Metagenome Family F091503

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091503
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	71 residues
Representative Sequence	MNEKRMRAILPLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRASMYDLHDGDLLTLYTEVLLAQPTR
Number of Associated Samples	61
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.70 %
% of genes near scaffold ends (potentially truncated)	16.82 %
% of genes from short scaffolds (< 2000 bps)	62.62 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.897 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (70.093 % of family members)
Environment Ontology (ENVO)	Unclassified (75.701 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (71.963 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 6.19% β-sheet: 37.11% Coil/Unstructured: 56.70%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF12705	PDDEXK_1	32.71
PF13479	AAA_24	17.76
PF00476	DNA_pol_A	1.87
PF03167	UDG	1.87
PF00664	ABC_membrane	0.93
PF01541	GIY-YIG	0.93
PF00847	AP2	0.93
PF13392	HNH_3	0.93
PF03819	MazG	0.93
PF13538	UvrD_C_2	0.93
PF12236	Head-tail_con	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	1.87
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	1.87
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	1.87
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	1.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.57 %
Unclassified	root	N/A	22.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.90 %
Unclassified	root	N/A	22.43 %
Viruses	superkingdom	All Organisms → Viruses	4.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.90 %
Unclassified	root	N/A	22.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.67 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	30.84 %
Unclassified	root	N/A	22.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.48 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	6.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.67 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.93 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	30.84 %
Unclassified	root	N/A	22.43 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.67 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.87 %
bacterium ADurb.BinA186	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.BinA186	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.84 %
Unclassified	root	N/A	22.43 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	5.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.67 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.87 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	0.93 %
bacterium ADurb.BinA186	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.BinA186	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.84 %
Unclassified	root	N/A	22.43 %
Verrucomicrobia bacterium 12-59-8	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 12-59-8	5.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.67 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	0.93 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %
bacterium ADurb.BinA186	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.BinA186	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.84 %
Unclassified	root	N/A	22.43 %
Verrucomicrobia bacterium 12-59-8	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 12-59-8	5.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.67 %
Vineibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Vineibacter	0.93 %
Candidatus Parcubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
bacterium ADurb.BinA186	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.BinA186	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.84 %
Unclassified	root	N/A	22.43 %
Verrucomicrobia bacterium 12-59-8	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 12-59-8	5.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.67 %
Vineibacter terrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Vineibacter → Vineibacter terrae	0.93 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.93 %
unclassified Parcubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria	0.93 %
bacterium ADurb.BinA186	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.BinA186	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.84 %
Unclassified	root	N/A	22.43 %
Verrucomicrobia bacterium 12-59-8	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 12-59-8	5.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.67 %
Candidatus Parcubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	0.93 %
Bradyrhizobium sp. 153	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 153	0.93 %
Vineibacter terrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Vineibacter → Vineibacter terrae	0.93 %
bacterium ADurb.BinA186	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.BinA186	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003321\|soilH1_10142619	All Organisms → cellular organisms → Bacteria	10214	Open in IMG/M
3300005534\|Ga0070735_10000377	All Organisms → cellular organisms → Bacteria	51140	Open in IMG/M
3300006050\|Ga0075028_100281792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	921	Open in IMG/M
3300006854\|Ga0075425_102015014	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300009038\|Ga0099829_10093186	All Organisms → Viruses → Predicted Viral	2330	Open in IMG/M
3300009088\|Ga0099830_10150047	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1792	Open in IMG/M
3300009088\|Ga0099830_10950623	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300010343\|Ga0074044_10157407	Not Available	1518	Open in IMG/M
3300010942\|Ga0139176_109734	Not Available	998	Open in IMG/M
3300010943\|Ga0138502_107420	Not Available	1233	Open in IMG/M
3300011269\|Ga0137392_10001768	All Organisms → cellular organisms → Bacteria	12599	Open in IMG/M
3300011269\|Ga0137392_10351300	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1221	Open in IMG/M
3300011269\|Ga0137392_10524055	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 12-59-8	984	Open in IMG/M
3300011269\|Ga0137392_10582958	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300011270\|Ga0137391_10005443	All Organisms → cellular organisms → Bacteria	9820	Open in IMG/M
3300011270\|Ga0137391_10050143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3558	Open in IMG/M
3300011270\|Ga0137391_11242325	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 12-59-8	592	Open in IMG/M
3300011271\|Ga0137393_10067116	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2851	Open in IMG/M
3300012096\|Ga0137389_10013619	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5515	Open in IMG/M
3300012189\|Ga0137388_11923737	Not Available	521	Open in IMG/M
3300012203\|Ga0137399_10383299	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 12-59-8	1171	Open in IMG/M
3300012205\|Ga0137362_10194018	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1747	Open in IMG/M
3300012205\|Ga0137362_10305245	All Organisms → Viruses → Predicted Viral	1378	Open in IMG/M
3300012205\|Ga0137362_10342939	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 12-59-8	1293	Open in IMG/M
3300012205\|Ga0137362_10353825	All Organisms → Viruses → Predicted Viral	1272	Open in IMG/M
3300012205\|Ga0137362_10360389	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1259	Open in IMG/M
3300012205\|Ga0137362_10750867	Not Available	837	Open in IMG/M
3300012205\|Ga0137362_10971049	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724	Open in IMG/M
3300012205\|Ga0137362_11352392	Not Available	598	Open in IMG/M
3300012211\|Ga0137377_11739958	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300012349\|Ga0137387_10675867	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300012361\|Ga0137360_10021315	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4337	Open in IMG/M
3300012361\|Ga0137360_11749889	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300012362\|Ga0137361_10690444	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	933	Open in IMG/M
3300012362\|Ga0137361_11921992	Not Available	508	Open in IMG/M
3300012363\|Ga0137390_10012483	All Organisms → cellular organisms → Bacteria → Proteobacteria	7604	Open in IMG/M
3300012363\|Ga0137390_10930673	Not Available	823	Open in IMG/M
3300012582\|Ga0137358_10066043	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2424	Open in IMG/M
3300012582\|Ga0137358_10111921	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.BinA186	1852	Open in IMG/M
3300012582\|Ga0137358_10198733	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1368	Open in IMG/M
3300012582\|Ga0137358_10317697	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300012582\|Ga0137358_10326695	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1040	Open in IMG/M
3300012582\|Ga0137358_10568867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	761	Open in IMG/M
3300012582\|Ga0137358_10789233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	632	Open in IMG/M
3300012683\|Ga0137398_10035470	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2864	Open in IMG/M
3300012683\|Ga0137398_10062201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2250	Open in IMG/M
3300012683\|Ga0137398_10351203	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300012685\|Ga0137397_10788640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 153	705	Open in IMG/M
3300012922\|Ga0137394_10691131	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	859	Open in IMG/M
3300012923\|Ga0137359_10243999	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	1603	Open in IMG/M
3300012923\|Ga0137359_10335046	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1345	Open in IMG/M
3300012923\|Ga0137359_11001432	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	717	Open in IMG/M
3300012925\|Ga0137419_11219701	Not Available	630	Open in IMG/M
3300012929\|Ga0137404_10021675	All Organisms → cellular organisms → Bacteria	4644	Open in IMG/M
3300012929\|Ga0137404_10037081	All Organisms → cellular organisms → Bacteria	3652	Open in IMG/M
3300012929\|Ga0137404_10050777	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3177	Open in IMG/M
3300012929\|Ga0137404_10052387	All Organisms → Viruses → Predicted Viral	3134	Open in IMG/M
3300012929\|Ga0137404_10125673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2103	Open in IMG/M
3300012929\|Ga0137404_11413328	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300012929\|Ga0137404_11693301	Not Available	587	Open in IMG/M
3300012930\|Ga0137407_11901596	Not Available	567	Open in IMG/M
3300012944\|Ga0137410_10341110	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300012944\|Ga0137410_11147661	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	667	Open in IMG/M
3300012944\|Ga0137410_11562022	Not Available	577	Open in IMG/M
3300013296\|Ga0157374_10414566	Not Available	1345	Open in IMG/M
3300014164\|Ga0181532_10524160	Not Available	648	Open in IMG/M
3300014493\|Ga0182016_10109328	All Organisms → cellular organisms → Bacteria	1939	Open in IMG/M
3300014811\|Ga0119960_1004857	Not Available	1027	Open in IMG/M
3300015053\|Ga0137405_1011862	All Organisms → cellular organisms → Bacteria	4207	Open in IMG/M
3300015053\|Ga0137405_1017174	All Organisms → cellular organisms → Bacteria	9652	Open in IMG/M
3300015053\|Ga0137405_1091911	All Organisms → cellular organisms → Bacteria	2944	Open in IMG/M
3300015241\|Ga0137418_10839292	Not Available	683	Open in IMG/M
3300015264\|Ga0137403_10099232	All Organisms → cellular organisms → Bacteria	2921	Open in IMG/M
3300015264\|Ga0137403_10279205	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1571	Open in IMG/M
3300017754\|Ga0181344_1147932	Not Available	671	Open in IMG/M
3300018083\|Ga0184628_10057412	All Organisms → Viruses → Predicted Viral	1969	Open in IMG/M
3300019789\|Ga0137408_1126429	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1771	Open in IMG/M
3300019789\|Ga0137408_1180393	All Organisms → cellular organisms → Bacteria	7899	Open in IMG/M
3300019789\|Ga0137408_1185020	Not Available	636	Open in IMG/M
3300019789\|Ga0137408_1225023	All Organisms → cellular organisms → Bacteria → Proteobacteria	3378	Open in IMG/M
3300019789\|Ga0137408_1374676	Not Available	565	Open in IMG/M
3300019886\|Ga0193727_1000140	All Organisms → cellular organisms → Bacteria	24152	Open in IMG/M
3300019886\|Ga0193727_1006914	All Organisms → cellular organisms → Bacteria	4540	Open in IMG/M
3300019886\|Ga0193727_1115211	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	775	Open in IMG/M
3300019999\|Ga0193718_1000949	All Organisms → cellular organisms → Bacteria	6359	Open in IMG/M
3300020004\|Ga0193755_1004382	All Organisms → cellular organisms → Bacteria	4508	Open in IMG/M
3300021086\|Ga0179596_10328726	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300021088\|Ga0210404_10006932	All Organisms → cellular organisms → Bacteria	4579	Open in IMG/M
3300021088\|Ga0210404_10011572	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3634	Open in IMG/M
3300021180\|Ga0210396_10255240	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1558	Open in IMG/M
3300021404\|Ga0210389_10029266	All Organisms → cellular organisms → Bacteria	4234	Open in IMG/M
3300021420\|Ga0210394_10825741	Not Available	809	Open in IMG/M
3300024288\|Ga0179589_10531794	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 12-59-8	547	Open in IMG/M
3300026319\|Ga0209647_1055657	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2094	Open in IMG/M
3300026320\|Ga0209131_1000148	All Organisms → cellular organisms → Bacteria → Proteobacteria	50248	Open in IMG/M
3300027862\|Ga0209701_10059932	Not Available	2426	Open in IMG/M
3300027862\|Ga0209701_10158483	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 12-59-8	1377	Open in IMG/M
3300027903\|Ga0209488_10113346	Not Available	2038	Open in IMG/M
3300027986\|Ga0209168_10000697	All Organisms → cellular organisms → Bacteria	30209	Open in IMG/M
3300028536\|Ga0137415_11293505	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	547	Open in IMG/M
3300028552\|Ga0302149_1151973	Not Available	602	Open in IMG/M
3300028566\|Ga0302147_10120407	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	895	Open in IMG/M
3300029908\|Ga0311341_10251089	All Organisms → cellular organisms → Bacteria → Proteobacteria	1072	Open in IMG/M
3300029914\|Ga0311359_10138020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Vineibacter → Vineibacter terrae	2266	Open in IMG/M
3300031507\|Ga0307509_10001195	All Organisms → cellular organisms → Bacteria → Proteobacteria	44193	Open in IMG/M
3300031730\|Ga0307516_10004155	All Organisms → cellular organisms → Bacteria → Proteobacteria	18054	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.39%
Host-Associated	Host-Associated	3.74%
Engineered	Engineered	1.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.72%
Aquatic	Environmental → Aquatic	4.67%
Plants	Host-Associated → Plants	3.74%
Wastewater	Engineered → Wastewater	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.98%
Peat	Environmental → Terrestrial → Peat	3.74%
Freshwater	Environmental → Aquatic → Freshwater	2.80%
Sediment	Environmental → Aquatic → Sediment	1.87%
Roots	Host-Associated → Plants → Roots	1.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.87%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.11%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.87%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Unclassified	1.87%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	76.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.87%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	70.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.67%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.74%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.87%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	1.87%
Wastewater	Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater	1.87%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.93%
Aquatic	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Aquatic	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010942	Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain - replicate C3	Engineered	Open in IMG/M
3300010943	Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain - replicate Ab2	Engineered	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014811	Aquatic viral communities from ballast water - Michigan State University - AB_ballast water	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028552	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_1	Environmental	Open in IMG/M
3300028566	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2	Environmental	Open in IMG/M
3300029908	II_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300031507	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM	Host-Associated	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
soilH1_101426198	3300003321	Sugarcane Root And Bulk Soil	VAAVSELRAILPLLKARIIDRGPTHFTISFGPEYGAPTQIRIECGGEMYDLRDGDLLTLYTEVPLAKPQPTPKQ*
Ga0070735_1000037755	3300005534	Surface Soil	MAEAAKPMRAILPLLKARIVDRGPTHFTLSFGPEYGSPTTIRISTNTERYDLRDGDILTLYTEVFLAQPKPTSIE*
Ga0075028_1002817922	3300006050	Watersheds	MTGQKQLRAILPLLKAHVTDRGPEHFTISFGPEYGSPTQIRITCNTEMYDLHDGDLLTIYTEVLLSKPKGTS*
Ga0075425_1020150142	3300006854	Populus Rhizosphere	MPEKQMRAIFPLLKARVIERGPTFFVIGFGPEYGSPTRIQIDCNMSLYDIHDGDILTLYTEVYLAKPN*
Ga0099829_100931862	3300009038	Vadose Zone Soil	MTKQLRAILPLLKAHVVDRGPDHFTISFGPEYGSPTQIKIECNMDMYDLRDGDLLTIYTEVLLSQPKGTT*
Ga0099830_101500472	3300009088	Vadose Zone Soil	MMNEKQLRAILPLLKARVVDRGQSHFTISFGPEYGSPTQIRIECNMDMYDLRDGDLLTIYTEVLITQPKGTA*
Ga0099830_109506231	3300009088	Vadose Zone Soil	MTKQLRAILPLLKARVVDRGANHFTISFGPEYGSPTQIRIECNMDMYDLHDGDLLTIYTEVL
Ga0074044_101574073	3300010343	Bog Forest Soil	MTEPIKAQMRAIIPLLKGRITDRGPNHFTLFFGTEYGSPTTIKIIGPTDRYDLRDGDILTLYTEVLLATPHPAPSSN*
Ga0139176_1097343	3300010942	Wastewater	SVERYSMPNNQVGGCLPLVEARVLERGADYFVIGFGPEHGSPARIRIGCNMTMHDIRDGDILTLYTEVLLAQPKATPVQ*
Ga0138502_1074203	3300010943	Wastewater	MPNNQMRAILPLLKARVLERGADYFVIGFGPEHGSPTRIRIGCNMTMHDIRDGDILTLYTEVLLAQPKATPVQ*
Ga0137392_1000176818	3300011269	Vadose Zone Soil	MMIDKQLRAILPLLKARVVDRGQSHFTISFGPEYGSPTQIRIECNMDMYDLRDGDLLTIYTEVMLSQPKGTA*
Ga0137392_103513002	3300011269	Vadose Zone Soil	MMIDKQLRAILPLLKARVTDRGPTHFTISFGPEYGSPTQIRIECNMDMYDLRDGDLLTIYTEVMLSQPKGTA*
Ga0137392_105240554	3300011269	Vadose Zone Soil	MMNEKQLRAILPLLKARVVDRGQSHFTISFGPEYGSPTQIRIECNMDMYDLHDGDLLTIYTEVLLTQPKGTA*
Ga0137392_105829583	3300011269	Vadose Zone Soil	MTKQLRAILPLLKARVVDRGANHFTISFGLEYGSPTQIKIECNMDMYNLHDGDLLTIYTEVMLSQPKGTA*
Ga0137391_1000544313	3300011270	Vadose Zone Soil	MNEKQLRAILPLLKARVVDRGPSHFTISFGPEYGSPTQIRIECNMDMYDLHDGDLLTIYTEVMLTQPKGTA*
Ga0137391_100501438	3300011270	Vadose Zone Soil	MTKQLRASLPLLKARVINRGPSHFTISFGPEYGSPTQIRIECNMDMYDLHDGDLLTIYTEVLISQPKGTA*
Ga0137391_112423252	3300011270	Vadose Zone Soil	MMNEKQLRAILPLLKARVVDRGPSHFTISFGPEYGSPTQIRIECNMDMYDLRDGDLLTIYTEVLLSQPKGTA*
Ga0137393_100671164	3300011271	Vadose Zone Soil	MTNKSVRAIVPLLKARVINRGPTHFTISFGPEYGSPTQIRIECNMDMYDLHDGDLLTIYTEVLLSQPKGTA*
Ga0137389_100136191	3300012096	Vadose Zone Soil	VKGSVFVTNKPIRAILPLLKARVVDRGPIHFTISFGPEYGSPTQIKITCNMDMYDLHDGDLLTIY
Ga0137388_119237372	3300012189	Vadose Zone Soil	MNEKQLRAILPLLKARVVDRGQSHFTISFGPEYGSPTQIRIECNMDMYDLHDGDLLTIYTEVLLTQPKGTA*
Ga0137399_103832993	3300012203	Vadose Zone Soil	MQFKQWMNPMSEKQMRAILPLLKARITDRGPGHFTLSFGSEYGSPTTIRITCHTEMYDLHDGDILTLYTEVFLAKPT*
Ga0137362_101940182	3300012205	Vadose Zone Soil	MNEKRMRAILPLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRAGMYDLHDGDILTLYTEVLLAPPQG*
Ga0137362_103052452	3300012205	Vadose Zone Soil	MSEKRMRAILPLLKARITDRGPDHFTLSFGSEYGSSTTIRITCRTAMYDLHDGDVLTLYTEVLLVKPN*
Ga0137362_103429393	3300012205	Vadose Zone Soil	MSEKRMRAILPLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRASMYDLHDGDILTLYTEVLLNAQPT*
Ga0137362_103538252	3300012205	Vadose Zone Soil	MSEKRMRAILPLLKARITDRGPDHFTLSFGAEYGSSTTIRITCRAGMYDLHDGDILTLYTEVLLAQPN*
Ga0137362_103603892	3300012205	Vadose Zone Soil	MSAEPPTEVRAMSEKRMRAVLPLLKARVTDRGPDHFTLSFGSEYGSPTTIRITCRTGMYDLHDGDMLTLYTEVLLAPHNTS*
Ga0137362_107508672	3300012205	Vadose Zone Soil	MNEKRLRAILPLLKARITDRGPDHFTLSLGSEYGSPTTIRITCRASMYDLHDGDLLTLYTEVLLAPPQG*
Ga0137362_109710492	3300012205	Vadose Zone Soil	MPSNKQLRAILPLLKARIIDRGEGYFTLGFGAEYGSPTTIRISCDTKHYDIRDGDLLTLYTEVLLAKPSQSSIQ*
Ga0137362_113523921	3300012205	Vadose Zone Soil	MSEKRMRAILPLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRASMYDLHDGDMLTLYTEVLLAPPQG*
Ga0137377_117399582	3300012211	Vadose Zone Soil	MTKQLRAILPLLKARITDRGPDHFTISFGSEHGSPTTIRIGVNTAMYDLRDGDLLTLYTEVLLAKINS*
Ga0137387_106758671	3300012349	Vadose Zone Soil	RNHHSTNAGESMATERQMRAILPLLKARITDRSESHFTIGFGSEYGSPTTIRITCDTKHYDLRDGDLLTLYTEVLIKDANSSQSPIQ*
Ga0137360_100213158	3300012361	Vadose Zone Soil	MSAEPPTEVRAMSEKRMRAVLPLLKARVTDRGPDHFTLSFGSEYGSPTTIRITCRTGMYDLHDGDMLTLYTEVLLAPHNPS*
Ga0137360_117498892	3300012361	Vadose Zone Soil	MRAILPLLKARIVDRGEGYFTLGFGSEYGSPTTIRISCDTKHYDIRDGDLLTLYTEVLLANA
Ga0137361_106904442	3300012362	Vadose Zone Soil	MKQLRAILPLLKARIVDRGEGYFTLGFGAEYGSPTTIRVSCDTRHYDIRDGDLLTLYTEVLLVRPTEDQRSN*
Ga0137361_113231261	3300012362	Vadose Zone Soil	MPSTKQFRAILPLLKARIVDRGEGYFTLGFGAEYGSPTTIRVSCDTKHYDIRDGDLLTL
Ga0137361_119219922	3300012362	Vadose Zone Soil	MSGVKQLRAILPLLKARIIDRGEGYFTLGFGAEYGSPTTIRVSCDTKHYDIRDGDLLTLYTEVLLANAKPSEPSIQ*
Ga0137390_1001248317	3300012363	Vadose Zone Soil	MMNEKQLRAILPLLKARVVDRGPSHFTISFGPEYGSPTQIRIECNMDMYDLHDGDLLTIYTEVMLTQPKGTA*
Ga0137390_109306733	3300012363	Vadose Zone Soil	MMIDKQLRAILPLLKARVTDSGPTHFTISFGPEYGSPTQIRIECNMDMYDLRDGDLLTIYTEVMLSQPKGTA*
Ga0137358_100660431	3300012582	Vadose Zone Soil	MTKQLRAILPLLKARIVDCGEGYFTLGFGAEYGSPTTIRISCDTKHYDIRDGDLLTLYTEVLLAKPSQSPIQ*
Ga0137358_101119213	3300012582	Vadose Zone Soil	MRAILPLLKARIIDRGPGHFTLSFGSEYGSPTTIRITCQATMYDLHDGDILTLYTEVLLAKPI*
Ga0137358_101987332	3300012582	Vadose Zone Soil	MRAILPLLKARIVDRGEGYFTLGFGAEYGSPTTIRISCDTKHYDIRDGDLLTLYTEVLLAKPEMSS*
Ga0137358_103176971	3300012582	Vadose Zone Soil	QQARKGRPMESTKAQMRAILPLLKARIIDRGEGHFTLGFGSEYGSPTTIRISCNPRRYDLRDGDLLTLYTEVLLANAKPSESPIK*
Ga0137358_103266953	3300012582	Vadose Zone Soil	MTKQLRAILPLLKARIIDRGEGYFTLGFGAEYGSPTTIRISCDTKHYDIRDGDLLTLYTEVLLAKPDSVS*
Ga0137358_105688672	3300012582	Vadose Zone Soil	MRAILPLLKARIVDRGEGYFTLGFGSEYGSPTTIRISCDTKHYDIRDGDLLTLYTEVLLANAKPSEPPIQ*
Ga0137358_107892333	3300012582	Vadose Zone Soil	MRAILPLLKARITDRGPGHFTLSFGSEYGSPTTIRITCQATMYDLHDGDILTLYTEVLLA
Ga0137398_100354705	3300012683	Vadose Zone Soil	MRAVLPLLKARITDRGPGHFTLSFGSEYGSPTTIRITCRTSMYDLHDGDILTLYTEVILAQPS*
Ga0137398_100622012	3300012683	Vadose Zone Soil	MTQKQFRVILPLLKARITDRGPDYFTLSFGSEYGSPTTIRVTCQAQMYDLHDGDILTLYTEVLLAQPNN*
Ga0137398_103512032	3300012683	Vadose Zone Soil	MRGILPLLKARVVDRGPNHFTMFFGAEYGSPTTIRITLNSDLYDLRDGDLLTLYTEVPLKQG*
Ga0137397_107886402	3300012685	Vadose Zone Soil	MQFKQWMNPMSEKQMRAILPLLNARIPDRRPGHFTLSFGSEYGSPTTIRVTCRAEMYDLHDGDILTLYTEVLLAQANN*
Ga0137394_106911312	3300012922	Vadose Zone Soil	MPSTRQLRAILPLLKARIIDRGESHFTLGFGSEYGSPTTIRISCDTKHYDLRDGDLLTLYTEVLLAKPNS*
Ga0137359_102439993	3300012923	Vadose Zone Soil	MRAILPLLKARITDRGPGHFTLSFGSEYGSPTTIRITCQATMYDLHDGDILTLYTEVLLAKPI*
Ga0137359_103350462	3300012923	Vadose Zone Soil	MPSNKQLRAILPLLKARIIDRGEGYFTLGFGAEYGSPTTIRISCDTKHYDIRDGDLLTLYTEVLLAKPSQSPIQ*
Ga0137359_110014322	3300012923	Vadose Zone Soil	MPNQLRAILPLLKARVIDRSEAHFTIGFGSEYGSPTTIRISCDTKHYDLRDGDLLTLYTEVL
Ga0137419_112197012	3300012925	Vadose Zone Soil	WHGWVLGAFMTQKQFRVILPLLKARITDRGPDYFTLSFGSEYGSPTTIRVTCQAQMYDLHDGDILTLYTEVLLAQPNN*
Ga0137404_100216758	3300012929	Vadose Zone Soil	MNEKRMRAILPLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRASMYDLHDGDLLTLYTEVLLAQPTR*
Ga0137404_100370812	3300012929	Vadose Zone Soil	MSEKRMRAILPLGRARVIDRGPDHFTLSFGSEYGSSTTIRITCRAGMYDLHDGDILTLYTEVLLAQPN*
Ga0137404_100507775	3300012929	Vadose Zone Soil	MTQKQGRAILPLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRAAMYDLHDGDILTLYTEVFFAQPS*
Ga0137404_100523876	3300012929	Vadose Zone Soil	MSEKRMRAILPLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRTGMYDLHDGDMLTLYTEVLLAPHNPS*
Ga0137404_101256734	3300012929	Vadose Zone Soil	MIEKQLRAILPLLKARITDRSDRHFTIAFGSEYGSPTTIRISCNAGMYDLRDGDLLTLYTEVLLAPPQGSS*
Ga0137404_114133282	3300012929	Vadose Zone Soil	MKQLRAILPLLKARIVDRGEGYFTLGFGAEYGSPTTIRISCDTKHYDIRDGDFLTLYTEVLLAKPSQSPIQ*
Ga0137404_116933011	3300012929	Vadose Zone Soil	KRMRAILPLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRASMYDLHDGDILTLYTEVLLAQSS*
Ga0137407_119015962	3300012930	Vadose Zone Soil	PLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRASMYDLHDGDILTLYTEVLLAQSS*
Ga0137410_103411102	3300012944	Vadose Zone Soil	MESAQAKMKQLRAILPLLKARITDRSDSHFTISFGSEYGSPTTIRISCDTKHYDLRDGDLLTLYTEVLLAKPEMSS*
Ga0137410_111476612	3300012944	Vadose Zone Soil	MRAILPLLKARITDRGPGHFTLSFGSEYGSPTTIRITCRASMYDLHDGDILTLYTEVLLAKPS*
Ga0137410_115620221	3300012944	Vadose Zone Soil	MESAKKSLRAILPLLKARITDRGPHHFTISFGAEHGSPTTIRVELNMDLYDIRDGDLLTLYTEVMIKPAGG*
Ga0157374_104145663	3300013296	Miscanthus Rhizosphere	MTDPKKRLRAILPLLKARIIDRGPGYFTISFGHEHGAPTTIRIDCNVDAYDLRDGDRLTLYTEVLYKEAKQ*
Ga0181532_105241602	3300014164	Bog	MRAILPLLKARIIARDATSFTIGFGPEYGSPTRIRVECHMAMYDIHDGDLLTLYTEVLLAQPSQSPVQ*
Ga0182016_101093281	3300014493	Bog	MTLRAILPLFKARITDRGPNHFTISFGLEHGSPTTIRISCNTDMYDLRDGDLLTLYTEVLLAKPSQPPI*
Ga0119960_10048573	3300014811	Aquatic	MTLRAILPLLKAHATSITDTGFSIAIGAEYGSPTTIRIAADTRRMDLRDGDLLTLYTEVLIRNPTDAS*
Ga0137405_10118625	3300015053	Vadose Zone Soil	MLMNEKRMRAILPLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRASMYDLHDGDILTLYTEVLLAQSS*
Ga0137405_10171749	3300015053	Vadose Zone Soil	MNEKRMRAILPLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRASMYDLHDGDILTLYTEVLLAQSS*
Ga0137405_10919115	3300015053	Vadose Zone Soil	MLMNEKRMRAILPLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRAGMYDLHDGDILTLYTEVLLAPPQG*
Ga0137418_108392922	3300015241	Vadose Zone Soil	HKSPSGYMAGAMVCIGPWHGWVLGAFMTQKQFRVILPLLKARITDRGPDYFTLSFGSEYGSPTTIRVTCQAQMYDLHDGDILTLYTEVLLAQPNN*
Ga0137403_100992322	3300015264	Vadose Zone Soil	MTSTKQLRAILPLLKARIVDRGEGYFTLGFGAEYGSPTTIRISCDTKHYDIRDGDLLTLYTEVLLAKPTHNSNGPEGVR*
Ga0137403_102792053	3300015264	Vadose Zone Soil	MSAEPPTEVRAMSEKRMRAILPLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRTGMYDLHDGDMLTLYTEVLLAPHNPS*
Ga0181344_11479321	3300017754	Freshwater Lake	VEGTLMALRATMPLLKARIIERGPDYFVMSFGSEYGSPTRITVRPQQPMTAFDLRDGDLLTLYTEVPFAERKPNA
Ga0184628_100574124	3300018083	Groundwater Sediment	MNETKHMRAVLPLLKARITARSADGFTISFGSEYGSPTTIRITTDTTCLDLRDGDLLTLYTEVLLAKANQ
Ga0137408_11264292	3300019789	Vadose Zone Soil	MNEKRMRAILPLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRAGMYDLHDGDILTLYTEVLLAPPQG
Ga0137408_11803932	3300019789	Vadose Zone Soil	MTQKQGRAILPLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRAAMYDLHDGDILTLYTEVFFAQPS
Ga0137408_11850202	3300019789	Vadose Zone Soil	MSAEPPTEVRAMSEKRMRAILPLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRTGMYDLHDGDMLTLYTEVLLAPHNPS
Ga0137408_12250236	3300019789	Vadose Zone Soil	KARITDRGPDHFTLSFGSEYGSPTTIRITCRAGMYDLHDGDILTLYTEVLLAPPQG
Ga0137408_13746762	3300019789	Vadose Zone Soil	SEKRMRAILPLLKARITDRGPDHFTLSFGSEYGSPTTIRITCRTGMYDLHDGDMLTLYTEVLLAPHNPS
Ga0193727_10001409	3300019886	Soil	MSTEKQMRAILPLLKARITDRGPGHFTLSFGAEYGSPTTIRISCDTSSYDLRDGDLLTLYTEVLLAKPS
Ga0193727_10069146	3300019886	Soil	MESTKGQMRAILPLLKARITDRGPNHFTLSFGSEYGSPTTIRISCQTSMYDLRDGDLLTLYTEVLLAKPRSTSV
Ga0193727_11152112	3300019886	Soil	MESAKGKMRAILPLLKARITDRGPNHFTLSFGSEYGSPTTIRISCQTNMYDLQDGDLLTLYTEVMLAKHKQTEGN
Ga0193718_100094916	3300019999	Soil	VEPIEKQMRAILPLLKARITDRGPGHFTLSFGSEYGSPTTIRISCQTSMYDLRDGDLLTLYT
Ga0193755_10043824	3300020004	Soil	MESTPKQMRATLPLLKARITDRSSGHFTLSFGSEYGSPTTIRISCDTSVFDLRDGDLLTLYTEVLLAKPS
Ga0179596_103287262	3300021086	Vadose Zone Soil	MESPSRTMRGILPLLKARVVDRGPNHFTMFFGAEYGSPTTIRITLNSDLYDLRDGDLLTLYTEVPLKQG
Ga0210404_100069321	3300021088	Soil	MANKPLRAILPLLRARIIDRSDTHFTIGFGSEYGSPTTIRIAIDAKRYDLRDGDILTLYTEVLLAQPSGPSI
Ga0210404_1001157210	3300021088	Soil	MNKPLRAILPLLRARIIDRSDTHFTIGFGSEYGSPTTIRIAIDAKRYDLRDGDILTLYTEVLLAQPSGPSI
Ga0210396_102552402	3300021180	Soil	MLEKTSRAILPLLKARVTAITEGGFIITFGFDHGSPTTIKIVTDTRVFDLHDGDLVTLYTEVLLKSAKGNG
Ga0210389_1002926610	3300021404	Soil	VTDKKQVRAVLPLLKARITARTESSFTISFGAEHGSPTTIKIFADTRMYDLRDGDLLTLYTEVLLAPPQG
Ga0210394_108257412	3300021420	Soil	MTEPRMRAILPLLKARITARSADGFTISFGPEYGSPTTIRISMPTARFDLRDGDILTLYTEVLINAPANPTTN
Ga0179589_105317942	3300024288	Vadose Zone Soil	MESTKAQMRAILPLLKARIIDRGEGHFTLGFGSEYGSPTTIRISCDTKHYDIRDGDLLTLYTEVLLANAKPSQSPIQ
Ga0209647_10556574	3300026319	Grasslands Soil	MESSKGQVRAILPLLKARVVERGEGYFKIAFGYDHGSPTTIRIAHHIDRIDIRDGDLLTLYTEVLLTKPEG
Ga0209131_100014846	3300026320	Grasslands Soil	MTKQLRAILPLLKARIVDRSDSHFTIGFGSEYGSPTNIRISCDTKHYDLRDGDLLTLYTEVLLANAKPSESPIQ
Ga0209701_100599326	3300027862	Vadose Zone Soil	MMIDKQLRAILPLLKARVTDRGPTHFTISFGPEYGSPTQIRIECNMDMYDLRDGDLLTIYTEVLITQPKGTA
Ga0209701_101584834	3300027862	Vadose Zone Soil	MTKQLRAILPLLKAHVVDRGPDHFTISFGPEYGSPTQIKIECNMDMYDLRDGDLLTIYTEVLLSQPKGTT
Ga0209488_101133462	3300027903	Vadose Zone Soil	MMNEKQLRAILPLLKARVVDRGQSHFTISFGPEYGSPTQIRIECNMDMYDLSDGDLLTIYTEVMLSQPKGTA
Ga0209168_1000069723	3300027986	Surface Soil	MAEAAKPMRAILPLLKARIVDRGPTHFTLSFGPEYGSPTTIRISTNTERYDLRDGDILTLYTEVFLAQPKPTSIE
Ga0137415_112935052	3300028536	Vadose Zone Soil	MQFEQWMNPMSEKQMRAILPLLKARITDRGPGHFTLSFGSEYGSPTTIRITCRAAMYDLHDGDILTLYTEVFLAKPT
Ga0302149_11519733	3300028552	Bog	MTLRAILPLLKARVIERNPSGFVLAFGSEYGSPTRITIACNMNNYDLRDGDLLTLYTEVLLKGPDNA
Ga0302147_101204072	3300028566	Bog	MTLRAILPLLKARVIERNPSGFVLAFGSEYGSPTRITIACNMNNYDLRDGDLLTLYTEVLLAKPSQPPI
Ga0311341_102510892	3300029908	Bog	PSMEPLLRSQWWRMTLRAILPLLKARVIERNPSGFVLAFGSEYGSPTRITIACNMNNYDLRDGDLLTLYTEVLLAKPSQPPI
Ga0311359_101380206	3300029914	Bog	RSQWWRMTLRAILPLLKARVIERNPSGFVLAFGSEYGSPTRITIACNMNNYDLRDGDLLTLYTEVLLAKPSQPPI
Ga0307509_1000119519	3300031507	Ectomycorrhiza	MKPQTRIILPLLKARITDRSPTHFTISFGAEHGSPTTIRLAINTEMLDLRDGDLLTLYTEVLLAKS
Ga0307516_100041552	3300031730	Ectomycorrhiza	MSNKSRRIILPLLKARITDRSPTHFTISFGAEYGSPTTIRLAINTEMLDLRDGDLLTLYTEVLLAKS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F091503

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences