NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F091581

Metagenome / Metatranscriptome Family F091581

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091581
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 45 residues
Representative Sequence VVKAVQAAGKPAARKIYKDLTTTETPFNGRGTENLVILKAW
Number of Associated Samples 87
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.93 %
% of genes near scaffold ends (potentially truncated) 94.39 %
% of genes from short scaffolds (< 2000 bps) 83.18 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (69.159 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(25.234 % of family members)
Environment Ontology (ENVO) Unclassified
(62.617 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(76.636 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 40.58%    β-sheet: 0.00%    Coil/Unstructured: 59.42%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.23
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF04055Radical_SAM 19.63
PF16473Rv2179c-like 15.89
PF13394Fer4_14 1.87
PF13353Fer4_12 0.93
PF08722Tn7_TnsA-like_N 0.93



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A69.16 %
All OrganismsrootAll Organisms30.84 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000115|DelMOSum2011_c10119524Not Available827Open in IMG/M
3300000553|TBL_comb47_HYPODRAFT_10131554Not Available1137Open in IMG/M
3300000864|OpTDRAFT_1025287All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage623Open in IMG/M
3300001851|RCM31_10169716Not Available532Open in IMG/M
3300002141|M3t6BS1_1187965All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage635Open in IMG/M
3300002408|B570J29032_108936808All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage545Open in IMG/M
3300002408|B570J29032_109037676Not Available574Open in IMG/M
3300002408|B570J29032_109067058All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage583Open in IMG/M
3300002408|B570J29032_109506387Not Available820Open in IMG/M
3300002835|B570J40625_100335463Not Available1507Open in IMG/M
3300002835|B570J40625_100406658All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1320Open in IMG/M
3300003277|JGI25908J49247_10126386All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage604Open in IMG/M
3300003388|JGI25910J50241_10017204All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2557Open in IMG/M
3300003388|JGI25910J50241_10040390Not Available1514Open in IMG/M
3300003393|JGI25909J50240_1007473Not Available2712Open in IMG/M
3300003411|JGI25911J50253_10010087Not Available3582Open in IMG/M
3300004123|Ga0066181_10203707All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage562Open in IMG/M
3300004793|Ga0007760_11033357Not Available527Open in IMG/M
3300005517|Ga0070374_10127044Not Available1326Open in IMG/M
3300005525|Ga0068877_10350349Not Available843Open in IMG/M
3300005582|Ga0049080_10185620Not Available690Open in IMG/M
3300006805|Ga0075464_11048237Not Available513Open in IMG/M
3300007722|Ga0105051_10322302Not Available1162Open in IMG/M
3300008107|Ga0114340_1003795Not Available8345Open in IMG/M
3300008110|Ga0114343_1192718All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage599Open in IMG/M
3300008113|Ga0114346_1143653Not Available1029Open in IMG/M
3300008448|Ga0114876_1241949All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage568Open in IMG/M
3300009077|Ga0115552_1396800All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage544Open in IMG/M
3300009152|Ga0114980_10342489Not Available863Open in IMG/M
3300009154|Ga0114963_10122143Not Available1570Open in IMG/M
3300009158|Ga0114977_10435889Not Available725Open in IMG/M
3300009159|Ga0114978_10183023Not Available1333Open in IMG/M
3300009159|Ga0114978_10477767All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage735Open in IMG/M
3300009159|Ga0114978_10524111Not Available693Open in IMG/M
3300009163|Ga0114970_10067361Not Available2272Open in IMG/M
3300009164|Ga0114975_10506394Not Available650Open in IMG/M
3300009437|Ga0115556_1152339Not Available852Open in IMG/M
3300009443|Ga0115557_1199277Not Available785Open in IMG/M
3300010157|Ga0114964_10261404Not Available823Open in IMG/M
3300010157|Ga0114964_10625185All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage505Open in IMG/M
3300010160|Ga0114967_10176935Not Available1165Open in IMG/M
3300010340|Ga0116250_10549213Not Available648Open in IMG/M
3300010356|Ga0116237_11286019Not Available605Open in IMG/M
3300010885|Ga0133913_10298977Not Available4266Open in IMG/M
3300010885|Ga0133913_11243130All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1907Open in IMG/M
3300013005|Ga0164292_10486617All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage810Open in IMG/M
3300013014|Ga0164295_10414893All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1026Open in IMG/M
3300013014|Ga0164295_10782589Not Available738Open in IMG/M
(restricted) 3300013127|Ga0172365_10563953All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage653Open in IMG/M
3300013372|Ga0177922_10719208Not Available549Open in IMG/M
3300013372|Ga0177922_10750442Not Available599Open in IMG/M
3300017722|Ga0181347_1180333Not Available563Open in IMG/M
3300017723|Ga0181362_1031300Not Available1132Open in IMG/M
3300017778|Ga0181349_1096371Not Available1111Open in IMG/M
3300017780|Ga0181346_1007727Not Available4641Open in IMG/M
3300017784|Ga0181348_1057447All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1581Open in IMG/M
3300017784|Ga0181348_1076388Not Available1334Open in IMG/M
3300017785|Ga0181355_1095407All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1233Open in IMG/M
3300018682|Ga0188851_1037273All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage518Open in IMG/M
3300019784|Ga0181359_1023864Not Available2331Open in IMG/M
3300019784|Ga0181359_1028433Not Available2152Open in IMG/M
3300020048|Ga0207193_1076851Not Available3213Open in IMG/M
3300020160|Ga0211733_10376925Not Available513Open in IMG/M
3300020161|Ga0211726_10516370Not Available1029Open in IMG/M
3300020161|Ga0211726_10985042Not Available842Open in IMG/M
3300020162|Ga0211735_10359633Not Available720Open in IMG/M
3300020162|Ga0211735_10783920Not Available740Open in IMG/M
3300020172|Ga0211729_10712318All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage887Open in IMG/M
3300020172|Ga0211729_10974629Not Available1228Open in IMG/M
3300020205|Ga0211731_10802500Not Available714Open in IMG/M
3300021519|Ga0194048_10282085All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage601Open in IMG/M
3300021956|Ga0213922_1110146Not Available549Open in IMG/M
3300021962|Ga0222713_10723561Not Available565Open in IMG/M
3300022164|Ga0212022_1054887Not Available615Open in IMG/M
3300022190|Ga0181354_1147852Not Available737Open in IMG/M
3300022190|Ga0181354_1194387Not Available608Open in IMG/M
3300022407|Ga0181351_1025165Not Available2527Open in IMG/M
3300022555|Ga0212088_10833290All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage527Open in IMG/M
3300023184|Ga0214919_10528755Not Available717Open in IMG/M
3300025091|Ga0209616_1028625Not Available566Open in IMG/M
3300027285|Ga0255131_1037648Not Available877Open in IMG/M
3300027295|Ga0255126_1093654Not Available536Open in IMG/M
3300027679|Ga0209769_1019105Not Available2429Open in IMG/M
3300027707|Ga0209443_1182140Not Available748Open in IMG/M
3300027707|Ga0209443_1290148Not Available546Open in IMG/M
3300027708|Ga0209188_1064121All Organisms → Viruses → Predicted Viral1578Open in IMG/M
3300027708|Ga0209188_1148999All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage885Open in IMG/M
3300027736|Ga0209190_1040275Not Available2433Open in IMG/M
3300027741|Ga0209085_1059718Not Available1747Open in IMG/M
3300027782|Ga0209500_10440810All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage514Open in IMG/M
3300027798|Ga0209353_10006903Not Available5671Open in IMG/M
3300027892|Ga0209550_10275645Not Available1097Open in IMG/M
(restricted) 3300027977|Ga0247834_1035505Not Available3005Open in IMG/M
3300031784|Ga0315899_11387169All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage596Open in IMG/M
3300031884|Ga0316220_1108657All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1039Open in IMG/M
3300031963|Ga0315901_10308436Not Available1308Open in IMG/M
3300032116|Ga0315903_10503989Not Available955Open in IMG/M
3300032116|Ga0315903_10555498Not Available893Open in IMG/M
3300034061|Ga0334987_0042397Not Available3854Open in IMG/M
3300034066|Ga0335019_0729620All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage566Open in IMG/M
3300034071|Ga0335028_0714596All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage523Open in IMG/M
3300034093|Ga0335012_0264225Not Available887Open in IMG/M
3300034102|Ga0335029_0004463All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage11110Open in IMG/M
3300034116|Ga0335068_0109784Not Available1536Open in IMG/M
3300034200|Ga0335065_0855045All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage505Open in IMG/M
3300034283|Ga0335007_0087665All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2329Open in IMG/M
3300034284|Ga0335013_0353554Not Available918Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake25.23%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake16.82%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater13.08%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater9.35%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater3.74%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater3.74%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton2.80%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine2.80%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater1.87%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater1.87%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater1.87%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous1.87%
Anaerobic Digestor SludgeEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge1.87%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic0.93%
Anoxic Zone FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater0.93%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.93%
Freshwater Lake HypolimnionEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion0.93%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.93%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment0.93%
Marine PlanktonEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton0.93%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.93%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater0.93%
FreshwaterEnvironmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater0.93%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.93%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine0.93%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.93%
MarineEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine0.93%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000553Trout Bog Lake May 28 2007 Hypolimnion (Trout Bog Lake Combined Assembly 47 Hypolimnion Samples, Aug 2012 Assem)EnvironmentalOpen in IMG/M
3300000864Marine plume microbial communities from the Columbia River - Metatranscriptome 25 PSUEnvironmentalOpen in IMG/M
3300001851Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3bEnvironmentalOpen in IMG/M
3300002141M3t6BS1 (103f)EnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300003388Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SNEnvironmentalOpen in IMG/M
3300003393Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DDEnvironmentalOpen in IMG/M
3300003411Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SDEnvironmentalOpen in IMG/M
3300004123Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SD (version 2)EnvironmentalOpen in IMG/M
3300004793Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005517Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)EnvironmentalOpen in IMG/M
3300005525Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaGEnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300006805Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNAEnvironmentalOpen in IMG/M
3300007722Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (megahit assembly)EnvironmentalOpen in IMG/M
3300008107Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NAEnvironmentalOpen in IMG/M
3300008110Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NAEnvironmentalOpen in IMG/M
3300008113Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NAEnvironmentalOpen in IMG/M
3300008448Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigsEnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009154Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaGEnvironmentalOpen in IMG/M
3300009158Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaGEnvironmentalOpen in IMG/M
3300009159Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaGEnvironmentalOpen in IMG/M
3300009163Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaGEnvironmentalOpen in IMG/M
3300009164Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaGEnvironmentalOpen in IMG/M
3300009437Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414EnvironmentalOpen in IMG/M
3300009443Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421EnvironmentalOpen in IMG/M
3300010157Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaGEnvironmentalOpen in IMG/M
3300010160Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaGEnvironmentalOpen in IMG/M
3300010340AD_USOAcaEngineeredOpen in IMG/M
3300010356AD_USDEcaEngineeredOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013014Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaGEnvironmentalOpen in IMG/M
3300013127 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cmEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017723Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300018682Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1EnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020160Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1EnvironmentalOpen in IMG/M
3300020161Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1EnvironmentalOpen in IMG/M
3300020162Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020205Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1EnvironmentalOpen in IMG/M
3300021519Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5mEnvironmentalOpen in IMG/M
3300021956Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MGEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300022164Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)EnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300022555Alinen_combined assemblyEnvironmentalOpen in IMG/M
3300023184Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503EnvironmentalOpen in IMG/M
3300025091Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - Floc-Cal metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027285Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepC_8dEnvironmentalOpen in IMG/M
3300027295Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepA_8dEnvironmentalOpen in IMG/M
3300027679Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027707Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)EnvironmentalOpen in IMG/M
3300027708Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027736Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027741Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027782Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027798Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027892Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027977 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12mEnvironmentalOpen in IMG/M
3300031784Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112EnvironmentalOpen in IMG/M
3300031884Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18005EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300034061Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028EnvironmentalOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M
3300034071Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110EnvironmentalOpen in IMG/M
3300034093Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072EnvironmentalOpen in IMG/M
3300034102Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112EnvironmentalOpen in IMG/M
3300034116Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOREnvironmentalOpen in IMG/M
3300034200Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190EnvironmentalOpen in IMG/M
3300034283Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061EnvironmentalOpen in IMG/M
3300034284Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1011952423300000115MarineSFTVKSNSIIGFSTVESQQRTVRKPAEVIKAMSAAGKPAARKIYKDLTTTETVFNGRGTENLIILKSW*
TBL_comb47_HYPODRAFT_1013155413300000553FreshwaterQLKGIGAVGKPAARKFYKDIRATEVAFNGRGTENLVILRVW*
OpTDRAFT_102528723300000864Freshwater And MarineGAGKPAARKAFKDIKATETAWNARGTENLIILKSW*
RCM31_1016971633300001851Marine PlanktonIKALSAAGKPAARKIFKDLTTTETAWNARGTENLVILRSW*
M3t6BS1_118796523300002141MarineQQRTVRKPAEIIKAMSAAGKPAARKIYKDLTTTETVFNGRGTENLIILKAW*
B570J29032_10893680813300002408FreshwaterQAAGKPAARKIYKDLTTTETPFNGRGTENLVILKAW*
B570J29032_10903767613300002408FreshwaterKAVQAAGKPAARKIYKDLTTTETPFNGRGTENLVILKAW*
B570J29032_10906705813300002408FreshwaterADVVKAVQAAGKPAARKIYKDLTTTETPFNGRGTENLVVLKAW*
B570J29032_10950638713300002408FreshwaterAEIIKAMQTAGKPAARKIYKELTTTETPWNARGTENLIVLKAW*
B570J40625_10033546313300002835FreshwaterVETQQKTVRKPAETIKAITAAGKPAARKIFKELTTTETPWNGRGTENLVVLKAW*
B570J40625_10040665813300002835FreshwaterDVVKAVQAAGKPAARKIYKDLTTTETPFNGRGTENLVILKAW*
JGI25908J49247_1012638623300003277Freshwater LakeQKTVRKPADIVRAMQAAGKPAARKIYKDLTTTETQFNGRGTENLVILKAW*
JGI25910J50241_1001720443300003388Freshwater LakeKTVRKPADVVKAVQAAGKPAARKIYKDLTTTETPFNGRGTENLVILKAW*
JGI25910J50241_1004039033300003388Freshwater LakeKPADVLKALSAAGKPAAXKIYKDLTTTETPFNGRGTENLVILKSW*
JGI25909J50240_100747313300003393Freshwater LakeKPADVLKALSAAGKPAARKIYKDLTTTETPFNGRGTENLVILKSW*
JGI25911J50253_1001008713300003411Freshwater LakeQKTVRKPADVVKAVQAAGKPAARKIYKDLTTTETPFNGRGTENLVILKAW*
Ga0066181_1020370723300004123Freshwater LakeLQKTVRKPADVLKALGAAGKPAARKIYKDLTTTETAFNGRGTENLIILKSW*
Ga0007760_1103335723300004793Freshwater LakeRKPADVLKLMSAAGKPAARRIYKDLTTTETAFNGRGTENLIILKSW*
Ga0070374_1012704413300005517Freshwater LakeALSAAGKPAARKIYKDLTTTETPFNGRGTENLIILKSW*
Ga0068877_1035034913300005525Freshwater LakeVESQQKTVRKPADVLKAMGAAGKPAARKIYKDLTTTETPFNRRGTENLIILKSW*
Ga0049080_1018562013300005582Freshwater LenticAEVVKAMQAAGKPAARKIYKDLTTTETGFNGRGTENLMVLKAW*
Ga0075464_1104823723300006805AqueousVRKPADVVKAIQAAGKPAARKIYKDLTTTETPWNARGTENLIVLKAW*
Ga0105051_1032230233300007722FreshwaterLTAGKPAARKIYKDLTTTETQFNGRGTENLVILKAW*
Ga0114340_100379513300008107Freshwater, PlanktonVGAGKPAARKAFKDINTTETAWNARGTENLIILKSW*
Ga0114343_119271823300008110Freshwater, PlanktonAGRPAARKAFKDIKATETAWNARGTENLIILKSW*
Ga0114346_114365313300008113Freshwater, PlanktonKGILGAGKPAARKAFKDIKATETAWNARGTENLIILKSW*
Ga0114876_124194923300008448Freshwater LakeGIVGAGKPAARKAFKDIKATETAWNARGTENLIILKSW*
Ga0115552_139680013300009077Pelagic MarineTVKSNSIIGFSTVESQQRTVRKPAEVIKAMSAAGKPAARKIYKDLTTTETVFNGRGTDNLIILKSW*
Ga0114980_1034248913300009152Freshwater LakeDILKAMGAAGKPAARKIYKDLTTTETPFNGRGTENLIILKSW*
Ga0114963_1012214333300009154Freshwater LakeFTIKNNSVIGYSTVETLQKTVRRPADVVKAIQAAGKPAARKIYKDLTTTETPWNARGTENLIVLKAW*
Ga0114977_1043588913300009158Freshwater LakeITKAIQAAGKPAARKIYKELTTTETPWNTRGTENLIILKAW*
Ga0114978_1018302313300009159Freshwater LakeADVVKAVQAAGKPAARKIYKDLTTTETPWNARGTENLIILKSW*
Ga0114978_1047776713300009159Freshwater LakeKTVRKPAETLKAMGAAGKPAARKIYKDLTTTETPFNGRGTENLIILKSW*
Ga0114978_1052411113300009159Freshwater LakeAVGKPAARKAFEAIKGTEVKWNGRGNENLVILKAW*
Ga0114970_1006736113300009163Freshwater LakeDVVKAIQAAGKPAARKIYKDLTTTETPWNARGTENLIILKAW*
Ga0114975_1050639413300009164Freshwater LakeKTVRKPADITKAIQAAGKPAARKIYKELTTTETPWNTRGTENLIILKAW*
Ga0115556_115233913300009437Pelagic MarineSTVESQQRTVRKPAEVIKAMSAAGKPAARKIYKDLTTTETVFNGRGTENLIILKSW*
Ga0115557_119927723300009443Pelagic MarineTVKSNSIIGFSTVESQQRTVRKPAEVIKAMSAAGKPAARKIYKDLTTTETVFNGRGTENLIILKSW*
Ga0114964_1026140423300010157Freshwater LakeGAVGKPAARKFYKDIRATEVAFNGRGTENLVILRVW*
Ga0114964_1062518513300010157Freshwater LakeRKPTDIVRAMQAAGKPAARKIYKDLTTTETQFNGRGTENLVILKAW*
Ga0114967_1017693523300010160Freshwater LakeVVKAIQAAGKPAARKLFKEIKATETAWNGRGTENLIILKSW*
Ga0116250_1054921313300010340Anaerobic Digestor SludgeAGKPAARKIYKDLTTTETPFNGRGTENLIILKSW*
Ga0116237_1128601923300010356Anaerobic Digestor SludgeKTVRKPAETIKAMQAAGKPAARKLFKDIRTTETAFNGRGTENLVILKSW*
Ga0133913_1029897713300010885Freshwater LakeLQKTVRKPADVVKSIQAAGKPAARKIYKDLTTTETPWNARGTENLIILKAW*
Ga0133913_1124313033300010885Freshwater LakeQKTVRKPADVVKAVQAAGKPAARKIYKDLTTTETPFNGRGTENLMVLKAW*
Ga0164292_1048661723300013005FreshwaterLAAGLPAACMQKTVRKPAEVVKAMQAAGKPAARKIYKDLTTTETGFNGRGTENLMVLKTW
Ga0164295_1041489323300013014FreshwaterETLQKTVRKPADVIKAIQAAGKPAARKIYRDLTTTETPWNARGTENLLVLKAW*
Ga0164295_1078258913300013014FreshwaterQLKAVIGVGKPAARKAFAAINATETKWNGRGNDNLIILWAW*
(restricted) Ga0172365_1056395313300013127SedimentADTLQKTVRKPADTVKAIAAAGKPAARKIFADLSTTETQFNCRGTEHLVVLKAW*
Ga0177922_1071920813300013372FreshwaterYSTVETLQKTVRKPADVIRAIQAAGKPAARKIYKDLTTTETPWNARGTENLIILKAW*
Ga0177922_1075044213300013372FreshwaterIQAAGKPAARKLFKEIKATETAWNGRGTENLIILKSW*
Ga0181347_118033313300017722Freshwater LakeRKPADVVKAIQAAGKPAARKLFKEIKATETAWNGRGTENLIILKSW
Ga0181362_103130013300017723Freshwater LakeSTVETLQKTVRKPADVIRAIQAAGKPAARKIYKDLTTTETSWNARGTENLLVLKAW
Ga0181349_109637113300017778Freshwater LakeAEILKAMGAAGKPAARKIYKDLTTTETPFNGRGTENLIILKSW
Ga0181346_100772713300017780Freshwater LakeKGIIGAGKPAARKAFKDINTTETAWNARGTENLIILKSW
Ga0181348_105744713300017784Freshwater LakeDVVKAVQAAGKPAARKIYKDLTTTETPFNGRGTENLMVLKAW
Ga0181348_107638813300017784Freshwater LakeTLRKPGDVVKAIQAAGKPAARKLFKEIKATETAWNGRGTENLIILKSS
Ga0181355_109540713300017785Freshwater LakeQKTVRKPADVVRAVQAAGKPAARKIYKDLTTTETAFNGRGTENLMVLKAW
Ga0188851_103727313300018682Freshwater LakeVIKAMSAAGKPAARKIYKDLTTTETVFNGRGTENLIILKSW
Ga0181359_102386413300019784Freshwater LakeEAMQAAGKPAARKIYKDLTTTETGFNGRGTENLVILKSW
Ga0181359_102843343300019784Freshwater LakeVLKLMSAAGKPAARRIYKDLTTTETAFNGRGTENLIILKSW
Ga0207193_107685143300020048Freshwater Lake SedimentXALQAAGKPAARKLFKDIKTTETAFNGRGTENLVILKSW
Ga0211733_1037692513300020160FreshwaterPADVLRALGAAGKPAARKIYKDLTTTETAFNGRGTENLMILKSW
Ga0211726_1051637013300020161FreshwaterKAIQAAGKPAARKIYKDLTTTETPWNARGTENLIILKAW
Ga0211726_1098504213300020161FreshwaterAMGAAGKPAARKIYKDLTTTETPFNGRGTENLIILKSW
Ga0211735_1035963323300020162FreshwaterLRALGAAGKPAARKIYKDLTTTETAFNGRGTENLIILKSW
Ga0211735_1078392023300020162FreshwaterIVGAGKPAARKAFKDIKATETAWNARGTENLIILKSW
Ga0211729_1071231813300020172FreshwaterQDVIKAVQAAGKPAARKIFKELTTTETAWNARGTENLIILKSW
Ga0211729_1097462933300020172FreshwaterQAAGKPAARKLFKEIKATETAWNGRGTENLIILKSW
Ga0211731_1080250023300020205FreshwaterGAAGKPAARKIYKDLTTTETAFNGRGTENLIILKSW
Ga0194048_1028208523300021519Anoxic Zone FreshwaterVQAAGKPAARKIYKDLTTTETPFNGRGTENLMILKAW
Ga0213922_111014623300021956FreshwaterAAGKPAARKIYKDLTTTETPWNARGTENLIILKAW
Ga0222713_1072356123300021962Estuarine WaterAEILKAMSAAGKPAARKIYKDLTTTETPFNGRGTENLIILKSW
Ga0212022_105488713300022164AqueousGQQRTVRKPAEVIKAMSAAGKPAARKIYKDLTTTETVFNGRGTENLIILKSW
Ga0181354_114785213300022190Freshwater LakeSTVETLQKTVRKPADVVKAIQAAGKPAARKIYKELTTTETPWNARGTENLIVLKAW
Ga0181354_119438723300022190Freshwater LakeVRKPADVIRAIQAAGKPAARKIYRDLTTTETPWNARGTENLIVLKAW
Ga0181351_102516513300022407Freshwater LakeTMQAAGKPAARKIYKDLTTTETQFNGRGTENLVILKAW
Ga0212088_1083329013300022555Freshwater Lake HypolimnionIGAVGKPAARKFYKDIRATEVAFNGRGTENLIILRVW
Ga0214919_1052875523300023184FreshwaterADVVRAVQAAGKPAARKLFKDIKATETVWNGRGTENLIILKSW
Ga0209616_102862523300025091FreshwaterTLQKTVRKPADVVKAIQAAGKPAARKIYKELTTTETPWNARGTENLIILKAW
Ga0255131_103764813300027285FreshwaterRKPAEVLKALGAAGKPAARKIYKDLTTTETPFNGRGTENLIILKSW
Ga0255126_109365413300027295FreshwaterLKAMGAAGKPAARKIYKDLTTTETPFNGRGTENLIILKSW
Ga0209769_101910543300027679Freshwater LakePADVVKAVQAAGKPAARKIYKDLSTTETPFNGRGTENLVILKAW
Ga0209443_118214023300027707Freshwater LakeQAAGKPAARKIYKDLTTTETPFNGRGTENLVILKAW
Ga0209443_129014823300027707Freshwater LakePADVTKAIQAAGKPAARKIYKDLTTTETPWNARGTENLIILKAW
Ga0209188_106412133300027708Freshwater LakeSIIGFSTVDSLQRTVRKPADIVKSVQTAGKPAARKIYKDLTTTETAFNGRGTENLVILKS
Ga0209188_114899913300027708Freshwater LakeVVRAIQAAGKPAARKIYKDLTTTETPWNARGTENLIILKAW
Ga0209190_104027513300027736Freshwater LakeQKTVRKPADVVRAIQAAGKPAARKIYKDLTTTETPWNARGTENLIILKAW
Ga0209085_105971813300027741Freshwater LakeETLQKTVRRPADVVKAIQAAGKPAARKIYKDLTTTETPWNARGTENLIVLKAW
Ga0209500_1044081023300027782Freshwater LakeKTVRKPAETLKAMGAAGKPAARKIYKDLTTTETPFNGRGTENLIILKSW
Ga0209353_1000690373300027798Freshwater LakeMQAAGKPAARKIYKDLTTTETQFNGRGTENLVVLKAW
Ga0209550_1027564513300027892Freshwater LakeAMQAAGKPAARKIYKDLTTTETGFNGRGTENLVILKSW
(restricted) Ga0247834_103550513300027977FreshwaterADVVKAVQAAGKPAARKIYKDLSTTETPFNGRGTENLVVLKAW
Ga0315899_1138716923300031784FreshwaterSTVESQQKTVRKPAEVLKALGAAGKPAARKIYKDLTTTETPFNGRGTENLIILKSW
Ga0316220_110865723300031884FreshwaterAEQLKGIGAVGKPAARKFYKDIRATEVAFNGRGTENLVILRVW
Ga0315901_1030843633300031963FreshwaterRKPAEVVKAMQAAGKPAARKIYKDLTTTETGFNGRGTENLMVLKAW
Ga0315903_1050398923300032116FreshwaterRAMQAAGKPAARKIYKELTTTETPWNARGTENLIILKAW
Ga0315903_1055549823300032116FreshwaterILKLMGAAGKPAARKIYKDLTTTETPFNGRGTENLIILKSW
Ga0334987_0042397_3720_38543300034061FreshwaterPADVVKAVQAAGKPAARKIYKDLTTTETPFNGRGTENLVVLKAW
Ga0335019_0729620_413_5653300034066FreshwaterQKTVRKPADVVKAVQAAGKPAARKIYKDLTTTETPFNGRGTENLVILKAW
Ga0335028_0714596_12_1673300034071FreshwaterMQKTVRKPADVVKAVQAAGKPAARKIYKDLTTTETPFNGRGTENLVVLKAW
Ga0335012_0264225_70_1833300034093FreshwaterMQAAGKPAARKIYKDLNTTETQFNGRGTENLVVLKAW
Ga0335029_0004463_2_1093300034102FreshwaterGAGKPAARKAFKDIKATETAWNARGTENLIILKSW
Ga0335068_0109784_51_1643300034116FreshwaterMSAAGKPAARKIYKDLTTAETVFNGRGTENLIILKAW
Ga0335065_0855045_37_1923300034200FreshwaterMQKTVRKPADIVRAMQAAGKPAARKIYKDLTTTETQFNGRGTENLVILKAW
Ga0335007_0087665_2_1273300034283FreshwaterVVKAVQAAGKPAARKIYKDLTTTETPFNGRGTENLVILKAW
Ga0335013_0353554_1_1143300034284FreshwaterVQAAGKPAARKIYKDLTTTETPFNGRGTENLVILKAW


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