Basic Information | |
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Family ID | F091408 |
Family Type | Metagenome |
Number of Sequences | 107 |
Average Sequence Length | 47 residues |
Representative Sequence | VTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAARLQQQSEEQ |
Number of Associated Samples | 86 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 97.20 % |
% of genes near scaffold ends (potentially truncated) | 99.07 % |
% of genes from short scaffolds (< 2000 bps) | 86.92 % |
Associated GOLD sequencing projects | 78 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.47 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (100.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (49.533 % of family members) |
Environment Ontology (ENVO) | Unclassified (42.991 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (49.533 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 56.94% β-sheet: 0.00% Coil/Unstructured: 43.06% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.47 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Watersheds Vadose Zone Soil Tropical Forest Soil Grasslands Soil Surface Soil Peatlands Soil Soil Grasslands Soil Soil Forest Soil Hardwood Forest Soil Forest Soil Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12636J13339_10071741 | 3300001154 | Forest Soil | MTPRWRVWLLVGLALAVIAAVIYFPILRRRVQRAARLQQQS |
JGI12635J15846_100442881 | 3300001593 | Forest Soil | MTPRWKFWLIGGLIIAVLAAAIYFPILRRRVNRAAKLQQQ |
JGI12635J15846_101293463 | 3300001593 | Forest Soil | MTPRWRVWLLVGLALAVIAAVIYFPILRRRVQRAARL |
JGI12635J15846_102673352 | 3300001593 | Forest Soil | VTPHWKFRLIGGLIIVVIAAAIYFPILRKRVKRAAKLQQQS |
JGI25617J43924_100841862 | 3300002914 | Grasslands Soil | MLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQARRELA |
JGI25387J43893_10298162 | 3300002915 | Grasslands Soil | VTPRWKSWLIGGLVIAVLGAAVYFPVLRRRVKRAARLQQQSEEQA |
Ga0066672_106217052 | 3300005167 | Soil | VTPRWKFWLIGGLVTAVLAAAIYFPILRRRVKRAARLQQQSEEQ |
Ga0066680_108620282 | 3300005174 | Soil | VTPRWKFLLIGGMAFMALAAAIVFPILRSRMKRAAKLQQQSE |
Ga0066671_104976462 | 3300005184 | Soil | VTPRWKSWLIGGLVIAVLGAAVYFPVLRRRVKRAARLQQQSEEQARRE |
Ga0066676_107998521 | 3300005186 | Soil | VTPSWKYWLIGGLVVAVLAAAIYFPILRRRVKRAARLQQQSEEQARREL |
Ga0070732_110194742 | 3300005542 | Surface Soil | MNPRWRNRILGGLAIAVVGAAIYFPILKRRVQRAARLQQQS |
Ga0066661_108561491 | 3300005554 | Soil | VTSSWKFWLIGGLVVAVLGAALYFPILRRRVKRAARLQQQSEEQARRELTQPI |
Ga0066692_106923751 | 3300005555 | Soil | VTPHWKFWVIGGLLVAVLAAAIYFPILRRRVKRAARLQQQSEEQAR |
Ga0066705_107996111 | 3300005569 | Soil | VTPSWKYWLIGGLVVAVLAAAIYFPILRRRVKRAAKLQQQSEEQARRELTQPIPINPSDP |
Ga0066691_100087864 | 3300005586 | Soil | MTPSWRFWLIGGLVVAVLAAAIYFPILRRRVKRAARLQQQ |
Ga0070766_110370971 | 3300005921 | Soil | VTPRWRVRLIGGLIIAVVAAAIYFPILRRRVKRAARL |
Ga0075015_1007669532 | 3300006102 | Watersheds | MTPRWRTWAIGALVLAVVAAAIYFPILRRRVKRAARQRQQSEEQAR |
Ga0099793_102809462 | 3300007258 | Vadose Zone Soil | VTPRWKFRLIGGLVIAVLAAAIYFPILRRRVKHAARLQQQSEEQARRELTQPIVINPGDP |
Ga0099793_104834241 | 3300007258 | Vadose Zone Soil | VTPRWKSWLIGGLVIAVLGAAIYFPVLRRRVKRAARLLQQSEEQARRELTQPMVINSGDP |
Ga0099794_100302983 | 3300007265 | Vadose Zone Soil | VTPRWKFLLIGGLVFIVLAGAIYFPILRRRVKRAARLQQQSEEQARREL |
Ga0099795_104309332 | 3300007788 | Vadose Zone Soil | VTPRWKYWLIGGLVIAVIAAAIYFPILRRRVKRAARLQQHSEEQARRELT |
Ga0066710_1010429022 | 3300009012 | Grasslands Soil | MTPRWKFSLIGGLVITVLAAAIYFPILRRRVKRAAKLQQQS |
Ga0099830_100864323 | 3300009088 | Vadose Zone Soil | VTPTWKFWVIGGLVIAVLAAAIYFPILRRRVKRAARLQQQSEEQARRE |
Ga0099830_100955021 | 3300009088 | Vadose Zone Soil | VTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQA |
Ga0099828_100703543 | 3300009089 | Vadose Zone Soil | VTPRWKFWLIGGLVVAVLAAAIYFPILRRRVKRAARLQQQSEEQARRELTQPIAI |
Ga0099828_100873181 | 3300009089 | Vadose Zone Soil | VRPRWKFWLIGGLVTAVVAAAIYFPILRRRVKRAARLQQQSEEQARRELTQP |
Ga0099828_113119442 | 3300009089 | Vadose Zone Soil | VTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAARLQQQSEEQ |
Ga0099827_109785611 | 3300009090 | Vadose Zone Soil | MTQRWKVFVIAGLAMAVLAAAIYFPILRRRVMRAAK |
Ga0066709_1033577842 | 3300009137 | Grasslands Soil | VTPRWKFMLASGFIFALLAAAIYFPILRGRVKRAAKLQQQSEEQARRELTQPIAINPGD |
Ga0126374_118980721 | 3300009792 | Tropical Forest Soil | MTERWKVWLITGLTAAVIAAAIYAPILRRRMKRAARMQQQSEEQARRELTQPVPINP |
Ga0134088_106177081 | 3300010304 | Grasslands Soil | MTPRWKVFVIAGLAMAVLAAAIYFPILRRRVRRAAKLQQQSEEQAR |
Ga0134109_100329863 | 3300010320 | Grasslands Soil | VTPRWKSWLIGGLVIAVLGAAVYFPVLRRRVKRAARLQQQSEEQARRELTQP |
Ga0134063_101157791 | 3300010335 | Grasslands Soil | VTPRWKSWLIGGLVIAVLGAAIYFPVLRRRVKRAARLQLQSEEQARRELTQPMVIN |
Ga0134071_102377872 | 3300010336 | Grasslands Soil | MTQRWKVFVIAGLAMAVLAAAIYFPILRRRVRRAAKLQQ |
Ga0134062_100783373 | 3300010337 | Grasslands Soil | MTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAAKLQQQSEEQARRELTQPIAINPGDP |
Ga0126370_107181422 | 3300010358 | Tropical Forest Soil | MTERWKVWLITGLTAAVIAAAIYAPVLRRRMKRAARMQQQSEEQARRELTQPVPINP |
Ga0126376_107115171 | 3300010359 | Tropical Forest Soil | MTERWKVWLITGLAAAVIVAAIYAPILRKRLKRAAGVQQQSEEQAR |
Ga0136449_1001161064 | 3300010379 | Peatlands Soil | VTPRWRTRLIGALIIAVIAAAIYFPILRRRVKRAARLQQQS |
Ga0137392_102552701 | 3300011269 | Vadose Zone Soil | VTPRWKFLLAGGLIFAVLAAAIYFPILRRRVKRAAKLQQQ |
Ga0137392_111788892 | 3300011269 | Vadose Zone Soil | MTPRWKFLLIGGMVFMVLAAAIVFPILRSRMKRAAKLQQQS |
Ga0137393_108868181 | 3300011271 | Vadose Zone Soil | VTPRWKFLFVSGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQARRELAQPITINPGDP |
Ga0137393_109228872 | 3300011271 | Vadose Zone Soil | MTPRWKFLLIGGMVFMVLAAAIVFPILRSRMKRAAKLQQQ |
Ga0137393_109257641 | 3300011271 | Vadose Zone Soil | VTSRWKIILIGGLVFIVLAAAIYFPILRRRVKRAARLQQQSEEQARRELTQPIAVNPGDP |
Ga0137389_115744301 | 3300012096 | Vadose Zone Soil | VTPRWKFMVIAGLIFVVLGAAIYFPILRRRVKRAARLQQQSEEQARRE |
Ga0137388_109598131 | 3300012189 | Vadose Zone Soil | VTPRWKSMVIAGLILVVLGAAIYFPILRRRVKRAARLQQQSEE |
Ga0137388_109674311 | 3300012189 | Vadose Zone Soil | VTSRWKIILIGGLVFLVLAAAIYFPILRRRVKRAARLQQQSEEQARRELTQPIAINPGDL |
Ga0137363_102382803 | 3300012202 | Vadose Zone Soil | VTPRWKFLLIGGMVFMVLAAAIVFPILRSRMKRAAKLQQQSEEQARREL |
Ga0137363_107851642 | 3300012202 | Vadose Zone Soil | VTPRWKFLVIAGLIFVVLGAAIYFPILRRRVRRAARLQQ |
Ga0137399_110866482 | 3300012203 | Vadose Zone Soil | MTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAAKLQQQSEEQARR |
Ga0137362_110111761 | 3300012205 | Vadose Zone Soil | MTPRWKFLLIGGMVFMVLAAAIVFPILRSRMKRAAKLQQQSEEQARRELTQPI |
Ga0137362_113141931 | 3300012205 | Vadose Zone Soil | VTPRWKFLLAGGLIFAVLAAAIYFPILRRRVKRAAKLQQ |
Ga0137378_113646101 | 3300012210 | Vadose Zone Soil | MTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAA |
Ga0137377_101691013 | 3300012211 | Vadose Zone Soil | VTPRWKSWLIGGLVIAVLGAAVYFPVLRRRVKRAARLQQQSEEQARRELTQPMVINPGDP |
Ga0137387_101096623 | 3300012349 | Vadose Zone Soil | VTPRWKFLLIGGMVFMLLAAAIIFPILRGRMKRAARLQQQSEE |
Ga0137371_103700551 | 3300012356 | Vadose Zone Soil | MTPRWRVFVIAGLAMAVLAAAIYVPILRRRVRRAARLQQQSEV |
Ga0137360_104429753 | 3300012361 | Vadose Zone Soil | VTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSE |
Ga0137360_106184442 | 3300012361 | Vadose Zone Soil | MTPRWKFLLIGGMVFMVLAAAIVFPILRSRMKRAAKLQQQSEEQARRELTQPIAINPGDP |
Ga0137390_111350662 | 3300012363 | Vadose Zone Soil | MTPRWKVFVIAGLAMAVLAAAIYFPILRRRVRRAARLQQQSEV |
Ga0137398_100826173 | 3300012683 | Vadose Zone Soil | VTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKL |
Ga0137398_101081391 | 3300012683 | Vadose Zone Soil | VTPRWKFMLASGFIFALLAAAIYFPILRKRVKRAAKLQQQSEEQARRELAQPITINPG |
Ga0137398_101083883 | 3300012683 | Vadose Zone Soil | VTTRWKFLLIGGLVLIVLAAAIYFPILRRRVKRAARLQQQSEEQARRELAQPI |
Ga0137395_109986411 | 3300012917 | Vadose Zone Soil | VTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQARRELAQPIT |
Ga0137396_107799822 | 3300012918 | Vadose Zone Soil | VTPSWKFWLIGGLVVAVLAAAIYFPILRRRVKRAAKLQQQSEEQARRELT |
Ga0137359_103369453 | 3300012923 | Vadose Zone Soil | VTPRWKFLVIAGLIFVVVGAAIYFPILRRRVRRAARQQQQSEEQ |
Ga0137419_102534703 | 3300012925 | Vadose Zone Soil | MLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQARRELAQPITINPGD |
Ga0137419_105267971 | 3300012925 | Vadose Zone Soil | VTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQARRELAQPITINPGD |
Ga0137407_120657041 | 3300012930 | Vadose Zone Soil | VTPRWKFMVIAGLIFVVLGAAIYFPILRKRVKRAARLQQQSEEQARR |
Ga0137410_111591192 | 3300012944 | Vadose Zone Soil | VTPRWKFLLIGGLVFIVLAGAIYFPILRRRVKRAARLQQQSEEQARRELTQP |
Ga0134081_101360853 | 3300014150 | Grasslands Soil | VTPRWKFWLIGGLLIAVLAAAIYFPILRRRVKRAAKLQQQSE |
Ga0137420_12718943 | 3300015054 | Vadose Zone Soil | VTSRWKFRLIGGLVIAVLAAAIYFPILRRRVKRAARLQ |
Ga0137418_103206483 | 3300015241 | Vadose Zone Soil | MLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEE |
Ga0137418_112735532 | 3300015241 | Vadose Zone Soil | VTPRWKFLLIGGLVFIVLAGAIYFPILRRRVKRAARLQQQSEEQARR |
Ga0137409_103798403 | 3300015245 | Vadose Zone Soil | MVIAGLIFVVLGAAIYFPILRRRVKRAARLQQQSE |
Ga0187803_100246583 | 3300017934 | Freshwater Sediment | MTPRWRVRLLAGLALAVIVAGIYFPILRRRVQRAARLQQQSEEQARRELTLTVAGNN |
Ga0179592_100738121 | 3300020199 | Vadose Zone Soil | VTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQARRELAQPITINPGDP |
Ga0210403_107412372 | 3300020580 | Soil | MTARWKILLIGGLVIAVVAAAIYFPILRRRVKLAAKLQQQSEEQARRELAQPIAINPG |
Ga0210395_110536551 | 3300020582 | Soil | MTARWKIVLIGGLVVAVVAAAIYFPILRRRVKLAAKLQQQS |
Ga0179596_105662741 | 3300021086 | Vadose Zone Soil | VTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQARRE |
Ga0210400_100279081 | 3300021170 | Soil | MTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAAKLQQQSE |
Ga0210408_111015132 | 3300021178 | Soil | VTPRWKFLLAGGLVFILLAALIFVPILRRRMKRAS |
Ga0210394_106323692 | 3300021420 | Soil | MTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAAKLQQQSEEQARRELTQPI |
Ga0210409_117085102 | 3300021559 | Soil | VTPHWKFWVIGGLVVAVLAAAIYFPILRRRVKRAARLQQQSEEQARRELAQPIAINPGDP |
Ga0137417_11943381 | 3300024330 | Vadose Zone Soil | VTSRWKFRLIGGLVIAVLAAAIYFPILRRRVKHAARLQQQSEEQARRELTQPIVRSIRAI |
Ga0209236_11109593 | 3300026298 | Grasslands Soil | MVIAGLIFVVLGAAIYFPILRRRVKRAARLQQQSEE |
Ga0209240_10659423 | 3300026304 | Grasslands Soil | VTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQAR |
Ga0209240_11367492 | 3300026304 | Grasslands Soil | VTPRWKFWLIGSLVLAVLAAAIYFPILRRRVKRAARLQQQSEEQARRELTQSI |
Ga0209761_10944133 | 3300026313 | Grasslands Soil | VKPRWKFLLAGGLIFVVLAAAIYFPILRRRVKRAAKLQQQSEEQ |
Ga0209131_12332232 | 3300026320 | Grasslands Soil | VTPRWKFLVIAGLIFVVLGAAIYFPILRRRVRRAARL |
Ga0209158_11394342 | 3300026333 | Soil | MTPSWRFWLIGGLVVAVLAAAIYFPILRRRVKRAARLQQQSEEQARR |
Ga0209161_101987171 | 3300026548 | Soil | VTPRWKSWLIGGLVIAVLGAAIYFPVLRRRVKRAARLQQQSEEQARRELTQP |
Ga0209648_100588936 | 3300026551 | Grasslands Soil | VTPRWKFWLIGSLVLAVLAAAIYFPILRRRVKRAARLQQQ |
Ga0209648_103100372 | 3300026551 | Grasslands Soil | VTPRWKFRLIGGLVIAVLAAAIYFPILRRRVKRAARLQQQSEEQARRELT |
Ga0209220_10154011 | 3300027587 | Forest Soil | MTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAAKLQQ |
Ga0209076_10985392 | 3300027643 | Vadose Zone Soil | MTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAAKLQQQSEEQARRELTQ |
Ga0209388_10614271 | 3300027655 | Vadose Zone Soil | VTPRWKFWVITGLIFAVVGAAIYFPILRRRVKRAARLQQQSE |
Ga0209588_12449271 | 3300027671 | Vadose Zone Soil | VTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQARRELA |
Ga0209180_106984051 | 3300027846 | Vadose Zone Soil | VTPRWKFWLIGGLVVAVLAAAIYFPILRRRVKRAAKL |
Ga0209283_101415864 | 3300027875 | Vadose Zone Soil | VTPRWKFLLAGGLIFVVLAAAIYFPILRRRVKRTAKLQQQSEEQARRELTQAVVINPGDP |
Ga0209283_109020661 | 3300027875 | Vadose Zone Soil | VTPRWKFSLIGGLVIAVIAAAIYFPILRRRVKRAARLQQQSEEQARRELTQPIA |
Ga0209526_100088251 | 3300028047 | Forest Soil | MTPRWKFWVITGLVLAVVVAAIYWPILRRRVKRAAQLQQQSEEQARRELTQPIAGNP |
Ga0170818_1036843622 | 3300031474 | Forest Soil | VTPRWRFLFAGGLVFILLVALIFVPILRRRMKRAAKLQQQSAEQARRELTQ |
Ga0307468_1009989872 | 3300031740 | Hardwood Forest Soil | VTPRWKFLVIAGLIFVVLGAAVYFPILRRRVKRAARLQQQSEEQARRELAQPIA |
Ga0307477_101825531 | 3300031753 | Hardwood Forest Soil | MTPRLRTWLFGSLFVAVIAGLIYFPILRRRMERAAKLQQQSEEQARRELTQSVPTNP |
Ga0307475_115604242 | 3300031754 | Hardwood Forest Soil | VTPRWRIWAIGGLIVAVVAAAIYFPILRRRVRRAARQQQ |
Ga0307478_105329891 | 3300031823 | Hardwood Forest Soil | VTPRWKFLLVGGLALVVLAAAIYFPILRRRVKRAAKLQQQSEEQ |
Ga0307478_112530811 | 3300031823 | Hardwood Forest Soil | VTLRWKFLLVGGLIFIVLAAAIYFPILRRRVKRAAKLQQQSEEQARRELT |
Ga0307479_114645022 | 3300031962 | Hardwood Forest Soil | MTPRLRTWLFGSLFVAVIAGLIYFPILRRRMERAAKLQQQSEEQ |
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