Metagenome Family F091558

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091558
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	61 residues
Representative Sequence	VRYLTLLIAACLLAGCAGDVVMLNPRTGETMTCRASPLNPWSQQEACVGDHIAQGWKKLESQ
Number of Associated Samples	75
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	69.81 %
% of genes near scaffold ends (potentially truncated)	35.51 %
% of genes from short scaffolds (< 2000 bps)	79.44 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.374 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (19.626 % of family members)
Environment Ontology (ENVO)	Unclassified (42.056 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.879 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 27.78% β-sheet: 12.22% Coil/Unstructured: 60.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF02321	OEP	33.64
PF00072	Response_reg	13.08
PF00486	Trans_reg_C	6.54
PF00873	ACR_tran	6.54
PF00795	CN_hydrolase	2.80
PF08241	Methyltransf_11	0.93
PF04234	CopC	0.93
PF04392	ABC_sub_bind	0.93
PF13442	Cytochrome_CBB3	0.93
PF00296	Bac_luciferase	0.93
PF13489	Methyltransf_23	0.93
PF02954	HTH_8	0.93
PF03176	MMPL	0.93
PF01425	Amidase	0.93
PF00403	HMA	0.93
PF02518	HATPase_c	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	67.29
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.93
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.93
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.93
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.93
COG2372	Copper-binding protein CopC (methionine-rich)	Inorganic ion transport and metabolism [P]	0.93
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.93
COG2608	Copper chaperone CopZ	Inorganic ion transport and metabolism [P]	0.93
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.37 %
Unclassified	root	N/A	19.63 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.37 %
Unclassified	root	N/A	19.63 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.37 %
Unclassified	root	N/A	19.63 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	19.63 %
Unclassified	root	N/A	19.63 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	14.95 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	6.54 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.63 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	14.95 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	8.41 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	6.54 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.63 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	14.02 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	8.41 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	5.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.93 %
candidate division NC10	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.63 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	12.15 %
Phycisphaerales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales	5.61 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2.80 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.87 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.93 %
unclassified candidate division NC10	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.63 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	12.15 %
unclassified Phycisphaerales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales	5.61 %
Comamonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Comamonas	2.80 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.87 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.87 %
Aminobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Aminobacter	0.93 %
candidate division NC10 bacterium CSP1-5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.63 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	12.15 %
Phycisphaerales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	5.61 %
Comamonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Comamonas	2.80 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.87 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.87 %
unclassified Aminobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Aminobacter → unclassified Aminobacter	0.93 %
candidate division NC10 bacterium CSP1-5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.63 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	12.15 %
Phycisphaerales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	5.61 %
Comamonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Comamonas	2.80 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.87 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.87 %
Aminobacter sp. J15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Aminobacter → unclassified Aminobacter → Aminobacter sp. J15	0.93 %
candidate division NC10 bacterium CSP1-5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0684286	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101605752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	3211	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10086381	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300002908\|JGI25382J43887_10056905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2122	Open in IMG/M
3300004268\|Ga0066398_10085684	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300004281\|Ga0066397_10082144	Not Available	645	Open in IMG/M
3300004633\|Ga0066395_10008453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3714	Open in IMG/M
3300004633\|Ga0066395_10549009	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300004633\|Ga0066395_10701149	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300005180\|Ga0066685_10843216	Not Available	617	Open in IMG/M
3300005181\|Ga0066678_10059833	All Organisms → cellular organisms → Bacteria → Proteobacteria	2196	Open in IMG/M
3300005332\|Ga0066388_100010713	All Organisms → cellular organisms → Bacteria → Proteobacteria	7160	Open in IMG/M
3300005332\|Ga0066388_101206251	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
3300005332\|Ga0066388_106298525	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300005332\|Ga0066388_107563884	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	545	Open in IMG/M
3300005764\|Ga0066903_100032557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5942	Open in IMG/M
3300005764\|Ga0066903_105205875	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300006844\|Ga0075428_100383323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Comamonas	1507	Open in IMG/M
3300006852\|Ga0075433_10007895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Aminobacter → unclassified Aminobacter → Aminobacter sp. J15	8463	Open in IMG/M
3300006852\|Ga0075433_11231529	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300006854\|Ga0075425_100135757	Not Available	2813	Open in IMG/M
3300006854\|Ga0075425_101778885	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300006854\|Ga0075425_103105101	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	506	Open in IMG/M
3300006871\|Ga0075434_100961433	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300006871\|Ga0075434_101226861	All Organisms → cellular organisms → Bacteria → Proteobacteria	762	Open in IMG/M
3300006914\|Ga0075436_101469271	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	517	Open in IMG/M
3300006914\|Ga0075436_101549562	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	504	Open in IMG/M
3300007076\|Ga0075435_101110171	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300009147\|Ga0114129_11657592	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300009162\|Ga0075423_11006230	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	886	Open in IMG/M
3300010046\|Ga0126384_11749533	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300010046\|Ga0126384_11788147	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300010046\|Ga0126384_12088421	Not Available	543	Open in IMG/M
3300010358\|Ga0126370_10529960	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300010359\|Ga0126376_10299669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Comamonas	1397	Open in IMG/M
3300010360\|Ga0126372_10021926	All Organisms → cellular organisms → Bacteria	3792	Open in IMG/M
3300010360\|Ga0126372_10205305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1645	Open in IMG/M
3300010361\|Ga0126378_13043944	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	534	Open in IMG/M
3300010362\|Ga0126377_10077803	Not Available	2970	Open in IMG/M
3300010362\|Ga0126377_11474625	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300010366\|Ga0126379_10788626	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1049	Open in IMG/M
3300010366\|Ga0126379_11633641	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300010366\|Ga0126379_13589687	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	520	Open in IMG/M
3300010376\|Ga0126381_100179040	Not Available	2814	Open in IMG/M
3300010376\|Ga0126381_100468220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Comamonas	1771	Open in IMG/M
3300010376\|Ga0126381_104911098	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	513	Open in IMG/M
3300010398\|Ga0126383_10374457	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1453	Open in IMG/M
3300010398\|Ga0126383_10488872	Not Available	1287	Open in IMG/M
3300012096\|Ga0137389_10527021	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300012948\|Ga0126375_10424761	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300016294\|Ga0182041_10374744	Not Available	1203	Open in IMG/M
3300016294\|Ga0182041_12186480	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	517	Open in IMG/M
3300016319\|Ga0182033_10828645	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	816	Open in IMG/M
3300016341\|Ga0182035_11223276	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300016341\|Ga0182035_11919917	Not Available	537	Open in IMG/M
3300016404\|Ga0182037_11323930	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300016422\|Ga0182039_11717961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	574	Open in IMG/M
3300016445\|Ga0182038_10945110	Not Available	761	Open in IMG/M
3300016445\|Ga0182038_12189324	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300017959\|Ga0187779_10190469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1280	Open in IMG/M
3300017966\|Ga0187776_10055700	All Organisms → cellular organisms → Bacteria	2258	Open in IMG/M
3300017972\|Ga0187781_10938508	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	631	Open in IMG/M
3300018029\|Ga0187787_10022650	Not Available	1697	Open in IMG/M
3300018032\|Ga0187788_10018605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2199	Open in IMG/M
3300018058\|Ga0187766_10008347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5965	Open in IMG/M
3300018058\|Ga0187766_10363227	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300018085\|Ga0187772_10908193	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	640	Open in IMG/M
3300018086\|Ga0187769_10186110	All Organisms → cellular organisms → Bacteria	1533	Open in IMG/M
3300018088\|Ga0187771_11118517	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	668	Open in IMG/M
3300018433\|Ga0066667_11620068	Not Available	577	Open in IMG/M
3300021476\|Ga0187846_10432189	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300021560\|Ga0126371_10183450	All Organisms → cellular organisms → Bacteria → Proteobacteria	2179	Open in IMG/M
3300021560\|Ga0126371_10225704	Not Available	1979	Open in IMG/M
3300025915\|Ga0207693_10214327	All Organisms → cellular organisms → Bacteria → Proteobacteria	1513	Open in IMG/M
3300026334\|Ga0209377_1022519	Not Available	3167	Open in IMG/M
3300027874\|Ga0209465_10316311	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300027874\|Ga0209465_10326785	All Organisms → cellular organisms → Bacteria → Proteobacteria	768	Open in IMG/M
3300028536\|Ga0137415_10081427	All Organisms → cellular organisms → Bacteria	3095	Open in IMG/M
3300031544\|Ga0318534_10444942	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300031545\|Ga0318541_10360339	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300031545\|Ga0318541_10733685	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	551	Open in IMG/M
3300031546\|Ga0318538_10334748	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300031681\|Ga0318572_10883872	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	531	Open in IMG/M
3300031713\|Ga0318496_10525784	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300031719\|Ga0306917_10082614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2260	Open in IMG/M
3300031720\|Ga0307469_10148081	Not Available	1752	Open in IMG/M
3300031720\|Ga0307469_11243402	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300031736\|Ga0318501_10300156	Not Available	857	Open in IMG/M
3300031740\|Ga0307468_100121040	Not Available	1611	Open in IMG/M
3300031740\|Ga0307468_101727247	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300031765\|Ga0318554_10639347	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	598	Open in IMG/M
3300031768\|Ga0318509_10151553	All Organisms → cellular organisms → Bacteria	1279	Open in IMG/M
3300031771\|Ga0318546_10038732	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2897	Open in IMG/M
3300031792\|Ga0318529_10490372	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	571	Open in IMG/M
3300031799\|Ga0318565_10075359	Not Available	1597	Open in IMG/M
3300031820\|Ga0307473_10561643	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300031912\|Ga0306921_10296988	All Organisms → cellular organisms → Bacteria	1892	Open in IMG/M
3300031945\|Ga0310913_10193641	Not Available	1418	Open in IMG/M
3300031947\|Ga0310909_10382414	Not Available	1182	Open in IMG/M
3300032063\|Ga0318504_10156038	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1053	Open in IMG/M
3300032065\|Ga0318513_10479067	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	609	Open in IMG/M
3300032180\|Ga0307471_100018667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	4999	Open in IMG/M
3300032180\|Ga0307471_100020169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4856	Open in IMG/M
3300032180\|Ga0307471_100304974	All Organisms → cellular organisms → Bacteria → Proteobacteria	1681	Open in IMG/M
3300032180\|Ga0307471_103449555	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300032205\|Ga0307472_100232120	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1431	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.92%
Host-Associated	Host-Associated	13.08%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.92%
Plants	Host-Associated → Plants	13.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.08%
Cave	Environmental → Terrestrial → Cave	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.55%
Loam	Environmental → Terrestrial → Soil → Loam	13.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.08%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.35%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.51%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.15%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	19.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.08%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.28%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	9.35%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	9.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_06842862	2228664022	Soil	LRYLTAIIATCLLTGCARDVVMLNPRTGETMTCSQSPLNPWSQQEACIGGHIAQGWKTLKEER
INPhiseqgaiiFebDRAFT_1016057521	3300000364	Soil	LRYLTAIIATCLLTGCARDVVMLNPRTGETMTCSQSPLNPWSQQEACIGGHIAQGWKTLKEER*
AF_2010_repII_A1DRAFT_100863812	3300000597	Forest Soil	MRLPVRYLILVFAAYCLAGCARDVIMLNPRTGETKACLANPLNPWSQQDACIGEYIAQGWRRI*
JGI25382J43887_100569052	3300002908	Grasslands Soil	LQYLTLLIAICVVTGCARDVVMLNPRTGQTTTCRASAVNPWSQQEACVGDGIAHGWKKLE
Ga0066398_100856842	3300004268	Tropical Forest Soil	VRYVRLVVLAALLAGCARDVVMLNPRTDETTICPARPLNPWSQQQACIGD
Ga0066397_100821442	3300004281	Tropical Forest Soil	RPGRERADKAALAPGPSVGAKPVTGSLCNLTLLIAIGFMTGLSRMGETTTCRASAGNPWSQQEACVGDGIAHGWKQLE*
Ga0066395_100084531	3300004633	Tropical Forest Soil	VRFLLLTAVACLLGGCASDVMMLNPRTGEKATCPASPLNPWSQQDACIGDYIAQGWRRLEPP*
Ga0066395_105490091	3300004633	Tropical Forest Soil	VGAKPVTDSLCNLTLLIAIGFMTGCAPDVVMLNPRTGETTTCRASAGNPWSQQEACVGDGIAHGWKKLE*
Ga0066395_107011491	3300004633	Tropical Forest Soil	LRYLIVTIVVCVVMGCARDVVMLNPRTGETTTCRASALNPWSQEEACVSDHIAHGWRKLE
Ga0066685_108432162	3300005180	Soil	IAICVVTGCARDVVMLNPRTRETTTCRASAVNPWSQQEACIGDGIAHGWKKLE*
Ga0066678_100598333	3300005181	Soil	LQYLTLLIAICVVTGCAREVVMLNPRTGETTTCRASAVNPWSQQEACVGDGIAHGWKKLE
Ga0066388_1000107131	3300005332	Tropical Forest Soil	LRYLTAAIIATCLLTGCARDVMMVNPRTGETMTCRQSPLNPWSQQEACIGDHIAQGWKTLKEER*
Ga0066388_1012062512	3300005332	Tropical Forest Soil	LRYLTLIIAACLLAGCARDVVMLNPRTGEAMTCPQSPLNPWSQQEACIGDHIAQGWRRLDSK*
Ga0066388_1062985251	3300005332	Tropical Forest Soil	VGAKPVTDSLCNLTLLIAISFMTGCAPDVVMLNPRTGETTTCRASAGNPWSQQEACVGDGIAHGWKKLE*
Ga0066388_1075638842	3300005332	Tropical Forest Soil	MRYLILIIVAGLLTGCARDVVMLNPRTGETATCPASPLNLWSQQEACVGQYIAQGWKRLEAAR*
Ga0066903_1000325572	3300005764	Tropical Forest Soil	MVPFRYLMLLTAACVLMGCAHDTVMLNPRSGETATCRASSWNPWSQQEACVGDHIAQGWRRLE*
Ga0066903_1052058752	3300005764	Tropical Forest Soil	VEDTIVRYLALIVLACALTGCAADVVMLNPRTGDTATCRGSTLNPWSQQQACVGDYTAQGWRRLESRQWVDR*
Ga0075428_1003833232	3300006844	Populus Rhizosphere	LRYLTAIIATCLLTGCTRDVVMLNPRTGETMTCSQSPLNPWSQQEACIGGHIAQGWKTLKEER*
Ga0075433_100078953	3300006852	Populus Rhizosphere	LRYLTAIIATCLLTGCARDVVMLNPRTGETMTCSQSPLNPWSQQEACIGDHIAQGWKTLKEER*
Ga0075433_112315292	3300006852	Populus Rhizosphere	LQYLTLLIAICVVTGCARDVVMLNPRTGETTTCRASAVNPWSQQEACVGDGIAHGWKKLE
Ga0075425_1001357574	3300006854	Populus Rhizosphere	LQYLTLLIAICVVTGCARDVVMLNPRTGETTTCRANAVNPWSQQEACVGDGIAHGWKKLE
Ga0075425_1017788852	3300006854	Populus Rhizosphere	MLIAAACVLTGCARDVVMLNPRTGETTICRASTLNPWSQQEACVGNHMTQGWRRL
Ga0075425_1031051012	3300006854	Populus Rhizosphere	VRYMTLIFAACMLTGCAADVVMLNPRTGETVTCRAGSLNPWSQQQACVGEHVAQGWKRSESR*
Ga0075434_1009614332	3300006871	Populus Rhizosphere	LRYLTLIITTCLLMGCARDVVMLNPRTGEAMTCRPSPLNPWSQQEACVSDHIAQGWRRLDSK*
Ga0075434_1012268612	3300006871	Populus Rhizosphere	LQYLALLIAICVVTGCARDVVMLNPRTGETTTCRASAVNPWSQQEACIGDGIAHGWKKLE
Ga0075426_102105331	3300006903	Populus Rhizosphere	RTGRRWGKSVVAARYLILAIAVVVAAGCAGDVVLLNPRTGETTICRASALNPWSQHEACVGEYIAHGWRKLE*
Ga0075436_1014692712	3300006914	Populus Rhizosphere	LRYLTAIIATCLLTGCTRDVVMLNPRTGETMTCSQSPLNPWSQQEACIGDHIAQGWKTLKEER*
Ga0075436_1015495621	3300006914	Populus Rhizosphere	VIMAVGVVTGCARDVVMLNPRTGETTTCDASPLNPWSQQEACVGDYIANGWRRAE*
Ga0075435_1011101711	3300007076	Populus Rhizosphere	VRYLTLIIVTGLLAGCASDVVMLNPQTGEAATCPASPLNPWSQQETCIGQHIAQGWKRLEPK*
Ga0114129_116575922	3300009147	Populus Rhizosphere	LRYLTLIFAACALTGCAADVVMLNPRTGETMTCRASSLNPWSQQQACVGEHVAQGWKRLEYR*
Ga0075423_110062301	3300009162	Populus Rhizosphere	VMGCARDVAMLNPRTGETTTCRASALNPWSQEEACVGDHIARGWRKLE*
Ga0126384_117495332	3300010046	Tropical Forest Soil	IIAACLLAGCAQHVVMLNPRTGETTTCGTSPLNPWSQQEACVGEHITQGWRRLE*
Ga0126384_117881472	3300010046	Tropical Forest Soil	VRYLRLVILAALLAGCAHDVVMLNPRTDETTICPASPLNPWSQQEACIGDHIAQGWKRQL
Ga0126384_120884212	3300010046	Tropical Forest Soil	VGAKPVTGSLCNLTLLIAIGFMTGCARDVVMLNPRTGETTTCRASAGNPWSQQEACVGDGIAHGWKQLE*
Ga0126370_105299602	3300010358	Tropical Forest Soil	VRFLLLIAVASLLAGCASDVMMLNPRNGERATCPASPLNPWSQQDACVGEYIAQGWKRLEPQ*
Ga0126376_102996692	3300010359	Tropical Forest Soil	VRYTALIIVAGLLTGCASDAVMLNPRTGETFTCPASPLNPWSQQQACIGDHVAQGWRRQDSK*
Ga0126372_100219265	3300010360	Tropical Forest Soil	MLIVAACVCTGCARDAVMLNPRTGETTICRASTLNPWSQQEACVGDHITQGWRRLE*
Ga0126372_102053052	3300010360	Tropical Forest Soil	VGAKPFTDSLCNLTLLIAIGFMTGCAPDVVMLNPRTGETTTCRASAGNPWSQQEACVGDGIARGWRKLE*
Ga0126378_130439441	3300010361	Tropical Forest Soil	LTLLIAISFMTGCAPDVVMLNPRTGETTTCRASAGNPWSQQEACVGDGIAHGWKKLE*
Ga0126377_100778033	3300010362	Tropical Forest Soil	VRFLLLIAVAGLLASCAKDVMMLNPRTGESAACPASPLNPWSQQDACIGDYIAQGWRRLKPP*
Ga0126377_114746251	3300010362	Tropical Forest Soil	LRYLTLIIAACLLAGCARDVVMLNPRTGEAMTCPQSPLNPWSQQEACIGDHIAQG
Ga0126379_107886261	3300010366	Tropical Forest Soil	LIAISFMTGCAPDVVMLNPRTGETTTCRASAGNPWSQQEACVGDGIAHGWKKLE*
Ga0126379_116336411	3300010366	Tropical Forest Soil	LHEGALGKRKGGPVRFLLLIAVAGLLGGCASDVMMLNPRTGERATCPATPLNPWSQQDACVGEYIAQGWKRLEPQ*
Ga0126379_135896871	3300010366	Tropical Forest Soil	MRYLILIIMAGLLTGCARDVVMLNPRTGETATCPASPLNPWSQQEACVGQYIAQGWKRLEAAR*
Ga0126381_1001790402	3300010376	Tropical Forest Soil	VRFLLLIAVAGLLASCAKDVMMLNPRTGESAACPASPLNPWSQQDACIGDYIAQGWRRLEPP*
Ga0126381_1004682201	3300010376	Tropical Forest Soil	VRYVRLVVLAALLAGCARDVVMLNPRTDETTICPASPLNPWSQQQACIGDHMAQGWRRQP
Ga0126381_1049110982	3300010376	Tropical Forest Soil	SVGAKPVTDSLCNLTLLIAIGFMTGCAPDVVMLNPRTGETTTCRASAGNPWSQQEACVGDGIAHGWKKLE*
Ga0126383_103744572	3300010398	Tropical Forest Soil	VRYVRLVVLAALLAGCARDVVMLNPRTDETTICPARPLNPWSQQEACIGDHIAQGWKRQP
Ga0126383_104888722	3300010398	Tropical Forest Soil	VRYLRLVILTALLAGCAHDVVMLNPRTDETTICPASPLNPWSQQEACIGDHIAQGWKRQP
Ga0137389_105270212	3300012096	Vadose Zone Soil	LRYLIVILAAYGLTGCAGDVVMLNPRTGQTTTCRASSLNPWSQQEVCVGDHIAQGWKKRE
Ga0126375_104247612	3300012948	Tropical Forest Soil	VGILILILATSTLSGCASEVVMLNPRTGETATCRASPLNPWSQQETCVGQHIAQGWKRLEP*
Ga0182041_103747443	3300016294	Soil	GALRYVLVIIAVCVGTGCARDVVMLNPRTGETTTCRASTLDPWSQQEACVGDHIAHGWRKLE
Ga0182041_121864801	3300016294	Soil	LAALLAGCARDVVMLNPRTDETTICPARPLNPWSQQQACIGDHIAQGWKRQP
Ga0182033_108286453	3300016319	Soil	LVIAACLLAGCARDVVMLNPRTGDAVTCHARPLNPWSQQEACIGDLIGQGWKRLVNDEANFQPD
Ga0182035_112232762	3300016341	Soil	MRYLMLIAAACVVTRCARDAVMLNPRTGETTICRASALNPWSQQEACVGDYMTQGWRRLE
Ga0182035_119199172	3300016341	Soil	CVGTGCARDVVMLNPRTGETTTCRASALDPWSQQEACVGDHIAHGWRKLE
Ga0182037_113239302	3300016404	Soil	MRYLMLIATACVLTGCARDTVMLNPRTGETTTCRASALNPWSQQEACVGNYMTQGWRRLE
Ga0182039_117179611	3300016422	Soil	LGKRAIVVRYLLMAVAIGVVTGCARDVVMLNPRTSETTTCRASPLNPWSQQDACVGDYIAHGWRRVE
Ga0182038_109451101	3300016445	Soil	VCVGTGCARDVVMLNPRTGETTTCRASTLDPWSQQEACVGDHIAHGWRKLE
Ga0182038_121893242	3300016445	Soil	MRYLMLIATACVLTGCARDTVMLNPRTGETTICRASALNPWSQQEACVGDYMTQGWRRLE
Ga0187779_101904692	3300017959	Tropical Peatland	MRFAMLIAVATLLAGCASDVHVLNPRTGETAVCPASAMGLNPWSQQDACVAEYLAQGWTRSTHD
Ga0187776_100557002	3300017966	Tropical Peatland	MLVAAVYVLSGCSADAVMVNPRTGETTTCAASPLNPWSQQEACIGDHTAQGWKRQE
Ga0187781_109385081	3300017972	Tropical Peatland	VRYLTLLIAACLLAGCAGDVVMLNPRTGETMTCRASPLNPWSQQEACVGDHIAQGWKKLESQ
Ga0187787_100226501	3300018029	Tropical Peatland	MLVAAVYVLSGCSADAVMVNPRTGETTTCAASPLNPWSQQEDCIGDQNAQGWKRQE
Ga0187788_100186054	3300018032	Tropical Peatland	MSPVARRGKVVRYLIPLIVAGVLTGCASDVVVLNPRTGERATCPASPLNPWSQQESCIGQHMAQGWKRLEPQQR
Ga0187766_100083474	3300018058	Tropical Peatland	LRHLTLIIAVCLLTGCARDVVMVNPRTGETAVCRASPLNPWSQQESCIGDQIAQGWKRSEPR
Ga0187766_103632272	3300018058	Tropical Peatland	VRALALIFVAALLAGCAADVAMVNPRTGEKAICPASPLNPWSQQQACIGDHIAQGWKRAEPQ
Ga0187772_109081931	3300018085	Tropical Peatland	VRYLTLFIAACLLAGCAGDVVMLNPRTGETMTCRASPLNPWSQQEACVGDHIAQGWKKLESQ
Ga0187769_101861102	3300018086	Tropical Peatland	LRYLTLIIAACLLTGCAGDVVMLNPRTGETVTCRDSPLNPWSQQEACVGEHIAQGWKRLESK
Ga0187771_111185171	3300018088	Tropical Peatland	ACLLAGCAGDVVMLNPRTGETMTCRASPLNPWSQQEACVGDHIAQGWKKLESQ
Ga0066667_116200681	3300018433	Grasslands Soil	QCLTLIAICVVTGCARDVVMLNPRTGETTTCRASAVNPWSQQEACIGDGIAHGWKKLE
Ga0187846_104321891	3300021476	Biofilm	VSLAAACARDVVMLNPRTGETTTCRTSALNPWSQQEACVGDHIAHGWRKLE
Ga0126371_101834501	3300021560	Tropical Forest Soil	VRFLLLTAVACLLGGCASDVMMLNPRTGEKATCPASPLNPWSQQDACIGDYIAQGWKRLEPP
Ga0126371_102257041	3300021560	Tropical Forest Soil	VGILILILTTSTLSGCASDVVMLNPRTGETATCRASPLNPWSQQETCVGQHIAQGWKRLE
Ga0207693_102143271	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VRYLTLIITTCLLTGCARDVVMLNPRTGEAMTCRQSPLNPWSQQEACVSDHIAQGWRRLDSKQ
Ga0209377_10225191	3300026334	Soil	VVTGCAREVVMLNPRTGETTTCRASAVNPWSQQEACVGDGIAHGWKKLE
Ga0209465_103163111	3300027874	Tropical Forest Soil	VGAKPVTDSLCNLTLLIAIGFMTGCAPDVVMLNPRTGETTTCRASAGNPWSQQEACVGDGIAHGWKKLE
Ga0209465_103267852	3300027874	Tropical Forest Soil	MVPFRYLMLLTAACVLMGCAHDTVMLNPRSGETATCRASSWNPWSQQEACVGDHIAQGWRRLE
Ga0137415_100814272	3300028536	Vadose Zone Soil	LRFLILILAACGLTGCAGDVVMLNPRTGETTTCRASSLNPWSQQEVCVGDHIAQGWKKQE
Ga0318534_104449421	3300031544	Soil	VRYVRLVVLAALLAGCARDVVMLNPRTDETTICPARPLNPWSQQQACIGDHIAQ
Ga0318541_103603392	3300031545	Soil	MRYLMLIATACVLTGCARDTVMLNPRTGETTICRASALNPWSQQEACVGNYMTQGWRRLE
Ga0318541_107336851	3300031545	Soil	SRFQQPSSEGALRYVLVIIAVCVGTGCARDVVMLNPRTGETTTCRASALDPWSQQEACVGDHIAHGWRKLE
Ga0318538_103347483	3300031546	Soil	LMLIATACVLTGCARDTVMLNPRTGETTICRASALNPWSQQEACVGNYMTQGWRRLE
Ga0318572_108838722	3300031681	Soil	PLSPNSERQCQSRCQQPSSEGALRYVLVIIAVCVGTGCARDVVMLNPRTGETTTCRASTLDPWSQQEACVGDHIAHGWRKLE
Ga0318496_105257841	3300031713	Soil	IATACVLTGCARDTVMLNPRTGETTICRASALNPWSQQEACVGNYMTQGWRRLE
Ga0306917_100826142	3300031719	Soil	LRYVLVIIAVCVGTGCARDVVMLNPRTGETTTCRASTLDPWSQQEACVGDHIAHGWRKLE
Ga0307469_101480812	3300031720	Hardwood Forest Soil	VRYLTLIITTCLLMGCARDVVMLNPRTGEAMTCRPSPLNPWSQQEACVSDHIAQGWRRLDSK
Ga0307469_112434022	3300031720	Hardwood Forest Soil	MVRYLALIVLACALTGCAADVIMLNPRTGDTARCRGSALNPWSQQQACVGEYAAQGWRRLESRQWVER
Ga0318501_103001561	3300031736	Soil	MRYLMLIATACVLTGCARDTVMLNPRTGETTICRASALNPWSQQEACVGNYMTQGW
Ga0307468_1001210402	3300031740	Hardwood Forest Soil	VAACILMGCAHDVTMLNPRTGEMTTCRASALNPWSQQEACVGDHIAQGWRRFE
Ga0307468_1017272471	3300031740	Hardwood Forest Soil	LRYLTLIITTCLLTGCARDVVMLNPRTGEAMTCRPSPLNPWSQQEACVSDHI
Ga0318554_106393471	3300031765	Soil	ERQCQSRFQQPSSEGALRYVLVIIAVCVGTGCARDVVMLNPRTGETTTCRASALDPWSQQEACVGDHIAHGWRKLE
Ga0318509_101515531	3300031768	Soil	MRYLMLIAAACVLTGCARDAVMLNPRTGETTICPASALNPWSQQEACVGDYMTQGWRRLE
Ga0318546_100387322	3300031771	Soil	VRYVRLVVLAALLAGCARDVVMLNPRTDETTICPARPLNPWSQQQACIGDHIAQGWKRQP
Ga0318529_104903722	3300031792	Soil	QCQSRCQQPSSEGALRYVLVIIAVCVGTGCARDVVMLNPRTGETTTCRASALDPWSQQEACVGDHIAHGWRKLE
Ga0318565_100753591	3300031799	Soil	VIIAVCVGTGCARDVVMLNPRTGETTTCRASTLDPWSQQEACVGDHIAHGWRKLE
Ga0307473_105616431	3300031820	Hardwood Forest Soil	LSVRKEIALRYLIVILAAYGLTGCAGDVVMLNPRTGQTTTCRASPLNPWSQQEVCVGDHIAQGWKKRE
Ga0306921_102969884	3300031912	Soil	RYLMLIATACVLTGCARDTVMLNPRTGETTICRASALNPWSQQEACVGDYMTQGWRRLE
Ga0310913_101936411	3300031945	Soil	VRYVRLVVLAALLAGCARDVVMLNPRTDETTICPARPLNPWSQQQACIGDHIAQGW
Ga0310909_103824141	3300031947	Soil	PSSEGALRYVLVIIAVCVGTGCARDVVMLNPRTGETTTCRASTLDPWSQQEACVGDHIAHGWRKLE
Ga0318504_101560381	3300032063	Soil	VGVRYVRLVVLAALLAGCARDVVMLNPRTDETTICPARPLNPWSQQQACIGDHIAQGWKRQP
Ga0318513_104790672	3300032065	Soil	SPNSERQCQSRFQQPSSEGALRYVLVIIAVCVGTGCARDVVMLNPRTGETTTCRASALDPWSQQEACVGDHIAHGWRKLE
Ga0307471_1000186673	3300032180	Hardwood Forest Soil	LRYLTAIIATCLLTGCTRDVVMLNPRTGETMTCSQSPLNPWSQQEACIGGHIAQGWKTLKEER
Ga0307471_1000201692	3300032180	Hardwood Forest Soil	VGALQYLTLLIALCVVTGCARDVVMLNPRTGETTTCHASAVNPWSQQDACIGDGIAHGWKKLE
Ga0307471_1003049742	3300032180	Hardwood Forest Soil	LQYLTLLIAIYVVTGCARDVVMLNPRTGETATCRASALNPWSQQEACVGDGIAHGWKKLE
Ga0307471_1034495552	3300032180	Hardwood Forest Soil	VRPVTLIIVACVLAGCARDVVMLDPRTGDTAICRASPLNPWSQQAGCIGDRIAQGWKRL
Ga0307472_1002321203	3300032205	Hardwood Forest Soil	MVRYLALIVLACALTGCAADVIMLNPRTGDTATCRGSALNPWSQQQACVGEYAAQGWRRLESRQWVER

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F091558

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences