NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F091408

Metagenome Family F091408

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091408
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 47 residues
Representative Sequence VTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAARLQQQSEEQ
Number of Associated Samples 86
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 97.20 %
% of genes near scaffold ends (potentially truncated) 99.07 %
% of genes from short scaffolds (< 2000 bps) 86.92 %
Associated GOLD sequencing projects 78
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(49.533 % of family members)
Environment Ontology (ENVO) Unclassified
(42.991 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(49.533 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60
1JGI12636J13339_10071741
2JGI12635J15846_100442881
3JGI12635J15846_101293463
4JGI12635J15846_102673352
5JGI25617J43924_100841862
6JGI25387J43893_10298162
7Ga0066672_106217052
8Ga0066680_108620282
9Ga0066671_104976462
10Ga0066676_107998521
11Ga0070732_110194742
12Ga0066661_108561491
13Ga0066692_106923751
14Ga0066705_107996111
15Ga0066691_100087864
16Ga0070766_110370971
17Ga0075015_1007669532
18Ga0099793_102809462
19Ga0099793_104834241
20Ga0099794_100302983
21Ga0099795_104309332
22Ga0066710_1010429022
23Ga0099830_100864323
24Ga0099830_100955021
25Ga0099828_100703543
26Ga0099828_100873181
27Ga0099828_113119442
28Ga0099827_109785611
29Ga0066709_1033577842
30Ga0126374_118980721
31Ga0134088_106177081
32Ga0134109_100329863
33Ga0134063_101157791
34Ga0134071_102377872
35Ga0134062_100783373
36Ga0126370_107181422
37Ga0126376_107115171
38Ga0136449_1001161064
39Ga0137392_102552701
40Ga0137392_111788892
41Ga0137393_108868181
42Ga0137393_109228872
43Ga0137393_109257641
44Ga0137389_115744301
45Ga0137388_109598131
46Ga0137388_109674311
47Ga0137363_102382803
48Ga0137363_107851642
49Ga0137399_110866482
50Ga0137362_110111761
51Ga0137362_113141931
52Ga0137378_113646101
53Ga0137377_101691013
54Ga0137387_101096623
55Ga0137371_103700551
56Ga0137360_104429753
57Ga0137360_106184442
58Ga0137390_111350662
59Ga0137398_100826173
60Ga0137398_101081391
61Ga0137398_101083883
62Ga0137395_109986411
63Ga0137396_107799822
64Ga0137359_103369453
65Ga0137419_102534703
66Ga0137419_105267971
67Ga0137407_120657041
68Ga0137410_111591192
69Ga0134081_101360853
70Ga0137420_12718943
71Ga0137418_103206483
72Ga0137418_112735532
73Ga0137409_103798403
74Ga0187803_100246583
75Ga0179592_100738121
76Ga0210403_107412372
77Ga0210395_110536551
78Ga0179596_105662741
79Ga0210400_100279081
80Ga0210408_111015132
81Ga0210394_106323692
82Ga0210409_117085102
83Ga0137417_11943381
84Ga0209236_11109593
85Ga0209240_10659423
86Ga0209240_11367492
87Ga0209761_10944133
88Ga0209131_12332232
89Ga0209158_11394342
90Ga0209161_101987171
91Ga0209648_100588936
92Ga0209648_103100372
93Ga0209220_10154011
94Ga0209076_10985392
95Ga0209388_10614271
96Ga0209588_12449271
97Ga0209180_106984051
98Ga0209283_101415864
99Ga0209283_109020661
100Ga0209526_100088251
101Ga0170818_1036843622
102Ga0307468_1009989872
103Ga0307477_101825531
104Ga0307475_115604242
105Ga0307478_105329891
106Ga0307478_112530811
107Ga0307479_114645022
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 56.94%    β-sheet: 0.00%    Coil/Unstructured: 43.06%
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Variant

510152025303540VTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAARLQQQSEEQExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Sediment
Watersheds
Vadose Zone Soil
Tropical Forest Soil
Grasslands Soil
Surface Soil
Peatlands Soil
Soil
Grasslands Soil
Soil
Forest Soil
Hardwood Forest Soil
Forest Soil
Soil
49.5%2.8%5.6%9.3%10.3%5.6%5.6%5.6%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12636J13339_100717413300001154Forest SoilMTPRWRVWLLVGLALAVIAAVIYFPILRRRVQRAARLQQQS
JGI12635J15846_1004428813300001593Forest SoilMTPRWKFWLIGGLIIAVLAAAIYFPILRRRVNRAAKLQQQ
JGI12635J15846_1012934633300001593Forest SoilMTPRWRVWLLVGLALAVIAAVIYFPILRRRVQRAARL
JGI12635J15846_1026733523300001593Forest SoilVTPHWKFRLIGGLIIVVIAAAIYFPILRKRVKRAAKLQQQS
JGI25617J43924_1008418623300002914Grasslands SoilMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQARRELA
JGI25387J43893_102981623300002915Grasslands SoilVTPRWKSWLIGGLVIAVLGAAVYFPVLRRRVKRAARLQQQSEEQA
Ga0066672_1062170523300005167SoilVTPRWKFWLIGGLVTAVLAAAIYFPILRRRVKRAARLQQQSEEQ
Ga0066680_1086202823300005174SoilVTPRWKFLLIGGMAFMALAAAIVFPILRSRMKRAAKLQQQSE
Ga0066671_1049764623300005184SoilVTPRWKSWLIGGLVIAVLGAAVYFPVLRRRVKRAARLQQQSEEQARRE
Ga0066676_1079985213300005186SoilVTPSWKYWLIGGLVVAVLAAAIYFPILRRRVKRAARLQQQSEEQARREL
Ga0070732_1101947423300005542Surface SoilMNPRWRNRILGGLAIAVVGAAIYFPILKRRVQRAARLQQQS
Ga0066661_1085614913300005554SoilVTSSWKFWLIGGLVVAVLGAALYFPILRRRVKRAARLQQQSEEQARRELTQPI
Ga0066692_1069237513300005555SoilVTPHWKFWVIGGLLVAVLAAAIYFPILRRRVKRAARLQQQSEEQAR
Ga0066705_1079961113300005569SoilVTPSWKYWLIGGLVVAVLAAAIYFPILRRRVKRAAKLQQQSEEQARRELTQPIPINPSDP
Ga0066691_1000878643300005586SoilMTPSWRFWLIGGLVVAVLAAAIYFPILRRRVKRAARLQQQ
Ga0070766_1103709713300005921SoilVTPRWRVRLIGGLIIAVVAAAIYFPILRRRVKRAARL
Ga0075015_10076695323300006102WatershedsMTPRWRTWAIGALVLAVVAAAIYFPILRRRVKRAARQRQQSEEQAR
Ga0099793_1028094623300007258Vadose Zone SoilVTPRWKFRLIGGLVIAVLAAAIYFPILRRRVKHAARLQQQSEEQARRELTQPIVINPGDP
Ga0099793_1048342413300007258Vadose Zone SoilVTPRWKSWLIGGLVIAVLGAAIYFPVLRRRVKRAARLLQQSEEQARRELTQPMVINSGDP
Ga0099794_1003029833300007265Vadose Zone SoilVTPRWKFLLIGGLVFIVLAGAIYFPILRRRVKRAARLQQQSEEQARREL
Ga0099795_1043093323300007788Vadose Zone SoilVTPRWKYWLIGGLVIAVIAAAIYFPILRRRVKRAARLQQHSEEQARRELT
Ga0066710_10104290223300009012Grasslands SoilMTPRWKFSLIGGLVITVLAAAIYFPILRRRVKRAAKLQQQS
Ga0099830_1008643233300009088Vadose Zone SoilVTPTWKFWVIGGLVIAVLAAAIYFPILRRRVKRAARLQQQSEEQARRE
Ga0099830_1009550213300009088Vadose Zone SoilVTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQA
Ga0099828_1007035433300009089Vadose Zone SoilVTPRWKFWLIGGLVVAVLAAAIYFPILRRRVKRAARLQQQSEEQARRELTQPIAI
Ga0099828_1008731813300009089Vadose Zone SoilVRPRWKFWLIGGLVTAVVAAAIYFPILRRRVKRAARLQQQSEEQARRELTQP
Ga0099828_1131194423300009089Vadose Zone SoilVTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAARLQQQSEEQ
Ga0099827_1097856113300009090Vadose Zone SoilMTQRWKVFVIAGLAMAVLAAAIYFPILRRRVMRAAK
Ga0066709_10335778423300009137Grasslands SoilVTPRWKFMLASGFIFALLAAAIYFPILRGRVKRAAKLQQQSEEQARRELTQPIAINPGD
Ga0126374_1189807213300009792Tropical Forest SoilMTERWKVWLITGLTAAVIAAAIYAPILRRRMKRAARMQQQSEEQARRELTQPVPINP
Ga0134088_1061770813300010304Grasslands SoilMTPRWKVFVIAGLAMAVLAAAIYFPILRRRVRRAAKLQQQSEEQAR
Ga0134109_1003298633300010320Grasslands SoilVTPRWKSWLIGGLVIAVLGAAVYFPVLRRRVKRAARLQQQSEEQARRELTQP
Ga0134063_1011577913300010335Grasslands SoilVTPRWKSWLIGGLVIAVLGAAIYFPVLRRRVKRAARLQLQSEEQARRELTQPMVIN
Ga0134071_1023778723300010336Grasslands SoilMTQRWKVFVIAGLAMAVLAAAIYFPILRRRVRRAAKLQQ
Ga0134062_1007833733300010337Grasslands SoilMTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAAKLQQQSEEQARRELTQPIAINPGDP
Ga0126370_1071814223300010358Tropical Forest SoilMTERWKVWLITGLTAAVIAAAIYAPVLRRRMKRAARMQQQSEEQARRELTQPVPINP
Ga0126376_1071151713300010359Tropical Forest SoilMTERWKVWLITGLAAAVIVAAIYAPILRKRLKRAAGVQQQSEEQAR
Ga0136449_10011610643300010379Peatlands SoilVTPRWRTRLIGALIIAVIAAAIYFPILRRRVKRAARLQQQS
Ga0137392_1025527013300011269Vadose Zone SoilVTPRWKFLLAGGLIFAVLAAAIYFPILRRRVKRAAKLQQQ
Ga0137392_1117888923300011269Vadose Zone SoilMTPRWKFLLIGGMVFMVLAAAIVFPILRSRMKRAAKLQQQS
Ga0137393_1088681813300011271Vadose Zone SoilVTPRWKFLFVSGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQARRELAQPITINPGDP
Ga0137393_1092288723300011271Vadose Zone SoilMTPRWKFLLIGGMVFMVLAAAIVFPILRSRMKRAAKLQQQ
Ga0137393_1092576413300011271Vadose Zone SoilVTSRWKIILIGGLVFIVLAAAIYFPILRRRVKRAARLQQQSEEQARRELTQPIAVNPGDP
Ga0137389_1157443013300012096Vadose Zone SoilVTPRWKFMVIAGLIFVVLGAAIYFPILRRRVKRAARLQQQSEEQARRE
Ga0137388_1095981313300012189Vadose Zone SoilVTPRWKSMVIAGLILVVLGAAIYFPILRRRVKRAARLQQQSEE
Ga0137388_1096743113300012189Vadose Zone SoilVTSRWKIILIGGLVFLVLAAAIYFPILRRRVKRAARLQQQSEEQARRELTQPIAINPGDL
Ga0137363_1023828033300012202Vadose Zone SoilVTPRWKFLLIGGMVFMVLAAAIVFPILRSRMKRAAKLQQQSEEQARREL
Ga0137363_1078516423300012202Vadose Zone SoilVTPRWKFLVIAGLIFVVLGAAIYFPILRRRVRRAARLQQ
Ga0137399_1108664823300012203Vadose Zone SoilMTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAAKLQQQSEEQARR
Ga0137362_1101117613300012205Vadose Zone SoilMTPRWKFLLIGGMVFMVLAAAIVFPILRSRMKRAAKLQQQSEEQARRELTQPI
Ga0137362_1131419313300012205Vadose Zone SoilVTPRWKFLLAGGLIFAVLAAAIYFPILRRRVKRAAKLQQ
Ga0137378_1136461013300012210Vadose Zone SoilMTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAA
Ga0137377_1016910133300012211Vadose Zone SoilVTPRWKSWLIGGLVIAVLGAAVYFPVLRRRVKRAARLQQQSEEQARRELTQPMVINPGDP
Ga0137387_1010966233300012349Vadose Zone SoilVTPRWKFLLIGGMVFMLLAAAIIFPILRGRMKRAARLQQQSEE
Ga0137371_1037005513300012356Vadose Zone SoilMTPRWRVFVIAGLAMAVLAAAIYVPILRRRVRRAARLQQQSEV
Ga0137360_1044297533300012361Vadose Zone SoilVTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSE
Ga0137360_1061844423300012361Vadose Zone SoilMTPRWKFLLIGGMVFMVLAAAIVFPILRSRMKRAAKLQQQSEEQARRELTQPIAINPGDP
Ga0137390_1113506623300012363Vadose Zone SoilMTPRWKVFVIAGLAMAVLAAAIYFPILRRRVRRAARLQQQSEV
Ga0137398_1008261733300012683Vadose Zone SoilVTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKL
Ga0137398_1010813913300012683Vadose Zone SoilVTPRWKFMLASGFIFALLAAAIYFPILRKRVKRAAKLQQQSEEQARRELAQPITINPG
Ga0137398_1010838833300012683Vadose Zone SoilVTTRWKFLLIGGLVLIVLAAAIYFPILRRRVKRAARLQQQSEEQARRELAQPI
Ga0137395_1099864113300012917Vadose Zone SoilVTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQARRELAQPIT
Ga0137396_1077998223300012918Vadose Zone SoilVTPSWKFWLIGGLVVAVLAAAIYFPILRRRVKRAAKLQQQSEEQARRELT
Ga0137359_1033694533300012923Vadose Zone SoilVTPRWKFLVIAGLIFVVVGAAIYFPILRRRVRRAARQQQQSEEQ
Ga0137419_1025347033300012925Vadose Zone SoilMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQARRELAQPITINPGD
Ga0137419_1052679713300012925Vadose Zone SoilVTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQARRELAQPITINPGD
Ga0137407_1206570413300012930Vadose Zone SoilVTPRWKFMVIAGLIFVVLGAAIYFPILRKRVKRAARLQQQSEEQARR
Ga0137410_1115911923300012944Vadose Zone SoilVTPRWKFLLIGGLVFIVLAGAIYFPILRRRVKRAARLQQQSEEQARRELTQP
Ga0134081_1013608533300014150Grasslands SoilVTPRWKFWLIGGLLIAVLAAAIYFPILRRRVKRAAKLQQQSE
Ga0137420_127189433300015054Vadose Zone SoilVTSRWKFRLIGGLVIAVLAAAIYFPILRRRVKRAARLQ
Ga0137418_1032064833300015241Vadose Zone SoilMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEE
Ga0137418_1127355323300015241Vadose Zone SoilVTPRWKFLLIGGLVFIVLAGAIYFPILRRRVKRAARLQQQSEEQARR
Ga0137409_1037984033300015245Vadose Zone SoilMVIAGLIFVVLGAAIYFPILRRRVKRAARLQQQSE
Ga0187803_1002465833300017934Freshwater SedimentMTPRWRVRLLAGLALAVIVAGIYFPILRRRVQRAARLQQQSEEQARRELTLTVAGNN
Ga0179592_1007381213300020199Vadose Zone SoilVTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQARRELAQPITINPGDP
Ga0210403_1074123723300020580SoilMTARWKILLIGGLVIAVVAAAIYFPILRRRVKLAAKLQQQSEEQARRELAQPIAINPG
Ga0210395_1105365513300020582SoilMTARWKIVLIGGLVVAVVAAAIYFPILRRRVKLAAKLQQQS
Ga0179596_1056627413300021086Vadose Zone SoilVTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQARRE
Ga0210400_1002790813300021170SoilMTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAAKLQQQSE
Ga0210408_1110151323300021178SoilVTPRWKFLLAGGLVFILLAALIFVPILRRRMKRAS
Ga0210394_1063236923300021420SoilMTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAAKLQQQSEEQARRELTQPI
Ga0210409_1170851023300021559SoilVTPHWKFWVIGGLVVAVLAAAIYFPILRRRVKRAARLQQQSEEQARRELAQPIAINPGDP
Ga0137417_119433813300024330Vadose Zone SoilVTSRWKFRLIGGLVIAVLAAAIYFPILRRRVKHAARLQQQSEEQARRELTQPIVRSIRAI
Ga0209236_111095933300026298Grasslands SoilMVIAGLIFVVLGAAIYFPILRRRVKRAARLQQQSEE
Ga0209240_106594233300026304Grasslands SoilVTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQAR
Ga0209240_113674923300026304Grasslands SoilVTPRWKFWLIGSLVLAVLAAAIYFPILRRRVKRAARLQQQSEEQARRELTQSI
Ga0209761_109441333300026313Grasslands SoilVKPRWKFLLAGGLIFVVLAAAIYFPILRRRVKRAAKLQQQSEEQ
Ga0209131_123322323300026320Grasslands SoilVTPRWKFLVIAGLIFVVLGAAIYFPILRRRVRRAARL
Ga0209158_113943423300026333SoilMTPSWRFWLIGGLVVAVLAAAIYFPILRRRVKRAARLQQQSEEQARR
Ga0209161_1019871713300026548SoilVTPRWKSWLIGGLVIAVLGAAIYFPVLRRRVKRAARLQQQSEEQARRELTQP
Ga0209648_1005889363300026551Grasslands SoilVTPRWKFWLIGSLVLAVLAAAIYFPILRRRVKRAARLQQQ
Ga0209648_1031003723300026551Grasslands SoilVTPRWKFRLIGGLVIAVLAAAIYFPILRRRVKRAARLQQQSEEQARRELT
Ga0209220_101540113300027587Forest SoilMTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAAKLQQ
Ga0209076_109853923300027643Vadose Zone SoilMTPRWKFWLIGGLVIAVLAAAIYFPILRRRVKRAAKLQQQSEEQARRELTQ
Ga0209388_106142713300027655Vadose Zone SoilVTPRWKFWVITGLIFAVVGAAIYFPILRRRVKRAARLQQQSE
Ga0209588_124492713300027671Vadose Zone SoilVTPRWKFMLASGFIFALLAAAIYFPILRRRVKRAAKLQQQSEEQARRELA
Ga0209180_1069840513300027846Vadose Zone SoilVTPRWKFWLIGGLVVAVLAAAIYFPILRRRVKRAAKL
Ga0209283_1014158643300027875Vadose Zone SoilVTPRWKFLLAGGLIFVVLAAAIYFPILRRRVKRTAKLQQQSEEQARRELTQAVVINPGDP
Ga0209283_1090206613300027875Vadose Zone SoilVTPRWKFSLIGGLVIAVIAAAIYFPILRRRVKRAARLQQQSEEQARRELTQPIA
Ga0209526_1000882513300028047Forest SoilMTPRWKFWVITGLVLAVVVAAIYWPILRRRVKRAAQLQQQSEEQARRELTQPIAGNP
Ga0170818_10368436223300031474Forest SoilVTPRWRFLFAGGLVFILLVALIFVPILRRRMKRAAKLQQQSAEQARRELTQ
Ga0307468_10099898723300031740Hardwood Forest SoilVTPRWKFLVIAGLIFVVLGAAVYFPILRRRVKRAARLQQQSEEQARRELAQPIA
Ga0307477_1018255313300031753Hardwood Forest SoilMTPRLRTWLFGSLFVAVIAGLIYFPILRRRMERAAKLQQQSEEQARRELTQSVPTNP
Ga0307475_1156042423300031754Hardwood Forest SoilVTPRWRIWAIGGLIVAVVAAAIYFPILRRRVRRAARQQQ
Ga0307478_1053298913300031823Hardwood Forest SoilVTPRWKFLLVGGLALVVLAAAIYFPILRRRVKRAAKLQQQSEEQ
Ga0307478_1125308113300031823Hardwood Forest SoilVTLRWKFLLVGGLIFIVLAAAIYFPILRRRVKRAAKLQQQSEEQARRELT
Ga0307479_1146450223300031962Hardwood Forest SoilMTPRLRTWLFGSLFVAVIAGLIYFPILRRRMERAAKLQQQSEEQ


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