NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F091354

Metagenome / Metatranscriptome Family F091354

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091354
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 62 residues
Representative Sequence MQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Number of Associated Samples 73
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 79.44 %
% of genes near scaffold ends (potentially truncated) 26.17 %
% of genes from short scaffolds (< 2000 bps) 85.05 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (55.140 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake
(20.561 % of family members)
Environment Ontology (ENVO) Unclassified
(63.551 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(74.766 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 59.68%    β-sheet: 1.61%    Coil/Unstructured: 38.71%
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51015202530354045505560MQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDVSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
44.9%55.1%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Freshwater Lake
Freshwater Lentic
Freshwater
Freshwater, Plankton
Anoxic Zone Freshwater
Freshwater Lake
Freshwater
Freshwater, Surface Ice
Freshwater
Freshwater
Estuary Water
Estuarine
Estuary
13.1%2.8%15.9%3.7%20.6%8.4%16.8%12.1%2.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0007787_1001700653300004240Freshwater LakeMQQQDDFNIWLEECRNYGLRVTRDRLIKSLHEFDDFAYQFAMSADSKTMIVLLEREVFNDDV*
Ga0007751_1148703923300004794Freshwater LakeMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV*
Ga0049081_1012069713300005581Freshwater LenticMQQQEDFNIWLEECRNYGLRVTRDRLIKSLEEFNHDFYQFAMSPDSKTMIVLLEREVFNDDI*
Ga0049081_1031235513300005581Freshwater LenticMQQQENFNIWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV*
Ga0049084_1024333613300005585Freshwater LenticMQQEDDFNFWLEECRNYGLRVTRERLIKSLNEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV*
Ga0102917_133413413300007590EstuarineMQQEDDFNFWIDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDAKTMIVLLEREVFNDDV*
Ga0102921_120808713300007603EstuarineMQQEDDFNFWLDERRNYGLRVTRDRLIKSLYEFDDYAYQFAMSPDSKTMIVLLEREVFNDDI*
Ga0105745_104193213300007972Estuary WaterMQQQDDFNFWLDECRNYGLRVTRDRLIQSLHEFDDFAYQFAMSPDSKTMIVLIESEKECEDDDV*
Ga0108970_1051406423300008055EstuaryMQQQDDFNFWLDECRNYGLRVTRDRLIQSLHEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV*
Ga0114341_1014779613300008108Freshwater, PlanktonMQQEDDFNFWLAECRNYGLTVTKERLMRSLSEFNHKSYQFAMSPDAQTMIVLIESDKECEDDDV*
Ga0114354_127077713300008119Freshwater, PlanktonMQQEDDFNFWLDECRNYGLRVTRDRMIKSLYEFDDFTYQFAMSPDSKTMIVLIEREVFNDDV*
Ga0114336_113915833300008261Freshwater, PlanktonMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFVMSPDSKTMIVLLEREVFNDHI*
Ga0114336_127044113300008261Freshwater, PlanktonMQQDFSFYYWLAECRNYGLTVTKDRLIKSINEFNHNSYQFAMSPDAKTMIVLIESDKECEDDDV*
Ga0102864_115412313300009051EstuarineKWLGDLLNTFFKGVTMQQQDDFNFWLDECRNYGLRVTRERLIKSLHEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV*
Ga0114973_1057662623300009068Freshwater LakeMQQEDFNIWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSLDSKTLIILLEREVFNDDV*
Ga0114962_1020289413300009151Freshwater LakeEVPMQQEDDFNFWLDECRNYGLRVTKDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV*
Ga0114963_1002971133300009154Freshwater LakeMQQEDNFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDAKTMIVLIESDKECEHDDV*
Ga0114963_1058448913300009154Freshwater LakeQEDFNIWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSLDSKTLIILLEREVFNDDV*
Ga0114968_1019730823300009155Freshwater LakeMLQEDDFNFWLEECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV*
Ga0114968_1032307233300009155Freshwater LakeMQQEDFNIWLDECRNYGLRVTRDRLIKSLHELDDFAYQFAMSPDSKTMIVLLEMEVFNDDV*
Ga0114977_1023152913300009158Freshwater LakeMQQQDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSLDSKTLIILLEREVFNDDV*
Ga0114966_1028946913300009161Freshwater LakeMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVL
Ga0114969_1054492123300009181Freshwater LakeECRNYGLRVTRDRLIQSLHEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV*
Ga0114971_1062512713300009185Freshwater LakeMQQQEDFNLWLEECRNYGLRVTRERLIKSLEEFNHDSYQFAMSPDSKTMIVLLEREVFNDDV*
Ga0114971_1070488013300009185Freshwater LakeMQQEDDFNFWLDECRNYGLRVTKDRLIKSLYEFDDFAYQFAMSLDSKTMIDLLEREVFNDDV*
Ga0114972_1058098813300009187Freshwater LakeMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLL
Ga0114958_1004991443300009684Freshwater LakeMQQEDFNIWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSLDSKKLIILLEREVFNDDV*
Ga0114960_1046884423300010158Freshwater LakeMQQEDDFNFWLDECRNYGLRVTKDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV*
Ga0136644_1035848443300010334Freshwater LakeMQQEDFNIWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV*
Ga0133913_1040775443300010885Freshwater LakeMQQEDGFNLWLDECRNYGLSVTRERLITSLYEFDDYAYKFAMSPDAKTMIVLLEKGVPNDDI*
Ga0157498_106039913300012666Freshwater, Surface IceMQQQDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFTYQFAISPDSKTMIVL
Ga0138270_126397913300012771Freshwater LakeMQQEDFNIWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTLIILLEREVFNDDV*
Ga0164292_1031979423300013005FreshwaterMQQEDDFNFWLEECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLERGVLNDDV*
Ga0164294_1002350123300013006FreshwaterMQQEEDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDTKTMIVLLEREVLNDDV*
Ga0164294_1010232333300013006FreshwaterMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYLFAMSPDSKTMIVLLEREVFNDDV*
Ga0164294_1017326823300013006FreshwaterMQQDFNFYYWLAECRNYGLTVTKERLIKSLNEFNHNCYQFAMSPDAKTMVVLIESDRECEDDDV*
Ga0164294_1039805113300013006FreshwaterLNTFIWEVPMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV*
Ga0164295_1095232623300013014FreshwaterMLNTFIWEVPMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVLNDDV*
Ga0164295_1097375523300013014FreshwaterMQQEDNFNFWLDECRNYGLRVNRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV*
Ga0136642_102717643300013285FreshwaterMQQDDFNIWLEECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV*
Ga0170791_1355706213300013295FreshwaterEVPMQQEDDFNFWLDECRNYGLRVTKDRLIKSLYEFDDFAYQFAMSLDSKKLIILLEREVFNDDV*
Ga0187844_1012114813300018868FreshwaterMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFTYQFAISPDSKTMIVLLE
Ga0187844_1012632123300018868FreshwaterMQYQEDFNIWLDECRNYGLRVTRDRLIKSLNEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0187844_1017246823300018868FreshwaterMQHEDDFIFWLDECRNYGLRVTRDRMIKSLYEFDDFTYQFAMSPDSKTMIVLIEREVFNDDV
Ga0187843_1034583713300019093FreshwaterMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQLAMSPDSKTMIVLLEREVFNDDV
Ga0211726_1063622013300020161FreshwaterMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0211729_1031848123300020172FreshwaterMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYHFAKSPDSKTMIVLLEREVFNDDV
Ga0211729_1089740123300020172FreshwaterMQQDFKFYYWLAECCNYGLTVTKERLIKSINEFNHNSYQFAMSPDAKTTVVLIESDKECEDDDV
Ga0194047_1026074933300021354Anoxic Zone FreshwaterMQQEDFNIWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDD
Ga0214917_1001536433300022752FreshwaterMLQEDDFYFWLAECRNYGLRVTRDRLIKSLNEFNHNSYQFAMSPDAKTMIVLIKSDKECEDDDV
Ga0214917_1007238023300022752FreshwaterMQQEDDFIFWLDECRNYGLRVTRERLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0214919_1002669923300023184FreshwaterMQQQDDFNFWLEECRNYGLRVTRDRLIKSLHEFDDFAYQFAMSPDSKTMIVLLEREIFNDDI
Ga0214919_1009391623300023184FreshwaterMQQEDFNIWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSLDSKTLIILLEREVFNDD
Ga0214919_1025738133300023184FreshwaterMQQEDDFNFWLEECRNYGLRVTRDRLIKSLHEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0214919_1051624213300023184FreshwaterMQQQYDFNFWLEECRNYGLRVTRYRLIKSLEEFNQDFYQFAMSPDSKTMIVLLEREVFNDDV
Ga0255209_102992023300024280FreshwaterMQQEDDFNFWLDECRDYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0255211_105000723300024311FreshwaterMQQEDDFNFWLDECRDYGLRVTRDRLIKSLNEFNHNSYQFAMSPDSKTMIV
Ga0256318_101987933300024485FreshwaterMQQEDDFIFWLDEFRNYGLTVTKARLIKSLNEFNHNSYQFAMSPDAKTMVVLIESDKECEDDDV
Ga0256317_103268233300024862FreshwaterMQQEDDFNFWLAECRNYGLTVTKDRLIKSINEFNHNSYQFAMSPDSKTMIVLLERELFNDDV
Ga0256317_112104523300024862FreshwaterMQQQDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0255067_106708813300027129FreshwaterMQQQDDFNFWLDECRNYGLRVTRDRLIQSLHEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0255070_102183213300027133FreshwaterTFFKGVTMQQQDDFNFWLDECRNYGLRVTRDRLIQSLHEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0255073_107445623300027135FreshwaterFKGVTMQQQDDFNFWLDECRNYGLRVTRDRLIQSLHEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0255108_110025323300027149FreshwaterMQQNDDFNFWLAECRNYGLKVTRERLMKSLCEFDDFAYQFAMSPDSKTMIVLLEREVINDESC
Ga0255109_107414613300027329FreshwaterMKQEDDFNFWLDECRNYGLRVTRYRLIKSLYEFDDFAYQFAMSPDAKTMIVLLEKEVFNDDV
Ga0255072_105711533300027508FreshwaterLGDLLNTFFKGVTMQQQDDFNFWLDECRNYGLRVTRDRLIQSLHEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0255121_110027113300027598FreshwaterAKYFHLGGVNAAGFKFYYWLLEYRNYGLTVTKKRLIKSLEEFNHNCYQFVISPDSQTMVVLIESDKGCEVDDI
Ga0209033_118519713300027697Freshwater LakeMQQQDDFNIWLEECRNYGLRVTRDRLIKSLHEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0209188_110714623300027708Freshwater LakeMQQEDNFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDAKTMIVLIESDKECEHDDV
Ga0209442_112818833300027732Freshwater LakeMQQDFNFYYWLAECRNYGLTVTKDRLIKSINEFNHNSYQFAMSPDSKTMVVLIESDKECEDDDV
Ga0209355_120805013300027744Freshwater LakeMQQQDDFNFWLDECRNYGLRVTRDRLIQSLHEFDDFAYQFAMSPDSKTMIV
Ga0209355_122089713300027744Freshwater LakeDFNFWIDECRNNGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTVIVLLEREVFNDDV
Ga0209189_100953413300027747Freshwater LakeQQEDFNIWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTLIILLEREVFNDDV
Ga0209444_1018906623300027756Freshwater LakeMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFTYQFAISPDSKTMIVLLESEVFNDDI
Ga0209598_1008101333300027760Freshwater LakeMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTLIILLEREVFNDDV
Ga0209768_1001515233300027772Freshwater LakeMQQQEDFNIWLDECRNYGLRVTRDRLIKSLHEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0209768_1012374733300027772Freshwater LakeMQQDFNFYYWLAECRNYGLTVTKDRLIKSLNEFNHNSYQFAMSPDAKTMVVLIESDKECEDDDV
Ga0209768_1027490313300027772Freshwater LakeMEQQNNFIIWLSDCRNYGLTVTKERLIKSLNTFDHDSYQFAMSPDAKTMIVLIESDKECENDDI
Ga0209768_1042568323300027772Freshwater LakeMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFTYQFAISPDSKTMIV
Ga0209829_1000604143300027777Freshwater LakeMQQEDFNIWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTLIILLEREVFNDD
Ga0209246_1022671723300027785Freshwater LakeMQQEDDFNFWLEECRNYGLRVTRDRLIKSLYEFNDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0209358_1011662633300027804Freshwater LakeMQQQDDFNIWLEECRNYGLRVTRDRLIKSLHEFDDFAYQFAMSADSKTMIVLLEREVFNDDV
Ga0209550_1071576413300027892Freshwater LakeMQQEDDFIFWLDECRNYGLTVTKERLIKSINEFNHNSYQFAMSPDSKTMVVLIESDKECEDDDI
Ga0255256_107692833300028271FreshwaterMQQDFNFYYWLAECSNYGLTVTKDRLIKSINEFNHNSYQFAMSPDAKTMVVLIESNKECEDDDV
Ga0304730_131840323300028394Freshwater LakeMQQEDFNIWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSLDSKTLIILLER
Ga0315907_1038268033300031758FreshwaterMQQDFNFYYWLAECRNYGLTVTKERLIKSINEFNHNSYQFAMSPDAQTMVVLIESDKECEDDDI
Ga0315899_1034302513300031784FreshwaterMQQEDDFNFWLAECRNYGLTVTKERLMRSLSEFNHKSYQFAMSPDAQTMIVLIESDK
Ga0315899_1125837013300031784FreshwaterFWLNECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0315899_1142816113300031784FreshwaterMQQEDDFNFWLDECRNYGLRVTRDRLIKSLNEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0315908_1065478623300031786FreshwaterMQQENDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0315906_1052322313300032050FreshwaterMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDEFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0315905_1000203023300032092FreshwaterMQQQDDFNYWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0315905_1016516053300032092FreshwaterMQQEDDFIFWLDEFRNYGLTVTKERLIKSINEFNHNSYQFAMSPDAKTMVVLIESHKECEDDDV
Ga0315905_1018540423300032092FreshwaterMQQEDDFNFWLDECRNYGLRVARDRLIKSLYEFDDFAYRFEMSPDSKTMIVLLEREVHNDDV
Ga0315905_1028403923300032092FreshwaterMQQLDDFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0315905_1039672913300032092FreshwaterMLNTFIWEVPMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0315905_1042055313300032092FreshwaterLIKINTIIWKVLMQQQDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVLNDDI
Ga0315905_1045312133300032092FreshwaterMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLER
Ga0315905_1051331223300032092FreshwaterMQQEDDFNFYYWLAECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLER
Ga0315905_1052932213300032092FreshwaterMQQQDDFNFWLEECRNYGLRVTRGRLIKSLYEFDDFAYQFAMSPDFKTMIVLLEREVFNDDV
Ga0315905_1055391923300032092FreshwaterMQQEDDFNFWLDECRNYGLRVSRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV
Ga0315905_1077272013300032092FreshwaterMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVLNDDV
Ga0315905_1078093123300032092FreshwaterMQQDFNFYYWLAECRNYGLTATKERLLKTINEFNHNSYQFAMSPDSKTMIVLLEREVFNDDV
Ga0335021_0157254_548_7363300034023FreshwaterMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEKEVFNDDV
Ga0335025_0456166_236_4303300034096FreshwaterMQQEDDFNFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDAQTMVVLIESEKESEDDDV
Ga0335058_0630081_414_5963300034121FreshwaterQQDDSNFWLEECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDGV
Ga0335017_0235487_555_7433300034167FreshwaterMQQEDDFIFWLDECRNYGLRVTRDRLIKSLYEFDDFAYQFAMSPDSKTMIVLLEREVFNDDV


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