Metagenome Family F091517

Basic Information
Family ID	F091517
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	44 residues
Representative Sequence	MDAKRKMPARDDGQARARRSRRIHAFLSAWAQRHWPERVTRFPKR
Number of Associated Samples	91
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.92 %
% of genes near scaffold ends (potentially truncated)	25.23 %
% of genes from short scaffolds (< 2000 bps)	79.44 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (97.196 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (15.888 % of family members)
Environment Ontology (ENVO)	Unclassified (27.103 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.402 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52. 1Ga0062589_1011573011 2Ga0063356_1005323372 3Ga0063356_1045289361 4Ga0062592_1016085882 5Ga0062594_1017782762 6Ga0066674_102206712 7Ga0066685_101640363 8Ga0066675_100746261 9Ga0065705_107811261 10Ga0070676_100699213 11Ga0068868_1003378743 12Ga0070694_1009460102 13Ga0066686_100042453 14Ga0066681_102737632 15Ga0070706_1000823313 16Ga0070706_1010255622 17Ga0070707_1017661102 18Ga0070698_1004545143 19Ga0070696_1000162777 20Ga0070693_1008978442 21Ga0066704_106416662 22Ga0066652_1015701231 23Ga0075417_100238933 24Ga0075417_100673542 25Ga0075417_101071852 26Ga0075433_101692043 27Ga0079217_100440443 28Ga0079215_104709051 29Ga0079216_104894702 30Ga0079218_105364251 31Ga0079218_129396782 32Ga0066710_1014204862 33Ga0105243_100162126 34Ga0105100_106775172 35Ga0134070_104671262 36Ga0134088_100283703 37Ga0134080_101770862 38Ga0134122_101059362 39Ga0134122_126024442 40Ga0137388_109004791 41Ga0137374_100868165 42Ga0137380_104890321 43Ga0137380_112742622 44Ga0137381_102492842 45Ga0137377_101051932 46Ga0137369_101516233 47Ga0137368_103940372 48Ga0137385_101756513 49Ga0137385_106182891 50Ga0137375_112935821 51Ga0137394_100563403 52Ga0137419_107171802 53Ga0137416_106559382 54Ga0137416_109202331 55Ga0134110_104744802 56Ga0134074_13938861 57Ga0184604_100043732 58Ga0184605_102790571 59Ga0184608_100003948 60Ga0184608_103669451 61Ga0184634_100683511 62Ga0184623_100401683 63Ga0184623_102260602 64Ga0184618_100913292 65Ga0184618_102842252 66Ga0184640_100481602 67Ga0184609_101067432 68Ga0184612_104388832 69Ga0190272_122371802 70Ga0066655_100929183 71Ga0066662_101561102 72Ga0193739_10032585 73Ga0210382_101587472 74Ga0222622_103669252 75Ga0207653_1000022717 76Ga0207653_100322182 77Ga0207645_102438672 78Ga0207684_106802451 79Ga0207684_110772422 80Ga0207660_104084452 81Ga0207662_100916442 82Ga0207652_103907441 83Ga0207646_114489672 84Ga0207690_117175181 85Ga0207712_106557711 86Ga0207640_109119172 87Ga0207648_100896711 88Ga0207675_1002333133 89Ga0209470_10728903 90Ga0209159_12897981 91Ga0209995_10652112 92Ga0209999_10696602 93Ga0209983_10519872 94Ga0209485_10056414 95Ga0209814_100251112 96Ga0209814_100473303 97Ga0209486_107367501 98Ga0268264_105679062 99Ga0137415_102414293 100Ga0137415_104181212 101Ga0307313_101034292 102Ga0307287_100835842 103Ga0307305_100336651 104Ga0307289_101909212 105Ga0307277_100020393 106Ga0326597_109984852 107Ga0364934_0066710_992_1129
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52. 1Ga0062589_1011573011 2Ga0063356_1005323372 3Ga0063356_1045289361 4Ga0066685_101640363 5Ga0066652_1015701231 6Ga0075417_100238933 7Ga0075417_101071852 8Ga0079218_129396782 9Ga0137388_109004791 10Ga0137374_100868165 11Ga0137419_107171802 12Ga0137416_109202331 13Ga0184618_100913292 14Ga0184618_102842252 15Ga0222622_103669252 16Ga0207660_104084452
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44. 1Ga0066674_102206712 2Ga0062589_1011573011 3Ga0063356_1005323372 4Ga0062592_1016085882 5Ga0062594_1017782762 6Ga0065705_107811261 7Ga0068868_1003378743 8Ga0070706_1000823313 9Ga0070698_1004545143 10Ga0070696_1000162777 11Ga0066704_106416662 12Ga0075417_100238933 13Ga0075433_101692043 14Ga0079216_104894702 15Ga0105100_106775172 16Ga0137369_101516233 17Ga0137385_101756513 18Ga0137375_112935821 19Ga0137419_107171802 20Ga0134074_13938861 21Ga0184605_102790571 22Ga0184634_100683511 23Ga0184623_100401683 24Ga0184623_102260602 25Ga0184618_100913292 26Ga0184618_102842252 27Ga0184612_104388832 28Ga0210382_101587472 29Ga0209995_10652112 30Ga0209814_100251112 31Ga0326597_109984852
Powered by MSAViewer

Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.10% β-sheet: 0.00% Coil/Unstructured: 58.90%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Structure Viewer
WebGL does not seem to be available. This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser. For a list of supported browsers, refer to http://caniuse.com/#feat=webgl. Load File(s)

Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
Powered by PDBe Molstar

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF13419	HAD_2	28.04
PF02548	Pantoate_transf	8.41
PF13480	Acetyltransf_6	7.48
PF01565	FAD_binding_4	4.67
PF04127	DFP	2.80
PF07690	MFS_1	1.87
PF01345	DUF11	0.93
PF03309	Pan_kinase	0.93
PF02558	ApbA	0.93
PF05977	MFS_3	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0413	Ketopantoate hydroxymethyltransferase	Coenzyme transport and metabolism [H]	8.41
COG0452	Phosphopantothenoylcysteine synthetase/decarboxylase CoaBC	Coenzyme transport and metabolism [H]	2.80
COG1521	Pantothenate kinase type III	Coenzyme transport and metabolism [H]	0.93
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.93
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.20 %
Unclassified	root	N/A	2.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.20 %
Unclassified	root	N/A	2.80 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.20 %
Unclassified	root	N/A	2.80 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	42.99 %
Unclassified	root	N/A	2.80 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	42.06 %
Unclassified	root	N/A	2.80 %
unclassified Terrabacteria group	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.93 %
Thermoflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia	0.93 %
Unclassified	root	N/A	2.80 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	40.19 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	40.19 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.93 %
Thermoflexales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales	0.93 %
Unclassified	root	N/A	2.80 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	40.19 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.93 %
Thermoflexaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae	0.93 %
Unclassified	root	N/A	2.80 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	40.19 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.93 %
Thermoflexus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae → Thermoflexus	0.93 %
Unclassified	root	N/A	2.80 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	40.19 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.93 %
Thermoflexus hugenholtzii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae → Thermoflexus → Thermoflexus hugenholtzii	0.93 %
Unclassified	root	N/A	2.80 %

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004156\|Ga0062589_101157301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	737	Open in IMG/M
3300004463\|Ga0063356_100532337	All Organisms → cellular organisms → Bacteria	1565	Open in IMG/M
3300004463\|Ga0063356_104528936	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300004480\|Ga0062592_101608588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	628	Open in IMG/M
3300005093\|Ga0062594_101778276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	648	Open in IMG/M
3300005166\|Ga0066674_10220671	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300005180\|Ga0066685_10164036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1516	Open in IMG/M
3300005187\|Ga0066675_10074626	All Organisms → cellular organisms → Bacteria	2169	Open in IMG/M
3300005294\|Ga0065705_10781126	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300005328\|Ga0070676_10069921	All Organisms → cellular organisms → Bacteria	2104	Open in IMG/M

Showing 1 to 10 of 107 entries

Previous1 2 3 4 5…11Next

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.37%
Host-Associated	Host-Associated	19.63%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	14.02%
Plants	Host-Associated → Plants	19.63%
Terrestrial	Environmental → Terrestrial	66.36%

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	0.93%
Freshwater	Environmental → Aquatic → Freshwater	1.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.28%
Sediment	Environmental → Aquatic → Sediment	12.15%
Soil	Environmental → Terrestrial → Soil	65.42%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.35%
Loam	Environmental → Terrestrial → Soil → Loam	14.02%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.87%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	12.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.48%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.02%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	12.15%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	6.54%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.67%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.21%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	11.21%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.61%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.89%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M

Showing 1 to 10 of 91 entries

Previous1 2 3 4 5…10Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062589_1011573011	3300004156	Soil	MDAQRKVSERDDGQARARRSRRIHAFLSAWAQRHWPERVTRFTKR*
Ga0063356_1005323372	3300004463	Arabidopsis Thaliana Rhizosphere	MNADRKTPKEDAQDRARRSRRIHAFLIAWAERHWPERVTRFPKR*
Ga0063356_1045289361	3300004463	Arabidopsis Thaliana Rhizosphere	MDAKSKTPTSDDTQSARRSRRIHAFLGAWAKRHWPERVTRFAKR*
Ga0062592_1016085882	3300004480	Soil	MNEHKTPKDDAQSRARRSRRIHAFLTAWAARHWPERVTRFPKR*
Ga0062594_1017782762	3300005093	Soil	MDAKSKTPTSDDTQSARRSRRIHAFLGAWAKRHWPERVTR
Ga0066674_102206712	3300005166	Soil	MDAKRKMPARDDGQARARRSRRIHAFLSAWAQRHWPERVTRFPKR*
Ga0066685_101640363	3300005180	Soil	MNAERKTPASDDAQARARRSRRIHAFLRRWAERHMPERVIR
Ga0066675_100746261	3300005187	Soil	MDAKRKMPARDDGQARVRRSRRIHAFLSAWAQRHWPERVTRFPKR*
Ga0065705_107811261	3300005294	Switchgrass Rhizosphere	MESQRKMPERDDRQARARRSRRIHAFLSAWAQRHWPERVTRFPKR*
Ga0070676_100699213	3300005328	Miscanthus Rhizosphere	MDAQRKVSERNDGQARARRSRRIHAFLSAWAQRHWPERVTRFTKR*
Ga0068868_1003378743	3300005338	Miscanthus Rhizosphere	MDSQRKMSVRDDGQARARRSRRIHAFLTAWAQRHWPERVTRFPK
Ga0070694_1009460102	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MDAQSKTPKSDDTQTRARRSRRIHAFLGAWAKRHWPERVTRFPKR*
Ga0066686_100042453	3300005446	Soil	MNAERKTPASDDAQARARRSRRIHAFLRRWAERHMPERVTRFPTR*
Ga0066681_102737632	3300005451	Soil	MDAKTKMPARDDGQARARRSRRIHAFLSAWAQRHWPERVTRFPKR*
Ga0070706_1000823313	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTADRKMPASDDAAARARRSRRIHAFLRRWAERHMPERVTRFPRR*
Ga0070706_1010255622	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTADRKMPASDDPAARARRSRRIRAFLRRWAERHMPERVT
Ga0070707_1017661102	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MDAQSKTPKSDDTQTRARRSRRIHAFLGAWAKRHWPERVT
Ga0070698_1004545143	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDAQRKTSARDDVQDRARRSHRIHAFLGAWAKRHWPERVTRFAKR*
Ga0070696_1000162777	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MDAKRKTAPSDDTRSRARRSRRIHAFLSAWAARHWPERVTRFTKR*
Ga0070693_1008978442	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MDAQRKVSERNDGQARARRSRRIHAFLSAWAQRHWPERVTRFPKR*
Ga0066704_106416662	3300005557	Soil	MNADRKTPTSDDAQARARRSRRIRAFLRRWADRHMPERVTRFPTR*
Ga0066652_1015701231	3300006046	Soil	MDAKTKMPARDDGQARARRSRRIHAFLSAWAQRHW
Ga0075417_100238933	3300006049	Populus Rhizosphere	MKDRKKPASETPESRARRSRRIHAFLDRWARRHMPERVTRFTSR*
Ga0075417_100673542	3300006049	Populus Rhizosphere	MDAKRKTLTSDDTRTRARRSRRIHTFLGAWAKRHWPERVTRFPKR*
Ga0075417_101071852	3300006049	Populus Rhizosphere	MAQPKMADAKIEEARARRSVRIHAFLSRWAQRHWPERVTRFPKR*
Ga0075433_101692043	3300006852	Populus Rhizosphere	MDAKRKTLTSDDTRTRARRSRRIHAFLGAWAKRHWPERVTRFPKR*
Ga0079217_100440443	3300006876	Agricultural Soil	PDAKIQEARARRSVRIHAFLSRWAQRHWPERVTRFPKR*
Ga0079215_104709051	3300006894	Agricultural Soil	MTAQRKMTDAKIEEARARRSVRIHAFLSRWAQRHWPERVTRFPKR*
Ga0079216_104894702	3300006918	Agricultural Soil	MTAPRKTPDAKIQEARARRSVRIHAFLSRWAQRHWPERVTRFPKR*
Ga0079218_105364251	3300007004	Agricultural Soil	MTAQRKTPDAKIQEARARRSVRIHAFLSRWAQRHWPERVTRFPKR*
Ga0079218_129396782	3300007004	Agricultural Soil	MTAERKTVESKIEAARARRSIRIHAFLTRWAERHWPERVTRFPKR*
Ga0066710_1014204862	3300009012	Grasslands Soil	MNADRKQPAGDDAQARARRSRRIHAFLRAWAERHMPERVTRFPAR
Ga0105243_100162126	3300009148	Miscanthus Rhizosphere	MNAQRKVSERDDGQARARRSRRIHAFLSAWAQRHWPERVTRFTKR*
Ga0105100_106775172	3300009166	Freshwater Sediment	MTAERKTVESKIEAARARRSIRIHAFLTRWADRHWPDRVTHFPKR*
Ga0134070_104671262	3300010301	Grasslands Soil	MNADRKQPARDDAQARARRSRRIHAFLRAWAERHMPERVTRFPAR*
Ga0134088_100283703	3300010304	Grasslands Soil	MNAERKTPASDEAQARARRSRRIHAFLRRWAERHMPERVTRFPTR*
Ga0134080_101770862	3300010333	Grasslands Soil	MNAERKSPASDDAQARARRSRRIHAFLRRWAERHMPERVTRFPTR*
Ga0134122_101059362	3300010400	Terrestrial Soil	MDAQHKMSERDDGQARARRSRRIQAFLSAWAQRHWPERVTRFRKR*
Ga0134122_126024442	3300010400	Terrestrial Soil	SDMDAKRKTAPSDDTHSRARRSRRIHAFLSAWAARHWPERVTRFTKR*
Ga0137388_109004791	3300012189	Vadose Zone Soil	MTADRKMPASDDAAARARRSRQIHAFLHRWAKRHMPERVTRFPRR*
Ga0137374_100868165	3300012204	Vadose Zone Soil	SDEKGGPQMNAQRKMPVSDEQARARRSRRIHAFLSAWARRHWPERVIRFAKR*
Ga0137380_104890321	3300012206	Vadose Zone Soil	MNADRKQPASDDAQARARRSRRIHAFLRAWAERHMPE
Ga0137380_112742622	3300012206	Vadose Zone Soil	MNAERKTPASDDAQARARRSRRIHAFLRRWAERHMPERVIRFPTR*
Ga0137381_102492842	3300012207	Vadose Zone Soil	MNADRKQPASDDAQARARRSRRIHAFLRAWAERHMPERVTRFPAR*
Ga0137377_101051932	3300012211	Vadose Zone Soil	MDAKRKMPARDDGHARARRSRRIHAFLSAWAQRHWPERVTRFPKR*
Ga0137369_101516233	3300012355	Vadose Zone Soil	MNAQRKMPVSDEQARARRSRRIHAFLSAWARRHWPERVIRFAKR*
Ga0137368_103940372	3300012358	Vadose Zone Soil	PQMNAQRKMPVSDEQARARRSRRIHAFLSAWARRHWPERVIRFAKR*
Ga0137385_101756513	3300012359	Vadose Zone Soil	MNAERKTPASDDAQARARRSRLIHAFLRRWAERHMPERVIRFPTR*
Ga0137385_106182891	3300012359	Vadose Zone Soil	MNADRKQPASDDAQARARRSRRIHAFLRAWAERHMPERVTHFPTR*
Ga0137375_112935821	3300012360	Vadose Zone Soil	MNADRKMRASDDAAARARRSRRIHAFLDGWAQRHWPDRVTHFGRR*
Ga0137394_100563403	3300012922	Vadose Zone Soil	MNADRKKPARENEAARARRSRRIQAFLHRWALRHMPERVTRFSR*
Ga0137419_107171802	3300012925	Vadose Zone Soil	YPMKADRKKPATDNAEALARRSRRIHVFLGRWARRHFPERVTRFTSR*
Ga0137416_106559382	3300012927	Vadose Zone Soil	MKADRKKPATDNAEALARRSRRIHVFLGRWARRHFPERVTRFTSR*
Ga0137416_109202331	3300012927	Vadose Zone Soil	EKGDLEMNAKRKMPARDDGPARARRSRRIHAFLSAWAQRHWPERVTRFPKR*
Ga0134110_104744802	3300012975	Grasslands Soil	MDAKRKMPARDDGQARARRSRRIHAFLSAWAQRHWPERVTRFPK
Ga0134074_13938861	3300017657	Grasslands Soil	MNADRKQPAGDDAQARARRSRRIHAFLRRWAERHMPERVTRFPTR
Ga0184604_100043732	3300018000	Groundwater Sediment	MDSQRKKSERDDGQARARRSRRIHTFLSAWAQRHWPERVTRFAKR
Ga0184605_102790571	3300018027	Groundwater Sediment	MDAQHKTPTSDDTQTRERRSRRIHAFLGAWAKRHWPERVTRFAKR
Ga0184608_100003948	3300018028	Groundwater Sediment	MDQRKTSVRDDGQARARRSRRIHIFLSAWAERHWPERVTRFPKR
Ga0184608_103669451	3300018028	Groundwater Sediment	MDSKRKMSERDDGQARARRSRRIHTFLSAWAQRHWPERVTRFPKR
Ga0184634_100683511	3300018031	Groundwater Sediment	MTAERKTPESKIEAARARRSIRIHAFLNRWARRHWPERVTRFPKR
Ga0184623_100401683	3300018056	Groundwater Sediment	MTAERKTPNTKVEESRARRSIRIHAFLSRWAERHWPERVTRFPKR
Ga0184623_102260602	3300018056	Groundwater Sediment	MTTQRKMTESTIEEARARRSIRIHAFLNRWAQRHWPERVTRFPKR
Ga0184618_100913292	3300018071	Groundwater Sediment	MNADRKKPAREIEDARARRSRRIQAFLHRWALRHMPERVTRFSR
Ga0184618_102842252	3300018071	Groundwater Sediment	MNADRKKLAKDDAEALARRSKRIHAFLGRWARRHMPARVTRFTR
Ga0184640_100481602	3300018074	Groundwater Sediment	MNADRKTPESKIEAARARRSIRIHAFLNRWARRHWPERVTRFPKR
Ga0184609_101067432	3300018076	Groundwater Sediment	MTERKTPDTKFEEARARRSIRIHAFLNRWAARHWPERVTRFPKR
Ga0184612_104388832	3300018078	Groundwater Sediment	MTTQRKTPDTKFEEARARRSIRIHAFLSRWAARHWPERVTRFPKR
Ga0190272_122371802	3300018429	Soil	MTDERKTPDAKFEEARARRSIRIHAFLNRWAARHWPERVTRFPKR
Ga0066655_100929183	3300018431	Grasslands Soil	MDAKRKMPARDDGQARARRSRRIHAFLSAWAQRHWPERVTRFPKR
Ga0066662_101561102	3300018468	Grasslands Soil	MDAKRKMPARDDEQSRARRSRRIHAFLSAWAQRHWPERVTRFPKR
Ga0193739_10032585	3300020003	Soil	MTAERKTPDSKIEEARARRSIRIHAFLNRWAQRHWPERVTRFPKR
Ga0210382_101587472	3300021080	Groundwater Sediment	MDAKRKTPTSDDTRTRLLRSRRIHAFLSAWAERHWPERVTRFPKR
Ga0222622_103669252	3300022756	Groundwater Sediment	MDAKRKTPTSDDTRTRLLRSRRIHAFLSAWAERHWP
Ga0207653_1000022717	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MDAKSKTPTSDDTQSARRSRRIHAFLGAWAKRHWPERVTRFAKR
Ga0207653_100322182	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MDAQRKVSERDGGQARARRSRRIHAFLSAWAQRHWPERVTRFTKR
Ga0207645_102438672	3300025907	Miscanthus Rhizosphere	MDAQRKVSERNDGQARARRSRRIHAFLSAWAQRHWPERVTRFTKR
Ga0207684_106802451	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTADRKMPASDDAAARARRSRRIHAFLRRWAERHMPERVTRFPRR
Ga0207684_110772422	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDAQSKTPKSDDTQTRARRSRRIHAFLGAWAKRHWPERVTRFPKR
Ga0207660_104084452	3300025917	Corn Rhizosphere	MDAKRKTAPSDDTHSRARRSRRIHAFLSAWAARHWPERVT
Ga0207662_100916442	3300025918	Switchgrass Rhizosphere	MDAQRKVSERDDGQARARRSRRIHAFLSAWAQRHWPERVTRFTKR
Ga0207652_103907441	3300025921	Corn Rhizosphere	SERNDGQARARRSRRIHAFLSAWAQRHWPERVTRFTKR
Ga0207646_114489672	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MDAQSKTPKSDDTQTRARRSRRIHAFLGAWAKRHWPERVTRF
Ga0207690_117175181	3300025932	Corn Rhizosphere	MDAQRKVSERDGGQARARRSRRIHAFLSAWAQRHWPERVTRF
Ga0207712_106557711	3300025961	Switchgrass Rhizosphere	RKEVADMDAKRKTAPSDDTHSRARRSRRIHAFLSAWAARHWPERVTRFTKR
Ga0207640_109119172	3300025981	Corn Rhizosphere	KVSERDDGQARARRSRRIHAFLSAWAQRHWPERVTRFTKR
Ga0207648_100896711	3300026089	Miscanthus Rhizosphere	MDAKRKTAPSDDTHSRARRSRRIHAFLSAWAARHWPERVTRFTKR
Ga0207675_1002333133	3300026118	Switchgrass Rhizosphere	MDAQRNVSERDGGQARARRSRRIHAFLSAWAQRHWPERVTRFPKR
Ga0209470_10728903	3300026324	Soil	MNAERKTPASDDAQARARRSRRIHAFLRRWAERHMPERVTRFPTR
Ga0209159_12897981	3300026343	Soil	AKRKMPARDDGQARARRSRRIHAFLSAWAQRHWPERVTRFPKR
Ga0209995_10652112	3300027471	Arabidopsis Thaliana Rhizosphere	MTAERKTIESKIEEARARRSIRIHAFLTRWAEHHWPERVTRFTKR
Ga0209999_10696602	3300027543	Arabidopsis Thaliana Rhizosphere	MTAERKTIESKIEEARARRSIRIHAFLTRWAERHWPERVTRFPKR
Ga0209983_10519872	3300027665	Arabidopsis Thaliana Rhizosphere	MTAERKTVESKLEAARARRSIRIHAFLTRWAERHWPERVTRFPKR
Ga0209485_10056414	3300027691	Agricultural Soil	MTAQRKMTDAKIEEARARRSVRIHAFLSRWAQRHWPERVTRFPKR
Ga0209814_100251112	3300027873	Populus Rhizosphere	MAQPKMADAKIEEARARRSVRIHAFLSRWAQRHWPERVTRFPKR
Ga0209814_100473303	3300027873	Populus Rhizosphere	MDAKRKTLTSDDTRTRARRSRRIHTFLGAWAKRHWPERVTRFPKR
Ga0209486_107367501	3300027886	Agricultural Soil	MTAQRKTPDAKIQEARARRSVRIHAFLSRWAQRHWPERVTRFPKR
Ga0268264_105679062	3300028381	Switchgrass Rhizosphere	MDAQRKVSERDGGQARARRSRRIHAFLSAWAQRHWPER
Ga0137415_102414293	3300028536	Vadose Zone Soil	EKGDLEMNAKRKMPARDDGPARARRSRRIHAFLSAWAQRHWPERVTRFPKR
Ga0137415_104181212	3300028536	Vadose Zone Soil	MKADRKKPATDNAEALARRSRRIHVFLGRWARRHFPERVTRFTSR
Ga0307313_101034292	3300028715	Soil	MNADRKKPARENEEARARRSRRIQAFLHRWALRHMPERVTRFSR
Ga0307287_100835842	3300028796	Soil	MTTERKTPEKIEAARARRSIRIHAFLNRWAARHWPERVTRFPKR
Ga0307305_100336651	3300028807	Soil	HKTPTSDDTQTRERRSRRIHAFLGAWAKRHWPERVTRFAKR
Ga0307289_101909212	3300028875	Soil	DAQHKTPTSDDTQTRERRSRRIHAFLGAWAKRHWPERVTRFAKR
Ga0307277_100020393	3300028881	Soil	MNADRKKPATENDAARARRSRRIQAFLHRWALRHMPERVTRFSR
Ga0326597_109984852	3300031965	Soil	MTAQRKTTNARIEEARARRSVRIHAFLSRWAQRHWPERVTRFPKR
Ga0364934_0066710_992_1129	3300034178	Sediment	MTTQRKMMESTIEEARARRSIRIHAFLNRWAQRHWPERVTRFPKR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F091517

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences