Metagenome / Metatranscriptome Family F091605

Basic Information
Family ID	F091605
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	54 residues
Representative Sequence	MPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDLGLVFAFTSPPLSRVSSL
Number of Associated Samples	89
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine (29.907 % of family members)
Environment Ontology (ENVO)	Unclassified (68.224 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (92.523 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 29.41% Coil/Unstructured: 70.59%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01557	FAA_hydrolase	3.74
PF07690	MFS_1	1.87
PF00465	Fe-ADH	0.93
PF06568	DUF1127	0.93
PF02515	CoA_transf_3	0.93
PF04214	DUF411	0.93
PF03918	CcmH	0.93
PF00589	Phage_integrase	0.93
PF03992	ABM	0.93
PF00266	Aminotran_5	0.93
PF00171	Aldedh	0.93
PF08734	GYD	0.93
PF01493	GXGXG	0.93
PF13091	PLDc_2	0.93
PF11325	DUF3127	0.93
PF13404	HTH_AsnC-type	0.93
PF09851	SHOCT	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.93
COG0337	3-dehydroquinate synthetase	Amino acid transport and metabolism [E]	0.93
COG0371	Glycerol dehydrogenase or related enzyme, iron-containing ADH family	Energy production and conversion [C]	0.93
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.93
COG1454	Alcohol dehydrogenase, class IV	Energy production and conversion [C]	0.93
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.93
COG1979	Alcohol dehydrogenase YqhD, Fe-dependent ADH family	Energy production and conversion [C]	0.93
COG3019	Uncharacterized metal-binding protein, DUF411 family	Function unknown [S]	0.93
COG3088	Cytochrome c-type biogenesis protein CcmH/NrfF	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.93
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.93
COG5457	Uncharacterized conserved protein YjiS, DUF1127 family	Function unknown [S]	0.93

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Pelagic	Environmental → Aquatic → Marine → Pelagic	32.71%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	24.30%
Coastal	Environmental → Aquatic → Marine → Coastal	14.02%
Oceanic	Environmental → Aquatic → Marine → Oceanic	10.28%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	9.35%
Unclassified	Environmental → Aquatic → Marine → Unclassified	6.54%
Inlet	Environmental → Aquatic → Marine → Inlet	2.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	32.71%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	17.76%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	14.02%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	10.28%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	9.35%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	6.54%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	6.54%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	2.80%

Habitat	Taxonomy	Distribution
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	29.91%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	17.76%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	10.28%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	9.35%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	8.41%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	5.61%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	3.74%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	3.74%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	2.80%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.87%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	1.87%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.93%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.93%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.93%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.93%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.93%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300001344	Pelagic Microbial community sample from North Sea - COGITO 998_met_02	Environmental	Open in IMG/M
3300001348	Pelagic Microbial community sample from North Sea - COGITO 998_met_04	Environmental	Open in IMG/M
3300001349	Pelagic Microbial community sample from North Sea - COGITO 998_met_10	Environmental	Open in IMG/M
3300001351	Pelagic Microbial community sample from North Sea - COGITO 998_met_03	Environmental	Open in IMG/M
3300003427	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA	Environmental	Open in IMG/M
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental	Open in IMG/M
3300006868	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA	Environmental	Open in IMG/M
3300007234	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA	Environmental	Open in IMG/M
3300009071	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405	Environmental	Open in IMG/M
3300009422	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138	Environmental	Open in IMG/M
3300009433	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330	Environmental	Open in IMG/M
3300009434	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516	Environmental	Open in IMG/M
3300009435	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413	Environmental	Open in IMG/M
3300009436	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome	Environmental	Open in IMG/M
3300009437	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414	Environmental	Open in IMG/M
3300009440	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512	Environmental	Open in IMG/M
3300009447	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509	Environmental	Open in IMG/M
3300009467	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530	Environmental	Open in IMG/M
3300009472	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404	Environmental	Open in IMG/M
3300009476	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407	Environmental	Open in IMG/M
3300009496	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524	Environmental	Open in IMG/M
3300009497	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503	Environmental	Open in IMG/M
3300009505	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523	Environmental	Open in IMG/M
3300009507	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607	Environmental	Open in IMG/M
3300009508	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412	Environmental	Open in IMG/M
3300009526	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90	Environmental	Open in IMG/M
3300009786	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126	Environmental	Open in IMG/M
3300016745	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041411BS metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016791	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041412BS metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental	Open in IMG/M
3300017950	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)	Environmental	Open in IMG/M
3300018036	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)	Environmental	Open in IMG/M
3300018041	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)	Environmental	Open in IMG/M
3300018048	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)	Environmental	Open in IMG/M
3300018417	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300020169	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1	Environmental	Open in IMG/M
3300020177	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041402US metaG (spades assembly)	Environmental	Open in IMG/M
3300020178	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041405US metaG (spades assembly)	Environmental	Open in IMG/M
3300020182	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2	Environmental	Open in IMG/M
3300020188	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041411US metaG (spades assembly)	Environmental	Open in IMG/M
3300020191	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly)	Environmental	Open in IMG/M
3300020335	Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035)	Environmental	Open in IMG/M
3300020810	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041404US metaG (spades assembly)	Environmental	Open in IMG/M
3300021185	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015	Environmental	Open in IMG/M
3300021375	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132	Environmental	Open in IMG/M
3300021389	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300022921	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG	Environmental	Open in IMG/M
3300022926	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG	Environmental	Open in IMG/M
3300023109 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG	Environmental	Open in IMG/M
3300024192	Seawater microbial communities from Monterey Bay, California, United States - 47D	Environmental	Open in IMG/M
3300024221	Seawater microbial communities from Monterey Bay, California, United States - 80D	Environmental	Open in IMG/M
3300024255 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG	Environmental	Open in IMG/M
3300024267	Seawater microbial communities from Monterey Bay, California, United States - 28D	Environmental	Open in IMG/M
3300024293	Seawater microbial communities from Monterey Bay, California, United States - 63D	Environmental	Open in IMG/M
3300024335	Seawater microbial communities from Monterey Bay, California, United States - 90D	Environmental	Open in IMG/M
3300025590	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420 (SPAdes)	Environmental	Open in IMG/M
3300025617	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes)	Environmental	Open in IMG/M
3300025626	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)	Environmental	Open in IMG/M
3300025636	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes)	Environmental	Open in IMG/M
3300025641	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes)	Environmental	Open in IMG/M
3300025680	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes)	Environmental	Open in IMG/M
3300025690	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331 (SPAdes)	Environmental	Open in IMG/M
3300025695	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)	Environmental	Open in IMG/M
3300025696	Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)	Environmental	Open in IMG/M
3300025699	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 (SPAdes)	Environmental	Open in IMG/M
3300025809	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)	Environmental	Open in IMG/M
3300025810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025816	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)	Environmental	Open in IMG/M
3300025849	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)	Environmental	Open in IMG/M
3300025869	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes)	Environmental	Open in IMG/M
3300025876	Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)	Environmental	Open in IMG/M
3300025881	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)	Environmental	Open in IMG/M
3300025892	Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)	Environmental	Open in IMG/M
3300025897	Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)	Environmental	Open in IMG/M
3300027752	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)	Environmental	Open in IMG/M
3300027780	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)	Environmental	Open in IMG/M
3300028127	Seawater microbial communities from Monterey Bay, California, United States - 49D	Environmental	Open in IMG/M
3300028129	Seawater microbial communities from Monterey Bay, California, United States - 42D	Environmental	Open in IMG/M
3300028196	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m	Environmental	Open in IMG/M
3300031594	Marine microbial communities from Western Arctic Ocean, Canada - CB9_20m	Environmental	Open in IMG/M
3300031599	Marine microbial communities from water near the shore, Antarctic Ocean - #71	Environmental	Open in IMG/M
3300031622	Marine microbial communities from Western Arctic Ocean, Canada - CB4_20m	Environmental	Open in IMG/M
3300031626	Marine microbial communities from Western Arctic Ocean, Canada - CB21_surface	Environmental	Open in IMG/M
3300031637	Marine microbial communities from Western Arctic Ocean, Canada - CBN3_32.1	Environmental	Open in IMG/M
3300031706	Marine microbial communities from David Island wharf, Antarctic Ocean - #36	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_102208391	3300000101	Marine	MPDXFVEDXSXGELGDFGXXGLGTDAIAFPTRDLG
JGI20152J14361_100977852	3300001344	Pelagic Marine	MPDVFVEDGSGGELGAFGDFGILGLGADAIAFPTRDLGLVFAFTSPPLSRVSSLLARK
JGI20154J14316_101571382	3300001348	Pelagic Marine	MPSVFLEDGSGVELGDFGILGLGTDAIAFPKRDLGLVFAFTSPPLSRVSSLLARKLAVL
JGI20160J14292_101659991	3300001349	Pelagic Marine	LRRSKSACDVAILVAVGIPDVFVEDGSGGELGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVSSLLVRKLAVLAKVLM
JGI20153J14318_101705781	3300001351	Pelagic Marine	MPSVFLEDGSGVELGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVSSLLARKLAVL
JGI26084J50262_10279931	3300003427	Marine	MLVAVGMPDVFVEDRSGGELGDFGLLGLGTEAIAFPTRDFGLVFAFTSPPLSRVSSLLAR
Ga0075467_102517203	3300006803	Aqueous	LRRSKSACDVDVLIAVGIPDVFVDDGSVGELDVDVGGALGLGTDAMDLPMRDFGLLFACTSPPLSRVSSLLARKL*
Ga0075481_102538081	3300006868	Aqueous	MPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDLGLVFAFTSPPLSRVSSLLARKLAVLA
Ga0075460_101582411	3300007234	Aqueous	MLVAVGMPDVFVEDGSGGELGAFGDFGHFGILGLGTDAVAFPTRDLGLVF
Ga0115566_106728721	3300009071	Pelagic Marine	MPSVFLEDGSGVELGDFGILGLGTDAIAFPTRDLGLLLALTFPPLSR
Ga0114998_105982301	3300009422	Marine	MPDVFVEDGSGGELGDFGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVSSLLVRKLAVLAKVLMSS
Ga0115545_13242312	3300009433	Pelagic Marine	MPDIFVEDGSGGELGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVS
Ga0115562_10258043	3300009434	Pelagic Marine	MPDIFVEDGSGGELGDFGRLGLGTEAIAFPTRDFGLVFAFTSPPLSRVSSLLARKLAVL
Ga0115546_13469911	3300009435	Pelagic Marine	MPSVFLEDGSGVELGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVSSLLARKLAV
Ga0115008_112886901	3300009436	Marine	MPDVFVEDGSGGELGDFGDFGDFGILGLGTDAIAFPKRDLGLLLALTFPLLSFVSSLLAR
Ga0115556_10070118	3300009437	Pelagic Marine	MPDVFVEDGSGGELGDFGDFGILGLGTDAIAFPKRDLGLLLALT
Ga0115561_12069511	3300009440	Pelagic Marine	MPDVFVEDGSGGELGDFGDFGILGLGTDAIAFPKRDLGLLLALTFPL
Ga0115560_10255031	3300009447	Pelagic Marine	MPDVFVEDGSGGELGDFGILGLGTEAIAFPKRDLGLVFAF
Ga0115565_100217761	3300009467	Pelagic Marine	MLDVFVEDGSGGELGAFGILGLGTDAIAFPIRDFGCFLA
Ga0115554_10079911	3300009472	Pelagic Marine	MPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDLGLVFAFTSPPLSRVSSL
Ga0115554_14450931	3300009472	Pelagic Marine	LVAVGMPDVFVEDGSGGELGDFGILGLGTDAIAFPKRDLGLVFAFTSPPLSRVSSLLA*
Ga0115555_10539751	3300009476	Pelagic Marine	MPDIFVEDGSGGELGDFGLLGLGTEAIAFPTRDFGLVF
Ga0115570_102511611	3300009496	Pelagic Marine	MPDVFVEDGSGGELGDFGILALGTDAIAFPMRDLGLFFA
Ga0115569_104137101	3300009497	Pelagic Marine	MPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDLGLVFAFTS
Ga0115569_104178941	3300009497	Pelagic Marine	MPDVFVEDGSGGELGAFGDFGILGLGTDAIAFPKRDLGLLLALTFPLL
Ga0115564_100974051	3300009505	Pelagic Marine	MPDVFVEDGSGGELGDFGILGLGTDAIAFPKRDLGLVFAFTSPPLS
Ga0115564_103961581	3300009505	Pelagic Marine	MPDVFVEDGSGGELGVVGGLGLGTVEMAFPTRDLGLVFAFTSPPLSRVSSLL
Ga0115564_105546831	3300009505	Pelagic Marine	MLVAVGMPDVFVEDRSGGELDDFGILGLGTDAIAFPTRDLGLVFAFTSPPLSR
Ga0115572_107983011	3300009507	Pelagic Marine	MPDIFVEDGSGGQLGDFGILGLGTDAIAFPTRDLGLLLAL
Ga0115567_105930421	3300009508	Pelagic Marine	MPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDLGLV
Ga0115004_102759471	3300009526	Marine	MPDVFVEDGSGGELGDFGILALGTDAIAFPTRDLGLLLALTFPLLSFVSSLLVRKLAVLA
Ga0114999_109198912	3300009786	Marine	MPDVFVEDGSGGELGAFGILGLGTDAIAFPTRDFGCFLALTSPPLSRV
Ga0182093_12421371	3300016745	Salt Marsh	MPDVFAEDGSGGELGDFGILGLGTEAIAFPTRDFGLFFAFTSPPLSR
Ga0182095_10584021	3300016791	Salt Marsh	MLVAVGMPDVFVYDGSGGELGDFGLLGLGTDAIAFSTRDLGLVFAFTSPPLSRVSSLLARKLAVLAKV
Ga0180120_100839742	3300017697	Freshwater To Marine Saline Gradient	MPDVFVEDGSGGELGAFGDFGDFGILGLGTDAIAFR
Ga0181607_102592151	3300017950	Salt Marsh	MPDIFVEDGSGGELGDFGLLGLGTEAIAFPTRDFGLVFAFTS
Ga0181607_106231051	3300017950	Salt Marsh	MLVAVGMPDVFVEDGSDGELGNFGKLGLGTDAIAFPTRDLGLVFAFTSPPLSR
Ga0181600_101185392	3300018036	Salt Marsh	MPDVFVEDRSDGELGDFGDFGDFGILGLGTDAIAFPTRDLGLVFAFTSPPLS
Ga0181601_103155681	3300018041	Salt Marsh	LRRSKSACDVAILVAVGIPDIFVEDGSGGELGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVSSLLVRKLAVLAKVLMS
Ga0181606_101300111	3300018048	Salt Marsh	MPDVFVEDRSDGELGDFGDFGDFGILGLGTDAIAFPTRDLGLVFAFTSPPLSRVSSLLARKLAV
Ga0181606_105887942	3300018048	Salt Marsh	MLVAVGMPDVFVEDRSGGELGDFGLLGLGTEAIAFP
Ga0181558_106681771	3300018417	Salt Marsh	MPDVFVEDGSGGELGDFGLLGLGTDAIAFPTRDLGLVFAFTSPPLSRLSSLLTRKL
Ga0206127_10120831	3300020169	Seawater	MPDVFVEDGSGGELGDFGDFGLLGLGTDAIAFPTRDLGLVFAFTSPPLSRVSSL
Ga0206127_12446372	3300020169	Seawater	MPDVFVEDGSGGELGVVGGLGLGTVEMALPMRDLGLFLASTSPPLSRVSSLL
Ga0181596_100285431	3300020177	Salt Marsh	MLVAVGMPDVFVYDGSGGELGDFGLLGLGTDAIAFSTRDLGLVFAFTSPPLSRVSSLLARKL
Ga0181596_102341911	3300020177	Salt Marsh	MPSVFLEDGSGVELGDFGILGLGTDAIAFPTRDLGLLLALTF
Ga0181596_102598931	3300020177	Salt Marsh	MPDVFVEDRSDGELGDFGDFGDFGILGLGTDAIAFPTRDLGLVFAFTSPPLSRVSSLLARKL
Ga0181599_12254861	3300020178	Salt Marsh	LRRSKSACDVAILVAVGIPDIFVEDGSGGELGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVSSLLARKLAV
Ga0206129_100053931	3300020182	Seawater	MPDVFVEDGSGGELGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVSSLLVRKLAVLAKVLMSST
Ga0181605_103414751	3300020188	Salt Marsh	MPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDFGLV
Ga0181604_102439611	3300020191	Salt Marsh	VAVGIPDVFIEYGSGGELGDFGLLGLGTEAIAFPTRDFGLFFAFTSPPLSRVSSLLA
Ga0211690_10775762	3300020335	Marine	MPDIFVEDGLGGELGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVSSLLVRKLAVLEKVLMSSMA
Ga0181598_10725782	3300020810	Salt Marsh	MPDVFVEDRSDGELGDFGDFGDFGILGLGTDAIAFPTRDLGLVFAFTSPPLSRVSSLLAR
Ga0181598_12191581	3300020810	Salt Marsh	MLVAVGMPDVFVYDGSGGELGDFGLLGLGTDAIAFSTRDLGLVFAFTSPPLSRVSSLLARKLAVLAK
Ga0206682_104303791	3300021185	Seawater	LRRSKSACDVAILVAVGIPDVFVEDGSGGELGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVSSLLVRKLAVLAK
Ga0213869_100735355	3300021375	Seawater	LRRSKSACDVAILVAVGMPDIFVEDGSGGELGDFGILGLGTDAIAFPTRDLGLRLALTFPLLSLASSLLAR
Ga0213868_106481441	3300021389	Seawater	MPDVFVDDGSGGELGDFGLLGLGTDAVAFPTRDLGLVFAFTSPPLSRVSSL
Ga0222718_105798841	3300021958	Estuarine Water	MLVAVGMPDVFVKDGSDGELGNFGILGLGTDAIAFPTRDLGLVFAFTSPPLSRVSSLLARKLAVLA
Ga0222716_103154041	3300021959	Estuarine Water	MLVAVGMPDVFVKDGSDGELGNFGILGLGTDAIAFPTRDLGLVFAFTSPPLS
Ga0222716_105530571	3300021959	Estuarine Water	MLVAVGMPDVFVEDRSGGELGDFGILGLGTDAIAFPTRDFGLVFAFTSPPLSRVSSLLARKLAVLA
Ga0222715_104439921	3300021960	Estuarine Water	MPDVLVEDGSGGELGAFGDFGDFGILGLGTDAIAFPKRDLGLLLALTFP
Ga0255765_13754972	3300022921	Salt Marsh	MPSVFLEDGSGVELGDFGILGLGTDAIAFPTRDLG
Ga0255753_12955162	3300022926	Salt Marsh	MLVAVGMPDVFVEDRSGGELGDFGLLGLGTEAIAFPTRDFGLVFAFTSPPLSRVS
(restricted) Ga0233432_104719941	3300023109	Seawater	MPDVFVEDGSGGELGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVSSLLARKL
Ga0228637_10916601	3300024192	Seawater	LRRSKSACDVAILVAFGIPDVFVEDGSGLELGEFGAFCILGLGTDAIAFPTRDLGLLFALTSPPLSRVSSLLARKLAVLAKV
Ga0228666_10632951	3300024221	Seawater	MLVAVGMPDVFVYDGSGGELGDFGLLGLGTDAIAFSTRDLGLVF
(restricted) Ga0233438_100089808	3300024255	Seawater	MPDIFVEDGSGGELGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVSS
Ga0228623_10884241	3300024267	Seawater	MPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDFGLVFAFT
Ga0228651_10537791	3300024293	Seawater	MPDIFVEDGSGGELGDFGILGLGTDAIALPMRDLGLLLALTFPLLSFVSSLFVRKL
Ga0228672_10015801	3300024335	Seawater	MLVAVGMPDVFVYDGSGGELGDFGLLGLGTDAIAFP
Ga0209195_10975072	3300025590	Pelagic Marine	MPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDLGLVF
Ga0209138_11338162	3300025617	Marine	MPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDFGLVFAFTSPPLSRDSTPNSPTLTVAP
Ga0209716_11153451	3300025626	Pelagic Marine	MPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDFALVFTFTSPPLS
Ga0209136_10802332	3300025636	Marine	LRRSKSACDVAILVAVGIPDVFVEDGSGGELGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVSNLFVRKLAVLAKVLMSST
Ga0209136_11315251	3300025636	Marine	LRRSKSACDVAILVAVGVPDVFVEDGLGGELGDFGILALGTDAIAFPMRDLGLFFAFTSPPLILVSSLLARKLAVLAKV
Ga0209136_11775682	3300025636	Marine	MPSVFLEVRSGGELGDFGIPGLGTDAIAFPMRDLGLFFAFTSPPLILV
Ga0209833_11338121	3300025641	Pelagic Marine	MPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDLGL
Ga0209306_12094961	3300025680	Pelagic Marine	MPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDLGLVFAFTSPPLSR
Ga0209505_11777461	3300025690	Pelagic Marine	MPSVFLEDGSGVELGDFGILGLGTDAIAFPKRDLGLVFAFTSPPLSRVSSLLARKLAVLA
Ga0209653_11509661	3300025695	Marine	MLVAVGMPDLFVEDGSDGELGNFGILGLGTDAIAFPTRDLGLVFAFTSPPLSRVSSLLARKLA
Ga0209532_10298674	3300025696	Pelagic Marine	MPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDFGL
Ga0209715_11688931	3300025699	Pelagic Marine	MLVAVGMPDVFVEDGSDGELGNFGILGLGTDAIAFPTRDLGLVFAFTSP
Ga0209199_11268561	3300025809	Pelagic Marine	MPDVFVEDGSGGELGDFGILGLGTDAIAFPKRDLGLVFAFTS
Ga0209199_12555401	3300025809	Pelagic Marine	MLVAIGMPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDFGL
Ga0209199_12970381	3300025809	Pelagic Marine	MLVAVGMPDVLVEDGSGDELGDFDILGLGTDAIAFPTRDLGLVFAFTSPPLSRVSSLLARKLA
Ga0208543_11236261	3300025810	Aqueous	MLVAVGMPDVFVEDRSGGELGDFGLLGLGTEAIAFPTRDFGLVFA
Ga0209193_11339771	3300025816	Pelagic Marine	MPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDLGLVFAF
Ga0209603_12377261	3300025849	Pelagic Marine	MPDVFVEDGSGGELGDFGDFGILGLGTDAIAFPKRDLGLLLALTFPLLSFVSSLL
Ga0209308_101526001	3300025869	Pelagic Marine	MPDVFVEDGSGGELGAFGDFGDFGILGLGTDAIAFPKRDLGLLLALTFPLLSF
Ga0209223_102466161	3300025876	Pelagic Marine	MPDVFVEDGSGGELGAFGDFGILGLGADAIAFPTRDLGLVFAFTSPPLSRVSS
Ga0209309_100646043	3300025881	Pelagic Marine	MPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDLGLVFAFTSPPLSRVSSLLA
Ga0209630_104067392	3300025892	Pelagic Marine	LRRSKSACDVAILVAVGMPDIFVEDGSGGELGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVSSLLVRKLAVLA
Ga0209425_102802341	3300025897	Pelagic Marine	MPDVFVEDGSGGELGDFGDFGILGLGTDAIAFPKRDLGLLLALTFP
Ga0209425_105047181	3300025897	Pelagic Marine	MPDVFVEDGSGGELGAFGDFGDFGILGLGTDAIAFPKRDLGLLLALTFP
Ga0209192_100091051	3300027752	Marine	MPDVFVEDGSGGELGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVSNLLVRKLAVL
Ga0209502_101293182	3300027780	Marine	MPDVFVEDGSGGELGDFGILALGTDAIAFPTRDLGLLLALTFPLLSFVSSLLVRKLAVLAKIF
Ga0209502_102876731	3300027780	Marine	MPDVFVEDGSGGELGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVSSLLVRKLAVLAKIF
Ga0233401_10650651	3300028127	Seawater	MPDVFVEDGSGGELGDFGLLGLGTEAIAFPTRDFGLVFA
Ga0228634_10775691	3300028129	Seawater	MPDVLVEDGSGGELGAFGDFGDFGILGLGTDAIAFPKRDLGLLLALTFPLLSFVSSLLARKLAVLAKVLMSST
Ga0228634_11080121	3300028129	Seawater	LRRSKSACDVAILVAVGIPDVFVEDGSGGELGDFGILGLGTDAIAFPTRDLGLLLALTFPLLSFVSSLLVRKLAVLAKVLMSST
Ga0257114_12352901	3300028196	Marine	MLVAVGMPDVFVYDGSGGELGDFGLLGLGTDAIAFSTRDLGLVFAFTSPPLSRVSSLLARKLAVLAKVLMSST
Ga0302131_11759711	3300031594	Marine	LRRSKSACDVAILVAVGIPDVFVEDGSGGELGAFGILALGTDAIAFPTRDLGLLLALTFPLLSFVSNLFVRKLAV
Ga0308007_102591471	3300031599	Marine	MPDVFVEDGSGGELGVVGGLGLGTVEMALPMRDLGLFLASTSPPLSRVSSLLAR
Ga0302126_101908601	3300031622	Marine	MPDVFVEDGSGGELGDFGILGLGTDAIAFPTRDLGLL
Ga0302121_100825701	3300031626	Marine	MPDVFVEDGSGGELGDFGILALGTDAIAFPTRDLGLLLALTFPLLSFVSN
Ga0302138_100472021	3300031637	Marine	DIFVEDGSGGELGDFGDFGILGLGTDAIAFPTRDLGLLLALTFPHHITPPRCPRATP
Ga0307997_103482371	3300031706	Marine	MPDVFVDDGSGGELGVGGALGLGTDAIALPMRDFGLFFACTSPPLSRVSS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091605

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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