NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F091247

Metagenome / Metatranscriptome Family F091247

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091247
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 39 residues
Representative Sequence LVPQVEQLVAEQPPQEELAVLLNFPPLEKAKADIIR
Number of Associated Samples 66
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 33.64 %
% of genes near scaffold ends (potentially truncated) 47.66 %
% of genes from short scaffolds (< 2000 bps) 84.11 %
Associated GOLD sequencing projects 61
AlphaFold2 3D model prediction Yes
3D model pTM-score0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (62.617 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil
(14.953 % of family members)
Environment Ontology (ENVO) Unclassified
(31.776 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(37.383 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60
1Ga0031656_101647401
2Ga0031653_100025952
3Ga0105095_100662663
4Ga0105095_104053082
5Ga0105095_105806921
6Ga0105095_106921912
7Ga0105106_107649051
8Ga0105106_109832322
9Ga0115026_107976232
10Ga0105094_102802542
11Ga0105094_105144502
12Ga0113563_138261032
13Ga0105101_100178731
14Ga0123519_1001768015
15Ga0136851_100502796
16Ga0153915_100136512
17Ga0153915_102693063
18Ga0153915_106422982
19Ga0153915_108691201
20Ga0153915_108848562
21Ga0153915_111698811
22Ga0153915_116154201
23Ga0153915_120541171
24Ga0153915_134469312
25Ga0153916_100447142
26Ga0153916_101951033
27Ga0153916_104175431
28Ga0153916_105781212
29Ga0153916_118741112
30Ga0153916_127824042
31Ga0153916_130001831
32Ga0153914_11746601
33Ga0180007_104571891
34Ga0187775_100520661
35Ga0187786_104714351
36Ga0187776_101724762
37Ga0187776_107421501
38Ga0187781_104826551
39Ga0187886_12704832
40Ga0187787_104741991
41Ga0187788_101838782
42Ga0187788_104447252
43Ga0187784_115705281
44Ga0187773_108256312
45Ga0187774_104315432
46Ga0187774_105224041
47Ga0187770_109245471
48Ga0194113_108274942
49Ga0194125_103619562
50Ga0212089_100447861
51Ga0236338_10785681
52Ga0233421_100303721
53Ga0209286_13472641
54Ga0209703_12000762
55Ga0209285_101091772
56Ga0209592_12693381
57Ga0214474_10394572
58Ga0256868_100084604
59Ga0256868_101374821
60Ga0209450_101388172
61Ga0209450_104985112
62Ga0209450_105137931
63Ga0209253_100100321
64Ga0209253_108925711
65Ga0209078_11474711
66Ga0315293_109369672
67Ga0315314_13146791
68Ga0214473_1000690915
69Ga0214473_105375181
70Ga0214473_105880502
71Ga0315274_100605062
72Ga0315274_102437031
73Ga0315284_107653302
74Ga0315282_100591164
75Ga0315282_103829552
76Ga0315277_107078792
77Ga0315295_102511912
78Ga0315281_107441552
79Ga0315281_108955472
80Ga0315281_112274342
81Ga0315275_116830952
82Ga0335070_100665651
83Ga0335081_101033953
84Ga0335084_102676162
85Ga0316603_103045372
86Ga0316603_108518121
87Ga0316603_121409302
88Ga0316601_1009948551
89Ga0326726_102013522
90Ga0326726_103010292
91Ga0316620_101924423
92Ga0316620_104542861
93Ga0316620_106397872
94Ga0316620_106648752
95Ga0316620_114063912
96Ga0316600_104662801
97Ga0316624_103573992
98Ga0316624_110702702
99Ga0316630_103301492
100Ga0299912_100631772
101Ga0299912_104096551
102Ga0314863_029360_1_108
103Ga0314861_0089496_3_116
104Ga0373901_103033_2_115
105Ga0326723_0586787_25_132
106Ga0364942_0264929_54_164
107Ga0373916_0005168_1276_1386
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 34.38%    β-sheet: 0.00%    Coil/Unstructured: 65.62%
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5101520253035LVPQVEQLVAEQPPQEELAVLLNFPPLEKAKADIIRSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.22
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
62.6%37.4%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Sediment
Wetland
Freshwater Lake Sediment
Freshwater
Freshwater Lake
Freshwater
Sediment
Lake Sediment
Peatland
Freshwater Wetlands
Freshwater Wetlands
Groundwater
Hot Spring
Mangrove Sediment
Soil
Soil
Soil
Peatland
Tropical Peatland
Peat Soil
Sediment
Sediment Slurry
13.1%6.5%12.1%15.0%5.6%15.0%12.1%2.8%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Ga0031656_1016474013300003858Freshwater Lake SedimentVEQLVEEQPPQEELAVLLNFPPLEKAKADIIRLTLLLLHSGQMIF*
Ga0031653_1000259523300003859Freshwater Lake SedimentLELQVEQLVAEQPPQEELAVLLNFPPLEKAKADIIRWTFLLLH*
Ga0105095_1006626633300009053Freshwater SedimentVDEQVPQDELAVFLNFPPTEKAKEDIMRLTFLLLH*
Ga0105095_1040530823300009053Freshwater SedimentYLEPQVEQLVAAQPPQEELAVLLNFPPTEKAKADIIR*
Ga0105095_1058069213300009053Freshwater SedimentLEPQVEQLVAAHPPQDEDAVLLNFPPLEKAKADIIRLTFLPLHL
Ga0105095_1069219123300009053Freshwater SedimentVLQVEQLVAEQPPQEELAVLLNFPPLEKAKADITR*
Ga0105106_1076490513300009078Freshwater SedimentIRQYYLPQVEQVVAAQPPQEELAALLNFPPLEKAKADIIR*
Ga0105106_1098323223300009078Freshwater SedimentVLQVEQLVAAQPPQEELAVLLNFPPLEKAKADIIRWTFLL*
Ga0115026_1079762323300009111WetlandLLQPEQLLDEQEQHEELAVLLNFPPTQKAKADMTRVTFLLLHSG
Ga0105094_1028025423300009153Freshwater SedimentVDEQVPQDELAVLLNFPPTEKAKEDIMRLTFLLLH*
Ga0105094_1051445023300009153Freshwater SedimentLEPQVEQLVAAHPPQDEDAVLLNFPPLEKAKADIIRLTFLPL
Ga0113563_1382610323300009167Freshwater WetlandsSYLLHDEQLLAEQPPQDELAVLLNFPPLEKAKADIIRSTFLLLH*
Ga0105101_1001787313300009171Freshwater SedimentLLQPEQLLEEQEPHEELAVLLNFPPTEKAKADMTRVT
Ga0123519_10017680153300009503Hot SpringLAPFPFYFELQEEQEVAEQLLQEELAVLLNFPPLEK
Ga0136851_1005027963300010413Mangrove SedimentVPQVEQLVAAQPPQEEVPVLLNFPPLEKAKADIIRWTFLLLH*
Ga0153915_1001365123300012931Freshwater WetlandsLELQVEQLVAAQPPQEELAVLLNFPPLEKAKADIIR*
Ga0153915_1026930633300012931Freshwater WetlandsYYLEQVEQLVAAQPPQEELAVLLNFPPTEKAKADIIR*
Ga0153915_1064229823300012931Freshwater WetlandsLEPQVVQLVAEQPPQEELAVLLNFPPLEKAKADIIR*
Ga0153915_1086912013300012931Freshwater WetlandsVEQLVDEQVPQEELAVLLNFPPTEKANEDIIRLTFLLLH*
Ga0153915_1088485623300012931Freshwater WetlandsRTLRYFPQVEQLVAAQPPQEELAVLLNFPPLEKAKADIIR*
Ga0153915_1116988113300012931Freshwater WetlandsLEPQVEQLLEEQVPQEELAVLLNLPPLEKANADIIR*
Ga0153915_1161542013300012931Freshwater WetlandsLELQVEQLVEAQPLQEEFAVLLNFLPMENAKADIIRVTFLLLH*
Ga0153915_1205411713300012931Freshwater WetlandsLEPQVEQVVAAQPLQEELAVLLNFPPLEKAKADIIL*
Ga0153915_1344693123300012931Freshwater WetlandsLDPQVEQLGAEQVPQEELAVLLNFPPLEKANADIMRL
Ga0153916_1004471423300012964Freshwater WetlandsVPQVEQLAAEQPPQEELAVLLNFPPLEKAKADIIRWTFLLLH*
Ga0153916_1019510333300012964Freshwater WetlandsLDPQVEQLVAEQPPQEELAVLLNFPPLEKAKADIVR*
Ga0153916_1041754313300012964Freshwater WetlandsVEQLVAAQPPQDELAVLLNFPPLENAKADIIRPTFLLLH
Ga0153916_1057812123300012964Freshwater WetlandsLEPQVEQVVAEHVPQEEPAVLLNFPPTDKAKADITR*
Ga0153916_1187411123300012964Freshwater WetlandsLEQVEQLLDEQVPQEELAVLLNLPPLEKAKADIIR*
Ga0153916_1278240423300012964Freshwater WetlandsVPQVEQLLEEQVPQEEPAVLLNFPPTEKAKADIIR*
Ga0153916_1300018313300012964Freshwater WetlandsLEPQVEQLDEEQLPQEELVVLLNFPLTEKAKADMMRRTFLLLHF
Ga0153914_117466013300013078Freshwater WetlandsLNPTTLYLEPQVEQVVAAQPLQEELVVLLNFPPLEKAKADIIL*
Ga0180007_1045718913300014656GroundwaterPPQEELAVLLNFPPLEKAKADIIRLTLLLLHSGQMIF*
Ga0187775_1005206613300017939Tropical PeatlandVEQLVEEQPLQEELAVLLNFPLLEKAKADIIRWTF
Ga0187786_1047143513300017944Tropical PeatlandVPQVEQLVAAQPVQEELAVLLNFPPTEKAKADIIL
Ga0187776_1017247623300017966Tropical PeatlandLEPQVEQLVAAHPLQEELAVLLNFPPLEKAKADIVR
Ga0187776_1074215013300017966Tropical PeatlandLDPQDEQLVAEHPPQDELAVLLNFPPLEKAKADIIRSTFLLLH
Ga0187781_1048265513300017972Tropical PeatlandLEPQVEQEVAEQVPQEELAVLLNFPPTEKAKADITR
Ga0187886_127048323300018018PeatlandLELQVEQLVAEQPPQEELAVLLNFPPLEKAKADIIR
Ga0187787_1047419913300018029Tropical PeatlandLEPQVEQLVAAQPLQEELVVLLNFPPLEKAKADIMR
Ga0187788_1018387823300018032Tropical PeatlandVDTYLEQVEQLVAAQPPQEELAVLLNFPPTEKAKADMIR
Ga0187788_1044472523300018032Tropical PeatlandVEQLVAAQLPQEEPAVLLNFPPTEKAKADITRWTFLLLHFGQAIFS
Ga0187784_1157052813300018062Tropical PeatlandLIYFEPQVEQVVAEQVPQEEPAVLLNFPPTERAKADITR
Ga0187773_1082563123300018064Tropical PeatlandLEPQVEQLVAAQPLHEELAVLLNFPLLEKAKADIIRWTFLLL
Ga0187774_1043154323300018089Tropical PeatlandMRLHYLPQVEQLVAAQPVQEELAVLLNFPPTEKAKADIIRWTFLLLH
Ga0187774_1052240413300018089Tropical PeatlandLEPQVEQLLGEEQLPQEELAVLLNFPPTEKAKADMTRRTFLLLH
Ga0187770_1092454713300018090Tropical PeatlandLEPQVEQEVAEHVPQEELAVLLNFPPTEKAKADITR
Ga0194113_1082749423300020074Freshwater LakeVEQLLEEQPPQEELAVLLNFPPLEKAKADIIRPTFL
Ga0194125_1036195623300020222Freshwater LakeLWQVEQLLEEQPLQEELAVLLNFPPLEKAKADIIRLT
Ga0212089_1004478613300022551Lake SedimentLEQVEQLVAEQVPQEELAVLLNLPPLEKAKADIIR
Ga0236338_107856813300022593FreshwaterLPQPEQFPEEQLPQDELAVLLNFPPLEKAKADIFRLTFLALHLGQPIFSE
(restricted) Ga0233421_1003037213300024341FreshwaterVEQLEEEQPLQEELAVLLNFPPLEKAKADIIRLTFLLLHS
Ga0209286_134726413300027713Freshwater SedimentVEQLVAAHPPQDEDAVLLNFPPLEKAKADIIRLTFLP
Ga0209703_120007623300027723Freshwater SedimentVEQLVAAHPPQDEDAVLLNFPPLEKAKADIIRLTFLPLHLG
Ga0209285_1010917723300027726Freshwater SedimentVKIYLLQVEQLVAAHPPQDEDAVLLNFPPLEKAKADIIRLTFLPL
Ga0209592_126933813300027731Freshwater SedimentRYLEPQVEQLVAAQPPQEELAVLLNFPPTEKAKADIIR
Ga0214474_103945723300027740SoilLNPRTLYLEPQVEQVVAAQPLQEELAVLLNFPPLEKAKADIIL
Ga0256868_1000846043300027811SoilVKFVKSHLPQVEQLLDEQVPQEELAVLLNFPPLEKAKADIIRLTFLLLH
Ga0256868_1013748213300027811SoilILRTDYLEPQVEQLVAEQPPQEELAVLLNFPPLEKAKADIIR
Ga0209450_1013881723300027885Freshwater Lake SedimentLELQVEQLVAEQPPQEELAVLLNFPPLEKAKADIIRWTFLLLH
Ga0209450_1049851123300027885Freshwater Lake SedimentQVEQLVAEQPPQEELAVLLNFPPLEKAKADIIRWTFLLLH
Ga0209450_1051379313300027885Freshwater Lake SedimentEQLVAEQPPQEELAVLLNFPPLEKAKADIIRWTLLLLH
Ga0209253_1001003213300027900Freshwater Lake SedimentEPQVEQLVEEQPPQEELAVLLNFPPLEKAKADIIRLTLLLLHSGQIIF
Ga0209253_1089257113300027900Freshwater Lake SedimentLEQVEQLLDEQVPQEELAALLNLLPLEKAKADIIR
Ga0209078_114747113300027955Freshwater SedimentVKIYLLQVEQLVAAHPPQDEDAVLLNFPPLEKAKADIIRLTFLP
Ga0315293_1093696723300031746SedimentVEQLVEEQPLQEELAVLLNFPPLEKAKEDIIRLTF
(restricted) Ga0315314_131467913300031877SedimentYLEQVEQLVAEQVPQEELAVLLNLPPLEKAKADIIR
Ga0214473_10006909153300031949SoilVPQVEQLVAEQPPQEELAVLLNFSPLEKAKADIIR
Ga0214473_1053751813300031949SoilVPQVEQLVDEQVPQDELAVLLNFPPLEKAKADIIRLTFLLLHLGQAIF
Ga0214473_1058805023300031949SoilLPQVEQLVDEQVPQEEPAVLLNFPPLEKANEDIIRLTFLFLH
Ga0315274_1006050623300031999SedimentLPQVEQLLDEQVPQEELAVLLNFPPLEKAKADIIRLTFLLLH
Ga0315274_1024370313300031999SedimentLLQPEQLLDEQEPHEELAVLLNFPPTEKAKADMTRVTFL
Ga0315284_1076533023300032053SedimentLLQPEQLLDEQEPHEELAVLLNFPPTEKAKADMTRVT
Ga0315282_1005911643300032069SedimentVPQVEQLADEQVPQEELAVLLNFPPLEKAKEDIIRFTFLLLH
Ga0315282_1038295523300032069SedimentVLQVEQLVAEQVPQDELAVLLNFPPLEKAKADIIRLTFLLLH
Ga0315277_1070787923300032118SedimentLEQVEQLLDEQVPQEELAVLLNLPPLEKAKADIIR
Ga0315295_1025119123300032156SedimentVEQLVEEQPPQEELAVLLNFPPLEKAKADIIRLTLLFLHSGQIIF
Ga0315281_1074415523300032163SedimentVEQLVEEQPLQEELAVLLNFPPLEKAKEDIIRLTFLF
Ga0315281_1089554723300032163SedimentLEPQVEQLVDEQVPQEEPAVLLNFPPLEKANEDIIRLTFLLLH
Ga0315281_1122743423300032163SedimentLEPQVEQVVAAQPLQEELAVLLNLPPLEKAKADIIR
Ga0315275_1168309523300032401SedimentVDEQVPQDELAVLLNFPLLEKAKADIIRLTFLLLHLGQAI
Ga0335070_1006656513300032829SoilLEPQVEQLVAAQPLHEELAVLLNLPPLEKAKADIIR
Ga0335081_1010339533300032892SoilLEPQVEQVVAEQVPQEEPAVLLNFPPTEKAKADITR
Ga0335084_1026761623300033004SoilVPQVEQLVAAHPLQEELAVLLNFPPLEKAKADIVR
Ga0316603_1030453723300033413SoilLWRCRVHLLQPEQLLEEQPPQEELAVLVNFPPLEKAKEDIFRLTFFVLHLG
Ga0316603_1085181213300033413SoilVEQLVAPQLPQEEDAVLLNFPPLEKAKADIIRPTFLLLHL
Ga0316603_1214093023300033413SoilLEDEQLPQEELAVLLNFPPTENAKADITRRTFLLLHLGQAIF
Ga0316601_10099485513300033419SoilLEPQLEQLLDEQVPQEELAVLLNFPPLEKAKADIIRLTFLLLHCGQ
Ga0326726_1020135223300033433Peat SoilLEPQVEQLADEQVPQEELAVLLSFPPTEKANADIIRLTFLLLH
Ga0326726_1030102923300033433Peat SoilLEPQVEQVVAEQAPQEELAVLLNFPPTEKAKADITR
Ga0316620_1019244233300033480SoilLELQVEQLVAAQPPQEELAVLLNFPPLEKAKADIIR
Ga0316620_1045428613300033480SoilLPQVEQLVDEQVPQEELAVLLNFPPTEKANEDIIRLTFLLLH
Ga0316620_1063978723300033480SoilLEPQVVQLVAEQPPQEELAVLLNFPPLEKAKADIIR
Ga0316620_1066487523300033480SoilLGFNGYLEPQVEQLVAEQPPQEELAVLLNFPPLEKAKADITR
Ga0316620_1140639123300033480SoilMGGVLYLEPQVEQLGEAQLPQEEPAVLLNFPPTEKANADIIR
Ga0316600_1046628013300033481SoilVEQLLGDEQLPQEELAVLLNFPPTEKAKADMTRRTFLLLHLGQAIFSEL
Ga0316624_1035739923300033486SoilLEPQVEQVVAEQVPQEELAVLLNFPPTEKAKADITR
Ga0316624_1107027023300033486SoilLEPQVEQVVAEHVPQEEPAVLLNFPPTDKAKADITR
Ga0316630_1033014923300033487SoilLLQVEQLVAAQPPQEELAVLLNFPPTEKAKADIMR
Ga0299912_1006317723300033489SoilLLQVEQVVAAQPLQEELAVLLNFPPLEKAKADIIL
Ga0299912_1040965513300033489SoilVDEQVPQDELAVLLNFPPLEKAKADIIRLTFLLLHL
Ga0314863_029360_1_1083300033804PeatlandEPQVEQLVAAQPLQEELAVLLNFPPTEKAKADIIR
Ga0314861_0089496_3_1163300033977PeatlandYFEPQVEQVVAEQVPQEEPAVLLNFPPTEKAKADITR
Ga0373901_103033_2_1153300034083Sediment SlurryYLEPQVEQVVAAQPLQEELAVLLNFPLLEKAKADIIL
Ga0326723_0586787_25_1323300034090Peat SoilLEQVEQLVAAQPPQDELAVLLNFPPTEKAKADMIR
Ga0364942_0264929_54_1643300034165SedimentLVPQVEQLVAEQPPQEELAVLLNFPPLEKAKADIIR
Ga0373916_0005168_1276_13863300034894Sediment SlurryLEPQVEQLVAEQPPQEELAVLLNFPPLEKAKGDIVR


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