Soil	HEPAHTLEPMRRAIDARAFRVAADSVRLVPAALGRDVGMLGAVISVRERLAGRAEWFL
Ga0209590_101832782	3300027882	Vadose Zone Soil	QPVHVLETMRRAIAERAFRAPAAAVRVVPAALGGDVGMLGAVFAARERLSGRGEWFL
Ga0209590_103788792	3300027882	Vadose Zone Soil	AAAVRVVPAALGRDVGMLGAVIYARERLAGRDEWFR
Ga0137415_100180056	3300028536	Vadose Zone Soil	AAVRLVPAALGADVGMYGAVLEARERASGRGDWFL
Ga0257175_10821441	3300028673	Soil	IDTRAFRVAADAVRLVPPGLGRDVGMLGAVISARERLAGRGEWFL
Ga0307320_102653451	3300028771	Soil	PAHTIEPMRRAIAARAFRVAADAVRLAPPGLGRDVGMLGAVISVRERLAGRAEWFL
Ga0307305_100526123	3300028807	Soil	AIAERAFRAPAAAVRVVPAALGGDVGMLGAVFAARERLSGRGEWFL
Ga0307292_100819141	3300028811	Soil	AEHEPAHTLEPMRRAIAARAFKVAADAVRVVPAALGRDVGMLGAVISVRERLAGRAEWFL
Ga0307296_101390793	3300028819	Soil	DAVRVVPAELGGDVGMLGAVFAARERLSGRGEWFL
Ga0307278_104859441	3300028878	Soil	TLEPMRNAITARAFKVAAAAVRVVPASLGRDVGMLGAVIYAKERLAGRDEWFR
Ga0307469_112490752	3300031720	Hardwood Forest Soil	MRRAIAARAFRVAADAVRLVPPGLGRDVGMLGAVISARERLAGRAEWFL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091670

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences