Metagenome / Metatranscriptome Family F091548

Overview

Basic Information

• Family ID: F091548
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 107
• Average Sequence Length: 56 residues
• Representative Sequence: VDFLRDVGQRGVWAVVRLSITFPWTTLVMAVVLAVLSIWYTSNHLEFQTSRN
• Number of Associated Samples: 93
• Number of Associated Scaffolds: 107

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 100.00 %
• % of genes near scaffold ends (potentially truncated): 100.00 %
• % of genes from short scaffolds (< 2000 bps): 99.07 %
• Associated GOLD sequencing projects: 93
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (96.262 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil (39.252 % of family members)
• Environment Ontology (ENVO): Unclassified (43.925 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (57.944 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 55.00%
  β-sheet: 0.00%
  Coil/Unstructured: 45.00%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00581	Rhodanese	92.52
PF02771	Acyl-CoA_dh_N	1.87

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.87

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.26 %
Unclassified	root	N/A	3.74 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.26 %
Unclassified	root	N/A	3.74 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.26 %
Unclassified	root	N/A	3.74 %

Level 4

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.93 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.93 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.74 %
Unclassified	root	N/A	3.74 %

Level 5

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	0.93 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.87 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.93 %
Unclassified	root	N/A	3.74 %

Level 6

Name	Rank	Taxonomy	Distribution
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Candidatus Poribacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.87 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.93 %
Unclassified	root	N/A	3.74 %

Level 7

Name	Rank	Taxonomy	Distribution
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Candidatus Poribacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria	0.93 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.93 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	1.87 %
Unclassified	root	N/A	3.74 %

Level 8

Name	Rank	Taxonomy	Distribution
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Candidatus Poribacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria	0.93 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.93 %
Syntrophobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae	1.87 %
Unclassified	root	N/A	3.74 %

Level 9

Name	Rank	Taxonomy	Distribution
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Candidatus Poribacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria	0.93 %
Desulfoferrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Desulfoferrobacter	1.87 %
Unclassified	root	N/A	3.74 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	0.93 %

Level 10

Name	Rank	Taxonomy	Distribution
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Candidatus Poribacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria	0.93 %
Desulfoferrobacter suflitae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Desulfoferrobacter → Desulfoferrobacter suflitae	1.87 %
Nitrospira sp. HN-bin3	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. HN-bin3	0.93 %
Unclassified	root	N/A	3.74 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300004268|Ga0066398_10231003	All Organisms → cellular organisms → Bacteria	500
3300004463|Ga0063356_104384980	All Organisms → cellular organisms → Bacteria	607
3300005174|Ga0066680_10577997	All Organisms → cellular organisms → Bacteria	705
3300005294|Ga0065705_10430693	All Organisms → cellular organisms → Bacteria	801
3300005332|Ga0066388_104207293	All Organisms → cellular organisms → Bacteria	734
3300005332|Ga0066388_108692141	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. HN-bin3	505
3300005347|Ga0070668_100296416	All Organisms → cellular organisms → Bacteria	1355
3300005447|Ga0066689_10686922	All Organisms → cellular organisms → Bacteria	641
3300005559|Ga0066700_10864548	All Organisms → cellular organisms → Bacteria	604
3300006034|Ga0066656_11040412	All Organisms → cellular organisms → Bacteria → Proteobacteria	526

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.92%
Host-Associated	Host-Associated	13.08%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	7.48%
Plants	Host-Associated → Plants	13.08%
Terrestrial	Environmental → Terrestrial	79.44%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	5.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.28%
Sediment	Environmental → Aquatic → Sediment	0.93%
Soil	Environmental → Terrestrial → Soil	79.44%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.93%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.87%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.87%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.93%
Loam	Environmental → Terrestrial → Soil → Loam	2.80%
Sand	Environmental → Terrestrial → Soil → Sand	1.87%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%

Subtype

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	66.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.48%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	39.25%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.74%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.87%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.48%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066398_102310031	3300004268	Tropical Forest Soil	MPRVDFLRDVGQRGVWAIVRLSITFPWTTLLMAVVLAILSIWYTSHHLKFETSRNAL
Ga0063356_1043849801	3300004463	Arabidopsis Thaliana Rhizosphere	MSRVDFLRDVGQRGVWALVRLSITFPWTTLVMAVVLAVLSIWYTSHHLDFQ
Ga0066680_105779971	3300005174	Soil	MAQRRRLLQGIGQRGVWAIVRLSITFPWTTLVMAVVLAGMAVWYTSTHLEFQTS
Ga0065705_104306931	3300005294	Switchgrass Rhizosphere	VDFLRDVGQRGVWAIVRLSITFPWTTLVMAVVLAVLSIWYTSN
Ga0066388_1042072931	3300005332	Tropical Forest Soil	VDFLRDVGQRGVWAVVRLSITFPWTTLVMAVVLAILSIWYTSNHLEFQTSRNAL
Ga0066388_1086921411	3300005332	Tropical Forest Soil	MAQRWHVLQDIGQRGVWALVRLSITFPWTTLLIAVLLAVGSLWYTSTHLEFQTSRNALVS
Ga0070668_1002964164	3300005347	Switchgrass Rhizosphere	MSRVDFLRDVGQRGVWAIVRLSITFPWTTLLMAVMLAVLSIWYTSH
Ga0066689_106869222	3300005447	Soil	MAHRRRLLQGIGQRGVWAIVRLSITFPWTTLVMAVVLAGMAVWYTSTHLEFQTSRNALVSQKARYIQRFEDIDKDFNELDSLI
Ga0066700_108645482	3300005559	Soil	VDFLRDVGQRGVWAVVRLSITFPWTTLVLAVGLAVLSIWYTSNHLEFQTSRNSL
Ga0066656_110404122	3300006034	Soil	MAQRRRFLQGIGQRGVWAIVRLSITFPWTTLVMAVVLAGMAVWYTSTHLEFQTSRNALVSQKARYIQRFEDIDKDF
Ga0075428_1016022803	3300006844	Populus Rhizosphere	MLRVDFLRDVGQRGVWALVRLSITFPWATLIIAVALAVASIWYTSGHLKFQTSRNALVSQSARY
Ga0075420_1014143092	3300006853	Populus Rhizosphere	MSRVDFLRDVGQRGVWALVRLAITFPWTTLVIAAVLAVLSIWYTSHHLEFQTSRNAL
Ga0075434_1016567551	3300006871	Populus Rhizosphere	VDFLRDVGQRGVWAVVRLSITFPWTTLFMAVVLAVLSIWYTSNYLEFQTSRNALVSQNAR
Ga0075435_1010795201	3300007076	Populus Rhizosphere	VDFLRDVGQRGVWAVVRLSITFPWTTLVMAVVLAILSIWYTSHHLEFQTSRNAL
Ga0099793_101638383	3300007258	Vadose Zone Soil	VDFLRDVGQRGVWAIVRLSITFPWTTLIMAVVLAVLSIWYTSKHLEFQTSRNALVSQNA
Ga0099828_115277171	3300009089	Vadose Zone Soil	MAQRRRFLQGIGQRGVWAIVRLSITFPWTTLVMAVVLAGMAVWYTSTHLEFQTSRNALVSQKARYIQ
Ga0111539_116144822	3300009094	Populus Rhizosphere	MSRVDFLRDVGQRGVWAVVRLSITFPWTTLFMAVVLAVLSIWYSSNHLEFQTSRNALVSQ
Ga0075418_112658253	3300009100	Populus Rhizosphere	VDFLRDVGQRGVWAVVRLSITFPWTTLVMAVVLAVLSIWYTSNHLE
Ga0105249_134870532	3300009553	Switchgrass Rhizosphere	MSRVDFLRDVGQRGVWAIVRLSITFPWTTLVMAVVLAVLSIWYTSNHLEFQTSRNALVSQ
Ga0105076_10471912	3300009816	Groundwater Sand	MQRVDFLRDVGQRGVWALVRLSITFPWTTLVMAIALAVTSVWYTSTHLEFQTSRN
Ga0105072_10712472	3300009818	Groundwater Sand	VDFLRDVAQRGVWAIVRLSITFPWTTLIMAVVLAVLSIW
Ga0126380_120971511	3300010043	Tropical Forest Soil	MTQRRHFLQDIGQRGVWAIVRLSITFPWTTLVIAVMLAVVSVWYTST
Ga0126382_122048622	3300010047	Tropical Forest Soil	MQRVDFLRDMGQRSVWALVRLSITFPWTTLVIAIALAAISVWYTSTHLEFQTS
Ga0126382_123763972	3300010047	Tropical Forest Soil	MSRVDFLRDMGQRGVWAVVRLSITFPWTTLVMAVGLAALSIWYTSSHLEFQTSRNALVSQ
Ga0127427_1228671	3300010066	Grasslands Soil	MAQRRRFLKGLGQRGVWAIVRLSITFPWTTLVMAVVLAGVAVWYTSTHLEFETSRNALVSQRTRYIQ
Ga0127429_1097011	3300010073	Grasslands Soil	VDFLRDVGQRGVWAVVRLSITFPWNTLVLAVGLAVLSIWY
Ga0127445_10663522	3300010085	Grasslands Soil	VDFLRDVGQRGVWALVRLSITFPWTILVMAVVLAILSIWYTSHHLEF
Ga0127496_10010251	3300010086	Grasslands Soil	MSRVDFLRDVGQRGVWALVRLSITFPWITLAMAVVLAIL
Ga0127496_10185712	3300010086	Grasslands Soil	MAQRRRLLQGIGQRGVWAIVRLSITFPWTTLVMAVVLAGMAVWYTSTHLEFQTSRNALVSQKARYIQRFEDIDKDFNEL
Ga0127492_10578741	3300010087	Grasslands Soil	MAQRRRLLQGIGQRGVWAIVRLSITFPWTTLVMAVVLAGMAVWYTSTHLEFQTSRNALVSQKARYIQRFE
Ga0127492_10579181	3300010087	Grasslands Soil	VDFLRDVGQRGVWAVVRLSITFPWTTLVMAVVLAVLSIWYTSNHLEFQTSRN
Ga0127468_10947722	3300010092	Grasslands Soil	LRVDFLRDVGQRGVWAVVRLSITFPWTTLVLAVGLAVLSIWY
Ga0127490_11183772	3300010093	Grasslands Soil	VDFLRDVGQRGVWALVRLSITFPWITLAMAVVLAILSIWYTSHHLEFQTS
Ga0127501_11023391	3300010097	Grasslands Soil	MAQRRRLLQGIGQRGVWAIVRLSITFPWTTLVMAVVLAGMALWYTATHLEFHTSR
Ga0127501_11110412	3300010097	Grasslands Soil	VDLLRDVGQRGVWALVRLSITFPWTTLVMAIALAATSVWYTSTHLEFQTSRNA
Ga0127470_10725371	3300010105	Grasslands Soil	MAQRRRFLKGLGQRGVWAIVRLSITFPWTTLVMAVVLAGVAVWYTSTHLEFETSRNALVSQRARYIQRFEDIDKDFNELDSFIVVVE
Ga0127474_10233421	3300010108	Grasslands Soil	VDFLRDVGQRGVWALVRLSITFPWITLAMAVVLAILSIWYT
Ga0127474_11301692	3300010108	Grasslands Soil	MQRVDFLRDVGQRSVWALVRLAITFPWTTLVMAIVLAATSVWYTSTHLEF
Ga0127497_10593122	3300010109	Grasslands Soil	MAQRRRLLQGIGQRGVWAIVRLSITFPWTTLVMAVVLAGMALWYTATHLEFHTSRNALVSQKA
Ga0127495_10131311	3300010115	Grasslands Soil	MLRVDFLRDVGQRGVWAIVRLSITFPWTTLVMAVVLAVLSIWYTSNHLEFQTS
Ga0127466_10109142	3300010116	Grasslands Soil	VDFLRDVGQRGVWAVVRLSITFPWTTLVLAVGLAVLSIWYTSNHLEFQTSRNSLVSQNARYIQRVEE
Ga0127479_11140961	3300010123	Grasslands Soil	VDFLRDVGQRGVWALVRLSITFPWTILVMAVVLAILSIWYTSHHLEFQ
Ga0127493_11405082	3300010130	Grasslands Soil	MLRVDFLRDVGQRGVWAIVRLSITFPWTTLVMAVVLAVLSIWYTSSHLEFQTSRNSLVS
Ga0127455_11419402	3300010132	Grasslands Soil	MQRVDFLRDVGQRSVWALVRLSITFPWTTLVVAIVLAATSVWYTSTHLE
Ga0127464_10564211	3300010139	Grasslands Soil	MAQRRRFLQGLGQRGVWAIVRLSITFPWTTLVIAVVLAGVAVWYTSTHLEFETSRNAL
Ga0127456_11251882	3300010140	Grasslands Soil	VGQRGVWAIVRLSITFPWTTLIMAVVLAVLSIWYTSKHLEFQTSRNALVSQNARYIQRFEEIDK
Ga0127499_12421912	3300010141	Grasslands Soil	VDFLRDVGQRGVWALVRLSITFPWTTLVMAIALAVTSAWYTSTHLEFQTSRNALVSQSAHYIQ
Ga0126321_14281101	3300010145	Soil	VDFLRDVGQRGVWAVVRLSITFPWTTLMMAVVLAVLSIWYTSNHLEFQT
Ga0126321_15200982	3300010145	Soil	MSRVDFLRDVGQRGVWAVVRLSITFPWTTLMMAVVLAVLSIWYTSNHLEFQT
Ga0126376_117971871	3300010359	Tropical Forest Soil	MAQRRRLLEGIGQRGVWAIVRLSITFPWTTLAIAVVLAGVAMWYTSTHLE
Ga0126372_120449072	3300010360	Tropical Forest Soil	VDFLRDVGQRGVWAVVRLSITFPWTTLAMSVVLAVLSVWYTST
Ga0126379_109098783	3300010366	Tropical Forest Soil	VDFLRDVGQRGVWAVVRLSITFPWTTLIMAVVLAILSIWYTSHHLEFETSRN
Ga0126383_105301093	3300010398	Tropical Forest Soil	MAQRRRFLQGIGQRGVWAIVRLSITFPWTTLVIAVVLAGVAVWYTSTHLEFQTSR
Ga0134127_123856812	3300010399	Terrestrial Soil	MWRVDFLRDVGQRGVWALVRLSITFPWTTLIIAVALAVVSIWYTSGHLQFQTSRNALVSQSARYIQRFEEIDK
Ga0137427_100574203	3300011445	Soil	MLRVDFLRDVGQRGVWALVRLSITFPWATLIIAVVLAVASIWYTSGHLKFQTSR
Ga0137363_118072982	3300012202	Vadose Zone Soil	MSRVDFLRDVGQRGVWAIVRLSITFPWTTLIMAVVLAVLSIWYTSKHLEFQTSRNALVSQNARY
Ga0150985_1124402262	3300012212	Avena Fatua Rhizosphere	VDFLRDVGQRGVWALVRLSITFPWITLAMAVVLAILSIWYTSHHLEFQTSR
Ga0134027_10835163	3300012364	Grasslands Soil	VDFLRDVGQRGVWAVVRLSITFPWTTLVMAVVLAGVAVWYTSTHLEFETSRN
Ga0134034_10803891	3300012375	Grasslands Soil	MAQRRRFLQGLGQRGVWAIVRLSITFPWTTLVMAVVLAGGAVWYTSTHLEFETSRNALVSQRARYIQRFEDI
Ga0134058_10655991	3300012379	Grasslands Soil	VDFLRDVGQRGVWALVRLSITFPWTVLVMAVVLAILSIWYTSHHLEFQTSRNALVSQNARYIQRFEE
Ga0134031_11490512	3300012388	Grasslands Soil	VDFLRDVGQRGVWAVVRLSITFPWTTLVLAVGLAVLSIWYTSNHLEFQTSRNSLVSQN
Ga0134040_10224142	3300012389	Grasslands Soil	VDFLRDVGQRGVWALVRLSITFPWTILVMAVVLAILSIWYTSHHLEFQTSRNA
Ga0134054_10288012	3300012390	Grasslands Soil	MAQRRRLLQGIGQRGVWAIVRLSITFPWTTLVMAVVLAGMALWYTATHLEFHTSRNA
Ga0134054_10761042	3300012390	Grasslands Soil	VDFLRDVGQRGVWALVRLSITFPWTILVMAVVLAILSIWYTSHHLEFQTSRNALVSQNARYIQRFE
Ga0134035_10748082	3300012391	Grasslands Soil	VDFLRDVGQRGVWALVRLSITFPWITLAMAVVLAILSIW
Ga0134057_11183232	3300012396	Grasslands Soil	MAQRRRLLQGIGQRGVWSIVRLSITFPWTTLVMAVVLAGMAVWYTSTHLEFQTSRNALISQKARYIQRFEDIDKDFNELD
Ga0134051_13217331	3300012398	Grasslands Soil	VDFLRDVGQRGVWAVVRLSITFPWTTLVLAVGLAVLSIWYTSNHLEFQ
Ga0134059_12860461	3300012402	Grasslands Soil	VDFLRDVGQRGVWAIVRLSITFPWTILVMAVVLAILSIWYTSHHLEFQTSRNA
Ga0134059_14186422	3300012402	Grasslands Soil	MAQRRRLLQGIGQRGVWAIVRLSITFPWTTLVMAVVLAGMAVWYTSTHLEF
Ga0134041_13513172	3300012405	Grasslands Soil	MAQRRRFLQGLGQRGVWAIVRLSITFPWTTLVMAVVLAGGAVWYTSTHLEFETSRNALVS
Ga0134053_10366161	3300012406	Grasslands Soil	MQRVDFLRDVGQRSVWALVRLSITFPWTTLVMAIVLAATSVWYTSTHLEFQTSRNALVSQ
Ga0134053_12005741	3300012406	Grasslands Soil	VGQRGVWAIVRLSITFPWTTLIIAVVLAVLSLWYTSKHLEFQTSRNA
Ga0134053_13278252	3300012406	Grasslands Soil	MAQRRRLLQGIGQRGVWAIVRLSITFPWTTLVMAVVLAGMAVWYTSTHLEFQTSRNALVSQKARYIQRFEDIDKDFNELDSFIVVVEPRRFERGKRFVD
Ga0134045_12398701	3300012409	Grasslands Soil	VDFLRDVGQRGVWAVVRLSITFPWTTLVLAVGLAVLSIWYTSNHLEFQTSRNSLVSQNARYIQRFEEID
Ga0134060_10131561	3300012410	Grasslands Soil	MLRVDFLRDVGQRGVWAIVRLSITFPWTTLVMAVVLAILS
Ga0134060_11209871	3300012410	Grasslands Soil	MAQRRRLLQGIGQRGVWAIVRLSITFPWTTLVMAVVLAGMALWYTATHLEFHTSRNALVSQKARYIQRFEDIDKDFNEL
Ga0150984_1206290621	3300012469	Avena Fatua Rhizosphere	VDFLRDVGQRGVWAIVRLSITFPWTTLVMAVILAVLSIWYTSNHLEFQTSRNALVSQNA
Ga0137359_115502282	3300012923	Vadose Zone Soil	VGQRGVWAIVRLSITFPWTTLIMAVVLAVLSIWYTSKHLEFQTSRNALVSQNARYIQRFEDI
Ga0137410_103701401	3300012944	Vadose Zone Soil	MSRVDFLRDVGQRGVWALVRLSITFPWTTLIIAVALAVGSIWYTSGHLEFQTSRNALVSQNAGYIQRFEEIDKD
Ga0126375_121069351	3300012948	Tropical Forest Soil	VGFLRDVGQRGVWAIVRLSITFPWTTLVLSVVLAVLSVWYTSTHL
Ga0137403_104087443	3300015264	Vadose Zone Soil	VGQRGVWAIVRLSITFPWTTLIMAVVLAVLSIWYTSKHLEFQTSRNALVSQNARYIQRFEDIDKDFYDL
Ga0132256_1005625982	3300015372	Arabidopsis Rhizosphere	VDFLRDVGQRGVWAIVRLSITFPWTTLLMAVVLAVLSIW
Ga0182041_111055682	3300016294	Soil	VDFLRDVGQRGVWAIVRLSITFPWTTLVLAVVLAILSIWYTSHHLEFESSRNALVSQNARYIQRF
Ga0066655_110438141	3300018431	Grasslands Soil	VDFLRDVGQRGVWAVVRLSITFPWTTLVLAVGLAVLSIWYTS
Ga0184646_12859611	3300019259	Groundwater Sediment	VDFLRDVGQRGVWAIVRLSITFPWTTLIMAVVLAVLSLWYTSKHLEFQTS
Ga0190264_123344732	3300019377	Soil	MAQQRRFLQDIGQRSVWALVRLSITFPWTTLIMAVVLAGMSIWYT
Ga0180113_11748142	3300020065	Groundwater Sediment	MSRVDFLRDVGQRGVWALVRLSITFPWTTLIMAVALAVVSIWYTSSHLKFQTSRNALVSQSARYIQRFEEI
Ga0179585_10193261	3300021307	Vadose Zone Soil	MSRVDFLRDVGQRGVWAIVRLSITFPWTTLIMAVVLAVLSIWYTSKHLEFQTSRNALVSQNARYIQRF
Ga0222625_10987372	3300022195	Groundwater Sediment	MQVDFLRDVGQRGVWALVRLSITFPWTTLVMAIVLAATSVWYTSTHLEFQTSRNALVSQS
Ga0222625_16417022	3300022195	Groundwater Sediment	VDFLRDVGQRGVWAIVRLSITCPWTTLFMAVVLAVLSIWYTSNHLEFQTS
Ga0212128_103053891	3300022563	Thermal Springs	MAQRRRFLQGIGQRGVWAIVRLSITFPWTTLIVAVVLAGMAVWYTSTHLEFQTSRNALVSQKAHYIQRFEDIDKDFNEFDSFIVVIEPQRFEHGKRFV
Ga0207711_105704493	3300025941	Switchgrass Rhizosphere	MSRVDFLRDVGQRGVWAIVRLSITFPWTTLVMAVVLAVLSIWYTSNHLEFQTS
Ga0207674_120447091	3300026116	Corn Rhizosphere	MSRVDFLRDVGQRGVWAIVRLSITFPWTTLVMAVVLAVLSIWYTSNHLEFQTSRNALVSQNA
Ga0209590_100553993	3300027882	Vadose Zone Soil	MSRVDFLRDVGQRGVWAIVRLSITFPWTTLIMAVVLAVLSIWYTSKHLEFQTSRNALVSQNARYIQRFEDIDKDFYDLD
Ga0247654_11816652	3300030552	Soil	MSRVDFLRDVGQRGVWALVRLSITFPWTTLVMAVILA
Ga0308203_10795532	3300030829	Soil	VDFLRDVGQRGVWALVRLSITFPWTTLVMAIALAATSV
Ga0308198_10438541	3300030904	Soil	MQRVDFLRDVGQRGVWALVRLSITFPWTTLVMAIALAATSVWYT
Ga0308200_11282391	3300030905	Soil	VDFLRDVGQRGVWAIVRLSITFPWTTLVMAVVLAVLS
Ga0308178_11645532	3300030990	Soil	VDFLRDVGQRGVWALVRLSITFPWTTLVMAIVLATT
Ga0308190_10828382	3300030993	Soil	VDFLRDVGQRGVWAIVRLSITFPWTTLIMAVVLAVLSIWYTSKHLEFQTSRNALVSQNARYIQRFEDIDK
Ga0308197_102800061	3300031093	Soil	VDFLRDVGQRGVWAIVRLSITFPWTTLIMAVVLAVLSIWYTSKHLEFQ
Ga0308199_10067614	3300031094	Soil	MQRVDFLRDVGQRGVWALVRLSITFPWTTLVMAIALAATSVWYTSTHLEFQTS
Ga0308199_11093201	3300031094	Soil	VDFLRDVGQRGVWAIVRLSITFPWTTLIMAVVLAVLSIWYTSKHLEFQTSRNALVSQN
Ga0308187_102883442	3300031114	Soil	MLRVDFLRDVGQRGVWALVRLSITFPWTTLGLAVALAVVSVWYTATHLEFQ
Ga0307497_105289122	3300031226	Soil	MSRVDFLRDVGQRGVWGIVRLSITFPWTTLVVGVILAVLSVW
Ga0307468_1020385822	3300031740	Hardwood Forest Soil	VDFLRDVGQRGVWAIVRLSITFPWTTLVMAVVLAVLSI
Ga0307471_1034251141	3300032180	Hardwood Forest Soil	MAQRRRFLQGIGQRGVWAIVRLAITFPWTTLVMAVVLAGMALWYTSTHL