Basic Information | |
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Family ID | F091658 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 107 |
Average Sequence Length | 46 residues |
Representative Sequence | GSTASTPSNIQPHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCAC |
Number of Associated Samples | 78 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 4.81 % |
% of genes near scaffold ends (potentially truncated) | 84.11 % |
% of genes from short scaffolds (< 2000 bps) | 88.79 % |
Associated GOLD sequencing projects | 72 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (57.944 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (57.944 % of family members) |
Environment Ontology (ENVO) | Unclassified (79.439 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (57.944 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 14.58% β-sheet: 0.00% Coil/Unstructured: 85.42% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Vadose Zone Soil Tropical Forest Soil Soil Soil Forest Soil Soil Tropical Rainforest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0008090_157029921 | 3300005363 | Tropical Rainforest Soil | MRGSMASTPSNIQPHVYVWVGFRDHIVQRMEFNDHEDHEKNWNGADDCAC* |
Ga0066659_115577143 | 3300006797 | Soil | MRGSTASTPSNVQPHAYVCVGFRDHIVQRMEFDDHEDH |
Ga0126373_110003542 | 3300010048 | Tropical Forest Soil | VARLTIRGSTASTPSNSQPLAYVCVGFRDHIVQRMEFDDHEGHEKN* |
Ga0126373_114594471 | 3300010048 | Tropical Forest Soil | HAYVCIGFHDHIVQRMEFDDHEDHEKNWNDTDDCAC* |
Ga0126373_116243111 | 3300010048 | Tropical Forest Soil | HAYVCVGFRDHIVQRMEFDDHFDHQKNWNDADDCAC* |
Ga0126373_119419682 | 3300010048 | Tropical Forest Soil | QPHAYVCVGFRDHIVQRMEFDDHENHQKSWNDADDCAC* |
Ga0126373_123336382 | 3300010048 | Tropical Forest Soil | MRGSTSSTPSNINPHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCAC* |
Ga0126376_128926611 | 3300010359 | Tropical Forest Soil | KHQPHAYVCVGFRDHIVQRMEFDDHAVRQKNWNDTDDCAC* |
Ga0126372_122472222 | 3300010360 | Tropical Forest Soil | MRGSTALTPSNINPHAYVCVGFRDHIVQRMEFDDHEDHQKNWSDSDDCPC* |
Ga0126379_112482781 | 3300010366 | Tropical Forest Soil | VARLTMRGSTASTPSNIQPHVYVCVGFRDHIVQRMEFNDHEDHEKN |
Ga0126381_1009194121 | 3300010376 | Tropical Forest Soil | VTRLRVRGSTVSTPSNIQPHAYVCIGFRDHIVQRMEFDDHEDHEKNWNDTDDCAC* |
Ga0126381_1016620073 | 3300010376 | Tropical Forest Soil | PTNIQPHAYVCVGFRDHIVQRMEFDDHEDHQKNWNETDDCAC* |
Ga0126381_1034508402 | 3300010376 | Tropical Forest Soil | VARLTMRGSTASMPTNIQPHAYVCVGFRDHIVQRMEFDDNEDHDK |
Ga0126383_129472932 | 3300010398 | Tropical Forest Soil | STQSNINPHAYVCVGFRDHVVQRMEFDDHEDHDKNWNDTDDCAC* |
Ga0137397_100698421 | 3300012685 | Vadose Zone Soil | AYVCIGFRDHIVQRMEFDNHEDHQKSWNDTDDCAC* |
Ga0182041_122046522 | 3300016294 | Soil | AYVCVGFRDHIVQRMEFDDHENHQKNWNDTDDCAC |
Ga0182035_103099771 | 3300016341 | Soil | VARITMRGSTTSTPSNIQPHGYVCVGFRDHIVQRMEFDDHEDHQKNWNDADDCAC |
Ga0182035_110297261 | 3300016341 | Soil | TTAMPTNIQPHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCAC |
Ga0182035_113900392 | 3300016341 | Soil | TSSTPSNINPHAYVCVGFRDHIVQRMEFDDHEDHDKNWNDTDDCAC |
Ga0182035_120949471 | 3300016341 | Soil | TRLTMRGSTASSQRNIQPHAYICVGLRDKIVKRKEFDNHEDHQKNWNDTDDCAC |
Ga0182032_120635081 | 3300016357 | Soil | HAYVCVGFRDHIVQRMEFDDHEDYQKNWNDADDCGC |
Ga0182034_107189814 | 3300016371 | Soil | SVARLTMRGSTASTPSNIQPHAYVCVGFRDDIVQRMEFDDHEDHEKNWNDTDDCAC |
Ga0182040_118102492 | 3300016387 | Soil | LTMRGSTASTPTNIQPHVYVCVGFRDHIVQRMEFDDHEDHAKNWNDTNDCAC |
Ga0182037_105125251 | 3300016404 | Soil | IQPHAYVCIGYRDHIVHRMEFDDHAVRQKNWNDTDDCAC |
Ga0182039_112775352 | 3300016422 | Soil | NIQPHAYVCVGFRDHIVQRMEFDDHENHQKNWNDTDDCAC |
Ga0182039_114877492 | 3300016422 | Soil | FHSVARLTMRGSTSSTPTNINPHAYVCVGFRDHIVQRMEFDDHENHERNWNDTDDCAC |
Ga0182038_116623762 | 3300016445 | Soil | TMRGSTAPMPSNIQPHAYVCVGFRDHIVQRMEFDDHEDHERNWNDTDDCAC |
Ga0182038_117990541 | 3300016445 | Soil | PHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCAC |
Ga0210407_104602691 | 3300020579 | Soil | IRASTVSMPDNIQPHAYVCIGFRDHIVQRMEFDNHEDHQKSWNDTDDCAC |
Ga0210408_111212191 | 3300021178 | Soil | RGSAASLPGNLQPHGYVCVGFQDHIVQRMEFDDHEDHQRNWSDTDDCGC |
Ga0126371_116601443 | 3300021560 | Tropical Forest Soil | VARLTMRGSTASTPTNIQPHAYVCVGFRDHIVQRMEFDDHEDHQKNWNETDDCAC |
Ga0126371_124964391 | 3300021560 | Tropical Forest Soil | ISPHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCAC |
Ga0126371_132546912 | 3300021560 | Tropical Forest Soil | MRGSTSSTPSNINPHAYVCLGFRDHIVQRMEFDDHEDHDKNWNDTDDCAC |
Ga0170820_150057511 | 3300031446 | Forest Soil | RFHSVARLTMRGSTASMPSNIQPHAYVCVGFRDHIVQRMEFDDHEDHQKNWNDTDDCAC |
Ga0170818_1091772853 | 3300031474 | Forest Soil | TNIQPHAYVCVGFRDHIVQRMEFDDHEDHDKNWNDTDDCAC |
Ga0318534_104691233 | 3300031544 | Soil | INPHAYVCVGFRDHIVQRMEFDDHEDHDKNWNDTDDCAC |
Ga0318528_105482331 | 3300031561 | Soil | MRGSTSSTPSNINPHAYVCVGFRDHIVQRMEFDDHEDHDKNWNDTDDCAC |
Ga0318528_107945992 | 3300031561 | Soil | MRGSTASTPSNIQPHAYICVGFRDHIVQRMEFDNHEDHQKNWNDTDDCAC |
Ga0310915_103500233 | 3300031573 | Soil | AYVCVGFRDHIVQRMEFDNHEDHQKNWNDTDDCAC |
Ga0318555_101983683 | 3300031640 | Soil | TMRGSTASTPTNIQPHVYVCVGFRDHIVQRMEFDDHEDHAKNWNDTNDCAC |
Ga0318561_107683181 | 3300031679 | Soil | SVVRLRMRGSTVSTPSNIQPHAYVCIGYRDHIVQRMEFDDHEDHEKNWNDTDDCAC |
Ga0318572_101343353 | 3300031681 | Soil | MRGSTSSTPNNINPHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCDC |
Ga0318572_101874403 | 3300031681 | Soil | HSVARLTMRGSTASTPTNIQPHVYVCVGFRDHIVQRMEFDDHEDHAKNWNDTNDCAC |
Ga0318560_100335761 | 3300031682 | Soil | ASTPTNIQPHVYVCVGFRDHIVQRMEFDDHEDHAKNWNDTNDCAC |
Ga0318560_100442161 | 3300031682 | Soil | SNIQPHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCAC |
Ga0318496_101807133 | 3300031713 | Soil | PMPSNIQPHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDYAC |
Ga0306917_110938041 | 3300031719 | Soil | VPRLTMRRSTASTPTNIPPHAYVCVGFRDHIVQRMEFDDHEDHQKNWNDTDDCAC |
Ga0318493_106382901 | 3300031723 | Soil | VPRLYIRGITVSMPGNIQPHAYICIGFRDHIVQRMEFDDHAVRQKNWNDTDDCAC |
Ga0318500_100070661 | 3300031724 | Soil | PMPSNIQPHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCAC |
Ga0318500_102393443 | 3300031724 | Soil | RFHSVARLTMRGSTASTPTNIQPHVYVCVGFRDHIVQRMEFDDHEDHAKNWNDTNDCAC |
Ga0318501_108215122 | 3300031736 | Soil | HAYVCIGFRDHIVQRMEFDDHAVRQKNWNDTDDCAC |
Ga0306918_102121791 | 3300031744 | Soil | STVAMAGNIQPHANVCVGFRDHIVQRMEFDDHEDHQKNWNDTDDCAC |
Ga0306918_107767772 | 3300031744 | Soil | QPHTYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCAC |
Ga0318502_102402693 | 3300031747 | Soil | LTMRGSTVAMPGNIQPHAYVCVGFRDHIVQRMEFDDHEDHQKNWNDTDDCAC |
Ga0318492_106377062 | 3300031748 | Soil | PTNIQPHVYVCVGFRDHIVQRMEFDDHEDHAKNWNDTNDCAC |
Ga0318535_103257912 | 3300031764 | Soil | IPGNLQPHAYVCIGFRDHIVQRMEFDDHAVRQKNWNDTDDCAC |
Ga0318554_101996061 | 3300031765 | Soil | AKLTMRGSTASTPTNIQPHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCAC |
Ga0318546_100444102 | 3300031771 | Soil | MPGNIQPHAYLCVGFRDHIVQRMEFDDHEDHQKNWNDTDDCAC |
Ga0318546_101653423 | 3300031771 | Soil | VARLTMRGSTASTPTNIQPHVYVCVGFRDHIVQRMEFDDHEDHAKNWNDTNDCAC |
Ga0318566_102568881 | 3300031779 | Soil | RGSTTSTPSNIQPHAYVCVGFRDHIVQRMEFDDHEDHQKNWNDTDDCAC |
Ga0318552_104788401 | 3300031782 | Soil | LTMRGSTAPMPSNIQPHAYVCVGFRDHIVQRMEFDDHEDHEMNWNDTDDCAC |
Ga0318529_101810461 | 3300031792 | Soil | NIQPHAYVCVGFRDHIVQRMEFDDHEDHQKNWNDTDDCAC |
Ga0318548_103928602 | 3300031793 | Soil | TSSTSGNIQPHAYVCVGFRDHMVQRMEFDDHEDHQKNWNDTDDCAC |
Ga0318503_100645283 | 3300031794 | Soil | AYVCIGFRDHIVQRMEFDDHEDHEKNWNGTDDCAC |
Ga0318557_100194723 | 3300031795 | Soil | APMPSNIQPHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCAC |
Ga0318550_106464341 | 3300031797 | Soil | MRGSTASTPTNIQPHAYVCVGFRDHIVQRMEFDDHEDHQKNWNDTDDCAC |
Ga0318497_106443541 | 3300031805 | Soil | SGNIQPHAYVCVGFRDHIVQRMEFDDREDHQKNWNDTDDCAC |
Ga0318499_103907772 | 3300031832 | Soil | AYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCDC |
Ga0318517_104720132 | 3300031835 | Soil | LYIRGITVSILGNIQPHAYVCIGFRDHIVQRMEFDDHAVRQKNWNDTDDCAC |
Ga0318512_104989562 | 3300031846 | Soil | MRGSTSSTPNNINPHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCAC |
Ga0318527_101912561 | 3300031859 | Soil | VSTPSNIQPHAYVCIGYRDHIVQRMEFDDHEDHEKNWNDTDDCAC |
Ga0318544_100584753 | 3300031880 | Soil | MRGSTSSTPNNINPHAYVCVGFRDHIVQRMEFEDHEDHEKNWNDTDDCDC |
Ga0306925_104549001 | 3300031890 | Soil | NPHAYVCVGFRDHIVQRMEFDDHEDHDKNWNDTDDCAC |
Ga0306925_112837543 | 3300031890 | Soil | PGNIQPHAYVCVGFRDHIVQRMEFDNHEDHQKNWNDTDDCAC |
Ga0318536_101645802 | 3300031893 | Soil | STPNNINPHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCDC |
Ga0318536_105304691 | 3300031893 | Soil | SSTPTNINPHAYVCVGFRDHIVQRMEFDDHENHERNWNDTDACAC |
Ga0318551_103338633 | 3300031896 | Soil | MRGSTASTPSNIQPHAYICVGFRDHIVQRMEFDNHEDHQKNWN |
Ga0318551_105196721 | 3300031896 | Soil | ASTPSNIQPHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCAC |
Ga0318551_109599601 | 3300031896 | Soil | AYVCVGFRDHIVQRMEFDDHEDHQKNWNDTDDCAC |
Ga0306923_125160522 | 3300031910 | Soil | MRGSTVAMPGNIQPHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCAC |
Ga0306921_100286484 | 3300031912 | Soil | MRGSTVSTPSNIQPHAYVCAGFRDHIVQRMEFDDHEDYQKNWNDADDCGC |
Ga0306921_101130275 | 3300031912 | Soil | MRGSTASTPSNIQPHAYICVGFRDHIVQRMEFDDHEDHQKNLNDTDDCACQRLA |
Ga0306921_107502631 | 3300031912 | Soil | SNINPHAYVCVGFRDHIVQRMEFDDHEDHERNWNDTDDCAC |
Ga0310912_110081872 | 3300031941 | Soil | QPHAYVCIGFRDHIVQRMEFDDHAVRQKNWNDTDDCAC |
Ga0310913_102124971 | 3300031945 | Soil | PHVYVCVGFRDHIVQRMEFDDHEDHQKNWNDTDDCAC |
Ga0310913_107828061 | 3300031945 | Soil | STASTPTNIPPHAYVCVGFRDHIVQRMEFDDHEDHQKNWNDTDDCAC |
Ga0310910_103536191 | 3300031946 | Soil | LTMRGSTSSTPSNINPHAYVCVGFRDHIVQRMEFDDHEDHERNWNDTDDCAC |
Ga0306926_112710521 | 3300031954 | Soil | MRGSTVSTPSNIQPHAYVCVGFRDHIVQRMEFDDHEDYQKNWN |
Ga0318530_104778581 | 3300031959 | Soil | VPKLYIRGITVSIPGNIQPHAYVCIGFRDHIVQRMEFDDHAVRQKNWNDTDDCAC |
Ga0318531_100123084 | 3300031981 | Soil | AYICVGFRNHIVQRMEFDDHEDHDKNWNDTDDCAC |
Ga0306922_107241363 | 3300032001 | Soil | SVARITMRGSTASTPTNIQPHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCAC |
Ga0306922_121824862 | 3300032001 | Soil | INPHAYVCVGFRGHIVQRMEFDDHEDHEKNWSDADDCAC |
Ga0318559_101877361 | 3300032039 | Soil | PGNIQPHAYVCVGFRDHIVQRMEFDDHEDHQKNWNDTDDCAC |
Ga0318559_106231151 | 3300032039 | Soil | FHSVARLTMRGSTASTPTNIQPHVYVCVGFRDHIVQRMEFDDHEDHAKNWNDTNDCAC |
Ga0318545_103501791 | 3300032042 | Soil | RLTMRGSTVPTSSNIQPHAYVCVGFRDHIVQRMEFDDHEDNERNWHDTDDCAC |
Ga0318558_102511001 | 3300032044 | Soil | MRGSTSSTPNNINPHAYVCVGFRDHIVQRMEFDDHEDREKNWNHTDDCAC |
Ga0318570_103780351 | 3300032054 | Soil | TVRGSTVSTSSNIQPHAYVCVGFRDHIVQRMEFDDHQDHERNWNDTDDCAC |
Ga0318575_101975933 | 3300032055 | Soil | SPSCCVGFCDHIVQRMEFDDYEDHQKNWNDTDGCAC |
Ga0318533_102626193 | 3300032059 | Soil | MRGSTVSTPSNIQPHAYVCVGFRDHIVQRMEFDDHEDYQKNWNDADDCGC |
Ga0318505_101322251 | 3300032060 | Soil | YAVARLTMRGSTASTSTNIQPHAYVCVGFRDHIVQRMEFDDHEDHQKNWNDTDDCAC |
Ga0318514_107480981 | 3300032066 | Soil | RGSTVSTPSNIQPHAYVCIGYRDHIVQRMEFDDHEDHEKNWNGTDDCAC |
Ga0318524_105035382 | 3300032067 | Soil | IQPHAYVCIGFRDHIVQRMEFDDYAVRQKNWNDTDDCAC |
Ga0318525_105919112 | 3300032089 | Soil | VARLTMRGSTVSMPGNIQPHVYVCVGFRDHIVQRMEFDDHEDHQKNWNDTDDCAC |
Ga0318518_100781313 | 3300032090 | Soil | MRGSTASTPTNIQPHVYVCVGFRDHIVQRMEFDDHEDHAKNWNDTNDCAC |
Ga0318540_100463611 | 3300032094 | Soil | PSCCVGFCDHIVQRMEFDDYEDHQKNWNDTDGCAC |
Ga0310914_107409311 | 3300033289 | Soil | GSTASTPSNIQPHAYVCVGFRDHIVQRMEFDDHEDHEKNWNDTDDCAC |
Ga0310914_113429692 | 3300033289 | Soil | NIPPHAYVCVGFRDHIVQRMEFDDHEDHQKNWNDTDDCAC |
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