NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F091444

Metagenome / Metatranscriptome Family F091444

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091444
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 60 residues
Representative Sequence GMKAFLYSCLVAAVSAVDEHSKATLDGLVKDNGKTLFEADSDSRTQDDQEIIPDTDIDPLTH
Number of Associated Samples 78
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.69 %
% of genes near scaffold ends (potentially truncated) 53.27 %
% of genes from short scaffolds (< 2000 bps) 50.47 %
Associated GOLD sequencing projects 67
AlphaFold2 3D model prediction Yes
3D model pTM-score0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (55.140 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(57.944 % of family members)
Environment Ontology (ENVO) Unclassified
(56.075 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(57.944 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 25.56%    β-sheet: 0.00%    Coil/Unstructured: 74.44%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.26
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF10101DUF2339 6.54
PF14559TPR_19 3.74
PF04226Transgly_assoc 2.80
PF13174TPR_6 0.93
PF07719TPR_2 0.93
PF01887SAM_HAT_N 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG2261Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein familyGeneral function prediction only [R] 2.80
COG1912Stereoselective (R,S)-S-adenosylmethionine hydrolase (adenosine-forming)Defense mechanisms [V] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms55.14 %
UnclassifiedrootN/A44.86 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001661|JGI12053J15887_10144331All Organisms → cellular organisms → Bacteria → Acidobacteria1255Open in IMG/M
3300002917|JGI25616J43925_10085799All Organisms → cellular organisms → Bacteria → Acidobacteria1312Open in IMG/M
3300005167|Ga0066672_10141731All Organisms → cellular organisms → Bacteria → Acidobacteria1501Open in IMG/M
3300005167|Ga0066672_10219227All Organisms → cellular organisms → Bacteria → Acidobacteria1217Open in IMG/M
3300005175|Ga0066673_10015725All Organisms → cellular organisms → Bacteria → Acidobacteria3374Open in IMG/M
3300007258|Ga0099793_10543147All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium580Open in IMG/M
3300009012|Ga0066710_103387406All Organisms → cellular organisms → Bacteria → Acidobacteria606Open in IMG/M
3300009038|Ga0099829_10245355All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1459Open in IMG/M
3300009038|Ga0099829_10434995All Organisms → cellular organisms → Bacteria → Acidobacteria1086Open in IMG/M
3300009088|Ga0099830_10147489All Organisms → cellular organisms → Bacteria → Acidobacteria1807Open in IMG/M
3300009088|Ga0099830_10282830All Organisms → cellular organisms → Bacteria → Acidobacteria1320Open in IMG/M
3300009088|Ga0099830_10441862All Organisms → cellular organisms → Bacteria → Acidobacteria1056Open in IMG/M
3300009088|Ga0099830_10919254All Organisms → cellular organisms → Bacteria → Acidobacteria724Open in IMG/M
3300009089|Ga0099828_10963506All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium761Open in IMG/M
3300009137|Ga0066709_102283685All Organisms → cellular organisms → Bacteria → Acidobacteria742Open in IMG/M
3300010322|Ga0134084_10260741All Organisms → cellular organisms → Bacteria → Acidobacteria630Open in IMG/M
3300010857|Ga0126354_1248475All Organisms → cellular organisms → Bacteria → Acidobacteria801Open in IMG/M
3300012096|Ga0137389_11441448All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium584Open in IMG/M
3300012198|Ga0137364_10658609All Organisms → cellular organisms → Bacteria → Acidobacteria790Open in IMG/M
3300012198|Ga0137364_10810761All Organisms → cellular organisms → Bacteria → Acidobacteria707Open in IMG/M
3300012203|Ga0137399_10010222All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5600Open in IMG/M
3300012203|Ga0137399_10245747All Organisms → cellular organisms → Bacteria → Acidobacteria1466Open in IMG/M
3300012203|Ga0137399_10557232All Organisms → cellular organisms → Bacteria → Acidobacteria963Open in IMG/M
3300012203|Ga0137399_10854907All Organisms → cellular organisms → Bacteria → Acidobacteria766Open in IMG/M
3300012207|Ga0137381_11443317All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium580Open in IMG/M
3300012362|Ga0137361_10211875All Organisms → cellular organisms → Bacteria → Acidobacteria1755Open in IMG/M
3300012582|Ga0137358_10938935All Organisms → cellular organisms → Bacteria → Acidobacteria564Open in IMG/M
3300012582|Ga0137358_10941462All Organisms → cellular organisms → Bacteria → Acidobacteria563Open in IMG/M
3300012685|Ga0137397_10993854All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium618Open in IMG/M
3300012918|Ga0137396_10296194All Organisms → cellular organisms → Bacteria → Acidobacteria1196Open in IMG/M
3300012923|Ga0137359_11605099All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium538Open in IMG/M
3300012927|Ga0137416_10716880All Organisms → cellular organisms → Bacteria → Acidobacteria880Open in IMG/M
3300012929|Ga0137404_12051376All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium534Open in IMG/M
3300012930|Ga0137407_11332360All Organisms → cellular organisms → Bacteria → Acidobacteria682Open in IMG/M
3300012944|Ga0137410_10189811All Organisms → cellular organisms → Bacteria → Acidobacteria1586Open in IMG/M
3300012977|Ga0134087_10382834All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium680Open in IMG/M
3300012977|Ga0134087_10551568All Organisms → cellular organisms → Bacteria → Acidobacteria589Open in IMG/M
3300015264|Ga0137403_10824165All Organisms → cellular organisms → Bacteria → Acidobacteria781Open in IMG/M
3300017961|Ga0187778_11100735All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium553Open in IMG/M
3300018482|Ga0066669_10613387All Organisms → cellular organisms → Bacteria → Acidobacteria955Open in IMG/M
3300020170|Ga0179594_10040002All Organisms → cellular organisms → Bacteria → Acidobacteria1542Open in IMG/M
3300020170|Ga0179594_10209432All Organisms → cellular organisms → Bacteria → Acidobacteria731Open in IMG/M
3300020170|Ga0179594_10243607All Organisms → cellular organisms → Bacteria → Acidobacteria677Open in IMG/M
3300020579|Ga0210407_10249530All Organisms → cellular organisms → Bacteria → Acidobacteria1383Open in IMG/M
3300021171|Ga0210405_10198812All Organisms → cellular organisms → Bacteria → Acidobacteria1589Open in IMG/M
3300021432|Ga0210384_10182003All Organisms → cellular organisms → Bacteria → Acidobacteria1888Open in IMG/M
3300021855|Ga0213854_1061259All Organisms → cellular organisms → Bacteria → Acidobacteria1066Open in IMG/M
3300024330|Ga0137417_1290394All Organisms → cellular organisms → Bacteria → Acidobacteria3044Open in IMG/M
3300026309|Ga0209055_1123599All Organisms → cellular organisms → Bacteria → Acidobacteria975Open in IMG/M
3300026328|Ga0209802_1335491All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium500Open in IMG/M
3300026528|Ga0209378_1027767All Organisms → cellular organisms → Bacteria → Acidobacteria3024Open in IMG/M
3300026547|Ga0209156_10226879All Organisms → cellular organisms → Bacteria → Acidobacteria880Open in IMG/M
3300026557|Ga0179587_10401076All Organisms → cellular organisms → Bacteria → Acidobacteria894Open in IMG/M
3300027591|Ga0209733_1108293All Organisms → cellular organisms → Bacteria → Acidobacteria696Open in IMG/M
3300027846|Ga0209180_10585466All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium618Open in IMG/M
3300027862|Ga0209701_10615564All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium573Open in IMG/M
3300027875|Ga0209283_10002396All Organisms → cellular organisms → Bacteria → Acidobacteria10481Open in IMG/M
3300028536|Ga0137415_11043274All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium629Open in IMG/M
3300031590|Ga0307483_1006477All Organisms → cellular organisms → Bacteria → Acidobacteria943Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil57.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil9.35%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil6.54%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil6.54%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.61%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil4.67%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.80%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.87%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds0.93%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.93%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.93%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.93%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002562Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300002917Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cmEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010857Boreal forest soil eukaryotic communities from Alaska, USA - W1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012400Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021855Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)EnvironmentalOpen in IMG/M
3300026359Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-AEnvironmentalOpen in IMG/M
3300026482Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-BEnvironmentalOpen in IMG/M
3300026515Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-AEnvironmentalOpen in IMG/M
3300026528Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027383Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027591Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031590Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1007531873300001593Forest SoilLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADSDSLTKDDREIIPDPDIDPLTH*
JGI12053J15887_1014433113300001661Forest SoilSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADSESRTEDDRDILPDPDIDPLTH*
JGI12053J15887_1063891813300001661Forest SoilQFRKSMKAFLYSCLVAAVSAVDEHSKSTLDGLLKDNGKTLREGNGESRTAEDEQIIPDTDIDPFTH*
JGI25382J37095_1017211823300002562Grasslands SoilFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLLKDNGKTLYEGSTEPGAKDDREIIPGADVDPLTH*
JGI25617J43924_1029916713300002914Grasslands SoilAVDEHSKSTLDGLVKDNGKTLFEAASDSRTQDDREIIPDPDIEPLTH*
JGI25616J43925_1008579913300002917Grasslands SoilRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADGESRTEDDRDILPDPDIDPLTH*
Ga0066672_1014173143300005167SoilSCLVAAVSAVDEHSKSTLDGLVKDNGKTVFEGDKESSTQEDAGIIPNTDIDPITH*
Ga0066672_1021922713300005167SoilSCLVAAVSAVDEHSKSTLDGLVKDNGKTVFEGDKESSTQDDAGIIPNTDIDPITH*
Ga0066672_1077528713300005167SoilVAAVSAVDEHSKSTLDGLVKDNGKTLFEAESDSGTEDNGETTPDTDIDPLTH*
Ga0066673_1001572543300005175SoilDQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTVFEADKESSTQEDAGIIPNTDIDPITH*
Ga0066679_1043621223300005176SoilCLVAAVSAVDEHSKSTLDGLVKDNGKTVFEAEKDPHTQDDQEIVPNTDIDPITH*
Ga0066701_1060859113300005552SoilVAAVSAVDEHSKSTLDGLVKDNGKTVFEADKESSTQEDAGIIPNTDIDPITH*
Ga0079219_1242762123300006954Agricultural SoilAAVSAVDEHSKSTLDGLTKDNGKTLFDSASDSHSSDDPQIIPNPDTDPLTH*
Ga0099793_1054314713300007258Vadose Zone SoilRKSMKAFLYSCLVAAVSAVDEHSKSTLDGLLKDNGKTLREGNGESHTQDDTPIISDQDIDPLTH*
Ga0099794_1071873713300007265Vadose Zone SoilKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADRDSQSQDNREILPDPDIDPLTH*
Ga0066710_10338740613300009012Grasslands SoilVSAVDEHSKSTLDGLVKDNGKTVFEGDKESSTQDDAGIIPNTDIDPITH
Ga0099829_1024535533300009038Vadose Zone SoilMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADGESRTQDEGEIIPDPDVDPLTH*
Ga0099829_1043499513300009038Vadose Zone SoilTEQFRKGMKAFLYSCLVAAVSAVDEHSKATLDGLVKDNGKTLFEADSDSRTQDGQEVIPDTDIDPLTH*
Ga0099829_1172898013300009038Vadose Zone SoilLYSCLVAAVSAVDEHSKSTLDGLLKDNGKTLYEGNSEPGAKDDREITPGTDVDPLTH*
Ga0099830_1014748913300009088Vadose Zone SoilDQFRKGMKAFLYSCLVAAVSAVDEHSKATLDGLVKDNGKTLFEADSDSRTQDDQEIIPDTDIDPLTH*
Ga0099830_1028283033300009088Vadose Zone SoilVAAVSAVDEHSKSTLDGLVKDSGKTLFEAETDSRTQEDQEIIPDTGIDPLTH*
Ga0099830_1044186223300009088Vadose Zone SoilKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFESDSDSRTQEDGKIISDTDIDPLTH
Ga0099830_1085216513300009088Vadose Zone SoilYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADTDSRAKDDPEIIPNTDIDPLTH*
Ga0099830_1091925413300009088Vadose Zone SoilRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADGESRTQDEGEIIPDPDVDPLTH*
Ga0099828_1003935843300009089Vadose Zone SoilSTEQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLLKDNGKTLLEADSDSRTQEDREIIPDTDIDPLTH*
Ga0099828_1025683413300009089Vadose Zone SoilLVAAVSAVDEHSKSTLDGLVKDNGKTLFDADSDSRPKDDPEILPGTDIDPLTH*
Ga0099828_1096350623300009089Vadose Zone SoilVAAVSAVDEHSKSTLDGLVKDNGKTLFEAESDSRAKDDPEILPDTDIDPLTH*
Ga0066709_10228368513300009137Grasslands SoilQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADTDSRTQDDPEIIPNTDIDPLTH*
Ga0099792_1007036233300009143Vadose Zone SoilSTDQFRKSMKAFLYSCLVAAVSAVDEHSKSTLDGLLKDNGKTLHEGNGETHSEDDTPIIPDPDIDPLTH*
Ga0134084_1026074113300010322Grasslands SoilTEQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTVFEAEKDPHTQDDQEIVPNTDIDPITH*
Ga0126354_124847523300010857Boreal Forest SoilERSTDQFRKGMKAFLYSCLVAAVSAVDEHSKATLDGLLKDNGKTLHEGNGETHTQDDAPIIPDTDIDPLTH*
Ga0137391_1017919513300011270Vadose Zone SoilQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADSDSRTQDDREIIPDTDIDPLTH*
Ga0137391_1154847413300011270Vadose Zone SoilDQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLTKDNGKTVFEAKTDSRTQQDDREITPGTDIDPLTH*
Ga0137389_1144144823300012096Vadose Zone SoilDEFRKGMKAFLYSCLVAAVSAVDEHSKSTLEGLVKDNGKTLFESASDSRTQDDSEIIPDTDIDPLTH*
Ga0137364_1065860923300012198Vadose Zone SoilLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADGESRTQDEGEIIPDPNTDPLTH*
Ga0137364_1081076113300012198Vadose Zone SoilQFRKGLKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFESSSHSGTENDRVTIPDTDNDPLTH*
Ga0137364_1116628523300012198Vadose Zone SoilRKGLKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFESSSDSGTKNEGVIVPHTDNDPLTH*
Ga0137363_1169311613300012202Vadose Zone SoilGMKAFLYSCLVAAVSAVDEHSKSTLDGLAKDNGKTVFEADKESHTQEDREIVPNTDIDPITH*
Ga0137399_1001022273300012203Vadose Zone SoilSCLVAAVSAVDEHSKSTLDGLAKDNGKTVFEADKESHTQEDREIVPNTDIDPITH*
Ga0137399_1024574733300012203Vadose Zone SoilYSCLVAAVSAVDEHSKSTLDGLVKDNGKTVFEADKESHAQEDAEIIPKTDIDPITH*
Ga0137399_1055723213300012203Vadose Zone SoilTDQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEAENDSRTKDDQEIIPNTDIDPLTH*
Ga0137399_1085490723300012203Vadose Zone SoilAAVSAVDEHSKSTLDGLVKDNGKTLFEADSDSRTQDEGETIPDPDVDPLTH*
Ga0137362_1146843913300012205Vadose Zone SoilVAAVSAVDEHSKSTLDGLVKDNGKTLFESDSDSHNQDDPPIIPDTDIDPLTH*
Ga0137381_1144331723300012207Vadose Zone SoilDQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADTDSRTQDDPEIIPNTDIDPLTH*
Ga0137378_1161370313300012210Vadose Zone SoilEQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLLKDNGKTLYEASSEPGVKDDREIIPGTDVDPLTH*
Ga0137361_1021187513300012362Vadose Zone SoilDQFRKGMKAFLYSCLVAAVSAVDEHSKSTLEGLIKDNGKTLYEAKGDSLAKDDTEIIPDTDIDPLTH*
Ga0137361_1054175913300012362Vadose Zone SoilSAVDEHSKSTLDGLTKDNGKTVFEADTGSRPQQDDREIIPDTDIDPLTH*
Ga0134048_101375623300012400Grasslands SoilVAAVSAVDEHSKSTLDGLVKDNGKTVFEAEKDPHTQDDQEIVPNTDIDPITH*
Ga0137358_1093893513300012582Vadose Zone SoilCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEAENDSRTKDDPEIIPNTDIDPLTH*
Ga0137358_1094146213300012582Vadose Zone SoilCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEAENDSRTKDDQEIIPNTDIDPLTH*
Ga0137397_1099385423300012685Vadose Zone SoilFRKGMKAFLYSCLVAAVSAVDEHSKSTLGGLVKDNGKTLFDADSDSRPKDDPEILPGTDIDPLTH*
Ga0137395_1015312813300012917Vadose Zone SoilMKAFLYSCLVAAVSAVDEHSQSTLDGLVKDNGKALFESNIDSGTEYNGGIIPATDNDPLAH*
Ga0137396_1029619423300012918Vadose Zone SoilLVAAVSAVDEHSKSTLDGLVKDNGKTLFEGESDSRTKDDPEILPDTDIDPLTH*
Ga0137396_1115359713300012918Vadose Zone SoilKGMKAFLYSCLVAAVSAVDEHSKSTLDGLLKDNGKTLREGNGESHTQDDTPIISDQDIDPLTH*
Ga0137359_1160509913300012923Vadose Zone SoilLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTVFEADKESHTQEDREIIPNTDIDPITH*
Ga0137419_1105779013300012925Vadose Zone SoilLVAAVSAVDEHSKSTLDGLIKDNGKTLHEGNGESRTPEDPQIIPDTDIDPLTH*
Ga0137419_1163561113300012925Vadose Zone SoilGMKAFLYSCLVAAVSAVDEHSKSTLDALVKDNGKTVFEAEKESHAQEGQEIIPNADIDPITH*
Ga0137416_1071688013300012927Vadose Zone SoilSTDQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLLKDNGKTLHEANGESGAQEDGQIIPDTDTDPLTH*
Ga0137404_1205137613300012929Vadose Zone SoilRSTDQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEAENDSRTKDDQEIIPNTDIDPLTH*
Ga0137407_1133236013300012930Vadose Zone SoilAERSTDQFRKSMKAFLYSCLVAAVSAVDEHSKATLDGLLKDNGKTIHEGNGETHSEDDTPIIPDPDIDPLTH*
Ga0137410_1003414213300012944Vadose Zone SoilMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEAENDSRTKDDPEIIPNTDIDPLTH*
Ga0137410_1018981133300012944Vadose Zone SoilYSCLVAAVSAVDEHSKATLDGLLKDNGKTIHEGNGETHAEDDTPIIPDPDTDPLTH*
Ga0137410_1048131013300012944Vadose Zone SoilLVAAVSAVDEHSKSTLEGLIKDNGKTLHEGNGESRTPEDPQIIPDTDIDPLTH*
Ga0134087_1038283413300012977Grasslands SoilQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFESNSDSGTENDRVPDTDNDPLTD*
Ga0134087_1055156813300012977Grasslands SoilAVSAVDEHSKSTLDGLVKDNGKTVFEGDKESSTQDDAGIIPNTDIDPITH*
Ga0134078_1016483723300014157Grasslands SoilSCLVAAVSAVDEHSKSTLEGLVKDNGKTLFEADGESRTQDEGEIIPDPNTDPLTH*
Ga0137411_123074523300015052Vadose Zone SoilMKAFLYSCLVAAVSAVDEHSKSTLDGLLKDNGKTLHEGNGETHSEDDTPIIPDPDIDPLTH*
Ga0137420_101533143300015054Vadose Zone SoilFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADGESRTEDDRDILPDPDIDPLTH*
Ga0137420_138875133300015054Vadose Zone SoilKGMKAFLYSCLVAAVSAVDEHSKSTLDGLIKDNGKTLFEADSDSRTEDEEEIIPDPDIDPLTH*
Ga0137412_1070711313300015242Vadose Zone SoilSAVDEHSKSTLDGLVKDNGKTLFESDSDSHNQDDPPIIPKTDIDPLTH*
Ga0137403_1082416513300015264Vadose Zone SoilVAAVSAVDEHSRSTLDVLLKDNGKTLHEGNGETHSEDDTPIIPDPDIDPLTH*
Ga0187819_1003808853300017943Freshwater SedimentTDEFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLLKHNGETRFGSSSESPAKEENGIIPDPDIDSLTR
Ga0187817_1057594813300017955Freshwater SedimentTDEFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLLKHNGETRFGSSSESPAKEENGIIPDPDIDSLTH
Ga0187778_1110073523300017961Tropical PeatlandFRKGMKAFLYSCLVAAVSAVDEHSRSTLDGLLKHNGETRFGTSGESPTKEENGIVPDPDIDSLTH
Ga0066669_1061338713300018482Grasslands SoilLVAAVSAVDEHSKSTLDGLVKDNGKTLFESSSESGTENDRVIIPDTDNGPLTH
Ga0179594_1004000213300020170Vadose Zone SoilLKSMKAFLYSCLVAAVSAVDEHSKATLDGLLKDNGKTIHEGNGETHSEDDTPIIPDPDIDPLTH
Ga0179594_1020943223300020170Vadose Zone SoilKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFESDSDSRTEEDGKIIPSTDIDPLTH
Ga0179594_1024360723300020170Vadose Zone SoilVAAVSAVDEHSKSTLDGLVKDNGKTLFESDSDSRTEEDGKIIPGTDIDPLTH
Ga0179592_1021867523300020199Vadose Zone SoilSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFDADSDSRPKDDPEILPGTDIDPLTH
Ga0210407_1024953013300020579SoilQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADGESRTQDEGEIIPDPDVDPLTH
Ga0210405_1019881233300021171SoilAFLYSCLVAAVSAVDEHSKSTMVALTQDNGKTLFDPEPDSRAKEDSEIIPDTDTDPLTH
Ga0210384_1018200313300021432SoilQFRKSMKACLYSCLVAAVSAVDEHSKATLDGLLKDNGKGLYDATGDSRTQDEPEIIPNSDIDPLTH
Ga0213854_106125913300021855WatershedsMKAFLYSCLVAAVSAVDEHSKSTLEGLTKDNGKTLFEAENDSRTKDEPEILPNSEIDPLT
Ga0137417_113998223300024330Vadose Zone SoilYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADGESRTEDDRDILPDPDIDPLTH
Ga0137417_129039443300024330Vadose Zone SoilRSRDQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADGESRTEDDRDILPDPDIDPLTH
Ga0137417_138100813300024330Vadose Zone SoilMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFESDSDSRTEEDGKIIPSTDIDP
Ga0209055_112359913300026309SoilLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTVFEGDKESSTQDDAGIIPNTDIDPITH
Ga0209802_133549113300026328SoilDQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADTDSRTQDDPEIIPNTDIDPLTH
Ga0209158_120799613300026333SoilAAVSAVDEHSKSTLDGLVKDNGKTVFEGDKESSTQEDAGIIPNTDIDPITH
Ga0257163_102627023300026359SoilSAVDEHSKSTLDGLIKDNGKTLFEADSDSRTEDEEEIIPDPDIDPLTH
Ga0257172_101388813300026482SoilVAAVSAVDEHSKSTLDGLVKDNGKTLFEADGESRTEDDRDILPDPDIDPLTH
Ga0257158_100541533300026515SoilSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADGESRTEDDRDILPDPDIDPLTH
Ga0209378_102776743300026528SoilERSTDQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTAFEADKESSTQEDAGIIPNTDIDPITH
Ga0209156_1022687923300026547SoilSTDQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTVFEADKESSTQEDAGIIPDTDIDPITH
Ga0209648_1037868413300026551Grasslands SoilSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFDADSDSRLKDDPEILPGTDIDPLTH
Ga0179587_1040107613300026557Vadose Zone SoilSTDQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLAKDNGKTVFEADKESHTQEDREIVPNTDIDPITH
Ga0209213_110498213300027383Forest SoilERSRDQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLIKDNGKTLFEADSDSRTEDEEEIIPDPDIDPLTH
Ga0209733_110829323300027591Forest SoilAFLYSCLVAAVSAVDEHSKSTLDGLVKENGKTLFEGDSDSHTEEDQEIIPDTDIDPLTH
Ga0209118_121584113300027674Forest SoilAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEPDSDSLTKDDREILPDPDIDPLTH
Ga0209180_1058546613300027846Vadose Zone SoilDQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDNGKTLFEADSDSRTQDDREIIPDTDIDPLTH
Ga0209701_1061556413300027862Vadose Zone SoilGMKAFLYSCLVAAVSAVDEHSKATLDGLVKDNGKTLFEADSDSRTQDDQEIIPDTDIDPLTH
Ga0209283_10002396103300027875Vadose Zone SoilSTEQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLLKDNGKTLLEADSDSRTQEDREIIPDTDIDPLTH
Ga0137415_1104327423300028536Vadose Zone SoilQRSTEQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLIKDNGKTLFEADSDSRTEDEEEIIPDPDIDPLTH
Ga0222749_1005754133300029636SoilKAFLYSCLVAAVSAVDEHSKSTLDGLLKDNGKTLYEAGSDAGKADDTEIIPDQDIDPLTH
Ga0307483_100647713300031590Hardwood Forest SoilDQFRKGMKAFLYSCLVAAVSAVDEHSKSTLDGLTKDNGKTLFAAENDSPTSDDEEIIPDKDLDPFTH
Ga0307475_1070813213300031754Hardwood Forest SoilGMKAFLYSCLVAAVSAVDEHSKSTLDGLVKDKDNGKTLFDPEPDSRAKEGSEIIPDTDIDPLTH
Ga0307471_10340249913300032180Hardwood Forest SoilYSCLVAAVSAVDEHSKATLDGLVKDNGKTIREGNGETHSQDDTPIIPEQDIDPLTH


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